RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy284
(139 letters)
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 136 bits (343), Expect = 1e-42
Identities = 59/99 (59%), Positives = 68/99 (68%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 64
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 65 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKH 103
Score = 45.5 bits (108), Expect = 3e-07
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I ++ D +H +C KC C G + I+C++D
Sbjct: 69 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCV-GDRYLLINSDIVCEQDIYEWT 127
Query: 100 GSTG 103
G
Sbjct: 128 KING 131
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 130 bits (329), Expect = 1e-39
Identities = 58/103 (56%), Positives = 77/103 (74%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
+ CAGCG I DRFLL A+D YWH CLKC C +LG++G++ YTK+ +ILC+ DY+
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 64 RLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 106
Score = 48.9 bits (116), Expect = 4e-08
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C+ CG+ I +++A +H C C C RL G + + C+ D
Sbjct: 72 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVP-GDRFHYINGSLFCEHDRPTAL 130
Query: 100 GSTGYCAACSKVIPAFEMVM 119
+ +
Sbjct: 131 ING--HLNSGGSGGSGGSGG 148
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 127 bits (321), Expect = 2e-38
Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 6 GLEHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQE----------CAGCGKHITDRFLLK 55
G + R+ ++ Q G CAGC +HI DRF+LK
Sbjct: 18 GEFGDEDERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILK 77
Query: 56 ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAF 115
ALD +WH CLKC C L E +++ + CK D+ + FG+ CAAC IP
Sbjct: 78 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 132
Query: 116 EMVMRARNNVYHLECFACQQCNHR 139
++V RA++ VYHL CFAC C +
Sbjct: 133 QVVRRAQDFVYHLHCFACVVCKRQ 156
Score = 41.4 bits (97), Expect = 2e-05
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 41 CAGCGKHI--TDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C I T +A D +H C C C +L + + ++CK DY
Sbjct: 122 CAACQLGIPPTQVVR-RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 120 bits (303), Expect = 7e-36
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 65
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 66 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 102
Score = 62.6 bits (152), Expect = 2e-13
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C I + + +A D +H C C C +L + + ++CK DY
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
M A + H +
Sbjct: 128 QGG--SGGSGGSGG--GTPMVAASPERHDGGLQANPVEVQ 163
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 102 bits (255), Expect = 2e-29
Identities = 44/99 (44%), Positives = 55/99 (55%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRL G
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
S G+ + V+ E + E + N +
Sbjct: 66 SGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQ 104
Score = 30.0 bits (67), Expect = 0.12
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
GS C C + I ++A + +H +C +C C
Sbjct: 1 GSLLTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCG 37
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 98.6 bits (246), Expect = 3e-28
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C C K I D + + +WH+ C +C C L T K N ILC + R
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA--NETFVAKDNKILCNKCTTRED 65
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
C C K I A + + + V+H +CF+
Sbjct: 66 SPK--CKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 34.3 bits (79), Expect = 0.003
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C K I A + +N +H CF C +C
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCL 40
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 93.3 bits (231), Expect = 1e-25
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGST 81
G + + + CAGCG I DRFLL A+D YWH CLKC C +LG++G++
Sbjct: 45 LGGGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTS 104
Query: 82 LYTKANLILCKRDYLRLFG 100
YTK+ +ILC+ DY+RLFG
Sbjct: 105 SYTKSGMILCRNDYIRLFG 123
Score = 30.9 bits (69), Expect = 0.061
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CA C I ++ A ++ +H C C C
Sbjct: 64 CAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQ 95
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 92.0 bits (228), Expect = 3e-25
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 6/107 (5%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
+ CAGCG I DRFLL A+D YWH CLKC C +LG++G++ YTK+ +ILC+ DY+
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNV------YHLECFACQQCN 137
RLFG++G + + ++++ + E + N
Sbjct: 64 RLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLEN 110
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 90.5 bits (225), Expect = 1e-24
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I +A + WH C CD L G + +CK Y++
Sbjct: 6 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKNHA 63
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHL--ECFACQQCN 137
C C I + N +H ECF C C+
Sbjct: 64 V--VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCS 100
Score = 41.6 bits (98), Expect = 6e-06
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 41 CAGCGKHITDRFL-LKALDMYWH--EDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
C GC I + + WH +C C CC L G ++ C + +
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI--GQKFMPVEGMVFCSVECKK 123
Query: 98 LF 99
Sbjct: 124 RM 125
Score = 32.8 bits (75), Expect = 0.011
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CA C ++I + +A N +HL+ F C C+
Sbjct: 2 EKPRCAGCDELIFS-NEYTQAENQNWHLKHFCCFDCD 37
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 79.0 bits (195), Expect = 9e-21
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ + P +GP CAGC + I L ALD WH C KC C L
Sbjct: 1 GSSGSSGKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG---EYI 57
Query: 84 TKANLILCKRDYLRLFGSTGYCAA 107
+K + C+ DY FGS ++
Sbjct: 58 SKDGVPYCESDYHAQFGSG--PSS 79
Score = 30.1 bits (68), Expect = 0.061
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CA C + I + A + +H+ CF CQ C+
Sbjct: 18 CAGCKEEI-KHGQSLLALDKQWHVSCFKCQTCS 49
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 67.0 bits (163), Expect = 2e-15
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKH 45
Score = 58.2 bits (140), Expect = 4e-12
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 39 QECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
CA C K I ++ D +H +C KC C VG + I+C++D
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF-SVGDRYLLINSDIVCEQDIYE 67
Query: 98 LFGSTGYCAACS 109
G
Sbjct: 68 WTKINGGSGGSG 79
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 59.3 bits (144), Expect = 5e-13
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C + I DR L +A+ +H C C C L + T + I C D+ R F
Sbjct: 18 CATCSQPILDRIL-RAMGKAYHPGCFTCVVCHRGLDGIPFT-VDATSQIHCIEDFHRKFA 75
Query: 101 STGYCAA 107
S ++
Sbjct: 76 S--GPSS 80
Score = 34.3 bits (79), Expect = 0.002
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CA CS+ I + ++RA YH CF C C+
Sbjct: 5 SSGEGCYVATLEK--CATCSQPI--LDRILRAMGKAYHPGCFTCVVCH 48
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 57.8 bits (140), Expect = 2e-12
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ + NAQ C CG I F+ K D + H +C C C L + G +
Sbjct: 1 GSSGSSGSIGNAQKLPMCDKCGTGIVGVFV-KLRDRHRHPECYVCTDCGTNLKQKGH--F 57
Query: 84 TKANLILCKRDYLRLFGS 101
+ I C++
Sbjct: 58 FVEDQIYCEKHARERVSG 75
Score = 32.8 bits (75), Expect = 0.007
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C I + ++ R+ H EC+ C C
Sbjct: 18 CDKCGTGI--VGVFVKLRDRHRHPECYVCTDCG 48
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 57.1 bits (138), Expect = 4e-12
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS 80
+ + +AQ C CG I + KA D Y H +C C C+ L + G
Sbjct: 8 VRAPVTKVHGGAGSAQRMPLCDKCGSGIVGAVV-KARDKYRHPECFVCADCNLNLKQKGY 66
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAA 107
+ + C+ +
Sbjct: 67 --FFVEGELYCETHARARTSGP--SSG 89
Score = 34.8 bits (80), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C I V++AR+ H ECF C CN
Sbjct: 28 CDKCGSGI--VGAVVKARDKYRHPECFVCADCN 58
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 55.5 bits (134), Expect = 2e-11
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
N G +C CG+ + ++ +H C C C L +T+ + CK
Sbjct: 3 NWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLD--STTVAIHDAEVYCKS 60
Query: 94 DYLRLFGSTGY 104
Y + +G GY
Sbjct: 61 CYGKKYGPKGY 71
Score = 33.1 bits (76), Expect = 0.004
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+G C AC + + E V +H CF C C
Sbjct: 4 WGGGNKCGACGRTVYHAEEVQ-CDGRSFHRCCFLCMVCR 41
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 54.0 bits (130), Expect = 8e-11
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C + I FL AL WH + C C + +G + + C+ Y + F
Sbjct: 28 CAHCNQVIRGPFL-VALGKSWHPEEFNCAHCKNTMAYIGF--VEEKGALYCELCYEKFFA 84
Query: 101 STGYCAA 107
S ++
Sbjct: 85 SG--PSS 89
Score = 38.6 bits (90), Expect = 5e-05
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ + L+ T CA C++VI + A +H E F C C
Sbjct: 4 GSSGDQDTLVQRAEHIPAG-KRTPMCAHCNQVI--RGPFLVALGKSWHPEEFNCAHCK 58
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 53.1 bits (128), Expect = 1e-10
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G C C K IT + + WH++C C C +L G + + C +
Sbjct: 4 GSSGCVQCKKPITTGGV-TYREQPWHKECFVCTACRKQLS--GQRFTARDDFAYCLNCFC 60
Query: 97 RLFGSTGYCAA 107
L+ S ++
Sbjct: 61 DLYAS--GPSS 69
Score = 34.6 bits (80), Expect = 0.001
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 102 TGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
+ C C K I + R +H ECF C C
Sbjct: 5 SSGCVQCKKPI--TTGGVTYREQPWHKECFVCTACRK 39
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 53.3 bits (128), Expect = 1e-10
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ + + A + C C K + L A +H C +C C+ +L T
Sbjct: 1 GSSGSSGMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS--LGTYA 58
Query: 84 TKANLILCKRDYLRLFGSTG 103
+ I CK + +LF S G
Sbjct: 59 SLHGRIYCKPHFNQLFKSKG 78
Score = 36.4 bits (84), Expect = 4e-04
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C C K + E ++ A V+H+ CF C CN
Sbjct: 12 APARETCVECQKTVYPMERLL-ANQQVFHISCFRCSYCN 49
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 52.3 bits (126), Expect = 2e-10
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C C + I R + A+ WH + C C+ G Y + L C+ Y +LFG
Sbjct: 8 CGACRRPIEGRVV-NAMGKQWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLFG 64
Query: 101 S 101
Sbjct: 65 D 65
Score = 33.4 bits (77), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C AC + I V+ A +H+E F C +C
Sbjct: 8 CGACRRPI--EGRVVNAMGKQWHVEHFVCAKCE 38
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 52.3 bits (126), Expect = 2e-10
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + + + +L A+D WH +C CG C + + C+ Y G
Sbjct: 18 CGGCNRPVLENYL-SAMDTVWHPECFVCGDCFTSFS--TGSFFELDGRPFCELHYHHRRG 74
Query: 101 STGYCAA 107
S ++
Sbjct: 75 SG--PSS 79
Score = 42.3 bits (100), Expect = 2e-06
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+D+L +F C C++ + E + A + V+H ECF C C
Sbjct: 6 SGKDFLAMFSPK--CGGCNRPV--LENYLSAMDTVWHPECFVCGDCF 48
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 52.1 bits (125), Expect = 3e-10
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C + I D L D ++HE C +C C L + + +LC Y F
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL--ADEPFTCQDSELLCNDCYCSAF 75
Query: 100 GSTGYCAA 107
S ++
Sbjct: 76 SS--GPSS 81
Score = 40.9 bits (96), Expect = 6e-06
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
Y F +T CA C ++I + + +H CF C +C
Sbjct: 6 SGPCYDNTFANT--CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQ 50
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 54.3 bits (130), Expect = 4e-10
Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 49/150 (32%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
N G ++C C K + ++ +H+ C C C L +T+ + I CK
Sbjct: 3 NWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNL--DSTTVAVHGDEIYCKS 60
Query: 94 DYLRLFGSTGY----------------------------------------------CAA 107
Y + +G G C
Sbjct: 61 CYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPR 120
Query: 108 CSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C + + A E V+ +H CF C +C
Sbjct: 121 CGQAVYAAEKVI-GAGKSWHKSCFRCAKCG 149
Score = 50.8 bits (121), Expect = 6e-09
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG+ + + WH+ C +C C L +TL K I CK Y + FG
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE--STTLADKDGEIYCKGCYAKNFG 175
Query: 101 STGYCAACSKVIPAFEM 117
+ A
Sbjct: 176 PK--GFGFGQGAGALIH 190
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 51.7 bits (124), Expect = 4e-10
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ +DY FG C CS ++ M A YH ECFAC C
Sbjct: 2 SSGSSGKDYWGKFGEF--CHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVI 50
Score = 45.2 bits (107), Expect = 1e-07
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC +T F+ A + +H +C C C + + + + + C + + +
Sbjct: 18 CHGCSLLMTGPFM-VAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76
Query: 101 S 101
Sbjct: 77 G 77
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 51.3 bits (123), Expect = 5e-10
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
G C CG+ I R + KA++ WH +C +C C L ++G A LC+ +
Sbjct: 3 SGSSGCHQCGEFIIGRVI-KAMNNSWHPECFRCDLCQEVLADIG--FVKNAGRHLCRPCH 59
Query: 96 LRLFGSTGYC 105
R S
Sbjct: 60 NREKASGPSS 69
Score = 35.9 bits (83), Expect = 4e-04
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C + I V++A NN +H ECF C C
Sbjct: 8 CHQCGEFI--IGRVIKAMNNSWHPECFRCDLCQ 38
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 51.3 bits (123), Expect = 6e-10
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 35 AQGPQECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
+ G C GCG+ + + ALD +H C C C +L G Y C+
Sbjct: 2 SSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR--GQHFYAVERRAYCEG 59
Query: 94 DYLRLFGSTGYCA 106
Y+ S
Sbjct: 60 CYVATLESGPSSG 72
Score = 45.1 bits (107), Expect = 1e-07
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C C + + + A + V+H+ CF C C +
Sbjct: 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQ 42
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 50.8 bits (122), Expect = 8e-10
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C+ CG+ + L+ WHE C C C+ LG + C Y F
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG--SRSFVPDKGAHYCVPCYENKF 65
Query: 100 GSTGYCAA 107
S ++
Sbjct: 66 ASG--PSS 71
Score = 40.0 bits (94), Expect = 1e-05
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C+AC + + + +H CF C C
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCE 40
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 50.4 bits (121), Expect = 1e-09
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C K +T + D WH +CL C C L G ++ C + LF
Sbjct: 18 CARCSKTLTQGGV-TYRDQPWHRECLVCTGCQTPLA--GQQFTSRDEDPYCVACFGELFA 74
Query: 101 STGYCAA 107
S ++
Sbjct: 75 S--GPSS 79
Score = 41.2 bits (97), Expect = 4e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
Y F CA CSK + + + R+ +H EC C C
Sbjct: 6 SGPCYENKFAPR--CARCSKTL--TQGGVTYRDQPWHRECLVCTGCQ 48
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 49.7 bits (119), Expect = 2e-09
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C C K I ++ WHE C C C +G + K N C Y +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG--TKSFIPKDNQNFCVPCYEKQH 65
Query: 100 GSTGYCAA 107
S ++
Sbjct: 66 ASG--PSS 71
Score = 40.1 bits (94), Expect = 9e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C K I M + + +H CF C +C
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQ 40
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 49.3 bits (118), Expect = 3e-09
Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G C C K IT + D WH DC C C +L G + C Y
Sbjct: 4 GSSGCVKCNKAITSGGI-TYQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCVDCYK 60
Query: 97 RLFGS 101
Sbjct: 61 NFVSG 65
Score = 33.9 bits (78), Expect = 0.002
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
C C+K I + ++ +H +CF C C+
Sbjct: 8 CVKCNKAI--TSGGITYQDQPWHADCFVCVTCSK 39
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 48.3 bits (115), Expect = 7e-09
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 41 CAGCGKHITDRF---LLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
CAGC I+ + + WH DC C C L VG T+ + ILC
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL--VGRGFLTERDDILCPDCGKD 65
Query: 98 LFG 100
+ G
Sbjct: 66 ISG 68
Score = 34.0 bits (78), Expect = 0.002
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 104 YCAACSKVIPAF--EMVMRARNNVYHLECFACQQCNH 138
CA C+ I + +H +CF C++C+
Sbjct: 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSL 43
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 48.5 bits (116), Expect = 8e-09
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GC K I ++ WH+DC C C +G + + K C + F
Sbjct: 18 CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG--TGSFFPKGEDFYCVTCHETKF 75
Query: 100 GSTGYCAA 107
S ++
Sbjct: 76 ASG--PSS 81
Score = 46.2 bits (110), Expect = 6e-08
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ R C C K I A + + + V+H +CF C C
Sbjct: 6 SGKCTTREDSPK--CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCK 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 47.1 bits (112), Expect = 3e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY RL+G+ C +C + I V+ A YH +CF C C
Sbjct: 9 DYQRLYGTR--CFSCDQFIE--GEVVSALGKTYHPDCFVCAVCR 48
Score = 44.0 bits (104), Expect = 4e-07
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C C + I + AL +H DC C C G + +C++ L +
Sbjct: 18 CFSCDQFIEGEVV-SALGKTYHPDCFVCAVCRLPFPP-GDRVTFNGKECMCQKCSLPVSV 75
Query: 101 ST 102
S
Sbjct: 76 SG 77
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 45.8 bits (109), Expect = 7e-08
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD-YLRLF 99
C C K + + +L WH CLKC C L C Y +F
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLT--SGGHAEHEGKPYCNHPCYSAMF 60
Query: 100 GSTGY 104
G G+
Sbjct: 61 GPKGF 65
Score = 32.7 bits (75), Expect = 0.006
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C K + E V + +H C C++C
Sbjct: 3 CPKCDKEVYFAERVT-SLGKDWHRPCLKCEKCG 34
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 45.9 bits (109), Expect = 7e-08
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
++ +C C K + + +L WH+ CLKC C L C
Sbjct: 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT--PGGHAEHDGKPFC 60
Query: 92 KRD-YLRLFGSTGY 104
+ Y LFGS
Sbjct: 61 HKPCYATLFGSGPS 74
Score = 35.5 bits (82), Expect = 6e-04
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G C C K + E V + +H C C++C+
Sbjct: 6 SGMASKCPKCDKTVYFAEKVS-SLGKDWHKFCLKCERCS 43
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 45.7 bits (108), Expect = 9e-08
Identities = 15/80 (18%), Positives = 26/80 (32%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ + A CA CG+H+ L ++H C +C C+ L G +
Sbjct: 1 GSSGSSGQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQH 60
Query: 84 TKANLILCKRDYLRLFGSTG 103
C + +
Sbjct: 61 PGDGHFYCLQHLPQTDSGPS 80
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CA C + + E + + +H CF C C
Sbjct: 12 AGAGDLCALCGEHLYVLERLC-VNGHFFHRSCFRCHTCE 49
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 44.5 bits (105), Expect = 2e-07
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 41 CAGCGKHITDRF---LLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
C C K I+ + D WH +C CG C L VG T+ I C++
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL--VGKGFLTQNKEIFCQKCGSG 65
Query: 98 LFGST 102
+
Sbjct: 66 MDTDI 70
Score = 34.1 bits (78), Expect = 0.002
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 104 YCAACSKVIPAFEM--VMRARNNVYHLECFACQQCN 137
C ACSK I + +++ +H ECF C +C+
Sbjct: 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCS 42
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 44.3 bits (105), Expect = 2e-07
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C C ++ + +HE C C C + Y C+ D+ LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLF 71
Query: 100 G 100
Sbjct: 72 A 72
Score = 43.9 bits (104), Expect = 3e-07
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
++ C C E ++ + +YH +CF C QC
Sbjct: 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCF 46
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 43.5 bits (103), Expect = 6e-07
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 41 CAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C C ++ + +HE C C C + Y C+ D+ LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLF 71
Query: 100 G 100
Sbjct: 72 A 72
Score = 43.5 bits (103), Expect = 6e-07
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ + L +T C C E ++ + +YH +CF C QC
Sbjct: 1 ISEFMANALASAT--CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCF 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 41.3 bits (97), Expect = 4e-06
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 89 ILCKRDYLRLFGSTGYCAACSKVIPAF---EMVMRARNNVYHLECFACQQCN 137
Y CA C I F V+ +H CF C++C+
Sbjct: 4 GSSGDCYKNFVAKK--CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCS 53
Score = 40.9 bits (96), Expect = 6e-06
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 41 CAGCGKHIT----DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
CAGC IT ++ WH+ C C C L + C
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA--NKRFVFHQEQVYCPDCAK 75
Query: 97 RL 98
+L
Sbjct: 76 KL 77
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 40.2 bits (94), Expect = 1e-05
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C C I ++ L + +H D C C L + C + ++
Sbjct: 18 CQKCHAIIDEQPL-IFKNDPYHPDHFNCANCGKELTADA---RELKGELYCLPCHDKMGV 73
Query: 101 ST 102
S
Sbjct: 74 SG 75
Score = 32.1 bits (73), Expect = 0.013
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C +I E + +N+ YH + F C C
Sbjct: 13 LGKYICQKCHAIID--EQPLIFKNDPYHPDHFNCANCG 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 4e-04
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 42/140 (30%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNA-QGPQECAGCGKHI------TDRFLLKALD--MYWH 62
++R+ +K +Q + + N G G GK + +D ++W
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGV---LGSGKTWVALDVCLSYKVQCKMDFKIFW- 186
Query: 63 EDCLKCGCCDC--RLGEVGSTLYTKANLILCKR---------------DYLR-LFGSTGY 104
L C+ + E+ L + + R LR L S Y
Sbjct: 187 ---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 105 CAAC--------SKVIPAFE 116
+K AF
Sbjct: 244 ENCLLVLLNVQNAKAWNAFN 263
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 35.1 bits (80), Expect = 0.001
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
+ G C C K+IT R L +A + ++H C C C E G +Y + + I
Sbjct: 2 SSGSSGCDSCEKYITGRVL-EAGEKHYHPSCALCVRCGQMFAE-GEEMYLQGSSIWHPA 58
Score = 32.4 bits (73), Expect = 0.009
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C +C K I V+ A YH C C +C
Sbjct: 8 CDSCEKYIT--GRVLEAGEKHYHPSCALCVRCG 38
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 34.8 bits (80), Expect = 0.001
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 41 CAGCGKHI-TDRFLLKALDMYWH--EDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
C GC I + + + WH +C C CC L +G ++ C +
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVE 59
Score = 27.9 bits (62), Expect = 0.35
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 104 YCAACSKVIPAFEMVMRARNNVYHL--ECFACQQCNH 138
C C I + N +H ECF C C+
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 40
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural
protein 3; viral protease, serine protease, NS3
protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB:
3l6p_A
Length = 236
Score = 26.9 bits (59), Expect = 2.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 45 GKHITDRFLLKALDMYWHEDCLKCG 69
G H+ D L KA ++ W E+ G
Sbjct: 1 GAHMADLSLEKAAEVSWEEEAEHSG 25
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 24.6 bits (53), Expect = 2.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDC 65
CA CGK + + LD +WH+ C
Sbjct: 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair,
loop-rich domain, relaxation, DNA binding protein; NMR
{Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Length = 111
Score = 25.0 bits (54), Expect = 7.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
C CGK D +L+ D+ C DCR + L TK K++YL
Sbjct: 7 ICEECGKEFMDSYLMDHFDL--------PTCDDCRDADDKHKLITKTE---AKQEYL 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.454
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,042,284
Number of extensions: 107343
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 120
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)