RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy284
(139 letters)
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 33
Score = 61.8 bits (150), Expect = 8e-15
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
L C C CRLGEVG LY K LC+RDYLRL
Sbjct: 1 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 33
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 34
Score = 60.9 bits (148), Expect = 1e-14
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 67 KCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
KC C +LG++G++ YTK+ +ILC+ DY+RLFG
Sbjct: 1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 34
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 31
Score = 55.9 bits (135), Expect = 1e-12
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECF 131
++G C+AC + IPA E+VMRA+ NVYHL+CF
Sbjct: 1 NSGACSACGQSIPASELVMRAQGNVYHLKCF 31
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 53.2 bits (128), Expect = 1e-11
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCL 66
+ CAGCG I DRFLL A+D YWH CL
Sbjct: 3 KRCAGCGGKIADRFLLYAMDSYWHSRCL 30
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 51.7 bits (124), Expect = 6e-11
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDC 65
C GC ++I DR+ LKA+D YWHEDC
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDC 30
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.8 bits (80), Expect = 2e-04
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCL 66
P +GP CAGC + I L ALD WH C
Sbjct: 2 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCF 36
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 32.7 bits (75), Expect = 0.001
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
+D+L +F C C++ + E + A + V+H ECF
Sbjct: 1 KDFLAMFSPK--CGGCNRPVL--ENYLSAMDTVWHPECF 35
Score = 29.2 bits (66), Expect = 0.021
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDC 65
C GC + + + + L A+D WH +C
Sbjct: 11 CGGCNRPVLENY-LSAMDTVWHPEC 34
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 32.4 bits (74), Expect = 0.002
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 23 QGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDC 65
Q A+ +P + P CA C + I FL+ AL WH +
Sbjct: 7 QRAEH---IPAGKRTPM-CAHCNQVIRGPFLV-ALGKSWHPEE 44
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.7 bits (59), Expect = 0.20
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 105 CAACSKVIPAFEMVMRARNNVYHLECF 131
CA CS+ I + ++RA YH CF
Sbjct: 11 CATCSQPI--LDRILRAMGKAYHPGCF 35
Score = 24.0 bits (52), Expect = 1.9
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDC 65
CA C + I DR +L+A+ +H C
Sbjct: 11 CATCSQPILDR-ILRAMGKAYHPGC 34
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 26.3 bits (58), Expect = 0.26
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
R C C K I A + + + V+H +CF
Sbjct: 3 TTREDSPK--CKGCFKAIVAGDQNVEYKGTVWHKDCF 37
Score = 24.0 bits (52), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 41 CAGCGKHIT--DRFLLKALDMYWHEDC 65
C GC K I D+ + + WH+DC
Sbjct: 11 CKGCFKAIVAGDQNV-EYKGTVWHKDC 36
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 25.6 bits (56), Expect = 0.50
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
G + C C + + A E V+ +H CF
Sbjct: 12 VGGSDGCPRCGQAVYAAEKVI-GAGKSWHKSCF 43
Score = 24.4 bits (53), Expect = 1.3
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 31 VPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDC 65
+ G C CG+ + + WH+ C
Sbjct: 8 MAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSC 42
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 25.1 bits (55), Expect = 0.94
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 70 CCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGY 104
C C +TL K I CK Y + FG G+
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGF 36
>d1xg0c_ a.1.1.3 (C:) Phycoerythrin beta subunit {Cryptophyte
(Rhodomonas sp. CS24) [TaxId: 79257]}
Length = 175
Score = 26.0 bits (57), Expect = 1.6
Identities = 7/48 (14%), Positives = 11/48 (22%)
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVY 126
YT + C RD + Y + + Y
Sbjct: 68 SGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETY 115
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.6 bits (51), Expect = 1.9
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCL 66
C C K + + +L WH+ CL
Sbjct: 5 CPKCDKTVYFAEKVSSLGKDWHKFCL 30
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.6 bits (51), Expect = 2.1
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWH 62
C C + I R ++ A+ WH
Sbjct: 8 CGACRRPIEGR-VVNAMGKQWH 28
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.3 bits (50), Expect = 2.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCL 66
C CG+ I R ++KA++ WH +C
Sbjct: 1 CHQCGEFIIGR-VIKAMNNSWHPECF 25
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 22.8 bits (49), Expect = 4.9
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDC 65
C C + I + AL +H DC
Sbjct: 18 CFSCDQFIEGEV-VSALGKTYHPDC 41
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 22.4 bits (48), Expect = 5.3
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDC 65
A + C C K + L A +H C
Sbjct: 4 APARETCVECQKTVYPMERLLANQQVFHISC 34
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 23.3 bits (50), Expect = 5.9
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 70 CCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGY 104
C C+ +T+ + I CK Y + +G G
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGK 36
>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain
{Phormidium laminosum [TaxId: 32059]}
Length = 187
Score = 24.3 bits (53), Expect = 6.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 25 AQQTKAVPNNAQGPQECAGC 44
AQQ A P A G CA C
Sbjct: 5 AQQNYANPREATGRIVCANC 24
>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 187
Score = 24.3 bits (53), Expect = 6.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 25 AQQTKAVPNNAQGPQECAGC 44
AQQ A P A G CA C
Sbjct: 5 AQQNYANPREANGRIVCANC 24
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 22.3 bits (47), Expect = 6.7
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDC 65
+ G C C K+IT R +L+A + ++H C
Sbjct: 2 SSGSSGCDSCEKYITGR-VLEAGEKHYHPSC 31
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 24.2 bits (51), Expect = 6.8
Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 2/81 (2%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFL--LKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKAN 87
P ++C C T ++ K + D + G + N
Sbjct: 68 VSPKEVAERKDCVECHSDETPVWVRAWKRSTHANLDKIRNLKSDDPLYYKKGKLEEVENN 127
Query: 88 LILCKRDYLRLFGSTGYCAAC 108
L + + C C
Sbjct: 128 LRSMGKLGEKETLKEVGCIDC 148
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga
(Griffithsia monilis) [TaxId: 42003]}
Length = 164
Score = 23.7 bits (51), Expect = 9.7
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 79 GSTLYTKANLILCKRD---YLRLFGSTGYCAACSKVIPAFEMVMRARNNVY 126
G + + C RD Y+RL Y P E + VY
Sbjct: 70 GEAGDSPEKINKCYRDIDHYMRL---INYSLVVGGTGPVDEWGIAGSREVY 117
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus
elongatus [TaxId: 32046]}
Length = 162
Score = 23.7 bits (51), Expect = 9.8
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 83 YTKANLILCKRD---YLRLFGSTGYCAACSKVIPAFEMVMRARNNVY 126
T C RD YLR+ YC P E ++ + +
Sbjct: 76 STPEGKAKCARDIGYYLRM---VTYCLVAGGTGPMDEYLIAGLSEIN 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.137 0.454
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,716
Number of extensions: 22683
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 61
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)