BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2841
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2
SV=1
Length = 219
Score = 264 bits (674), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 124/177 (70%), Positives = 151/177 (85%), Gaps = 2/177 (1%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MIPN HFHKDWQ+++K WFNQPAR+ RR+Q RIKKAK +APRPAAGPLRP+VRCPT+RYH
Sbjct: 7 MIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYH 66
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGFTL EIR AGLN FAR++GIAVD RRR+KS+ESLQ+N+QRLKEY+++LI+F
Sbjct: 67 TKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILF 126
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
P+ KK+ KGEA EERK+ATQL+GPLMP++Q PKS AR +E EK F A+Q LR
Sbjct: 127 PK--GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLR 181
>sp|P41126|RL13_DROME 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=2
SV=1
Length = 218
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 145/178 (81%), Gaps = 2/178 (1%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MIPN H+HK WQ+++K WFNQPARK RR R+KKAK + PRPA+G LRP+VRCPT+RYH
Sbjct: 7 MIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYH 66
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
++RAGRGFTLEE++GAG+ A FA+++GIAVD RR++KS+ES Q NIQRLKEY+SKLI+F
Sbjct: 67 TKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILF 126
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPK-SKARIPSEAEKKFSAFQTLR 177
P E KK+R GE++ EE K+ATQLKGP++PI+ +P + R ++ EKKF AF TLR
Sbjct: 127 PINE-KKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLR 183
>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3
Length = 211
Score = 230 bits (586), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/178 (64%), Positives = 147/178 (82%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI N HFHKDWQK ++ WFNQPARK RRR+AR KA+ IAPRP +GPLRP+VRCPT+RYH
Sbjct: 8 MILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGFTLEE++ AG+N + AR++GI+VD+RRR++S ESLQ N+QRLKEY++KLI+F
Sbjct: 68 TKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ K +KG++T EE K+ATQL GP+MPI++ K KAR+ SE EK F AF +LRM
Sbjct: 128 PRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRM 184
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2
Length = 211
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/178 (66%), Positives = 145/178 (81%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRP AGP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
K+VRAGRGF+LEE++ AG+N RFAR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 KKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++PEE K+ATQL GP+MPIR + KAR+ SE EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRM 184
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3
Length = 211
Score = 224 bits (570), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/178 (65%), Positives = 144/178 (80%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI N HFHKDWQK ++ WFNQPARK RRR+AR KA+ IAPRP AGPLRPIVRCPTVRY+
Sbjct: 8 MILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYN 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGFTLEE++ AG+N R AR++GIAVD RRR++S ESL +N+QRLK Y+SKLI+F
Sbjct: 68 TKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG++T EE K+ATQL GP+MPI+ K KAR+ +E EKKF+AF LRM
Sbjct: 128 PRKVSAP-KKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRM 184
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3
Length = 211
Score = 220 bits (560), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 143/178 (80%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4
Length = 211
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 143/178 (80%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
M+ HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MP+R K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRM 184
>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2
Length = 211
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 142/178 (79%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRM 184
>sp|Q56JZ1|RL13_BOVIN 60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3
Length = 211
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 142/178 (79%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3
Length = 211
Score = 216 bits (550), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 142/178 (79%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+M IR K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRM 184
>sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1
SV=1
Length = 206
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 130/178 (73%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IPN HF K WQ Y+K WFNQPARK RRR AR KKA +I PRP +GPLRP+V T++Y+
Sbjct: 6 VIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VR G+GFTLEE++ AG+ + A ++GIAVD RR+++S+E LQ N+QRLK YK+KL++F
Sbjct: 66 MKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PRR +K++ G++TPEE ATQ++G +PI + KP + + K F AF +R+
Sbjct: 126 PRRA-RKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRL 182
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1
Length = 184
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
++ + HF K WQ +K WFNQPARK RRRQAR KA+ IAPRPA+GPLRPIV CPT RY+
Sbjct: 7 VLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYN 66
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VR+GRGF+L+E+R AGLN +FAR++GIAVD RRR+ S+E LQ N+ RLK YK+KLI+F
Sbjct: 67 MKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILF 126
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
P K + +A +E K ATQL+ P++PI Q + KA P+ +E ++SAF +R
Sbjct: 127 PLNPAKP-QAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182
>sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 128/178 (71%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IPN HF K WQ Y+K WFNQPARK RRR AR KKA +I PRP AGPLRP+V T++Y+
Sbjct: 6 VIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VR G+GFTLEE++ AG+ + A ++GIAVD RR+++S+E LQ N+QRLK YK+KL++F
Sbjct: 66 MKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PRR +K++ G++T EE ATQ++G MPI + K ++ + K AF +R+
Sbjct: 126 PRRA-RKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRL 182
>sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2
SV=1
Length = 206
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 130/178 (73%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IP++HF K WQ Y+K WFNQPARK RRR AR KKA +I PRP +GPLRP+V T++Y+
Sbjct: 6 VIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAG+GFTLEE++ AG+ + A ++GI+VD RR+++S+E LQ N+QRLK YK+KL+VF
Sbjct: 66 MKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PRR ++++ G++TPEE ATQ++G MPI K + + K F A+ +R+
Sbjct: 126 PRRS-RQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRL 182
>sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 131/179 (73%), Gaps = 3/179 (1%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IPN HF K WQ Y+K WFNQPARK RRR AR KKA +I PRP AGPLRP+V T++Y+
Sbjct: 6 VIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VR G+GFTLEE++ AG+ + A ++GI++D RR+++S+E LQ N+QRLK YK+KL++F
Sbjct: 66 MKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPI-RQSKPKSKARIPSEAEKKFSAFQTLRM 178
PRR +K++ G++T EE ATQ++G MPI R+ + ++ SE K +A+ +R+
Sbjct: 126 PRRA-RKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEM-KSVNAYDKIRL 182
>sp|P91128|RL13_CAEEL 60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=3
SV=1
Length = 207
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
M+ NAHF K W K IK WF+QPARK RRRQ R KA EIAPRP AG LR +VRCP RY+
Sbjct: 8 MLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYN 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+ R GRGF+L+E++ AG++ AR++GIAVD RR +K+ E L+ N RLKEYK+KLI+F
Sbjct: 68 TKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
P++ +KG+++ EE KVA QL+G ++P+ + + R ++AE+K F+ LR
Sbjct: 128 PKKASAP-KKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl13 PE=1 SV=1
Length = 208
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 123/175 (70%), Gaps = 4/175 (2%)
Query: 2 IPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHK 61
+PNAHFHKDWQ+Y+K WFNQP RK RRRQAR KA +IAPRP +RP V+ PT+RY+
Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNM 67
Query: 62 RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121
+VRAGRGFTLEE++ AG++ R A ++GI VD RRR++S ESLQ N++R+K Y + LIVFP
Sbjct: 68 KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127
Query: 122 RREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTL 176
R+ + +KG+AT T + ++PI Q + I EA K F+AF TL
Sbjct: 128 RKAGQP-KKGDATDVSGAEQTDV-AAVLPITQEAVEEAKPITEEA-KNFNAFSTL 179
>sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80)
GN=RPL13 PE=2 SV=1
Length = 208
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
M+PN HFHK WQ ++K WFNQPARK RRR AR +KAK PRP AG L+PIVRC TV+Y+
Sbjct: 7 MLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYN 66
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+ R GRGFTLEE++ AG+ A+FA +VGIAVD RR+++S+E+LQ N+QRLK Y++ L++F
Sbjct: 67 TKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIF 126
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKP 156
PR KK + EA+ + A+Q KG L+P++ +KP
Sbjct: 127 PRNMKKP-KAFEASAADCSAASQAKGELLPLKGTKP 161
>sp|P49627|RL13_TOBAC 60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1
Length = 202
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Query: 4 NAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRV 63
N HF K WQ Y+K WFNQPARK RRR AR KKA +I+PRP AG LRPIV T++Y+ +V
Sbjct: 5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKV 64
Query: 64 RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRR 123
R+GRGF+LEE++ AG+ + A ++GIAVD RRR++S+E LQ N+QRL++ + +L+VFPRR
Sbjct: 65 RSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRR 124
Query: 124 EKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
+ R P ATQ+ G MPI + K + + K F+A+ LR+
Sbjct: 125 ASRS-RLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRV 178
>sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana
GN=RPL13C PE=3 SV=1
Length = 206
Score = 166 bits (420), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 120/178 (67%), Gaps = 1/178 (0%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IPN HF K W+ Y+K FNQPA K RRR AR KA +I PRP AGP+RP+V T+ Y+
Sbjct: 6 VIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAG+GFTLEE++ AG+ + A ++GI+VD R+++S+E Q N+QRLK YK+KL++F
Sbjct: 66 MKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR + ++ G++ +E ATQ++ MPI + P + + K F+A+ +R+
Sbjct: 126 PRCA-RTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRL 182
>sp|Q54E20|RL13_DICDI 60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=1
SV=1
Length = 209
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 127/183 (69%), Gaps = 12/183 (6%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
++ N HF K WQ ++ WFNQPARK RRR RI+KA ++ PRP A L+P+VR T+RY+
Sbjct: 7 VLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIAT-LKPVVRGSTIRYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGFTLEE++ AGL A++AR++GIAVD RR +K+ +SL LN QRLK Y+SKL++F
Sbjct: 66 MKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLF 125
Query: 121 PRREKKKLRKGEATPEERKVATQ------LKGPLMPIRQSKPKSKARIPSEAEKKFSAFQ 174
PR+ +KGEAT EE A Q +K + + P R P+EAEKKFSA+
Sbjct: 126 PRKVNAP-KKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTP----RKPTEAEKKFSAYA 180
Query: 175 TLR 177
TL+
Sbjct: 181 TLK 183
>sp|O46157|RL13_LUMRU 60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1
Length = 188
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/159 (59%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Query: 19 FNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAG 78
FNQPARK RRR AR KKA IAPRPAAG LRP VRC T +Y+ R+R GRGF+L+E++ AG
Sbjct: 2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAG 61
Query: 79 LNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEER 138
+N + AR++GI+VD RRR+KS+ESLQLN+QRLKEY+SKLI+FP++ K KG+AT EE
Sbjct: 62 INKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKP-NKGDATEEEM 120
Query: 139 KVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
K+ATQLKG L+P KAR ++ E+K F LR
Sbjct: 121 KLATQLKGKLLPRTAWIKPEKARAITDEERKVKVFDRLR 159
>sp|Q876B2|RL13_SACEX 60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3
SV=1
Length = 199
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 113/173 (65%), Gaps = 13/173 (7%)
Query: 6 HFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRA 65
HF K WQ+ +K FNQ +K RR AR+ KA +IAPRP LRP+VR PTV+Y+++VRA
Sbjct: 13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRA 71
Query: 66 GRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREK 125
GRGFT E++ AGL +AR++GIAVD RR++K+ E +LN+QRLKEY+SK+IVFPR K
Sbjct: 72 GRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK 131
Query: 126 KKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PE +V + PI Q +++ R + + SA++TLRM
Sbjct: 132 --------VPETEQVLST--AAAFPIAQPAVETETRAVQDNGE--SAYRTLRM 172
>sp|O59931|RL13_CANAL 60S ribosomal protein L13 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RPL13 PE=3 SV=1
Length = 202
Score = 142 bits (359), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 116/175 (66%), Gaps = 11/175 (6%)
Query: 4 NAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRV 63
N HF K WQ+ ++ F+Q +K RRQ+R++KA +IAPRP LRP+VR PTV+Y+++V
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 64 RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRR 123
RAGRGFTL E++ G+ ++AR++GI+VD RR++KS E+ N+ RL+EYKSKL++F
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIF--- 126
Query: 124 EKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
+KK A+ E+ V+ P+ Q P+S R E+ +A++TLR+
Sbjct: 127 DKKTKASEVASFEQVDVSATF-----PVEQPAPESGLRAVEVPEQ--TAYRTLRL 174
>sp|Q12690|RL13A_YEAST 60S ribosomal protein L13-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13A PE=1 SV=1
Length = 199
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 13/173 (7%)
Query: 6 HFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRA 65
HF K WQ+ +K F+Q +K RR AR +A +IAPRP LRP+VR PTV+Y+++VRA
Sbjct: 13 HFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRA 71
Query: 66 GRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREK 125
GRGFTL E++ AGL A +AR++GIAVD RR++++ E N+QRLKEY+SK+IVFPR K
Sbjct: 72 GRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK 131
Query: 126 KKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PE +V + PI Q +AR + + SAF+TLR+
Sbjct: 132 --------APEAEQVLS--AAATFPIAQPATDVEARAVQDNGE--SAFRTLRL 172
>sp|P40212|RL13B_YEAST 60S ribosomal protein L13-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13B PE=1 SV=1
Length = 199
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 13/173 (7%)
Query: 6 HFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRA 65
HF K WQ+ +K F+Q +K RR AR +A +IAPRP LRP+VR PTV+Y+++VRA
Sbjct: 13 HFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRA 71
Query: 66 GRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREK 125
GRGFTL E++ AGL A +AR++GIAVD RR++++ E N+QRLKEY+SK+IVFPR K
Sbjct: 72 GRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK 131
Query: 126 KKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PE +V + PI Q +AR + + SAF+TLR+
Sbjct: 132 --------APEAEQVLS--AAATFPIAQPATDVEARAVQDNGE--SAFRTLRL 172
>sp|P0DJ58|RL13_TETTS 60S ribosomal protein L13 OS=Tetrahymena thermophila (strain SB210)
GN=RPL13 PE=1 SV=1
Length = 206
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Query: 2 IPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHK 61
+P A K Q IK +FNQ A+K R AR +A + PRP L+P+VR T RY+K
Sbjct: 7 LPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQTQRYNK 65
Query: 62 RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121
+ GRGFTL+E++ AG++A FA+S+GI VD RR+++ ESL+LN +RL Y SKL++FP
Sbjct: 66 STKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFP 125
Query: 122 RREKK 126
R + K
Sbjct: 126 RHQGK 130
>sp|Q9YEN9|RL13E_AERPE 50S ribosomal protein L13e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl13e
PE=3 SV=2
Length = 80
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Query: 63 VRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSK---SMESLQLNIQRLKE 112
VR GRGF+L E+ AGL+A+ AR +G+ VD RRR+ ++E+L+ I+RL+E
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLRE 75
>sp|Q97W05|RL13E_SULSO 50S ribosomal protein L13e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl13e PE=3 SV=2
Length = 79
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 49 RPIVRCPTVRY---HKRV--RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESL 103
+ +++ P + HKR R GRGF++ E+ AGLN AR +GI VD RR+S E
Sbjct: 5 KAVIKRPNYHFEYPHKRKYKRIGRGFSVGELEKAGLNINKARKLGIFVDIRRKSVHEE-- 62
Query: 104 QLNIQRLKEYKSKL 117
N++ LK++ +L
Sbjct: 63 --NVETLKKFSEQL 74
>sp|C3NMT7|RL13E_SULIN 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl13e PE=3 SV=1
Length = 79
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 49 RPIVRCPTVRY---HKRV--RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESL 103
+ +++ P + HKR R GRGF++ E+ AGLN AR +GI VD RR+S E
Sbjct: 5 KALIKRPNYHFEHPHKRKDKRIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVHEE-- 62
Query: 104 QLNIQRLKEYKSKL 117
N++ LK++ +L
Sbjct: 63 --NVEVLKKFLEQL 74
>sp|C3N968|RL13E_SULIY 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl13e PE=3 SV=1
Length = 79
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 49 RPIVRCPTVRY---HKRV--RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESL 103
+ +++ P + HKR R GRGF++ E+ AGLN AR +GI VD RR+S E
Sbjct: 5 KALIKRPNYHFEYPHKRKDKRIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVHEE-- 62
Query: 104 QLNIQRLKEYKSKL 117
N++ LK++ +L
Sbjct: 63 --NVEVLKKFLEQL 74
>sp|C3MU90|RL13E_SULIM 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl13e PE=3 SV=1
Length = 79
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 49 RPIVRCPTVRY---HKRV--RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESL 103
+ +++ P + HKR R GRGF++ E+ AGLN AR +GI VD RR+S E
Sbjct: 5 KALIKRPNYHFEYPHKRKDKRIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVHEE-- 62
Query: 104 QLNIQRLKEYKSKL 117
N++ LK++ +L
Sbjct: 63 --NVEVLKKFLEQL 74
>sp|C3MKC0|RL13E_SULIL 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl13e PE=3 SV=1
Length = 79
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 64 RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKL 117
R GRGF++ E+ AGLN AR +GI VD RR+S E N++ LK++ +L
Sbjct: 25 RIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVHEE----NVEVLKKFLEQL 74
>sp|C4KKE5|RL13E_SULIK 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rpl13e PE=3 SV=1
Length = 79
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 49 RPIVRCPTVRY---HKRV--RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESL 103
+ +++ P + HKR R GRGF++ E+ AGLN AR +GI VD RR+S E
Sbjct: 5 KALIKRPNYHFEYPHKRKDKRIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVHEE-- 62
Query: 104 QLNIQRLKEYKSKL 117
N++ LK++ +L
Sbjct: 63 --NVEVLKKFLEQL 74
>sp|C3N178|RL13E_SULIA 50S ribosomal protein L13e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl13e PE=3 SV=1
Length = 79
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 49 RPIVRCPTVRY---HKRV--RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESL 103
+ +++ P + HKR R GRGF++ E+ AGLN AR +GI VD RR+S E
Sbjct: 5 KALIKRPNYHFEYPHKRKDKRIGRGFSIGELEKAGLNINNARKLGIIVDIRRKSVHEE-- 62
Query: 104 QLNIQRLKEYKSKL 117
N++ LK++ +L
Sbjct: 63 --NVEVLKKFLEQL 74
>sp|P58469|RL13E_SULTO 50S ribosomal protein L13e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl13e PE=3 SV=1
Length = 77
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 48 LRPIVRCPTVRYH---KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQ 104
+ PIV+ P R+ K + G+GF+L+E++ +G + + A+ + + +D RR++ E+++
Sbjct: 2 VEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVE 61
Query: 105 LNIQRLKE 112
+ +++LKE
Sbjct: 62 V-LKKLKE 68
>sp|C0IN03|HENMT_XENTR Small RNA 2'-O-methyltransferase OS=Xenopus tropicalis GN=henmt1
PE=2 SV=1
Length = 369
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 73 EIRGAGLNARFARSVG----IAVDARRRSKSMESLQLNIQRLKEYKSKL-IVFPR-REKK 126
EI G G R +++VG IAV R ++S ESLQ ++ YK+ L IV+P +E+K
Sbjct: 186 EITGVGEPPRDSKNVGFCSQIAVFTRNYTESEESLQRKMECKSVYKTVLHIVYPSLQEEK 245
Query: 127 KLRKG 131
LR+
Sbjct: 246 YLRRA 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,499,813
Number of Sequences: 539616
Number of extensions: 2400356
Number of successful extensions: 8570
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8456
Number of HSP's gapped (non-prelim): 109
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)