Query psy2841
Match_columns 178
No_of_seqs 121 out of 283
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 18:17:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01294 Ribosomal_L13e: Ribos 100.0 2.5E-89 5.5E-94 564.1 6.0 177 1-178 2-178 (179)
2 PTZ00352 60S ribosomal protein 100.0 1.2E-85 2.6E-90 552.9 13.4 176 1-178 6-190 (212)
3 KOG3295|consensus 100.0 4.3E-85 9.3E-90 544.1 9.5 176 1-178 6-181 (205)
4 PTZ00192 60S ribosomal protein 100.0 3.3E-84 7.2E-89 545.7 12.4 171 1-178 7-192 (218)
5 COG4352 RPL13 Ribosomal protei 100.0 6.3E-45 1.4E-49 281.0 6.9 113 8-121 1-113 (113)
6 PRK12277 50S ribosomal protein 100.0 1.9E-38 4E-43 234.7 6.5 73 41-118 2-79 (83)
7 PF14265 DUF4355: Domain of un 59.6 12 0.00026 28.4 3.3 39 72-118 76-114 (125)
8 COG4352 RPL13 Ribosomal protei 56.6 9.9 0.00022 30.2 2.4 80 32-118 21-106 (113)
9 PF09278 MerR-DNA-bind: MerR, 55.2 6.6 0.00014 26.2 1.1 11 67-77 13-23 (65)
10 PF07963 N_methyl: Prokaryotic 53.2 7.3 0.00016 22.2 0.9 11 67-77 1-11 (20)
11 PF13544 N_methyl_2: Type IV p 47.2 9.4 0.0002 23.3 0.8 17 61-77 8-24 (31)
12 PRK06886 hypothetical protein; 45.6 18 0.00039 32.5 2.6 40 50-95 238-283 (329)
13 PF13318 DUF4089: Protein of u 45.4 9.8 0.00021 25.8 0.7 37 83-123 5-41 (50)
14 PF08667 BetR: BetR domain; I 40.8 12 0.00027 30.6 0.8 28 60-93 40-67 (147)
15 smart00729 Elp3 Elongator prot 39.7 53 0.0012 24.7 4.1 40 70-114 102-149 (216)
16 PRK07203 putative chlorohydrol 38.2 25 0.00054 31.7 2.4 34 50-93 279-313 (442)
17 PF09950 DUF2184: Uncharacteri 27.5 11 0.00025 32.3 -1.5 47 60-120 28-74 (249)
18 PF12836 HHH_3: Helix-hairpin- 24.8 41 0.0009 22.9 1.2 26 69-97 11-37 (65)
19 KOG0484|consensus 24.6 73 0.0016 25.6 2.6 28 13-41 59-86 (125)
20 TIGR01626 ytfJ_HI0045 conserve 24.0 46 0.00099 27.8 1.5 37 53-96 70-107 (184)
21 TIGR02532 IV_pilin_GFxxxE prep 23.6 41 0.00088 19.7 0.8 11 67-77 2-12 (26)
22 COG1999 Uncharacterized protei 22.4 96 0.0021 25.9 3.1 33 84-126 105-137 (207)
23 smart00513 SAP Putative DNA-bi 21.2 98 0.0021 18.7 2.2 33 68-114 3-35 (35)
24 cd04777 HTH_MerR-like_sg1 Heli 21.0 57 0.0012 24.0 1.3 11 67-77 54-64 (107)
25 KOG0067|consensus 20.4 54 0.0012 31.4 1.3 26 62-94 99-124 (435)
26 TIGR02022 hutF formiminoglutam 20.3 72 0.0016 29.2 2.1 34 50-93 289-323 (455)
No 1
>PF01294 Ribosomal_L13e: Ribosomal protein L13e; InterPro: IPR001380 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_U 4A1B_U 4A1D_U 4A19_U.
Probab=100.00 E-value=2.5e-89 Score=564.12 Aligned_cols=177 Identities=68% Similarity=1.120 Sum_probs=122.0
Q ss_pred CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN 80 (178)
Q Consensus 1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~ 80 (178)
||||+|||||||++|+||||||++|++||++|++||++++|+|++|+|||||||||+|||+++|+||||||+||++|||+
T Consensus 2 ~ipn~Hf~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~prP~~g~LrPiVrcpt~rYn~k~r~GRGFsl~ELk~aGi~ 81 (179)
T PF01294_consen 2 VIPNNHFRKDWQRRVKTWFNQPARKKRRRQARQAKAAKIAPRPVSGPLRPIVRCPTVRYNTKVRLGRGFSLEELKAAGIS 81 (179)
T ss_dssp ------SSS-GGGS----THHHHHHHHHHHHHHHHHHHHTTS-SS--B--EEE-SSTTTTTSEEE-SSB-HHHHHHHT--
T ss_pred CcccccchhhhhhhhhhhcCcHHHHHHHHHHHHHHHHhcCCCCcchhhHhhhhccceecccccccCCCcCHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhhhcCCCccCCCCCCCCcc
Q psy2841 81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 160 (178)
Q Consensus 81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q~~~~vmPi~~~~~~~~~ 160 (178)
.++|+||||+||+||+|+|+|||++|||||++|+|||||||+++++| |+||+++||+++|+|+.|.+|||.+..+.+++
T Consensus 82 ~~~A~tiGI~VD~RR~n~s~Esl~~Nv~RLkeY~sklilfPrk~~~~-kkGdss~ee~k~a~q~~~~v~Pi~~~~~~~~~ 160 (179)
T PF01294_consen 82 KKYARTIGISVDHRRKNKSEESLQANVQRLKEYKSKLILFPRKAKKP-KKGDSSAEELKLATQLKGPVMPIRKVKKKEKA 160 (179)
T ss_dssp HHHHHHHTB-B-TT----SHHHHHHHHHHHHHHHHT-----SSS----TTT--TTHHHH-----HHHHS-----------
T ss_pred hHHccccCeeeccccCCccHHHHHHHHHHHHhhhhhceeecCccccc-cccCCCHHHHHHHHhhcCceeeecCCcCcccc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccCCcccccchhhHhhhC
Q psy2841 161 RIPSEAEKKFSAFQTLRM 178 (178)
Q Consensus 161 r~it~eek~~~ay~~LR~ 178 (178)
++||+||++|+||.+||+
T Consensus 161 r~it~eek~~~af~~LR~ 178 (179)
T PF01294_consen 161 RAITEEEKKFSAFRTLRM 178 (179)
T ss_dssp HHHHHHHTTS-HHHHHHH
T ss_pred ccCCHHHhhhhHHHHHhc
Confidence 999999999999999995
No 2
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=100.00 E-value=1.2e-85 Score=552.91 Aligned_cols=176 Identities=52% Similarity=0.906 Sum_probs=172.7
Q ss_pred CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN 80 (178)
Q Consensus 1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~ 80 (178)
||||+|||||||++|+|||||||+|++||++|++||+++||||+ ++|||||||||++||+++|+||||||+||++|||+
T Consensus 6 ~lpn~HF~K~Wq~~VktwFnQp~rK~rRR~aR~~KA~~i~prP~-~~LrPiVrcpT~ryn~k~R~GRGFtl~ELkaaGi~ 84 (212)
T PTZ00352 6 VLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRPV-ELLRPVVHGPTQRYNMKVRLGRGFTLEELKAAGLN 84 (212)
T ss_pred CCCchhhhHHHHhhcccccCchHHHHHHHHHHHHHHHHhCCCCc-ccCCcceecccccccceeeccCCCCHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999996 79999999999999999999999999999999999
Q ss_pred hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCC------CCCHHHHhh--hh-hhcCCCccC
Q psy2841 81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKG------EATPEERKV--AT-QLKGPLMPI 151 (178)
Q Consensus 81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkg------dss~ee~~~--a~-q~~~~vmPi 151 (178)
.++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++| ||| |+|+||++. |+ |+.|.+|||
T Consensus 85 ~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~y~skLvlFPrk~~k~-kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi 163 (212)
T PTZ00352 85 AQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKP-KKGFAGIPADTSKEEVVALPVKQNKNSEVIPF 163 (212)
T ss_pred HHHhcccceeeccccccCcHHHHHHHHHHHHHHHHheeeecCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHhhcCceecc
Confidence 99999999999999999999999999999999999999999999999 999 999999998 77 899999999
Q ss_pred CCCCCCCccccCCcccccchhhHhhhC
Q psy2841 152 RQSKPKSKARIPSEAEKKFSAFQTLRM 178 (178)
Q Consensus 152 ~~~~~~~~~r~it~eek~~~ay~~LR~ 178 (178)
.+..+.++++.||+||++|+||.+||+
T Consensus 164 ~~~~~~~~~r~it~eek~~~Ay~tLR~ 190 (212)
T PTZ00352 164 QRTPKREKARVITKEERAFNAYRTLRQ 190 (212)
T ss_pred cccccccccccCCHHHHHhhHHHHHHH
Confidence 999999999999999999999999985
No 3
>KOG3295|consensus
Probab=100.00 E-value=4.3e-85 Score=544.11 Aligned_cols=176 Identities=63% Similarity=1.054 Sum_probs=174.2
Q ss_pred CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN 80 (178)
Q Consensus 1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~ 80 (178)
||||+|||||||++|+||||||++|.+|+++|++||.+|||||++ +|||||||||++||+|+|+||||||+||++|||+
T Consensus 6 ~ipn~Hf~K~wq~~vktwfnqp~rk~rrr~~r~~kA~~i~PrP~~-~lRPvVrcptirYn~k~RaGRGFtleElk~AGi~ 84 (205)
T KOG3295|consen 6 MIPNNHFRKHWQKRVKTWFNQPARKTRRRQARQKKAVKIAPRPLS-LLRPVVRCPTIRYNRKVRAGRGFTLEELKAAGIS 84 (205)
T ss_pred cCCchhhHHHHHHHHHHHcCchHHHHHHHHHHHhhhhccCCCchh-hcCCcccccchhhhhhhhccCCccHHHHHHcCcc
Confidence 799999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhhhcCCCccCCCCCCCCcc
Q psy2841 81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 160 (178)
Q Consensus 81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q~~~~vmPi~~~~~~~~~ 160 (178)
.++|+||||+||+||+|+|.|+||.||||||+|+|||||||+++++| ++||||+||+++|+|+.|++|||.+....+++
T Consensus 85 k~~A~tiGIaVD~RRrn~s~E~lqaNvqRlKey~sklilfprk~~ap-kkGdSsaeel~~atq~~g~~mPi~~~~~~eEa 163 (205)
T KOG3295|consen 85 KKVARTIGIAVDHRRRNRSQEGLQANVQRLKEYKSKLILFPRKASAP-KKGDSSAEELKLATQLTGPVMPIVNVYAKEEA 163 (205)
T ss_pred HhhccceeeeecccccCccHHHHHHhHHHHHHhhcceEEeecCcCCC-cCCCCcHHHHHhhhhhcCCCcCccccchhHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccCCcccccchhhHhhhC
Q psy2841 161 RIPSEAEKKFSAFQTLRM 178 (178)
Q Consensus 161 r~it~eek~~~ay~~LR~ 178 (178)
+.+|+||++|+||++||+
T Consensus 164 ~~~t~e~k~f~Af~~lr~ 181 (205)
T KOG3295|consen 164 RVVTDEEKNFKAFRTLRL 181 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999984
No 4
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=100.00 E-value=3.3e-84 Score=545.73 Aligned_cols=171 Identities=49% Similarity=0.818 Sum_probs=166.9
Q ss_pred CCCCCcccccccch------hhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHH
Q psy2841 1 MIPNAHFHKDWQKY------IKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEI 74 (178)
Q Consensus 1 ~ipn~Hf~K~wq~r------VktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~El 74 (178)
||||+|||||||++ |+|||||||+|.+||++|++||++|||||+ ++|||||||||++||+++|+||||||+||
T Consensus 7 ~ipn~HF~K~Wq~~~~~~~~VktwFnQP~rK~rRR~~R~~KA~~iaPRP~-~~LRPiVrcPT~rYN~kvR~GRGFtl~EL 85 (218)
T PTZ00192 7 AIPHVHQRKHWNPCSSQKGNVKVFLNQPAQKHRRRRLRLLKAKKIFPRPL-KALRPQVNCPTVRHNMKQRLGRGFSLAEL 85 (218)
T ss_pred CCCchHHHhHHhhhcccCCceeeecCchHHHHHHHHHHHHHHHHhCCCCC-ccCCccccCCcccccceeeccCCcCHHHH
Confidence 69999999999999 999999999999999999999999999996 79999999999999999999999999999
Q ss_pred HHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhh---------hc
Q psy2841 75 RGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQ---------LK 145 (178)
Q Consensus 75 kaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q---------~~ 145 (178)
++|||+.++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++| +|||+++||++.|+| +.
T Consensus 86 k~aGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~Y~skLilFPrk~~k~-kkgds~~ee~k~a~Q~~~~~~~~~~~ 164 (218)
T PTZ00192 86 KAAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMSKLVLFPMNHKKV-QKGEAKEEEVKAATQDRSRFGDAAVG 164 (218)
T ss_pred HHcCCCHHHhcccceeeccccccccHHHHHHHHHHHHHHHHheeeeccccCCC-CCCCCCHHHHHHHHhhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999 66
Q ss_pred CCCccCCCCCCCCccccCCcccccchhhHhhhC
Q psy2841 146 GPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178 (178)
Q Consensus 146 ~~vmPi~~~~~~~~~r~it~eek~~~ay~~LR~ 178 (178)
|.+||| .++++.||+||++|+||.+||+
T Consensus 165 g~v~Pi-----~~~~~~it~eek~~~Ay~~LR~ 192 (218)
T PTZ00192 165 GVVTPS-----REAPRVVSKEERSKNVYAFLKK 192 (218)
T ss_pred Cccccc-----ccccccCCHHHHHhhHHHHHHH
Confidence 899999 4789999999999999999985
No 5
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-45 Score=280.99 Aligned_cols=113 Identities=51% Similarity=0.882 Sum_probs=111.3
Q ss_pred cccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCChhhhhhc
Q psy2841 8 HKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSV 87 (178)
Q Consensus 8 ~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~~~~A~ti 87 (178)
+|+||.+|++||||++++.+|+++++.+|++++|+|.+ .++|+|+|||..||+++|+|||||++||++||++.+.|++|
T Consensus 1 ~k~~~l~vk~h~d~~~k~~~~~~~~~~~a~~~a~~Pk~-~vk~p~~~~~~~~nrk~R~GRGFslgEl~aAGL~~~~AR~L 79 (113)
T COG4352 1 RKHWQLRVKVHFDQAGKKVSRRNARLTKAAKIAPRPKA-LVKPPVRAPTGKYNRKVRAGRGFSLGELKAAGLSARKARTL 79 (113)
T ss_pred CchHHHHHHHHhChhhhHHHHHhhhhhhccccCCCcHH-HccCCccCCccCcccceeccCCccHHHHHHcCcCHHHHHhh
Confidence 58999999999999999999999999999999999995 89999999999999999999999999999999999999999
Q ss_pred ceeeccccCCCChHHHHHHHHHHHHHhhcceeec
Q psy2841 88 GIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121 (178)
Q Consensus 88 GI~VD~RRknks~Esl~~NV~RLk~y~sklilfP 121 (178)
||+||+||+|.++|++++||+||++|++++++||
T Consensus 80 GI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~p 113 (113)
T COG4352 80 GIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP 113 (113)
T ss_pred CcceehhhccCCHHHHHHHHHHHHHHHhcCccCC
Confidence 9999999999999999999999999999999998
No 6
>PRK12277 50S ribosomal protein L13e; Provisional
Probab=100.00 E-value=1.9e-38 Score=234.70 Aligned_cols=73 Identities=37% Similarity=0.644 Sum_probs=69.9
Q ss_pred CCCCCCCCCceeeCCcccccc-----ccccCCCCCHHHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhh
Q psy2841 41 PRPAAGPLRPIVRCPTVRYHK-----RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKS 115 (178)
Q Consensus 41 PrP~~~~lrPiVrcpt~ryn~-----k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~s 115 (178)
+.|+ ++|||||+|||++||+ ++|+||||||+||++|||++++|+||||+||+||+|+|+| ||||||+|+|
T Consensus 2 ~~~~-~~lrPiVr~Pt~ryn~gg~~~k~R~GRGFsl~ELkaaGi~~~~ArtiGI~VD~RRrn~~~e----NVerLk~y~s 76 (83)
T PRK12277 2 REEM-EPPKAIVKRPNYRFEYGGKRKDKRIGRGFSIGELEAAGLDIKNARKLGIRVDKRRKTVHEE----NVEALKKFLE 76 (83)
T ss_pred CCCc-CCCCCceeCCceecccCCCCCceeecCCcCHHHHHHcCCCHHHhcccCeeecccccCCCHH----HHHHHHHHHH
Confidence 5788 5899999999999999 9999999999999999999999999999999999999977 9999999999
Q ss_pred cce
Q psy2841 116 KLI 118 (178)
Q Consensus 116 kli 118 (178)
+|-
T Consensus 77 kL~ 79 (83)
T PRK12277 77 QLG 79 (83)
T ss_pred Hhc
Confidence 985
No 7
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=59.57 E-value=12 Score=28.38 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcce
Q psy2841 72 EEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLI 118 (178)
Q Consensus 72 ~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~skli 118 (178)
.-|..+||+..+|-.| ..-..|.+..||+.|.+++.+.+
T Consensus 76 ~~l~e~GLp~~l~~~l--------~g~d~e~~~~~v~~l~~~~~~~v 114 (125)
T PF14265_consen 76 KVLAEKGLPAELADFL--------VGDDEEETKANVKALKKLFNKAV 114 (125)
T ss_pred HHHHHcCCCHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567799999988877 24478999999999999987765
No 8
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=56.63 E-value=9.9 Score=30.22 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=59.9
Q ss_pred HHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCChhhhhhcceeeccccC------CCChHHHHH
Q psy2841 32 RIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRR------SKSMESLQL 105 (178)
Q Consensus 32 R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~RRk------nks~Esl~~ 105 (178)
+..+-..-++.+++ .+.++|+.|.. ....+.-|+.-. --|++..+-...|.++|+-|+ .+-..++++
T Consensus 21 ~~~~~~~~a~~~a~-~Pk~~vk~p~~--~~~~~~nrk~R~----GRGFslgEl~aAGL~~~~AR~LGI~VD~RRr~~~~e 93 (113)
T COG4352 21 RRNARLTKAAKIAP-RPKALVKPPVR--APTGKYNRKVRA----GRGFSLGELKAAGLSARKARTLGIAVDHRRRNRNPE 93 (113)
T ss_pred HHhhhhhhccccCC-CcHHHccCCcc--CCccCcccceec----cCCccHHHHHHcCcCHHHHHhhCcceehhhccCCHH
Confidence 44444556777885 78899998764 444445555333 479999999999999999986 456678899
Q ss_pred HHHHHHHHhhcce
Q psy2841 106 NIQRLKEYKSKLI 118 (178)
Q Consensus 106 NV~RLk~y~skli 118 (178)
|+|+|++|...|.
T Consensus 94 n~eal~k~ik~ll 106 (113)
T COG4352 94 NFEALVKRIKELL 106 (113)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 9
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=55.18 E-value=6.6 Score=26.17 Aligned_cols=11 Identities=64% Similarity=0.933 Sum_probs=7.6
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
=||||+|++..
T Consensus 13 lGfsL~eI~~~ 23 (65)
T PF09278_consen 13 LGFSLEEIREL 23 (65)
T ss_dssp TT--HHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 39999999986
No 10
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=53.24 E-value=7.3 Score=22.17 Aligned_cols=11 Identities=55% Similarity=0.709 Sum_probs=8.9
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
|||||=|+-.+
T Consensus 1 ~GFTLiE~~v~ 11 (20)
T PF07963_consen 1 KGFTLIELLVA 11 (20)
T ss_pred CceeHHHHHHH
Confidence 79999998654
No 11
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=47.21 E-value=9.4 Score=23.30 Aligned_cols=17 Identities=53% Similarity=0.665 Sum_probs=5.7
Q ss_pred cccccCCCCCHHHHHHc
Q psy2841 61 KRVRAGRGFTLEEIRGA 77 (178)
Q Consensus 61 ~k~R~GRGFsl~Elkaa 77 (178)
...+.=+||||=|+-.|
T Consensus 8 ~~~~~~~GFTLiEllVa 24 (31)
T PF13544_consen 8 RRRRRQRGFTLIELLVA 24 (31)
T ss_dssp ----------HHHHHHH
T ss_pred ccccccCCccHHHHHHH
Confidence 34456689999998765
No 12
>PRK06886 hypothetical protein; Validated
Probab=45.55 E-value=18 Score=32.48 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=26.6
Q ss_pred ceeeCCcc-----ccccccccCCCCC-HHHHHHcCCChhhhhhcceeecccc
Q psy2841 50 PIVRCPTV-----RYHKRVRAGRGFT-LEEIRGAGLNARFARSVGIAVDARR 95 (178)
Q Consensus 50 PiVrcpt~-----ryn~k~R~GRGFs-l~ElkaaGi~~~~A~tiGI~VD~RR 95 (178)
.||.||+. ........|||++ +.||.++||++ |+..|-=+
T Consensus 238 ~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V------~lGtDnv~ 283 (329)
T PRK06886 238 MVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITV------ALGTDNIC 283 (329)
T ss_pred eEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeE------EEecCCCc
Confidence 47889874 1122345689975 78999999864 55566433
No 13
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=45.36 E-value=9.8 Score=25.82 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=32.4
Q ss_pred hhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeeccc
Q psy2841 83 FARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRR 123 (178)
Q Consensus 83 ~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk 123 (178)
.|..+|.++|.-++. .+..|.+|+..+-+=+.=||..
T Consensus 5 ~a~llgL~l~~~~r~----~V~~n~~ri~~mA~~v~~fpL~ 41 (50)
T PF13318_consen 5 MAALLGLPLDEEWRP----GVVANFERIAAMAQLVMEFPLP 41 (50)
T ss_pred HHHHcCCCCCHHHHH----HHHHHHHHHHHHHHHHHcCCCC
Confidence 578899999998877 8999999999999988888864
No 14
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=40.77 E-value=12 Score=30.62 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=24.0
Q ss_pred ccccccCCCCCHHHHHHcCCChhhhhhcceeecc
Q psy2841 60 HKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDA 93 (178)
Q Consensus 60 n~k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~ 93 (178)
+.|++-...||++||+.. |..+|+++|+
T Consensus 40 ~RKL~G~~~ftl~EI~~I------a~~fgvS~d~ 67 (147)
T PF08667_consen 40 YRKLNGKSPFTLEEIKKI------AKHFGVSPDE 67 (147)
T ss_pred HHHhcCCCCCCHHHHHHH------HHHhCcCHHH
Confidence 779999999999999864 7888888875
No 15
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=39.67 E-value=53 Score=24.70 Aligned_cols=40 Identities=28% Similarity=0.503 Sum_probs=31.6
Q ss_pred CHHHHHHcCCChhhhhhcceeecc--------ccCCCChHHHHHHHHHHHHHh
Q psy2841 70 TLEEIRGAGLNARFARSVGIAVDA--------RRRSKSMESLQLNIQRLKEYK 114 (178)
Q Consensus 70 sl~ElkaaGi~~~~A~tiGI~VD~--------RRknks~Esl~~NV~RLk~y~ 114 (178)
.+++|+++|++ .+.|++|. -+++.+.+....+++.|+++-
T Consensus 102 ~~~~l~~~~~~-----~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 149 (216)
T smart00729 102 LLEALKEAGVN-----RVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAG 149 (216)
T ss_pred HHHHHHHcCCC-----eEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 36778999885 68888884 345667788999999999987
No 16
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=38.17 E-value=25 Score=31.75 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=24.9
Q ss_pred ceeeCCccccccccccCCC-CCHHHHHHcCCChhhhhhcceeecc
Q psy2841 50 PIVRCPTVRYHKRVRAGRG-FTLEEIRGAGLNARFARSVGIAVDA 93 (178)
Q Consensus 50 PiVrcpt~ryn~k~R~GRG-Fsl~ElkaaGi~~~~A~tiGI~VD~ 93 (178)
-|++||+ -|+ ++|.| +.+.|+.++||+ +||..|-
T Consensus 279 ~v~~~P~--sn~--~l~~g~~p~~~~~~~Gv~------v~lGtD~ 313 (442)
T PRK07203 279 FVVHNPE--SNM--GNAVGYNPVLEMIKNGIL------LGLGTDG 313 (442)
T ss_pred eEEECch--hhh--hcccCCCCHHHHHHCCCe------EEEcCCC
Confidence 4788886 344 45666 678999999986 6677774
No 17
>PF09950 DUF2184: Uncharacterized protein conserved in bacteria (DUF2184); InterPro: IPR020049 This entry is represented by Bacteriophage T1, Orf47. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.51 E-value=11 Score=32.29 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=33.7
Q ss_pred ccccccCCCCCHHHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceee
Q psy2841 60 HKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120 (178)
Q Consensus 60 n~k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilf 120 (178)
-..+-.|-|+|++||++| ..+|+++|-++.. ....+ +.....+++++
T Consensus 28 v~~~g~~~~~t~~El~~a-------~~~G~~l~~~K~~----aar~a---~~~~~n~~~~~ 74 (249)
T PF09950_consen 28 VFLWGIGYGYTIQELAAA-------QAAGRPLDTRKAE----AARRA---YEMKINKIAFY 74 (249)
T ss_pred eEEEEEEEEEcHHHHHHH-------HHhCCCchHHHHH----HHHHH---HHhhhhcEEEE
Confidence 345678889999999997 6789999988654 33333 33566677766
No 18
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=24.84 E-value=41 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=18.8
Q ss_pred CCHHHHHHc-CCChhhhhhcceeeccccCC
Q psy2841 69 FTLEEIRGA-GLNARFARSVGIAVDARRRS 97 (178)
Q Consensus 69 Fsl~Elkaa-Gi~~~~A~tiGI~VD~RRkn 97 (178)
-|.+||.+. ||+...|..| |++|.++
T Consensus 11 as~~eL~~lpgi~~~~A~~I---v~~R~~~ 37 (65)
T PF12836_consen 11 ASAEELQALPGIGPKQAKAI---VEYREKN 37 (65)
T ss_dssp S-HHHHHTSTT--HHHHHHH---HHHHHHH
T ss_pred CCHHHHHHcCCCCHHHHHHH---HHHHHhC
Confidence 488999999 9999999887 7777554
No 19
>KOG0484|consensus
Probab=24.61 E-value=73 Score=25.61 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=18.8
Q ss_pred chhhhhcCchhhhHHHHHHHHHHHHhhCC
Q psy2841 13 KYIKCWFNQPARKFRRRQARIKKAKEIAP 41 (178)
Q Consensus 13 ~rVktwFnQp~rK~rRr~~R~~KA~~i~P 41 (178)
-||.+||. --|.+-|++.|.+-|+.-+-
T Consensus 59 ARVQVWFQ-NRRAKfRKQEr~a~~~~~~~ 86 (125)
T KOG0484|consen 59 ARVQVWFQ-NRRAKFRKQERAAIAKMAAK 86 (125)
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHHHhhhh
Confidence 38999995 45556677777666654443
No 20
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=23.97 E-value=46 Score=27.83 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=29.1
Q ss_pred eCCccccccccccCCCCCHHHHHHcCCCh-hhhhhcceeeccccC
Q psy2841 53 RCPTVRYHKRVRAGRGFTLEEIRGAGLNA-RFARSVGIAVDARRR 96 (178)
Q Consensus 53 rcpt~ryn~k~R~GRGFsl~ElkaaGi~~-~~A~tiGI~VD~RRk 96 (178)
+||.-+-|.-. +++|+++|++. +|--|+||.+|-...
T Consensus 70 wc~~c~~e~P~-------l~~l~~~~~~~~~y~~t~~IN~dd~~~ 107 (184)
T TIGR01626 70 RTSAKEXNASL-------IDAIKAAKFPPVKYQTTTIINADDAIV 107 (184)
T ss_pred CCChhhccchH-------HHHHHHcCCCcccccceEEEECccchh
Confidence 56666665553 89999999998 889999999987643
No 21
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=23.58 E-value=41 Score=19.72 Aligned_cols=11 Identities=55% Similarity=0.700 Sum_probs=8.8
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
||||+=|+-.+
T Consensus 2 ~GfTLiEllia 12 (26)
T TIGR02532 2 RGFTLIELLVV 12 (26)
T ss_pred CceeHHHHHHH
Confidence 79999998643
No 22
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=22.39 E-value=96 Score=25.91 Aligned_cols=33 Identities=33% Similarity=0.333 Sum_probs=24.8
Q ss_pred hhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchh
Q psy2841 84 ARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKK 126 (178)
Q Consensus 84 A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k 126 (178)
.+-+=|+||+.|-+ -++|++|.+ .-..|+-..-
T Consensus 105 v~vv~itvDPerDt---------p~~lk~Y~~-~~~~~~~~~l 137 (207)
T COG1999 105 VQVVFITVDPERDT---------PEVLKKYAE-LNFDPRWIGL 137 (207)
T ss_pred EEEEEEEECCCCCC---------HHHHHHHhc-ccCCCCeeee
Confidence 35678999999977 678999999 5556555443
No 23
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=21.18 E-value=98 Score=18.72 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCCHHHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHh
Q psy2841 68 GFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYK 114 (178)
Q Consensus 68 GFsl~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~ 114 (178)
.+|..||++. .+..|+++.-.+ +.=|+||.+|.
T Consensus 3 ~l~~~~Lk~~------l~~~gl~~~G~K--------~~Lv~Rl~~~~ 35 (35)
T smart00513 3 KLKVSELKDE------LKKRGLSTSGTK--------AELVDRLLEAL 35 (35)
T ss_pred cCcHHHHHHH------HHHcCCCCCCCH--------HHHHHHHHHhC
Confidence 4677788765 477888876643 23467888773
No 24
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.96 E-value=57 Score=24.03 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=9.6
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
=||||+|++..
T Consensus 54 ~G~sL~eI~~~ 64 (107)
T cd04777 54 LGFSLIEIQKI 64 (107)
T ss_pred CCCCHHHHHHH
Confidence 49999999985
No 25
>KOG0067|consensus
Probab=20.36 E-value=54 Score=31.37 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=21.4
Q ss_pred ccccCCCCCHHHHHHcCCChhhhhhcceeeccc
Q psy2841 62 RVRAGRGFTLEEIRGAGLNARFARSVGIAVDAR 94 (178)
Q Consensus 62 k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~R 94 (178)
-+|+|+|+++.+|++|+ -+||+|=.=
T Consensus 99 ~~rig~g~dn~dikaAs-------eL~iavC~i 124 (435)
T KOG0067|consen 99 IVRIGSGYDNIDIKAAS-------ELGIAVCNI 124 (435)
T ss_pred eeeeccccchhhhhhhh-------hheeeeecc
Confidence 46899999999999985 789988543
No 26
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=20.30 E-value=72 Score=29.24 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=25.4
Q ss_pred ceeeCCccccccccccCCC-CCHHHHHHcCCChhhhhhcceeecc
Q psy2841 50 PIVRCPTVRYHKRVRAGRG-FTLEEIRGAGLNARFARSVGIAVDA 93 (178)
Q Consensus 50 PiVrcpt~ryn~k~R~GRG-Fsl~ElkaaGi~~~~A~tiGI~VD~ 93 (178)
.|++||+- |+ ++|.| +.+.|+.++|++ +||..|.
T Consensus 289 ~v~~~P~s--n~--~lg~g~~pi~~l~~~Gv~------v~lGTD~ 323 (455)
T TIGR02022 289 VAGLCPTT--EA--NLGDGIFPAVDFVAAGGR------FGIGSDS 323 (455)
T ss_pred eEEEChhh--hc--cccCCCCCHHHHHHCCCe------EEEECCC
Confidence 47889873 44 45666 789999999975 6777784
Done!