Query psy2841
Match_columns 178
No_of_seqs 121 out of 283
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 18:17:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_U RPL13, 60S ribosomal pr 100.0 2.5E-89 8.7E-94 572.4 9.0 176 1-178 6-183 (206)
2 3u5e_L 60S ribosomal protein L 100.0 5.3E-83 1.8E-87 531.9 12.3 165 1-178 8-172 (199)
3 2ev1_A Hypothetical protein RV 66.2 1.5 5.1E-05 36.8 0.5 14 65-78 48-61 (222)
4 1q08_A Zn(II)-responsive regul 35.9 14 0.00049 25.3 1.4 11 67-77 15-25 (99)
5 1y10_A Hypothetical protein RV 27.6 16 0.00054 32.5 0.6 21 70-90 68-93 (407)
6 4dac_A Computationally designe 27.5 34 0.0011 20.1 1.8 16 102-117 5-20 (28)
7 1b0n_B Protein (SINI protein); 26.5 26 0.0009 23.5 1.4 11 67-77 25-35 (57)
8 4hde_A SCO1/SENC family lipopr 25.5 36 0.0012 25.2 2.2 25 85-118 70-94 (170)
9 1meo_A Phosophoribosylglycinam 24.9 87 0.003 25.0 4.5 56 65-121 8-86 (209)
10 1g6u_A Domain swapped dimer; d 23.8 32 0.0011 22.3 1.4 11 67-77 15-25 (48)
No 1
>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U
Probab=100.00 E-value=2.5e-89 Score=572.44 Aligned_cols=176 Identities=39% Similarity=0.618 Sum_probs=174.1
Q ss_pred CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN 80 (178)
Q Consensus 1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~ 80 (178)
||||+|||||||++|+||||||++|.+||++|++||+++||||++ +|||||||||+|||+++|+||||||+||++|||+
T Consensus 6 ~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcPT~rYn~kvR~GRGFsl~Elk~aGi~ 84 (206)
T 4a18_U 6 QLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQTQRYNKSTKLGRGFTLQELKAAGIS 84 (206)
T ss_dssp CCCCCCSSSCGGGSCCCCTHHHHHHHHHHHHHHHHHHHHTTSCSS-CBCCEEECSSTTTTTSEEECSSBCHHHHHHHTCC
T ss_pred cCCCccccchHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCCCcc-cccCceeCCcccccccccCCCCcCHHHHHHcCCC
Confidence 799999999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCC--CCCHHHHhhhhhhcCCCccCCCCCCCC
Q psy2841 81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKG--EATPEERKVATQLKGPLMPIRQSKPKS 158 (178)
Q Consensus 81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkg--dss~ee~~~a~q~~~~vmPi~~~~~~~ 158 (178)
.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++| ||| |||+||+++|+|+.|.+|||.+..+.+
T Consensus 85 ~~~A~tiGI~VD~RR~nkS~Esl~~Nv~rLk~y~sklIlFPrk~~k~-kkG~~Dss~ee~k~a~q~~g~vmPi~~~~~~~ 163 (206)
T 4a18_U 85 AAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKA-KKGLVNDTADTSSAAQNALQTSVPLPSVSKRE 163 (206)
T ss_dssp HHHHHHHTBCBCTTCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC-TTTTCCCTTHHHHCCCCCHHHHSCCCCCCCCC
T ss_pred HHHhcccCeeeccccccccHhHHHHHHHHHHHHHHheEEeeCccccc-ccCCCCCCHHHHHHHHHhcccccCccCccccc
Confidence 99999999999999999999999999999999999999999999999 999 999999999999999999999999999
Q ss_pred ccccCCcccccchhhHhhhC
Q psy2841 159 KARIPSEAEKKFSAFQTLRM 178 (178)
Q Consensus 159 ~~r~it~eek~~~ay~~LR~ 178 (178)
++++||+||++|+||.+||+
T Consensus 164 ~~r~it~eek~~~ay~~LR~ 183 (206)
T 4a18_U 164 KAVSNIAELRKKKVYRIIRQ 183 (206)
T ss_dssp CCHHHHHHHTTSCHHHHHHH
T ss_pred ccccCChhhhcccHHHHHHH
Confidence 99999999999999999985
No 2
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=100.00 E-value=5.3e-83 Score=531.88 Aligned_cols=165 Identities=48% Similarity=0.795 Sum_probs=162.2
Q ss_pred CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN 80 (178)
Q Consensus 1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~ 80 (178)
||||+|||||||++|+||||||++|.+||++|++||+++||||++ +|||||||||++||+++|+||||||+||++|||+
T Consensus 8 ~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcpT~rYn~kvR~GRGFsl~ELk~aGi~ 86 (199)
T 3u5e_L 8 PILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLT 86 (199)
T ss_dssp CCCCCCCCSSGGGGEEECTTHHHHHHHHHHHHHHHHHHTTTSCSS-CBCCEEECCHHHHTTSEEECSCCCHHHHHHTTCC
T ss_pred cCCCccccchHHHHHhhhcCChhHHHHHHHHHHHHHHHhCCCCcc-cccCceecCcccccccccCCCCcCHHHHHHcCCC
Confidence 799999999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhhhcCCCccCCCCCCCCcc
Q psy2841 81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 160 (178)
Q Consensus 81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q~~~~vmPi~~~~~~~~~ 160 (178)
.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++| +|| |+|+.|.+|||.+..+.+++
T Consensus 87 ~k~A~tiGI~VD~RR~nks~Esl~~NVqrLk~y~sklilFPrk~~~~-kkG---------atq~~g~vmPi~~~~~~~~~ 156 (199)
T 3u5e_L 87 AAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAP-EAE---------QVLSAAATFPIAQPATDVEA 156 (199)
T ss_dssp HHHHHHTTBCCCTTCCCCBHHHHHHHHHHHHHHHHTEEECCSSSCCC-CCC---------CCCCSTTTSCCCCCCCSCSE
T ss_pred HHHhcccCeeeccccccccHHHHHHHHHHHHHHHhheeEeccccccc-ccc---------cccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999 999 79999999999999999999
Q ss_pred ccCCcccccchhhHhhhC
Q psy2841 161 RIPSEAEKKFSAFQTLRM 178 (178)
Q Consensus 161 r~it~eek~~~ay~~LR~ 178 (178)
++||+| +|+||.+||+
T Consensus 157 r~it~e--~~~ay~~LR~ 172 (199)
T 3u5e_L 157 RAVQDN--GESAFRTLRL 172 (199)
T ss_dssp ECCCCC--CCCSHHHHHH
T ss_pred cccChh--hhhHHHHHHH
Confidence 999999 9999999985
No 3
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=66.18 E-value=1.5 Score=36.76 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=11.9
Q ss_pred cCCCCCHHHHHHcC
Q psy2841 65 AGRGFTLEEIRGAG 78 (178)
Q Consensus 65 ~GRGFsl~ElkaaG 78 (178)
.|||||++|++++.
T Consensus 48 ~~~G~t~~~i~~a~ 61 (222)
T 2ev1_A 48 LEQGITPDEIRATN 61 (222)
T ss_dssp HHTTCCHHHHHHSS
T ss_pred HHcCCCHHHHHHHh
Confidence 58999999999875
No 4
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=35.93 E-value=14 Score=25.32 Aligned_cols=11 Identities=55% Similarity=0.830 Sum_probs=9.6
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
=||||+|++..
T Consensus 15 lGfsL~eIk~~ 25 (99)
T 1q08_A 15 LGFSLESIREL 25 (99)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 39999999985
No 5
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=27.63 E-value=16 Score=32.50 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=11.1
Q ss_pred CHHHHHH-cCCChhhh----hhccee
Q psy2841 70 TLEEIRG-AGLNARFA----RSVGIA 90 (178)
Q Consensus 70 sl~Elka-aGi~~~~A----~tiGI~ 90 (178)
|+.|+.+ +|++...| +.+|.+
T Consensus 68 t~~~~a~~~g~~~~~~~r~wralGf~ 93 (407)
T 1y10_A 68 SAREISENYGVDLELLQRVQRAVGLA 93 (407)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHcCCC
Confidence 5555543 36665555 345654
No 6
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=27.54 E-value=34 Score=20.05 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhcc
Q psy2841 102 SLQLNIQRLKEYKSKL 117 (178)
Q Consensus 102 sl~~NV~RLk~y~skl 117 (178)
-|++||.||..-..||
T Consensus 5 kldanvkrlekevgkl 20 (28)
T 4dac_A 5 KLDANVKRLEKEVGKL 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhh
Confidence 4789999998766554
No 7
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=26.48 E-value=26 Score=23.48 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=9.0
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
=|||++|++.-
T Consensus 25 lGlsleEIref 35 (57)
T 1b0n_B 25 ANISPEEIRKY 35 (57)
T ss_dssp TTCCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 38999999874
No 8
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=25.51 E-value=36 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=19.4
Q ss_pred hhcceeeccccCCCChHHHHHHHHHHHHHhhcce
Q psy2841 85 RSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLI 118 (178)
Q Consensus 85 ~tiGI~VD~RRknks~Esl~~NV~RLk~y~skli 118 (178)
..|+|+||+-|-+ .++|++|..+.-
T Consensus 70 ~~v~isvDp~~Dt---------p~~l~~y~~~~~ 94 (170)
T 4hde_A 70 QFVSFSVDPDLDK---------PENLKAFIQKFT 94 (170)
T ss_dssp EEEEEESCTTTCC---------HHHHHHHHTTTC
T ss_pred eeEeeecCccccc---------HHHHHHHHHHcC
Confidence 5789999998754 567889988753
No 9
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=24.85 E-value=87 Score=25.04 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=36.2
Q ss_pred cCCCCCHHHHHHc------CCC-------------hhhhhhcceee---ccccCCCChHHH-HHHHHHHHHHhhcceeec
Q psy2841 65 AGRGFTLEEIRGA------GLN-------------ARFARSVGIAV---DARRRSKSMESL-QLNIQRLKEYKSKLIVFP 121 (178)
Q Consensus 65 ~GRGFsl~Elkaa------Gi~-------------~~~A~tiGI~V---D~RRknks~Esl-~~NV~RLk~y~sklilfP 121 (178)
.|.|-+|+.|-.+ |.. ...|...||+| ++..-+ +.|.+ +.-++.|++|.-.||+.-
T Consensus 8 SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~-~r~~~~~~~~~~l~~~~~Dliv~a 86 (209)
T 1meo_A 8 SGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK-NRVEFDSAIDLVLEEFSIDIVCLA 86 (209)
T ss_dssp SSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSS-SHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCchHHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECccccC-chhhhhHHHHHHHHhcCCCEEEEc
Confidence 4788888887654 322 25689999998 554433 33333 344677888888887654
No 10
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.76 E-value=32 Score=22.31 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=9.1
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
-|||.|||.+.
T Consensus 15 egfspeelaal 25 (48)
T 1g6u_A 15 EGFSPEELAAL 25 (48)
T ss_dssp TTCSHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 49999999764
Done!