Query psy2841
Match_columns 178
No_of_seqs 121 out of 283
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 18:17:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2841.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2841hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q08a_ a.6.1.3 (A:) Transcrip 50.4 2.9 0.00021 28.1 1.4 11 67-77 15-25 (94)
2 d2j5ya1 a.8.1.2 (A:1-53) PAB { 33.3 8.5 0.00062 24.3 1.5 26 71-102 15-40 (53)
3 d1xzoa1 c.47.1.10 (A:3-174) Th 25.8 26 0.0019 24.2 3.3 36 71-118 58-93 (172)
4 d1s7oa_ a.4.13.3 (A:) Hypothet 23.9 10 0.00073 26.2 0.6 48 61-122 25-72 (106)
5 d1jmsa3 a.60.12.1 (A:243-302) 23.2 15 0.0011 23.1 1.4 23 67-89 27-51 (60)
6 d2i9ua2 c.1.9.9 (A:67-376) Gua 20.8 15 0.0011 27.1 1.2 36 50-94 221-256 (310)
7 d1kfta_ a.60.2.3 (A:) Excinucl 20.0 17 0.0013 22.0 1.1 18 70-87 32-50 (56)
8 d1uf5a_ d.160.1.2 (A:) N-carba 18.7 21 0.0015 26.6 1.6 23 101-123 18-47 (303)
9 d1xsva_ a.4.13.3 (A:) Hypothet 18.7 16 0.0011 25.2 0.7 46 62-121 28-73 (106)
10 d1vqoi1 a.4.7.1 (I:71-140) Rib 18.5 16 0.0012 23.6 0.7 10 83-92 61-70 (70)
No 1
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=50.38 E-value=2.9 Score=28.08 Aligned_cols=11 Identities=55% Similarity=0.830 Sum_probs=9.4
Q ss_pred CCCCHHHHHHc
Q psy2841 67 RGFTLEEIRGA 77 (178)
Q Consensus 67 RGFsl~Elkaa 77 (178)
=||||+|++..
T Consensus 15 lGFsL~EI~~l 25 (94)
T d1q08a_ 15 LGFSLESIREL 25 (94)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 39999999975
No 2
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=33.26 E-value=8.5 Score=24.26 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=16.3
Q ss_pred HHHHHHcCCChhhhhhcceeeccccCCCChHH
Q psy2841 71 LEEIRGAGLNARFARSVGIAVDARRRSKSMES 102 (178)
Q Consensus 71 l~ElkaaGi~~~~A~tiGI~VD~RRknks~Es 102 (178)
+.|||++||+.++ .+|.=-+-+.+|+
T Consensus 15 I~eLK~~GIts~~------y~~~InkaKTVEg 40 (53)
T d2j5ya1 15 IAELKKAGITSDF------YFNAINKAKTVEE 40 (53)
T ss_dssp HHHHHHTTCCCHH------HHHHHHHCCSHHH
T ss_pred HHHHHHcCccHHH------HHHHHHhhhhHHH
Confidence 5799999996654 3444344455554
No 3
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}
Probab=25.76 E-value=26 Score=24.25 Aligned_cols=36 Identities=14% Similarity=0.395 Sum_probs=25.6
Q ss_pred HHHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcce
Q psy2841 71 LEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLI 118 (178)
Q Consensus 71 l~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~skli 118 (178)
.+++.+.|.+ -..++|+||+-|.+ .+.|++|.+..-
T Consensus 58 ~~~~~~~~~~---v~~v~isiDp~~Dt---------p~~l~~y~~~~~ 93 (172)
T d1xzoa1 58 QKKLKAENID---VRIISFSVDPENDK---------PKQLKKFAANYP 93 (172)
T ss_dssp HHHHHHTTCC---CEEEEEESCTTTCC---------HHHHHHHHTTSC
T ss_pred hhhhcccccc---ccccccccccccch---------HHHHHHHHHHhc
Confidence 3566666754 36799999997754 355888988764
No 4
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=23.94 E-value=10 Score=26.18 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=32.4
Q ss_pred cccccCCCCCHHHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecc
Q psy2841 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPR 122 (178)
Q Consensus 61 ~k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPr 122 (178)
..++.--|+|.+|+ |..+|||...=+. .+..=.+.|++|-+||.++-+
T Consensus 25 ~~L~y~~~ls~~EI---------A~~lgiS~~aV~~-----~l~RA~~~L~~~e~kL~l~~~ 72 (106)
T d1s7oa_ 25 IELYYADDYSLAEI---------ADEFGVSRQAVYD-----NIKRTEKILETYEMKLHMYSD 72 (106)
T ss_dssp HHHHHHTCCCHHHH---------HHHHTCCHHHHHH-----HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHcCCCHHHH---------HHHHCcCHHHHHH-----HHHHHHHHHHHHHHHHChHHH
Confidence 34455568888887 4567777655432 355667889999999986633
No 5
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.24 E-value=15 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=16.1
Q ss_pred CCC-CHHHHHHcC-CChhhhhhcce
Q psy2841 67 RGF-TLEEIRGAG-LNARFARSVGI 89 (178)
Q Consensus 67 RGF-sl~ElkaaG-i~~~~A~tiGI 89 (178)
+|| |++||++-+ +...-++.||+
T Consensus 27 ~Gi~ti~dL~~~~~~~Lt~~Q~iGL 51 (60)
T d1jmsa3 27 MGFRTLSKIQSDKSLRFTQMQKAGF 51 (60)
T ss_dssp TTCCSHHHHHHCSSCCCCHHHHHHH
T ss_pred hCCCCHHHHHhcCcccCCHHHHHHH
Confidence 476 999999753 45666667775
No 6
>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}
Probab=20.83 E-value=15 Score=27.15 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=24.3
Q ss_pred ceeeCCccccccccccCCCCCHHHHHHcCCChhhhhhcceeeccc
Q psy2841 50 PIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDAR 94 (178)
Q Consensus 50 PiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~R 94 (178)
.||+||+- |..+..|- ..+.+|..+||+ +||..|.-
T Consensus 221 ~vv~cP~s--n~~l~~g~-~pv~~l~~~Gv~------v~lGTD~~ 256 (310)
T d2i9ua2 221 TIVHCPTS--NFNLGSGM-MPVRKYLNLGIN------VVLGSDIS 256 (310)
T ss_dssp EEEECHHH--HHHTTCCC-CCHHHHHHTTCE------EEECCCBT
T ss_pred EEEEeecc--cccccCCc-ccccchhccCce------EEEecCCC
Confidence 57889853 44433332 679999999964 67777753
No 7
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.04 E-value=17 Score=21.96 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=13.8
Q ss_pred CHHHHHHc-CCChhhhhhc
Q psy2841 70 TLEEIRGA-GLNARFARSV 87 (178)
Q Consensus 70 sl~Elkaa-Gi~~~~A~ti 87 (178)
|.+||.+. ||..+.|..|
T Consensus 32 s~eeL~~v~GIg~~~A~~I 50 (56)
T d1kfta_ 32 SVEEIAKVPGISQGLAEKI 50 (56)
T ss_dssp CHHHHTTSSSTTSHHHHHH
T ss_pred hHHHHHhcCCCCHHHHHHH
Confidence 67777766 8888888765
No 8
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}
Probab=18.74 E-value=21 Score=26.62 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHh-------hcceeeccc
Q psy2841 101 ESLQLNIQRLKEYK-------SKLIVFPRR 123 (178)
Q Consensus 101 Esl~~NV~RLk~y~-------sklilfPrk 123 (178)
|+.+.|++|+.++. ++||+||--
T Consensus 18 ~~~~~~l~r~~~li~~A~~~gadlvvfPE~ 47 (303)
T d1uf5a_ 18 ETREQVVVRLLDMLTKAASRGANFIVFPEL 47 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEECCTT
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcCCC
Confidence 57789999998884 489999963
No 9
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=18.67 E-value=16 Score=25.16 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=31.1
Q ss_pred ccccCCCCCHHHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeec
Q psy2841 62 RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121 (178)
Q Consensus 62 k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfP 121 (178)
..+.=-|+|..|+. ..+|||...=+. .+..=.+.|++|.+||.++-
T Consensus 28 ~L~~~e~ls~~EIA---------~~lgiS~~aV~~-----~l~Ra~~~L~~ye~kL~l~~ 73 (106)
T d1xsva_ 28 ELFYLEDYSLSEIA---------DTFNVSRQAVYD-----NIRRTGDLVEDYEKKLELYQ 73 (106)
T ss_dssp HHHHTSCCCHHHHH---------HHTTCCHHHHHH-----HHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhCCcHHHHH---------HHHCcCHHHHHH-----HHHHHHHHHHHHHHHHChHH
Confidence 34455678888874 557777654432 34556678999999998764
No 10
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=18.54 E-value=16 Score=23.57 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=8.7
Q ss_pred hhhhcceeec
Q psy2841 83 FARSVGIAVD 92 (178)
Q Consensus 83 ~A~tiGI~VD 92 (178)
.|+++||.||
T Consensus 61 Ta~SmGi~Ve 70 (70)
T d1vqoi1 61 TCTSLGVTIE 70 (70)
T ss_dssp TSTTTTEEEC
T ss_pred hhhcceEEeC
Confidence 6899999987
Done!