Your job contains 1 sequence.
>psy2841
MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH
KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF
PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2841
(178 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-031007-1 - symbol:rpl13 "ribosomal protein ... 630 1.3e-61 1
UNIPROTKB|P41125 - symbol:RPL13 "60S ribosomal protein L1... 629 1.6e-61 1
UNIPROTKB|E2R4F5 - symbol:RPL13 "Uncharacterized protein"... 605 5.7e-59 1
MGI|MGI:105922 - symbol:Rpl13 "ribosomal protein L13" spe... 604 7.3e-59 1
UNIPROTKB|P26373 - symbol:RPL13 "60S ribosomal protein L1... 603 9.3e-59 1
UNIPROTKB|F1MK30 - symbol:RPL13 "60S ribosomal protein L1... 601 1.5e-58 1
UNIPROTKB|Q56JZ1 - symbol:RPL13 "60S ribosomal protein L1... 601 1.5e-58 1
RGD|621179 - symbol:Rpl13 "ribosomal protein L13" species... 601 1.5e-58 1
FB|FBgn0011272 - symbol:RpL13 "Ribosomal protein L13" spe... 600 1.9e-58 1
UNIPROTKB|I3LSD3 - symbol:RPL13 "60S ribosomal protein L1... 595 6.6e-58 1
RGD|2320504 - symbol:LOC100361259 "60S ribosomal protein ... 587 4.6e-57 1
RGD|2322065 - symbol:LOC100360491 "60S ribosomal protein ... 582 1.6e-56 1
RGD|1563145 - symbol:RGD1563145 "similar to 60S ribosomal... 547 8.0e-53 1
TAIR|locus:2101283 - symbol:BBC1 "breast basic conserved ... 505 2.3e-48 1
TAIR|locus:2172863 - symbol:AT5G23900 species:3702 "Arabi... 482 6.2e-46 1
WB|WBGene00004425 - symbol:rpl-13 species:6239 "Caenorhab... 469 1.5e-44 1
POMBASE|SPAC664.05 - symbol:rpl13 "60S ribosomal protein ... 462 8.1e-44 1
DICTYBASE|DDB_G0291870 - symbol:rpl13 "S60 ribosomal prot... 459 1.7e-43 1
UNIPROTKB|J3QSB4 - symbol:RPL13 "60S ribosomal protein L1... 455 4.5e-43 1
UNIPROTKB|F1M2E9 - symbol:F1M2E9 "60S ribosomal protein L... 452 9.3e-43 1
UNIPROTKB|F1LV25 - symbol:F1LV25 "Uncharacterized protein... 443 8.4e-42 1
RGD|1563194 - symbol:RGD1563194 "similar to ribosomal pro... 419 2.9e-39 1
TAIR|locus:2101328 - symbol:AT3G48960 species:3702 "Arabi... 418 3.7e-39 1
UNIPROTKB|F1LUH3 - symbol:F1LUH3 "Uncharacterized protein... 415 7.8e-39 1
ASPGD|ASPL0000067118 - symbol:AN7003 species:162425 "Emer... 386 9.2e-36 1
UNIPROTKB|A4R6R9 - symbol:MGG_13645 "60S ribosomal protei... 382 2.4e-35 1
SGD|S000002240 - symbol:RPL13A "Ribosomal 60S subunit pro... 370 4.6e-34 1
SGD|S000004750 - symbol:RPL13B "Ribosomal 60S subunit pro... 369 5.8e-34 1
CGD|CAL0006157 - symbol:RPL13 species:5476 "Candida albic... 365 1.5e-33 1
UNIPROTKB|O59931 - symbol:RPL13 "60S ribosomal protein L1... 365 1.5e-33 1
GENEDB_PFALCIPARUM|PF08_0075 - symbol:PF08_0075 "60S ribo... 323 4.4e-29 1
UNIPROTKB|Q8IAX6 - symbol:PF08_0075 "60S ribosomal protei... 323 4.4e-29 1
UNIPROTKB|F1M2R8 - symbol:F1M2R8 "60S ribosomal protein L... 268 2.9e-23 1
UNIPROTKB|F1PYD2 - symbol:F1PYD2 "Uncharacterized protein... 253 1.1e-21 1
UNIPROTKB|H3BTH3 - symbol:RPL13 "60S ribosomal protein L1... 118 2.3e-07 1
>ZFIN|ZDB-GENE-031007-1 [details] [associations]
symbol:rpl13 "ribosomal protein L13" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IMP]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
ZFIN:ZDB-GENE-031007-1 GO:GO:0006412 GO:GO:0005840 GO:GO:0051726
GO:GO:0003735 eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
HOVERGEN:HBG001156 OrthoDB:EOG4SJ5FX EMBL:AF385081 EMBL:AY561516
EMBL:BC075977 IPI:IPI00500626 RefSeq:NP_937786.1 UniGene:Dr.75569
STRING:Q90Z10 PRIDE:Q90Z10 Ensembl:ENSDART00000047391 GeneID:378961
KEGG:dre:378961 InParanoid:Q90Z10 NextBio:20813904
ArrayExpress:Q90Z10 Bgee:Q90Z10 Uniprot:Q90Z10
Length = 211
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 115/178 (64%), Positives = 147/178 (82%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI N HFHKDWQK ++ WFNQPARK RRR+AR KA+ IAPRP +GPLRP+VRCPT+RYH
Sbjct: 8 MILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGFTLEE++ AG+N + AR++GI+VD+RRR++S ESLQ N+QRLKEY++KLI+F
Sbjct: 68 TKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ K +KG++T EE K+ATQL GP+MPI++ K KAR+ SE EK F AF +LRM
Sbjct: 128 PRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRM 184
>UNIPROTKB|P41125 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:D26318 IPI:IPI00586858 RefSeq:NP_990330.1
UniGene:Gga.4040 STRING:P41125 PRIDE:P41125
Ensembl:ENSGALT00000009974 GeneID:395849 KEGG:gga:395849
InParanoid:P41125 NextBio:20815916 Uniprot:P41125
Length = 211
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 118/178 (66%), Positives = 145/178 (81%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRP AGP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
K+VRAGRGF+LEE++ AG+N RFAR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 KKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++PEE K+ATQL GP+MPIR + KAR+ SE EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRM 184
>UNIPROTKB|E2R4F5 [details] [associations]
symbol:RPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:AAEX03003953 RefSeq:XP_003434731.1 RefSeq:XP_536749.1
Ensembl:ENSCAFT00000031560 GeneID:479612 KEGG:cfa:479612
NextBio:20854772 Uniprot:E2R4F5
Length = 211
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 114/178 (64%), Positives = 143/178 (80%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184
>MGI|MGI:105922 [details] [associations]
symbol:Rpl13 "ribosomal protein L13" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 MGI:MGI:105922
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:U28917 EMBL:AK002787 EMBL:AK010989
EMBL:BC055358 IPI:IPI00224505 RefSeq:NP_058018.2 UniGene:Mm.319719
UniGene:Mm.391834 ProteinModelPortal:P47963 SMR:P47963
IntAct:P47963 STRING:P47963 PhosphoSite:P47963 PaxDb:P47963
PRIDE:P47963 Ensembl:ENSMUST00000000756 GeneID:270106
KEGG:mmu:270106 UCSC:uc009nue.2 InParanoid:P47963 NextBio:446939
Bgee:P47963 CleanEx:MM_RPL13 Genevestigator:P47963
GermOnline:ENSMUSG00000000740 GermOnline:ENSMUSG00000066315
Uniprot:P47963
Length = 211
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 114/178 (64%), Positives = 143/178 (80%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184
>UNIPROTKB|P26373 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0022626 "cytosolic ribosome"
evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006413 GO:GO:0003723
GO:GO:0003735 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762
GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
CTD:6137 HOVERGEN:HBG001156 OrthoDB:EOG4SJ5FX ChiTaRS:RPL13
EMBL:X64707 EMBL:AB062392 EMBL:AK297198 EMBL:AC092123 EMBL:BC004954
EMBL:BC007345 EMBL:BC007563 EMBL:BC007805 EMBL:BC010994
EMBL:BC013078 EMBL:BC014167 EMBL:BC020804 EMBL:BC027463
EMBL:BC063378 EMBL:BC093063 EMBL:BC106058 IPI:IPI00465361
IPI:IPI00978971 PIR:S23753 RefSeq:NP_000968.2 RefSeq:NP_001230059.1
RefSeq:NP_001230060.1 RefSeq:NP_150254.1 UniGene:Hs.410817
ProteinModelPortal:P26373 SMR:P26373 IntAct:P26373
MINT:MINT-1148895 STRING:P26373 PhosphoSite:P26373 DMDM:21903462
PaxDb:P26373 PeptideAtlas:P26373 PRIDE:P26373 DNASU:6137
Ensembl:ENST00000311528 Ensembl:ENST00000393099
Ensembl:ENST00000452368 Ensembl:ENST00000567815 GeneID:6137
KEGG:hsa:6137 UCSC:uc002fnm.2 GeneCards:GC16P089637 HGNC:HGNC:10303
HPA:HPA051702 MIM:113703 neXtProt:NX_P26373 PharmGKB:PA34670
InParanoid:P26373 PhylomeDB:P26373 GenomeRNAi:6137 NextBio:23839
PMAP-CutDB:P26373 ArrayExpress:P26373 Bgee:P26373 CleanEx:HS_RPL13
Genevestigator:P26373 GermOnline:ENSG00000167526 Uniprot:P26373
Length = 211
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 112/178 (62%), Positives = 143/178 (80%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
M+ HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MP+R K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRM 184
>UNIPROTKB|F1MK30 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9913 "Bos
taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 OMA:PKYARTI IPI:IPI00705739
EMBL:DAAA02046269 Ensembl:ENSBTAT00000047320 Uniprot:F1MK30
Length = 293
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 113/178 (63%), Positives = 142/178 (79%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184
>UNIPROTKB|Q56JZ1 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722
EMBL:AY911336 IPI:IPI00705739 RefSeq:NP_001015543.1
UniGene:Bt.22248 STRING:Q56JZ1 PRIDE:Q56JZ1 GeneID:508221
KEGG:bta:508221 CTD:6137 HOVERGEN:HBG001156 InParanoid:Q56JZ1
OrthoDB:EOG4SJ5FX NextBio:20868415 Uniprot:Q56JZ1
Length = 211
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 113/178 (63%), Positives = 142/178 (79%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184
>RGD|621179 [details] [associations]
symbol:Rpl13 "ribosomal protein L13" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=NAS] [GO:0006412 "translation" evidence=NAS] [GO:0015934
"large ribosomal subunit" evidence=NAS] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO;NAS] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 RGD:621179
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:X78327 EMBL:BC058143 IPI:IPI00230916
PIR:JC2368 RefSeq:NP_112363.1 UniGene:Rn.156566 UniGene:Rn.908
IntAct:P41123 STRING:P41123 PRIDE:P41123 Ensembl:ENSRNOT00000020635
GeneID:81765 KEGG:rno:81765 UCSC:RGD:621179 InParanoid:P41123
NextBio:615562 Genevestigator:P41123 GermOnline:ENSRNOG00000015335
Uniprot:P41123
Length = 211
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 114/178 (64%), Positives = 142/178 (79%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRM 184
>FB|FBgn0011272 [details] [associations]
symbol:RpL13 "Ribosomal protein L13" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IDA;NAS] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0005840 "ribosome" evidence=IDA;NAS] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0000022 "mitotic spindle elongation"
evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
EMBL:AE014134 GO:GO:0051298 GO:GO:0005811 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0000022 eggNOG:COG4352 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:X77926 EMBL:BT053725 EMBL:BT128812 PIR:JC4260 PIR:S42877
RefSeq:NP_001033891.1 RefSeq:NP_523530.1 UniGene:Dm.21541
ProteinModelPortal:P41126 SMR:P41126 DIP:DIP-19420N IntAct:P41126
MINT:MINT-752357 STRING:P41126 PaxDb:P41126 PRIDE:P41126
EnsemblMetazoa:FBtr0079888 EnsemblMetazoa:FBtr0100164
EnsemblMetazoa:FBtr0310482 GeneID:34329 KEGG:dme:Dmel_CG4651
FlyBase:FBgn0011272 InParanoid:P41126 OrthoDB:EOG45HQDF
PhylomeDB:P41126 ChiTaRS:RPL13 GenomeRNAi:34329 NextBio:787975
Bgee:P41126 GermOnline:CG4651 Uniprot:P41126
Length = 218
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 112/178 (62%), Positives = 145/178 (81%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MIPN H+HK WQ+++K WFNQPARK RR R+KKAK + PRPA+G LRP+VRCPT+RYH
Sbjct: 7 MIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYH 66
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
++RAGRGFTLEE++GAG+ A FA+++GIAVD RR++KS+ES Q NIQRLKEY+SKLI+F
Sbjct: 67 TKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILF 126
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKS-KARIPSEAEKKFSAFQTLR 177
P EKK +R GE++ EE K+ATQLKGP++PI+ +P + R ++ EKKF AF TLR
Sbjct: 127 PINEKK-IRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLR 183
>UNIPROTKB|I3LSD3 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:FP325274 RefSeq:NP_001230274.1 UniGene:Ssc.769
Ensembl:ENSSSCT00000028682 GeneID:100628232 KEGG:ssc:100628232
Uniprot:I3LSD3
Length = 211
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 111/178 (62%), Positives = 142/178 (79%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct: 8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR + KAR+ ++ EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKREKARVITDEEKNFKAFASLRM 184
>RGD|2320504 [details] [associations]
symbol:LOC100361259 "60S ribosomal protein L13-like"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:2320504 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02873
PANTHER:PTHR11722 OrthoDB:EOG4SJ5FX IPI:IPI00476506
RefSeq:XP_002725036.1 RefSeq:XP_002728163.1 PRIDE:D4A075
Ensembl:ENSRNOT00000046777 GeneID:100361259 KEGG:rno:100361259
OMA:QFMPIVR Uniprot:D4A075
Length = 210
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 114/178 (64%), Positives = 140/178 (78%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQP-VDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 66
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY SKLI+F
Sbjct: 67 TKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYCSKLILF 126
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR +E EK F AF +LRM
Sbjct: 127 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRM 183
>RGD|2322065 [details] [associations]
symbol:LOC100360491 "60S ribosomal protein L13-like"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:2322065 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 OMA:PKYARTI
OrthoDB:EOG4SJ5FX IPI:IPI00393399 RefSeq:XP_002725039.1
RefSeq:XP_002728169.1 PRIDE:D3ZRM9 Ensembl:ENSRNOT00000041303
GeneID:100360491 KEGG:rno:100360491 UCSC:RGD:2322065 Uniprot:D3ZRM9
Length = 211
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 112/178 (62%), Positives = 140/178 (78%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI FHKDWQ+ + WFNQPARK RR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPLFHKDWQQRVDTWFNQPARKICRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG+++ EE K+ATQL GP+MPIR K KAR +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRM 184
>RGD|1563145 [details] [associations]
symbol:RGD1563145 "similar to 60S ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:1563145 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 OrthoDB:EOG4SJ5FX
IPI:IPI00390829 RefSeq:XP_001068099.1 RefSeq:XP_575281.1
PRIDE:D3ZD02 Ensembl:ENSRNOT00000051343 GeneID:499937
KEGG:rno:499937 UCSC:RGD:1563145 CTD:499937 OMA:KACRIAP
NextBio:704484 Uniprot:D3ZD02
Length = 210
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 107/178 (60%), Positives = 136/178 (76%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKDWQ+ + WFNQ A K RRR+A+ KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDWQQRVDTWFNQRASKIRRRKAQQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGF+LEE+R AG++ + A ++GI+VD RR +KS ESLQ N+QRLKE++SKLI+F
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKMAHTIGISVDPRR-NKSTESLQANVQRLKEFRSKLILF 126
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
PR+ +KG ++ EE K+ATQL GP+MPIR K KAR +E EK F A +LRM
Sbjct: 127 PRKPSAP-KKGGSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKASASLRM 183
>TAIR|locus:2101283 [details] [associations]
symbol:BBC1 "breast basic conserved 1" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA;ISS;TAS] [GO:0006412 "translation"
evidence=IEA;ISS;TAS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0005886 GO:GO:0009506 GO:GO:0005774 GO:GO:0005618
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 EMBL:AL132967
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 EMBL:X75162 EMBL:AF428384
EMBL:AY050854 EMBL:AY065137 EMBL:AY079381 EMBL:AY081595
EMBL:AY084928 EMBL:Z34257 IPI:IPI00547367 PIR:S37271
RefSeq:NP_001030831.1 RefSeq:NP_190470.1 RefSeq:NP_850672.1
UniGene:At.22360 ProteinModelPortal:P41127 SMR:P41127 STRING:P41127
PaxDb:P41127 PRIDE:P41127 ProMEX:P41127 EnsemblPlants:AT3G49010.1
EnsemblPlants:AT3G49010.2 EnsemblPlants:AT3G49010.3 GeneID:824062
KEGG:ath:AT3G49010 GeneFarm:176 TAIR:At3g49010 eggNOG:COG4352
HOGENOM:HOG000170452 InParanoid:P41127 KO:K02873 OMA:LNPHFHK
PhylomeDB:P41127 ProtClustDB:CLSN2684222 Genevestigator:P41127
GermOnline:AT3G49010 PANTHER:PTHR11722 Uniprot:P41127
Length = 206
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 95/179 (53%), Positives = 133/179 (74%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IPN HF K WQ Y+K WFNQPARK RRR AR KKA +I PRP +GPLRP+V T++Y+
Sbjct: 6 VIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VR G+GFTLEE++ AG+ + A ++GIAVD RR+++S+E LQ N+QRLK YK+KL++F
Sbjct: 66 MKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK-ARIPSEAEKKFSAFQTLRM 178
PRR +K ++ G++TPEE ATQ++G +PI + KP + ++ SE K F AF +R+
Sbjct: 126 PRRARK-VKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEM-KSFKAFDKIRL 182
>TAIR|locus:2172863 [details] [associations]
symbol:AT5G23900 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IDA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016020 GO:GO:0006412 EMBL:AB005244
GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352 HOGENOM:HOG000170452
KO:K02873 ProtClustDB:CLSN2684222 PANTHER:PTHR11722 EMBL:AF378895
EMBL:AY052746 IPI:IPI00535397 RefSeq:NP_197778.1 UniGene:At.8750
ProteinModelPortal:Q9FF90 SMR:Q9FF90 STRING:Q9FF90 PaxDb:Q9FF90
PRIDE:Q9FF90 EnsemblPlants:AT5G23900.1 GeneID:832455
KEGG:ath:AT5G23900 TAIR:At5g23900 InParanoid:Q9FF90 OMA:PIRIVRC
PhylomeDB:Q9FF90 Genevestigator:Q9FF90 GermOnline:AT5G23900
Uniprot:Q9FF90
Length = 206
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 91/179 (50%), Positives = 133/179 (74%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IP++HF K WQ Y+K WFNQPARK RRR AR KKA +I PRP +GPLRP+V T++Y+
Sbjct: 6 VIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAG+GFTLEE++ AG+ + A ++GI+VD RR+++S+E LQ N+QRLK YK+KL+VF
Sbjct: 66 MKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK-ARIPSEAEKKFSAFQTLRM 178
PRR ++ ++ G++TPEE ATQ++G MPI K + ++ ++ K F A+ +R+
Sbjct: 126 PRRSRQ-VKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADL-KAFKAYDKIRL 182
>WB|WBGene00004425 [details] [associations]
symbol:rpl-13 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006412
GO:GO:0000003 GO:GO:0005840 GO:GO:0003735 EMBL:FO080749
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 PIR:T25599
RefSeq:NP_001021017.1 RefSeq:NP_001021018.1
ProteinModelPortal:P91128 SMR:P91128 DIP:DIP-25306N
MINT:MINT-1074454 STRING:P91128 PaxDb:P91128 PRIDE:P91128
EnsemblMetazoa:C32E8.2a.1 EnsemblMetazoa:C32E8.2a.2 GeneID:171949
KEGG:cel:CELE_C32E8.2 UCSC:C32E8.2a.1 CTD:171949 WormBase:C32E8.2a
WormBase:C32E8.2b InParanoid:P91128 NextBio:873371 Uniprot:P91128
Length = 207
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 91/177 (51%), Positives = 125/177 (70%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
M+ NAHF K W K IK WF+QPARK RRRQ R KA EIAPRP AG LR +VRCP RY+
Sbjct: 8 MLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYN 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+ R GRGF+L+E++ AG++ AR++GIAVD RR +K+ E L+ N RLKEYK+KLI+F
Sbjct: 68 TKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILF 127
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
P++ +KG+++ EE KVA QL+G ++P+ + + R ++AE+K F+ LR
Sbjct: 128 PKKASAP-KKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183
>POMBASE|SPAC664.05 [details] [associations]
symbol:rpl13 "60S ribosomal protein L13 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 PomBase:SPAC664.05
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0022625 HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
OrthoDB:EOG415KPR EMBL:AB016216 PIR:T43385 RefSeq:NP_593453.1
IntAct:O74175 STRING:O74175 EnsemblFungi:SPAC664.05.1
GeneID:2543553 KEGG:spo:SPAC664.05 OMA:QPARKER NextBio:20804562
Uniprot:O74175
Length = 208
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 93/175 (53%), Positives = 123/175 (70%)
Query: 2 IPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHK 61
+PNAHFHKDWQ+Y+K WFNQP RK RRRQAR KA +IAPRP +RP V+ PT+RY+
Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNM 67
Query: 62 RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121
+VRAGRGFTLEE++ AG++ R A ++GI VD RRR++S ESLQ N++R+K Y + LIVFP
Sbjct: 68 KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127
Query: 122 RREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTL 176
R+ + +KG+AT T + ++PI Q + I EA K F+AF TL
Sbjct: 128 RKAGQP-KKGDATDVSGAEQTDVAA-VLPITQEAVEEAKPITEEA-KNFNAFSTL 179
>DICTYBASE|DDB_G0291870 [details] [associations]
symbol:rpl13 "S60 ribosomal protein L13"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
dictyBase:DDB_G0291870 GenomeReviews:CM000155_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000186 eggNOG:COG4352
KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722 RefSeq:XP_629876.1
STRING:Q54E20 PRIDE:Q54E20 EnsemblProtists:DDB0229951
GeneID:8628374 KEGG:ddi:DDB_G0291870 ProtClustDB:PTZ00352
Uniprot:Q54E20
Length = 209
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 94/180 (52%), Positives = 127/180 (70%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
++ N HF K WQ ++ WFNQPARK RRR RI+KA ++ PRP A L+P+VR T+RY+
Sbjct: 7 VLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAGRGFTLEE++ AGL A++AR++GIAVD RR +K+ +SL LN QRLK Y+SKL++F
Sbjct: 66 MKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKP---KSKARIPSEAEKKFSAFQTLR 177
PR+ +KGEAT EE A Q P ++ + + R P+EAEKKFSA+ TL+
Sbjct: 126 PRKVNAP-KKGEATKEEVAKAVQTLKPFT-VKSAIAVTCEQTPRKPTEAEKKFSAYATLK 183
>UNIPROTKB|J3QSB4 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 PANTHER:PTHR11722 ChiTaRS:RPL13 EMBL:AC092123
HGNC:HGNC:10303 Ensembl:ENST00000467736 Uniprot:J3QSB4
Length = 126
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 82/119 (68%), Positives = 102/119 (85%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
M+ HFHKDWQ+ + WFNQPARK RRR+AR KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8 MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIV 119
+VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+
Sbjct: 68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLIL 126
>UNIPROTKB|F1M2E9 [details] [associations]
symbol:F1M2E9 "60S ribosomal protein L13" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 IPI:IPI00950963
Ensembl:ENSRNOT00000064713 Uniprot:F1M2E9
Length = 165
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 90/155 (58%), Positives = 118/155 (76%)
Query: 18 WFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGA 77
WFNQPAR+ R+ K + IAPRPA+GP+RPIVR PTVRYH +VRAGRGF+LEE+R A
Sbjct: 6 WFNQPAREI----LRLAKVRRIAPRPASGPIRPIVRYPTVRYHTKVRAGRGFSLEELRVA 61
Query: 78 GLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEE 137
G++ + AR++GI+VD RRR+KS ESLQ N+QRL EY+SKLI+FPR+ +KG+++ EE
Sbjct: 62 GIHKKMARTIGISVDPRRRNKSTESLQANMQRLNEYRSKLILFPRKPSAP-KKGDSSAEE 120
Query: 138 RKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSA 172
K+ATQL GP+MPIR K KAR +E + +A
Sbjct: 121 LKLATQLTGPVMPIRNVYKKEKARAITERMARANA 155
>UNIPROTKB|F1LV25 [details] [associations]
symbol:F1LV25 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 IPI:IPI00947892 Ensembl:ENSRNOT00000018474
Uniprot:F1LV25
Length = 203
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 94/179 (52%), Positives = 124/179 (69%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
M+ HFHK+W QPA K R +AR KA IAP PA+GP+ PIVRCPTVRYH
Sbjct: 8 MVLKPHFHKNWAA--SGHLIQPACKIFRHKARPAKA-HIAPCPASGPIIPIVRCPTVRYH 64
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLK-EYKSKLIV 119
+VRA RGF+ EE+R AG + + A ++GI++D RRR+K+ ESLQ N+QRLK Y+SKL++
Sbjct: 65 TKVRADRGFS-EELRVAGTHQKMAHTIGISIDPRRRNKATESLQANVQRLKGSYRSKLLL 123
Query: 120 FPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
FPR+ +KG+++ EE K+ATQL GP+MPIR K KAR +E EK +F +LRM
Sbjct: 124 FPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARASTEEEKNLKSFASLRM 181
>RGD|1563194 [details] [associations]
symbol:RGD1563194 "similar to ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 Pfam:PF01294 RGD:1563194 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722 OrthoDB:EOG4SJ5FX
IPI:IPI00360566 Ensembl:ENSRNOT00000032427 Uniprot:D3ZFF0
Length = 223
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 90/179 (50%), Positives = 115/179 (64%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MI HFHKD Q+ + WF +P + R + K IAPRP GP+RPIVRCPTVRYH
Sbjct: 8 MILKPHFHKDRQQRVDTWFYRPGCEIHRCKTGQAKVHRIAPRPMPGPIRPIVRCPTVRYH 67
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKE-YKSKLIV 119
+V GRGF+LEE+R AG+N AR++ I VD RR++ S +SLQ +Q LKE Y+SKLI
Sbjct: 68 TKV-PGRGFSLEELRVAGVNKNMARTICICVDPRRQNTSTKSLQAKVQHLKEGYRSKLIR 126
Query: 120 FPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
FPR+ +KG+ + EE K+A QL GP+MPIR K K R + F AF +LRM
Sbjct: 127 FPRKPSAP-KKGDRSAEEFKLAIQLTGPVMPIRNVYKKVKGR-SHHRRRTFKAFASLRM 183
>TAIR|locus:2101328 [details] [associations]
symbol:AT3G48960 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294
PROSITE:PS01104 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL132967 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
ProtClustDB:CLSN2684222 PANTHER:PTHR11722 IPI:IPI00517323
PIR:T46134 RefSeq:NP_190465.1 UniGene:At.53843
ProteinModelPortal:Q9SMT4 SMR:Q9SMT4 STRING:Q9SMT4
EnsemblPlants:AT3G48960.1 GeneID:824057 KEGG:ath:AT3G48960
GeneFarm:186 TAIR:At3g48960 InParanoid:Q9SMT4 PhylomeDB:Q9SMT4
Genevestigator:Q9SMT4 GermOnline:AT3G48960 Uniprot:Q9SMT4
Length = 206
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 81/179 (45%), Positives = 123/179 (68%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
+IPN HF K W+ Y+K FNQPA K RRR AR KA +I PRP AGP+RP+V T+ Y+
Sbjct: 6 VIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+VRAG+GFTLEE++ AG+ + A ++GI+VD R+++S+E Q N+QRLK YK+KL++F
Sbjct: 66 MKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIF 125
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK-ARIPSEAEKKFSAFQTLRM 178
PR + ++ G++ +E ATQ++ MPI + P + ++ S+ K F+A+ +R+
Sbjct: 126 PRCART-VKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDM-KLFNAYDKIRL 182
>UNIPROTKB|F1LUH3 [details] [associations]
symbol:F1LUH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 IPI:IPI00389956 Ensembl:ENSRNOT00000039574
OMA:CANARLF Uniprot:F1LUH3
Length = 199
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 93/178 (52%), Positives = 119/178 (66%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
MIP HFHKD WFNQPA K R +AR KA+ AP + P+RPIV CPTVRYH
Sbjct: 8 MIPKPHFHKD------TWFNQPAHKIHRSKARQVKARHTAP---SCPIRPIVWCPTVRYH 58
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
+ R RGF EE+R AG++ + AR++GI+VD RRR+KS+ESLQ N+Q LKEY KLI++
Sbjct: 59 TK-RNDRGFRPEELRLAGIHKKMARTIGISVDPRRRNKSIESLQANVQGLKEYCPKLILY 117
Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
P++ +KGE+ EE K+A QL GP+MP R K KAR+ +E EK F F +L M
Sbjct: 118 PKKPSAP-QKGESCAEEFKLANQLTGPVMPFRMYK--EKARLITE-EKNFKDFVSLHM 171
>ASPGD|ASPL0000067118 [details] [associations]
symbol:AN7003 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:BN001304
EMBL:AACD01000117 eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 OrthoDB:EOG415KPR RefSeq:XP_664607.1
STRING:Q5AXH7 EnsemblFungi:CADANIAT00000473 GeneID:2869986
KEGG:ani:AN7003.2 Uniprot:Q5AXH7
Length = 226
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 75/140 (53%), Positives = 101/140 (72%)
Query: 2 IPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHK 61
I HFHKDWQ+ ++ F Q RK RR+AR+ KA +APRP LRPIVRCPTV+Y++
Sbjct: 9 IQKHHFHKDWQRRVRVHFEQAGRKHSRREARLAKAAAVAPRPV-DKLRPIVRCPTVKYNR 67
Query: 62 RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121
RVRAGRGFTL E++ AG+ + AR++GIAVD RR + S ESL N+ RLK+YK++LI+FP
Sbjct: 68 RVRAGRGFTLAELKEAGIPKKLARTIGIAVDHRRTNYSKESLVANVARLKDYKARLIIFP 127
Query: 122 RREKKKLRKGEATPEERKVA 141
R+ + +K ++T EE A
Sbjct: 128 RKSGQ-FKKTDSTAEEVNAA 146
>UNIPROTKB|A4R6R9 [details] [associations]
symbol:MGG_13645 "60S ribosomal protein L13" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0043581 EMBL:CM001234 KO:K02873
PANTHER:PTHR11722 OrthoDB:EOG415KPR RefSeq:XP_003717580.1
EnsemblFungi:MGG_13645T0 GeneID:2680716 KEGG:mgr:MGG_13645
Uniprot:A4R6R9
Length = 202
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 81/176 (46%), Positives = 121/176 (68%)
Query: 2 IPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHK 61
IP+ HF KDWQ+ ++C F+QP +K RR AR KA ++APRP LRP+V+CPT++Y++
Sbjct: 9 IPHNHFRKDWQRRVRCHFDQPGKKASRRIARRAKAAKVAPRPV-DLLRPVVQCPTIKYNR 67
Query: 62 RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121
R R GRGFTL+E++ AGL+ AR++GI+VD RRR+ S ESL N++RLK YK+KL+V P
Sbjct: 68 RARLGRGFTLDELKAAGLHKLQARTIGISVDGRRRNLSEESLARNVERLKAYKAKLVVMP 127
Query: 122 RREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
++ KK + T K++ + P++P SK+ IP +++K SA++ LR
Sbjct: 128 KKGKKP-EVADKTAH--KISAVV--PIVPPVGVTEISKSDIP-KSDK--SAYRQLR 175
>SGD|S000002240 [details] [associations]
symbol:RPL13A "Ribosomal 60S subunit protein L13A"
species:4932 "Saccharomyces cerevisiae" [GO:0006412 "translation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;TAS] [GO:0002181 "cytoplasmic translation"
evidence=TAS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
SGD:S000002240 EMBL:BK006938 GO:GO:0003735 GO:GO:0002181 PDB:4B6A
PDBsum:4B6A GO:GO:0022625 PDB:3U5E PDB:3U5I PDBsum:3U5E PDBsum:3U5I
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
EMBL:Z74130 PIR:S67618 RefSeq:NP_010201.1 ProteinModelPortal:Q12690
SMR:Q12690 IntAct:Q12690 MINT:MINT-2981666 STRING:Q12690
PaxDb:Q12690 PeptideAtlas:Q12690 EnsemblFungi:YDL082W GeneID:851477
KEGG:sce:YDL082W CYGD:YDL082w GeneTree:ENSGT00390000007818
OMA:PKYARTI OrthoDB:EOG415KPR NextBio:968783 Genevestigator:Q12690
GermOnline:YDL082W Uniprot:Q12690
Length = 199
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 82/173 (47%), Positives = 113/173 (65%)
Query: 6 HFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRA 65
HF K WQ+ +K F+Q +K RR AR +A +IAPRP LRP+VR PTV+Y+++VRA
Sbjct: 13 HFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRA 71
Query: 66 GRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREK 125
GRGFTL E++ AGL A +AR++GIAVD RR++++ E N+QRLKEY+SK+IVFPR
Sbjct: 72 GRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRN-- 129
Query: 126 KKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
G+A PE +V + PI Q +AR + + SAF+TLR+
Sbjct: 130 -----GKA-PEAEQVLSA--AATFPIAQPATDVEARAVQDNGE--SAFRTLRL 172
>SGD|S000004750 [details] [associations]
symbol:RPL13B "Ribosomal 60S subunit protein L13B"
species:4932 "Saccharomyces cerevisiae" [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=TAS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
SGD:S000004750 EMBL:BK006946 GO:GO:0003735 GO:GO:0002181
EMBL:Z47071 GO:GO:0022625 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818
OrthoDB:EOG415KPR PIR:S50398 RefSeq:NP_013862.1
ProteinModelPortal:P40212 SMR:P40212 DIP:DIP-2591N IntAct:P40212
MINT:MINT-425636 STRING:P40212 PeptideAtlas:P40212
EnsemblFungi:YMR142C GeneID:855173 KEGG:sce:YMR142C CYGD:YMR142c
NextBio:978614 Genevestigator:P40212 GermOnline:YMR142C
Uniprot:P40212
Length = 199
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 82/173 (47%), Positives = 113/173 (65%)
Query: 6 HFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRA 65
HF K WQ+ +K F+Q +K RR AR +A +IAPRP LRP+VR PTV+Y+++VRA
Sbjct: 13 HFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRA 71
Query: 66 GRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREK 125
GRGFTL E++ AGL A +AR++GIAVD RR++++ E N+QRLKEY+SK+IVFPR
Sbjct: 72 GRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPR--- 128
Query: 126 KKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
G+A PE +V + PI Q +AR + + SAF+TLR+
Sbjct: 129 ----DGKA-PEAEQVLSA--AATFPIAQPATDVEARAVQDNGE--SAFRTLRL 172
>CGD|CAL0006157 [details] [associations]
symbol:RPL13 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=IDA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
CGD:CAL0006157 EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL033497
eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722 EMBL:AF050672
EMBL:U80854 PIR:T52146 RefSeq:XP_721220.1 RefSeq:XP_721492.1
STRING:O59931 GeneID:3636841 GeneID:3637128 KEGG:cal:CaO19.10511
KEGG:cal:CaO19.2994 Uniprot:O59931
Length = 202
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 76/175 (43%), Positives = 116/175 (66%)
Query: 4 NAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRV 63
N HF K WQ+ ++ F+Q +K RRQ+R++KA +IAPRP LRP+VR PTV+Y+++V
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 64 RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRR 123
RAGRGFTL E++ G+ ++AR++GI+VD RR++KS E+ N+ RL+EYKSKL++F
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIF--- 126
Query: 124 EKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
+KK A+ E+ V+ P+ Q P+S R E+ +A++TLR+
Sbjct: 127 DKKTKASEVASFEQVDVSATF-----PVEQPAPESGLRAVEVPEQ--TAYRTLRL 174
>UNIPROTKB|O59931 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:237561
"Candida albicans SC5314" [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
CGD:CAL0006157 EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL033497
eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722 EMBL:AF050672
EMBL:U80854 PIR:T52146 RefSeq:XP_721220.1 RefSeq:XP_721492.1
STRING:O59931 GeneID:3636841 GeneID:3637128 KEGG:cal:CaO19.10511
KEGG:cal:CaO19.2994 Uniprot:O59931
Length = 202
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 76/175 (43%), Positives = 116/175 (66%)
Query: 4 NAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRV 63
N HF K WQ+ ++ F+Q +K RRQ+R++KA +IAPRP LRP+VR PTV+Y+++V
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 64 RAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRR 123
RAGRGFTL E++ G+ ++AR++GI+VD RR++KS E+ N+ RL+EYKSKL++F
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIF--- 126
Query: 124 EKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
+KK A+ E+ V+ P+ Q P+S R E+ +A++TLR+
Sbjct: 127 DKKTKASEVASFEQVDVSATF-----PVEQPAPESGLRAVEVPEQ--TAYRTLRL 174
>GENEDB_PFALCIPARUM|PF08_0075 [details] [associations]
symbol:PF08_0075 "60S ribosomal protein L13,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 EMBL:AL844507
HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
ProtClustDB:PTZ00352 RefSeq:XP_001349385.1
ProteinModelPortal:Q8IAX6 IntAct:Q8IAX6 MINT:MINT-1660232
PRIDE:Q8IAX6 EnsemblProtists:PF08_0075:mRNA GeneID:2655274
KEGG:pfa:PF08_0075 EuPathDB:PlasmoDB:PF3D7_0814000 OMA:SIAANIQ
Uniprot:Q8IAX6
Length = 215
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 72/186 (38%), Positives = 114/186 (61%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
++PN H HK WQ++++ F++ +K +RR R K+ K P L PIV CPT RY+
Sbjct: 7 VLPNVHLHKWWQRHVRVNFSKNIKKKKRRLLREKRRKANGGTPIE-KLHPIVHCPTQRYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
R R G+GFT EE++GAGL R A+++GI D RR+++S ESL N++RL +YK+ L++
Sbjct: 66 FRTRLGKGFTFEELKGAGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVMI 125
Query: 121 PRREKKKLRKG----EATPEERKVAT-QLKGPLMPI----RQSKPKSKARIPSEAEKKFS 171
P + K K +KG A ++ + + K PL+ I + +KP + S+ +K+F
Sbjct: 126 PLK-KNKAKKGIGGIPADADKNTIKEFRNKKPLLSIFKKEKNTKPFYETIEVSKIDKEFL 184
Query: 172 AFQTLR 177
A++TLR
Sbjct: 185 AYKTLR 190
>UNIPROTKB|Q8IAX6 [details] [associations]
symbol:PF08_0075 "60S ribosomal protein L13" species:36329
"Plasmodium falciparum 3D7" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0003735
GO:GO:0022625 EMBL:AL844507 HOGENOM:HOG000170452 KO:K02873
PANTHER:PTHR11722 ProtClustDB:PTZ00352 RefSeq:XP_001349385.1
ProteinModelPortal:Q8IAX6 IntAct:Q8IAX6 MINT:MINT-1660232
PRIDE:Q8IAX6 EnsemblProtists:PF08_0075:mRNA GeneID:2655274
KEGG:pfa:PF08_0075 EuPathDB:PlasmoDB:PF3D7_0814000 OMA:SIAANIQ
Uniprot:Q8IAX6
Length = 215
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 72/186 (38%), Positives = 114/186 (61%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
++PN H HK WQ++++ F++ +K +RR R K+ K P L PIV CPT RY+
Sbjct: 7 VLPNVHLHKWWQRHVRVNFSKNIKKKKRRLLREKRRKANGGTPIE-KLHPIVHCPTQRYN 65
Query: 61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
R R G+GFT EE++GAGL R A+++GI D RR+++S ESL N++RL +YK+ L++
Sbjct: 66 FRTRLGKGFTFEELKGAGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVMI 125
Query: 121 PRREKKKLRKG----EATPEERKVAT-QLKGPLMPI----RQSKPKSKARIPSEAEKKFS 171
P + K K +KG A ++ + + K PL+ I + +KP + S+ +K+F
Sbjct: 126 PLK-KNKAKKGIGGIPADADKNTIKEFRNKKPLLSIFKKEKNTKPFYETIEVSKIDKEFL 184
Query: 172 AFQTLR 177
A++TLR
Sbjct: 185 AYKTLR 190
>UNIPROTKB|F1M2R8 [details] [associations]
symbol:F1M2R8 "60S ribosomal protein L13" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0051082
"unfolded protein binding" evidence=IEA] InterPro:IPR001380
InterPro:IPR001404 InterPro:IPR018256 Pfam:PF00183 Pfam:PF01294
PROSITE:PS01104 GO:GO:0005524 GO:GO:0006457 GO:GO:0006950
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 EMBL:AC110387 EMBL:AC114461
IPI:IPI00359824 Ensembl:ENSRNOT00000055035 Uniprot:F1M2R8
Length = 173
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 50/110 (45%), Positives = 78/110 (70%)
Query: 36 AKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARR 95
A IAP+PA+ P+RPIVRCPTVRYH +VR GRGF+LEEIR AG++ + AR++ I+VD ++
Sbjct: 1 ACRIAPQPASSPIRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPKK 60
Query: 96 RSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLK 145
+ K E + +R+ E K I++P+REK++ +KG ++ ++ +K
Sbjct: 61 KKKKKERKKEKNERVTETNQKDIIYPKREKEREKKGMKEGKKERIKEIVK 110
>UNIPROTKB|F1PYD2 [details] [associations]
symbol:F1PYD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 EMBL:AAEX03009117
Ensembl:ENSCAFT00000003742 OMA:CLAANIN Uniprot:F1PYD2
Length = 178
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 66/165 (40%), Positives = 96/165 (58%)
Query: 15 IKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEI 74
+ WFNQP R + R KA +A P + P+ IVR P VRYH V G F+LEE+
Sbjct: 1 VATWFNQPPCTCRCKD-RQAKASHMALHPLSRPIL-IVRRPMVRYHTDVPPGMDFSLEEL 58
Query: 75 RGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEAT 134
+ AG+ + A +GI+VD RR++KS ESL+ +++ LK+Y + I+ P + KG+ +
Sbjct: 59 QVAGIYKKVAWIIGISVDPRRQNKSTESLEADLEGLKKYLYRFIL-PLKPLAP-EKGDIS 116
Query: 135 PEERKVATQLKGPLMPIRQSKPKSKARI-PSEAEKKFSAFQTLRM 178
EE K+ATQL +MPI+ K + RI P E+ F F +L M
Sbjct: 117 AEELKLATQLAEQVMPIQNVYKKERVRIIPGES---FQGFASLCM 158
>UNIPROTKB|H3BTH3 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001380 Pfam:PF01294
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722
ChiTaRS:RPL13 EMBL:AC092123 HGNC:HGNC:10303
ProteinModelPortal:H3BTH3 SMR:H3BTH3 Ensembl:ENST00000562879
Bgee:H3BTH3 Uniprot:H3BTH3
Length = 63
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 1 MIPNAHFHKDWQKYIKCWFNQPARKFRRR 29
M+ HFHKDWQ+ + WFNQPARK RRR
Sbjct: 8 MVLKPHFHKDWQRRVATWFNQPARKIRRR 36
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 178 178 0.00086 109 3 11 22 0.37 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 586 (62 KB)
Total size of DFA: 144 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.70u 0.08s 20.78t Elapsed: 00:00:05
Total cpu time: 20.71u 0.08s 20.79t Elapsed: 00:00:05
Start: Thu Aug 15 13:18:02 2013 End: Thu Aug 15 13:18:07 2013