RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2841
         (178 letters)



>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 26.6 bits (58), Expect = 1.8
 Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 7/56 (12%)

Query: 5   AHFHKDWQKYIKCWFNQPARKFRR-------RQARIKKAKEIAPRPAAGPLRPIVR 53
               + W+K ++  +++    F          QA     KE+            V 
Sbjct: 201 IQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEVQDEEKNKKFGLSVG 256


>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated
           protein VPS36 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 94

 Score = 24.7 bits (54), Expect = 3.0
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 81  ARFARSVGIAV------DARRRSKSMESLQLNIQRLKEYKSKLIV 119
           A + +S+ I        + R   +  E L LN  +L +   +++ 
Sbjct: 47  AMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRILC 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 664,827
Number of extensions: 30292
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 6
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)