BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2842
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 184 IPGTQTKIVDPDEEGNGEICLKEY-EANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242
+PGT I D I EY E +VR +A+A + GL H + + N+ ++F
Sbjct: 36 VPGT---IAFTDAHIEVNITYAEYFEMSVR-LAEAMKRYGLNTNHRIVVCSENSLQFFMP 91
Query: 243 DLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV 302
LGA++ G A + L+ + S + V K L+KIL V+ + P ++ I+
Sbjct: 92 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS-KKGLQKILNVQKKLPIIQKII 150
Query: 303 QYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY-TSGTEGASKPVML 361
+ K D G S + D V E+ ++ L+ +SG+ G K V L
Sbjct: 151 IMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL 210
Query: 362 SHDNITFNAACI 373
H AC+
Sbjct: 211 PH-----RTACV 217
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 134 SGAAPISTEL-----KRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
SG AP+S E+ KR+ L I + +G++E A ++ D K VG+ +P +
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLP---GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 370
Query: 189 TKIVDPDE------EGNGEICLK 205
K+VD D GE+C++
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVR 393
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 184 IPGTQTKIVDPDEEGNGEICLKEY-EANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242
+PGT I D I EY E +VR +A+A + GL H + + N+ ++F
Sbjct: 36 VPGT---IAFTDAHIEVNITYAEYFEMSVR-LAEAMKRYGLNTNHRIVVCSENSLQFFMP 91
Query: 243 DLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV 302
LGA++ G A + L+ + S + V K L+KIL V+ + P ++ I+
Sbjct: 92 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS-KKGLQKILNVQKKLPIIQKII 150
Query: 303 QYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY-TSGTEGASKPVML 361
+ K D G S + D V E+ ++ L+ +SG+ G K V L
Sbjct: 151 IMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL 210
Query: 362 SHDNITFNAACI 373
H AC+
Sbjct: 211 PH-----RTACV 217
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 134 SGAAPISTEL-----KRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
SG AP+S E+ KR+ L I + +G++E A ++ D K VG+ +P +
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLP---GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 370
Query: 189 TKIVDPDE------EGNGEICLK 205
K+VD D GE+C++
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVR 393
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 107/270 (39%), Gaps = 38/270 (14%)
Query: 199 NGEI-CLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
NG++ + E R VA K+G+++ + + ++PE+ + LGA + G
Sbjct: 46 NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN 105
Query: 258 TTNSPEACLHCLVTSDANI-----CVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG 312
++P S A + C E K + VK C + PD G
Sbjct: 106 PFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMC--------VDSAPD--G 155
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 372
+ + EL + A + +V I+ ++ L Y+SGT G K VML+H + + A
Sbjct: 156 CLHFSELTQ----ADENEAPQV--DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ 209
Query: 373 IIQ------YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-------NA 419
+ YF E L V LP+ HI A + + V A + K
Sbjct: 210 QVDGDNPNLYFHSEDVILCV---LPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL 266
Query: 420 LKVYKATQAAIDRANLKSISNAQKIQKFEF 449
++ YK + A + + SI+ + + K +
Sbjct: 267 IEKYKVSIAPVVPPVMMSIAKSPDLDKHDL 296
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 25/115 (21%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSLDIP---ICEVFGMSECAGAHTV-----SAPDDFKL 177
L R+ SG AP+ EL+ + P + + +GM+E + P D K
Sbjct: 296 LSSLRMIKSGGAPLGKELEDT-VRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP 354
Query: 178 DGVGRTIPGTQTKIVDPDEEGN------GEIC----------LKEYEANVRTVAK 216
G + + KIVDP+ + GEIC L + EA RT+ K
Sbjct: 355 GACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 184 IPGTQTKIVDPDEEGNGEICLKEY-EANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242
+PGT I D I EY E +VR +A+A + GL H + + N+ ++F
Sbjct: 41 VPGT---IAFTDAHIEVNITYAEYFEMSVR-LAEAMKRYGLNTNHRIVVCSENSLQFFMP 96
Query: 243 DLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV 302
LGA++ G A + L+ + S + V K L+KIL V+ + P ++ I+
Sbjct: 97 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS-KKGLQKILNVQKKLPIIQKII 155
Query: 303 QYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY-TSGTEGASKPVML 361
+ K D G S + D V E+ ++ L+ +SG+ G K V L
Sbjct: 156 IMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL 215
Query: 362 SHDNITFNAACI 373
H AC+
Sbjct: 216 PH-----RTACV 222
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 134 SGAAPISTEL-----KRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
SG AP+S E+ KR+ L I + +G++E A ++ D K VG+ +P +
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLP---GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 375
Query: 189 TKIVDPDE------EGNGEICLK 205
K+VD D GE+C++
Sbjct: 376 AKVVDLDTGKTLGVNQRGELCVR 398
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 9/215 (4%)
Query: 184 IPGTQTKIVDPDEEGNGEICLKEY-EANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242
+PGT I D I EY E +VR +A+A + GL H + + N+ ++F
Sbjct: 41 VPGT---IAFTDAHIEVNITYAEYFEMSVR-LAEAMKRYGLNTNHRIVVSSENSLQFFMP 96
Query: 243 DLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV 302
LGA++ G A + L+ + S + V K L+KIL V+ + P ++ I+
Sbjct: 97 VLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVS-KKGLQKILNVQKKLPIIQKII 155
Query: 303 QYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY-TSGTEGASKPVML 361
+ K D G S + D V E+ ++ L+ +SG+ G K V L
Sbjct: 156 IMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL 215
Query: 362 SHD--NITFNAACIIQYFKLESAALSVISFLPLSH 394
H + F+ A + + +++S +P H
Sbjct: 216 PHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHH 250
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 134 SGAAPISTEL-----KRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
SG AP+S E+ KR+ L I + +G++E A ++ D K VG+ +P +
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLP---GIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFE 375
Query: 189 TKIVDPD 195
K+VD D
Sbjct: 376 AKVVDLD 382
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 212 RTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVT 271
R +A F KLG+ + V ++ N PE+ S L A + G A +P
Sbjct: 99 RQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKA 158
Query: 272 SDANICVVEDDKQLEKILKVKAQ-CPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 330
S+ + + E + ++KI ++ + I E P G + + EL + A E
Sbjct: 159 SNTKLIITEA-RYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEA-SEV 216
Query: 331 LDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ------YFKLESAAL 384
+D V I+ ++ L Y+SGT G K VML+H + + A + YF + L
Sbjct: 217 IDSV--EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL 274
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
V LP+ HI A + + V A + K
Sbjct: 275 CV---LPMFHIYALNSIMLCGLRVGAAILIMPK 304
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSLDIP---ICEVFGMSECAGAHTVS-----APDDFKL 177
L RV SGAAP+ EL+ ++ P + + +GM+E +S P K
Sbjct: 343 LSSIRVVKSGAAPLGKELEDA-VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS 401
Query: 178 DGVGRTIPGTQTKIVDPDEEGN------GEICLKEYE 208
G + + KIVDPD + GEIC++ ++
Sbjct: 402 GACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 438
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 9/186 (4%)
Query: 184 IPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
+PGT I D I EY +A+ + GL H + + N+ ++F
Sbjct: 70 VPGT---IAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPV 126
Query: 244 LGAIYAGGFAAGMYTTNS--PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAI 301
GA++ G G+ TN E L+ ++ V + L+KIL V+ + P ++ I
Sbjct: 127 CGALFIG---VGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKI 183
Query: 302 VQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY-TSGTEGASKPVM 360
V + + D G S +E A D + ++ L+ +SG+ G K V
Sbjct: 184 VILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVE 243
Query: 361 LSHDNI 366
L+H NI
Sbjct: 244 LTHKNI 249
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
EY + KA GL + + N E+F + ++ G A +
Sbjct: 57 EYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 325
+H L S I V K L+K++ V+ +K IV + K D G D ++ R
Sbjct: 117 VHSLGISKPTI-VFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK--RN 173
Query: 326 AP---DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT--FNAACIIQYFKLE 380
P S + +E + ++ +SG+ G K V L+H+NI F+ A Y
Sbjct: 174 TPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV 233
Query: 381 SAALSVISFLPLSH 394
S +V++ +P H
Sbjct: 234 SPGTAVLTVVPFHH 247
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 134 SGAAPISTELKRYFLS-LDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKI 191
SG AP+S E+ ++P + + +G++E A ++ D K G+ +P + K+
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKV 375
Query: 192 VDPDEEGN------GEICLK 205
+D D + + GE+C+K
Sbjct: 376 IDLDTKKSLGPNRRGEVCVK 395
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
EY + KA GL + + N E+F + ++ G A +
Sbjct: 57 EYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 325
+H L S I V K L+K++ V+ +K IV + K D G D ++ R
Sbjct: 117 VHSLGISKPTI-VFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK--RN 173
Query: 326 AP---DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT--FNAACIIQYFKLE 380
P S + +E + ++ +SG+ G K V L+H+NI F+ A Y
Sbjct: 174 TPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV 233
Query: 381 SAALSVISFLPLSH 394
S +V++ +P H
Sbjct: 234 SPGTAVLTVVPFHH 247
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 134 SGAAPISTELKRYFLS-LDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKI 191
SG AP+S E+ ++P + + +G++E A ++ D K G+ +P + K+
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKV 375
Query: 192 VDPDEEGN------GEICLK 205
+D D + + GE+C+K
Sbjct: 376 IDLDTKKSLGPNRRGEVCVK 395
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
EY + KA GL + + N E+F + ++ G A +
Sbjct: 57 EYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 325
+H L S I V K L+K++ V+ +K IV + K D G D ++ R
Sbjct: 117 VHSLGISKPTI-VFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK--RN 173
Query: 326 AP---DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT--FNAACIIQYFKLE 380
P S + +E + ++ +SG+ G K V L+H+NI F+ A Y
Sbjct: 174 TPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV 233
Query: 381 SAALSVISFLPLSH 394
S +V++ +P H
Sbjct: 234 SPGTAVLTVVPFHH 247
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 134 SGAAPISTELKRYFLS-LDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKI 191
SG AP+S E+ ++P + + +G++E A ++ D K G+ +P + K+
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKV 375
Query: 192 VDPDEEGN------GEICLK 205
+D D + + GE+C+K
Sbjct: 376 IDLDTKKSLGPNRRGEVCVK 395
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 112 VRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSA 171
+ WL+ + + L + L G A +S + L ++PI FGM+E +
Sbjct: 262 LNWLMQQGLHEPYNLQKI---LLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTAT 318
Query: 172 PDDF--KLDGVGRTIPGTQTKIVDPDEEGNGEICLK 205
P+ + D VG KI +P++EG+GE+ +K
Sbjct: 319 PEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIK 354
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
+I E A VA + GL+ V + E L + AGG + T
Sbjct: 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAY 87
Query: 261 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELM 320
+ + + ++ I V + K+ + A K+ A V+ G PD G ++
Sbjct: 88 TLHELDYFITDAEPKIVVCDPSKRD----GIAAIAAKVGATVETLG-PDGRGSLTDAAAG 142
Query: 321 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 380
A ++DR ++ ++YTSGT G SK LSHDN+ N+ ++ Y++
Sbjct: 143 ASEAFA---TIDR-----GADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFT 194
Query: 381 SAALSVISFLPLSH 394
+ +I LP+ H
Sbjct: 195 PDDV-LIHALPIYH 207
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
++ ++YTSGT G S MLSHDN+ N+ ++ Y++ + +I LP+ H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYH 207
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 128 RCRVSLSGAAPISTELKR-YFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIP 185
R+ +SG+AP+ + R + + E +GM+E +T + D ++ G VG +P
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTET-NMNTSNPYDGDRVPGAVGPALP 327
Query: 186 GTQTKIVDPD---EEGNGEICLKE 206
G ++ DP+ E G+I + E
Sbjct: 328 GVSARVTDPETGXELPRGDIGMIE 351
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
++ ++YTSGT G S MLSHDN+ N+ ++ Y++ + +I LP+ H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYH 207
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 128 RCRVSLSGAAPISTELKR-YFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIP 185
R+ +SG+AP+ + R + + E +GM+E +T + D ++ G VG +P
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTET-NMNTSNPYDGDRVPGAVGPALP 327
Query: 186 GTQTKIVDPD---EEGNGEICLKE 206
G ++ DP+ E G+I + E
Sbjct: 328 GVSARVTDPETGXELPRGDIGMIE 351
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
++ ++YTSGT G S MLSHDN+ N+ ++ Y++ + +I LP+ H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYH 207
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 128 RCRVSLSGAAPISTELKR-YFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIP 185
R+ +SG+AP+ + R + + E +GM+E +T + D ++ G VG +P
Sbjct: 269 HMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTET-NMNTSNPYDGDRVPGAVGPALP 327
Query: 186 GTQTKIVDPD---EEGNGEICLKE 206
G ++ DP+ E G+I + E
Sbjct: 328 GVSARVTDPETGXELPRGDIGMIE 351
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 397
+ +E ++YTSG+ G K V ++++ + ++ F L++ + ++ P S
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQV-FLNQAPFS-FDL 198
Query: 398 QTVDIYSVMTVAATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQKFEFLPADFS 455
+DIY + TLW DK+ + K A++++++++ ++ + + A FS
Sbjct: 199 SVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS 256
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 397
+ +E ++YTSG+ G K V ++++ + ++ F L++ + ++ P S
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQV-FLNQAPFS-FDL 198
Query: 398 QTVDIYSVMTVAATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQKFEFLPADFS 455
+DIY + TLW DK+ + K A++++++++ ++ + + A FS
Sbjct: 199 SVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS 256
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 222 GLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVE 280
GL+R V ++ PEW+ LG I AG F G S + L+ L S A +V
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD-ILYRLQMSKAK-AIVA 152
Query: 281 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 340
D+ ++++ V ++CP L+ + K S D + + + S +
Sbjct: 153 GDEVIQEVDTVASECPSLRIKLLVSEK-------SCDGWLNFKKLLNEASTTHHCVETGS 205
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 382
E + +TSGT G K S+ ++ A + L+++
Sbjct: 206 QEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQAS 247
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 222 GLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVE 280
GL+R V ++ PEW+ LG I AG F G S + L+ L S A +V
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD-ILYRLQMSKAK-AIVA 152
Query: 281 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 340
D+ ++++ V ++CP L+ + K S D + + + S +
Sbjct: 153 GDEVIQEVDTVASECPSLRIKLLVSEK-------SCDGWLNFKKLLNEASTTHHCVETGS 205
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 382
E + +TSGT G K S+ ++ A + L+++
Sbjct: 206 QEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQAS 247
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 19/206 (9%)
Query: 186 GTQTKIV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ D + I +E +V A L LG+++ V I PE +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKVKAQCP 296
L G + ++ SPEA C++ S + + + D+ L+K + + P
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 209
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELG------RAAPDESLDRVLETIATNECCTLVYTS 350
+ ++ I W E +L +A+P+ E + + ++YTS
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLFILYTS 265
Query: 351 GTEGASKPVMLSHDNITFNAACIIQY 376
G+ G K V+ + AA +Y
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 212 RTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTN---SPEACLH 267
R + LG+ V +GFN + L A +A G A ++T N SP+ +
Sbjct: 58 RRLMGGLRALGVGVGDRVATLGFN----HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAY 113
Query: 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 327
L ++ + + D L + ++ + ++ V + K + G ++++E +
Sbjct: 114 ILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPE-GYLAYEEAL------- 164
Query: 328 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN--AACIIQYFKLESAALS 385
E D V + C + YT+GT G K V+ SH + + AA ++ L +
Sbjct: 165 GEEADPV--RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV- 221
Query: 386 VISFLPLSHIAA 397
V+ +P+ H+ A
Sbjct: 222 VLPVVPMFHVNA 233
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 295 CPKLKAIVQYEGKPDKPGVIS-W---DELMELGRAAPDESLDRVLETIATNECCTLVYTS 350
P I + D PG ++ W D L E R+A + D ++ ++YTS
Sbjct: 123 APSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSA---AADEPAVECGGDDNLFIMYTS 179
Query: 351 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA 410
GT G K V+ +H+++ A+ + ++ LP+ H+AA T I+S M
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLP-LPMFHVAALTTVIFSAMRGVT 238
Query: 411 TLWFADKNALKVY 423
+ +A KV+
Sbjct: 239 LISMPQFDATKVW 251
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 295 CPKLKAIVQYEGKPDKPGVIS-W---DELMELGRAAPDESLDRVLETIATNECCTLVYTS 350
P I + D PG ++ W D L E R+A + D ++ ++YTS
Sbjct: 109 APSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSA---AADEPAVECGGDDNLFIMYTS 165
Query: 351 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA 410
GT G K V+ +H+++ A+ + ++ LP+ H+AA T I+S M
Sbjct: 166 GTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLP-LPMFHVAALTTVIFSAMRGVT 224
Query: 411 TLWFADKNALKVYK 424
+ +A KV+
Sbjct: 225 LISMPQFDATKVWS 238
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA- 396
I N+ ++YTSGT G K + +H NI + Y +FL +S+ A
Sbjct: 604 IDPNDPAYIMYTSGTTGKPKGNITTHANIQ-GLVKHVDYMAFSDQD----TFLSVSNYAF 658
Query: 397 -AQTVDIYSVMTVAATLWFADKNAL 420
A T D Y+ M AA L AD++ L
Sbjct: 659 DAFTFDFYASMLNAARLIIADEHTL 683
>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-nitro-inden-1-one
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
Length = 283
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 40 SVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKST-SLQHYMAY 98
++PG LG +A +VAL G +++ +L G K I NYA ST S + +A
Sbjct: 15 AIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAA 73
Query: 99 LEKNVSE 105
++KN S+
Sbjct: 74 IKKNGSD 80
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 40 SVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKST-SLQHYMAY 98
++PG LG +A +VAL G +++ +L G K I NYA ST S + +A
Sbjct: 15 AIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAA 73
Query: 99 LEKNVSE 105
++KN S+
Sbjct: 74 IKKNGSD 80
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 29/211 (13%)
Query: 186 GTQTKIV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ D + I +E +V A L LG+++ V I PE +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQ 303
L G + ++ SPEA ++ S + + + D+ ++ A P K +
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG-----VRAGASIPLKKNVDD 204
Query: 304 YEGKPDKPGV------------ISWDELMELG------RAAPDESLDRVLETIATNECCT 345
P+ V I W E +L +A+P+ E + +
Sbjct: 205 ALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLF 260
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
++YTSG+ G K V+ + AA +Y
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 337 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
+I +N+ L YTSG+ K V +SH N+ N I F + + S+LP H
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETI-IFSWLPPHH 219
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 19/206 (9%)
Query: 186 GTQTKIV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ D + I +E +V A L LG+++ V I PE +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKVKAQCP 296
L G + ++ SPEA ++ S + + + D+ L+K + + P
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 209
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELG------RAAPDESLDRVLETIATNECCTLVYTS 350
+ ++ I W E +L +A+P+ E + + ++YTS
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLFILYTS 265
Query: 351 GTEGASKPVMLSHDNITFNAACIIQY 376
G+ G K V+ + AA +Y
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 19/206 (9%)
Query: 186 GTQTKIV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ D + I +E +V A L LG+++ V I PE +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKVKAQCP 296
L G + ++ SPEA ++ S + + + D+ L+K + + P
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 209
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELG------RAAPDESLDRVLETIATNECCTLVYTS 350
+ ++ I W E +L +A+P+ E + + ++YTS
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLFILYTS 265
Query: 351 GTEGASKPVMLSHDNITFNAACIIQY 376
G+ G K V+ + AA +Y
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 19/206 (9%)
Query: 186 GTQTKIV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ D + I +E +V A L LG+++ V I PE +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKVKAQCP 296
L G + ++ SPEA ++ S + + + D+ L+K + + P
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 209
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELG------RAAPDESLDRVLETIATNECCTLVYTS 350
+ ++ I W E +L +A+P+ E + + ++YTS
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLFILYTS 265
Query: 351 GTEGASKPVMLSHDNITFNAACIIQY 376
G+ G K V+ + AA +Y
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 19/206 (9%)
Query: 186 GTQTKIV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ D + I +E +V A L LG+++ V I PE +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKVKAQCP 296
L G + ++ SPEA ++ S + + + D+ L+K + + P
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 209
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELG------RAAPDESLDRVLETIATNECCTLVYTS 350
+ ++ I W E +L +A+P+ E + + ++YTS
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLFILYTS 265
Query: 351 GTEGASKPVMLSHDNITFNAACIIQY 376
G+ G K V+ + AA +Y
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 19/206 (9%)
Query: 186 GTQTKIV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ D + I +E +V A L LG+++ V I PE +
Sbjct: 90 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKVKAQCP 296
L G + ++ SPEA ++ S + + + D+ L+K + + P
Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 209
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELG------RAAPDESLDRVLETIATNECCTLVYTS 350
+ ++ I W E +L +A+P+ E + + ++YTS
Sbjct: 210 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLFILYTS 265
Query: 351 GTEGASKPVMLSHDNITFNAACIIQY 376
G+ G K V+ + AA +Y
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|3JVD|A Chain A, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
pdb|3JVD|B Chain B, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
Length = 333
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 214 VAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGA 246
V +AF +L + H V I G++ PEW YS +GA
Sbjct: 246 VMRAFTRLNVRVPHDVVIGGYDDPEW-YSFVGA 277
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 286 EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCT 345
E+IL + + K I+ E P IS L E+ A E ++ ++
Sbjct: 91 ERILAI-IEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNYY 149
Query: 346 LVYTSGTEGASKPVMLSHDNI 366
+++TSGT G K V +SHDN+
Sbjct: 150 IIFTSGTTGQPKGVQISHDNL 170
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 25/193 (12%)
Query: 208 EANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA------GMYTTNS 261
+A AK L L L++ V +I + E+ + YAG A G+ +S
Sbjct: 55 KARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDS 114
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELME 321
A L L+ S ++ D+ L + P+L + +W
Sbjct: 115 WSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSH-----------AW----- 158
Query: 322 LGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
+A P+ D L+ N+ L YTSG+ + V+++H + N I
Sbjct: 159 -FKALPEA--DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLR 215
Query: 382 AALSVISFLPLSH 394
+S+LP H
Sbjct: 216 PGDRCVSWLPFYH 228
>pdb|1A87|A Chain A, Colicin N
Length = 321
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418
+V+SFLP+S +A + + +MT++ F D N
Sbjct: 274 AVLSFLPISGLAVTALGVIGIMTISYLSSFIDAN 307
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 281 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE--LMELGRAAPDESLDRVLETI 338
+D+++ ++L++ CPK Q+ P+K +I W + + E P L R LE I
Sbjct: 151 EDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEII 210
Query: 339 ATNECC 344
++
Sbjct: 211 LEDDLV 216
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 281 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE--LMELGRAAPDESLDRVLETI 338
+D+++ ++L++ CPK Q+ P+K +I W + + E P L R LE I
Sbjct: 157 EDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEII 216
Query: 339 ATNECC 344
++
Sbjct: 217 LEDDLV 222
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 119 KVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLD 178
++ +A+ R VS S A P+ + +R + + E +GM+E +V A + +
Sbjct: 266 ELAKALAGARLLVSGSAALPVH-DHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAG 324
Query: 179 GVGRTIPGTQTKIVDP--------DEEGNGEICLK------EYEANVRTVAKAFLKLGLE 224
VG +PG + ++V+ D E GEI ++ EY A AF + G
Sbjct: 325 TVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFF 384
Query: 225 RYHSVCI 231
R + +
Sbjct: 385 RTGDMAV 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,549,624
Number of Sequences: 62578
Number of extensions: 599515
Number of successful extensions: 1699
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 59
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)