Query psy2842
Match_columns 486
No_of_seqs 511 out of 4455
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 18:18:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 99.9 1.4E-26 4.7E-31 242.3 23.7 263 199-464 48-321 (550)
2 2d1s_A Luciferase, luciferin 4 99.9 5.8E-26 2E-30 237.3 24.4 261 199-464 50-323 (548)
3 1v25_A Long-chain-fatty-acid-C 99.9 5.5E-26 1.9E-30 237.2 20.4 253 199-464 45-307 (541)
4 1mdb_A 2,3-dihydroxybenzoate-A 99.9 5.6E-26 1.9E-30 237.0 20.0 253 199-464 48-312 (539)
5 3o83_A Peptide arylation enzym 99.9 1.5E-25 5E-30 234.1 22.9 282 189-485 47-340 (544)
6 3r44_A Fatty acyl COA syntheta 99.9 7.5E-25 2.6E-29 227.3 23.6 251 199-464 41-298 (517)
7 3ni2_A 4-coumarate:COA ligase; 99.9 1.5E-25 5.1E-30 233.7 17.9 262 189-464 39-311 (536)
8 3g7s_A Long-chain-fatty-acid-- 99.9 9E-25 3.1E-29 228.4 23.4 251 199-463 50-309 (549)
9 2v7b_A Benzoate-coenzyme A lig 99.9 5E-25 1.7E-29 229.4 21.3 265 188-464 39-314 (529)
10 1pg4_A Acetyl-COA synthetase; 99.9 1.5E-24 5.2E-29 230.9 25.1 259 199-464 105-392 (652)
11 1ry2_A Acetyl-coenzyme A synth 99.9 1.2E-24 4.2E-29 231.9 24.0 258 199-463 111-397 (663)
12 3c5e_A Acyl-coenzyme A synthet 99.9 1E-24 3.6E-29 228.7 22.4 255 199-464 71-336 (570)
13 3ivr_A Putative long-chain-fat 99.9 7.7E-25 2.6E-29 226.9 21.1 218 199-428 29-246 (509)
14 4fuq_A Malonyl COA synthetase; 99.9 2.3E-25 7.9E-30 230.3 16.3 251 200-464 27-282 (503)
15 3etc_A AMP-binding protein; ad 99.9 1.8E-24 6.1E-29 227.3 22.5 261 199-464 84-355 (580)
16 3rg2_A Enterobactin synthase c 99.9 6E-24 2.1E-28 225.2 24.3 215 188-417 41-260 (617)
17 3t5a_A Long-chain-fatty-acid-- 99.9 1.9E-24 6.4E-29 222.3 17.0 197 200-417 57-264 (480)
18 3fce_A D-alanine--poly(phospho 99.9 6.6E-24 2.2E-28 220.0 19.4 242 199-464 24-275 (512)
19 3kxw_A Saframycin MX1 syntheta 99.9 2.2E-24 7.5E-29 227.6 15.9 248 199-464 38-303 (590)
20 3tsy_A Fusion protein 4-coumar 99.9 3.8E-24 1.3E-28 238.3 18.4 267 189-464 78-358 (979)
21 1t5h_X 4-chlorobenzoyl COA lig 99.9 4E-24 1.4E-28 221.2 16.5 247 199-464 27-286 (504)
22 1amu_A GRSA, gramicidin synthe 99.9 1.9E-23 6.6E-28 218.7 20.6 195 199-417 62-256 (563)
23 3gqw_A Fatty acid AMP ligase; 99.9 3.7E-23 1.3E-27 217.6 21.9 199 198-417 46-252 (576)
24 3e7w_A D-alanine--poly(phospho 99.9 2E-23 6.8E-28 216.3 19.0 239 199-463 24-273 (511)
25 3ipl_A 2-succinylbenzoate--COA 99.9 1.4E-22 4.6E-27 209.6 23.2 228 188-427 17-248 (501)
26 4dg8_A PA1221; ANL superfamily 99.9 7.4E-23 2.5E-27 216.3 17.9 193 189-416 44-236 (620)
27 4gr5_A Non-ribosomal peptide s 99.9 5E-23 1.7E-27 216.1 15.9 201 199-428 98-301 (570)
28 3l8c_A D-alanine--poly(phospho 99.9 4.8E-22 1.6E-26 206.5 20.7 193 199-417 27-221 (521)
29 3nyq_A Malonyl-COA ligase; A/B 99.9 9.3E-23 3.2E-27 210.9 15.1 192 188-417 39-230 (505)
30 2vsq_A Surfactin synthetase su 99.9 1.1E-21 3.7E-26 224.2 15.9 201 188-417 480-680 (1304)
31 3ite_A SIDN siderophore synthe 99.8 4.1E-20 1.4E-24 193.7 21.2 197 199-417 53-257 (562)
32 2d1s_A Luciferase, luciferin 4 99.8 1.4E-21 4.9E-26 204.0 5.2 155 123-282 305-477 (548)
33 1mdb_A 2,3-dihydroxybenzoate-A 99.8 1.6E-21 5.5E-26 203.3 3.4 153 124-281 295-465 (539)
34 3rix_A Luciferase, luciferin 4 99.8 2.7E-21 9.4E-26 202.0 5.0 161 122-287 302-480 (550)
35 3etc_A AMP-binding protein; ad 99.8 2.1E-21 7.3E-26 203.9 1.7 153 124-282 338-511 (580)
36 3ni2_A 4-coumarate:COA ligase; 99.8 2.5E-20 8.6E-25 194.1 3.1 155 123-282 293-470 (536)
37 4fuq_A Malonyl COA synthetase; 99.8 4.5E-20 1.5E-24 190.7 3.3 153 125-282 266-435 (503)
38 3c5e_A Acyl-coenzyme A synthet 99.8 4.3E-20 1.5E-24 193.6 0.8 153 124-282 319-492 (570)
39 1v25_A Long-chain-fatty-acid-C 99.8 2.5E-20 8.5E-25 194.4 -2.1 154 124-282 290-471 (541)
40 1pg4_A Acetyl-COA synthetase; 99.8 1.6E-19 5.6E-24 192.1 4.0 157 123-282 374-553 (652)
41 3o83_A Peptide arylation enzym 99.8 4.3E-20 1.5E-24 192.7 -1.4 156 127-287 307-480 (544)
42 3e7w_A D-alanine--poly(phospho 99.7 6.3E-19 2.1E-23 182.5 6.5 154 125-281 258-433 (511)
43 3tsy_A Fusion protein 4-coumar 99.7 3.8E-19 1.3E-23 198.1 3.8 163 122-289 339-524 (979)
44 4gr5_A Non-ribosomal peptide s 99.7 1.8E-19 6.2E-24 189.0 1.0 158 127-286 326-509 (570)
45 3nyq_A Malonyl-COA ligase; A/B 99.7 1.2E-19 4.1E-24 187.5 -1.5 151 127-282 272-442 (505)
46 3r44_A Fatty acyl COA syntheta 99.7 1.9E-19 6.5E-24 186.6 -0.3 154 123-282 280-449 (517)
47 1ry2_A Acetyl-coenzyme A synth 99.7 6.5E-19 2.2E-23 187.7 2.6 155 123-282 380-562 (663)
48 1t5h_X 4-chlorobenzoyl COA lig 99.7 6E-19 2E-23 182.3 1.7 150 124-282 269-438 (504)
49 3g7s_A Long-chain-fatty-acid-- 99.7 2.2E-19 7.7E-24 187.5 -3.1 194 21-282 254-475 (549)
50 2v7b_A Benzoate-coenzyme A lig 99.7 1.2E-18 4.1E-23 181.2 0.7 147 127-279 300-462 (529)
51 3gqw_A Fatty acid AMP ligase; 99.7 1.6E-17 5.4E-22 174.6 9.2 152 122-280 294-495 (576)
52 4gs5_A Acyl-COA synthetase (AM 99.7 3.9E-17 1.3E-21 160.9 10.0 131 126-277 147-284 (358)
53 3fce_A D-alanine--poly(phospho 99.7 2.3E-18 7.8E-23 178.3 -0.6 156 124-282 258-435 (512)
54 3l8c_A D-alanine--poly(phospho 99.7 1.5E-18 5E-23 180.2 -2.3 154 124-279 261-436 (521)
55 4dg8_A PA1221; ANL superfamily 99.7 3.7E-18 1.3E-22 180.3 -0.2 154 126-281 275-454 (620)
56 3ipl_A 2-succinylbenzoate--COA 99.7 1.2E-18 4E-23 180.0 -5.2 148 128-282 275-434 (501)
57 1amu_A GRSA, gramicidin synthe 99.7 2.9E-18 9.9E-23 179.5 -2.3 154 126-282 292-466 (563)
58 3ivr_A Putative long-chain-fat 99.6 1.4E-17 4.8E-22 172.3 0.6 152 126-287 271-441 (509)
59 3rg2_A Enterobactin synthase c 99.6 1.6E-17 5.5E-22 175.8 -1.5 153 125-282 300-470 (617)
60 3ite_A SIDN siderophore synthe 99.6 7.5E-17 2.6E-21 168.9 1.7 154 125-282 292-464 (562)
61 3kxw_A Saframycin MX1 syntheta 99.6 4.6E-17 1.6E-21 171.5 -1.0 156 122-282 284-497 (590)
62 3t5a_A Long-chain-fatty-acid-- 99.6 6.4E-16 2.2E-20 158.5 2.6 122 122-245 306-479 (480)
63 2vsq_A Surfactin synthetase su 99.5 6.5E-16 2.2E-20 176.6 0.6 153 127-281 720-896 (1304)
64 3qov_A Phenylacetate-coenzyme 99.5 1.2E-15 4.1E-20 154.6 -2.2 182 21-282 164-367 (436)
65 2y27_A Phenylacetate-coenzyme 99.5 3E-15 1E-19 151.7 -1.7 183 21-282 168-369 (437)
66 2y4o_A Phenylacetate-coenzyme 99.4 4.2E-15 1.4E-19 150.9 -2.6 141 127-281 212-370 (443)
67 4gs5_A Acyl-COA synthetase (AM 99.4 1.1E-13 3.6E-18 136.3 7.5 76 340-417 36-111 (358)
68 3qov_A Phenylacetate-coenzyme 99.2 7.5E-12 2.6E-16 126.5 7.9 142 341-485 86-239 (436)
69 3hgu_A EHPF; phenazine, antibi 99.2 7.5E-12 2.5E-16 123.7 2.4 80 338-419 88-171 (369)
70 2y27_A Phenylacetate-coenzyme 99.1 7.2E-11 2.5E-15 119.4 8.3 89 338-428 87-180 (437)
71 2y4o_A Phenylacetate-coenzyme 99.1 6.9E-11 2.4E-15 119.7 7.8 89 338-428 89-182 (443)
72 3hgu_A EHPF; phenazine, antibi 99.0 2.9E-11 9.9E-16 119.4 -2.8 92 127-235 231-338 (369)
73 4b2g_A GH3-1 auxin conjugating 45.5 7.9 0.00027 39.7 1.9 30 339-368 97-127 (609)
74 4eql_A 4-substituted benzoates 36.7 13 0.00045 37.9 1.9 30 339-368 91-121 (581)
75 4epl_A Jasmonic acid-amido syn 36.5 13 0.00044 37.9 1.8 30 339-368 96-126 (581)
76 2l69_A Rossmann 2X3 fold prote 35.8 87 0.003 22.8 5.5 72 235-306 10-85 (134)
77 3lax_A Phenylacetate-coenzyme 22.5 8.6 0.00029 29.3 -1.9 35 246-282 6-40 (109)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.95 E-value=1.4e-26 Score=242.28 Aligned_cols=263 Identities=17% Similarity=0.198 Sum_probs=197.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 48 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 48 EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHh-hhccCCCCceEEEEcCCCCCCCCc
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR-VLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
++++ ..+.+.......+.+..++..+.....++..++.++.............. ......++++++|+|||||||.||
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 206 (550)
T 3rix_A 128 VSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK 206 (550)
T ss_dssp ECGG-GHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCC
T ss_pred EcHH-HHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcc
Confidence 9876 55666667777888888887766554456677777766543221110000 011123578999999999999999
Q ss_pred eeEechHHHHHHHHHHHHH---ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH----
Q psy2842 358 PVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA---- 429 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~---- 429 (486)
||+++|+++.......... .++ .+++++++.+|++|.+|+ ..++.++..|+++++.+. ++..+.+.+.+.
T Consensus 207 gV~~th~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~ 284 (550)
T 3rix_A 207 GVALPHRTACVRFSHARDPIFGNQI-IPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284 (550)
T ss_dssp EEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSE
T ss_pred hhhhhHHHHHHHHHHhhhhhccccC-CCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 9999999998876655443 344 678999999999999997 457788999999999765 444555555441
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+...+......+......+.+|+..+.
T Consensus 285 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 321 (550)
T 3rix_A 285 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSK 321 (550)
T ss_dssp EEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCH
T ss_pred EEeCcHHHHHHHhCccccccCcccccEEEEecCCCCH
Confidence 12333555666666666666666777777876553
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.94 E-value=5.8e-26 Score=237.29 Aligned_cols=261 Identities=17% Similarity=0.219 Sum_probs=193.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 50 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 50 GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhcc--C-CCCceEEEEcCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET--I-ATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~a~i~~TSGTTG~ 355 (486)
++++ ..+.+..+....+....++..++....++..+|+++.......... ...... . ..+++++|+|||||||.
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~ 206 (548)
T 2d1s_A 130 SSKK-GLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ--ASSFKTVEVDRKEQVALIMNSSGSTGL 206 (548)
T ss_dssp ECTT-THHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCC--GGGCCCCCCCTTTCEEEEECCSSCSSS
T ss_pred EcHH-HHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCC--cccccccccCCCCCEEEEEeCCCCCCC
Confidence 9876 3444445545555455566554332112344577776554221000 000000 0 23899999999999999
Q ss_pred CceeEechHHHHHHHHHHHHH---ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH--
Q psy2842 356 SKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA-- 429 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~-- 429 (486)
||||+++|+++.......... +++ .+++++++.+|++|.+|+...++.++ .|+++++.+. ++..+.+.+.+.
T Consensus 207 PKgv~~sh~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~ 284 (548)
T 2d1s_A 207 PKGVQLTHENIVTRFSHARDPIYGNQV-SPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKC 284 (548)
T ss_dssp CCCEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTE
T ss_pred CCEEEecHHHHHHHHHHhhchhhccCC-CccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCC
Confidence 999999999999877766554 455 67899999999999999877778888 9999998764 555555555441
Q ss_pred ----HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 ----IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 ----i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+...+......+......+.+|+..+.
T Consensus 285 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 323 (548)
T 2d1s_A 285 TSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323 (548)
T ss_dssp EEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCH
T ss_pred cEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCH
Confidence 12333455555555555556666666677765554
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.94 E-value=5.5e-26 Score=237.16 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=188.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 124 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLL 124 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+.+..+....+.++.+++.++... .+..+++++....... ....++++++|+|||||||.|||
T Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~a~i~~TSGTTG~PKg 193 (541)
T 1v25_A 125 FDPN-LLPLVEAIRGELKTVQHFVVMDEKAP-EGYLAYEEALGEEADP---------VRVPERAACGMAYTTGTTGLPKG 193 (541)
T ss_dssp ECGG-GHHHHHHHGGGCSSCCEEEESSSCCC-TTCEEHHHHCCSCCCC---------CCCCTTSEEEEEEECSSSSSCEE
T ss_pred EChh-HHHHHHHHHhhCCCccEEEEecCCCC-cccccHHHHhhccCCc---------ccCCCCCcEEEEECCCCCCCCcE
Confidence 9875 44555556666676766766554321 1334555543322110 13456899999999999999999
Q ss_pred eEechHHHHHHHHHH--HHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC--ChHHHHHHHHHH-----
Q psy2842 359 VMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK--NALKVYKATQAA----- 429 (486)
Q Consensus 359 V~~sh~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~--~~~~~~~~i~~~----- 429 (486)
|+++|+++....... ...+++ .++|++++.+|++|.+++ ..++.++..|+++++.+. ++..+.+.+.+.
T Consensus 194 V~~sh~~l~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~ 271 (541)
T 1v25_A 194 VVYSHRALVLHSLAASLVDGTAL-SEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT 271 (541)
T ss_dssp EEEEHHHHHHHHHHTTSTTTTCC-CTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEE
T ss_pred eeeehHHHHHHHhhhhhcccccC-CCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEE
Confidence 999999998665542 233445 678999999999999987 456788999999999764 555555555441
Q ss_pred -HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 -IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 -i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+..........+.+....+.+|+..+.
T Consensus 272 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 307 (541)
T 1v25_A 272 AGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPR 307 (541)
T ss_dssp EECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCH
T ss_pred ecchHHHHHHHhhhhccCCcchhccEEEECCCCCCH
Confidence 11222344444333333344555556667765554
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.94 E-value=5.6e-26 Score=236.96 Aligned_cols=253 Identities=14% Similarity=0.170 Sum_probs=190.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|..+.+++.++++.+++++++
T Consensus 48 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (539)
T 1mdb_A 48 NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127 (539)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh----HHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 279 VEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 279 ~~~~~----~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
+++.. ....+..+....+.++.+++.++.. . +.++....... . ......++++++|+|||||||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~-~-----~~~~~~~~d~a~i~~TSGTTG 195 (539)
T 1mdb_A 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---E---FLPLEDLHTEP-V-----KLPEVKSSDVAFLQLSGGSTG 195 (539)
T ss_dssp EESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---T---SEEGGGCCCCC-C-----CCCCCCTTSEEEEEECCCSSS
T ss_pred eccccccccHHHHHHHHHhcCCCccEEEEcCCcc---c---hhhhhhccccc-c-----ccCCCCcCceEEEEeCCCcCC
Confidence 98752 1223334445566666665544321 1 11111111100 0 012345789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC-ChHHHHHHHHHH---
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK-NALKVYKATQAA--- 429 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~--- 429 (486)
.||||+++|+++.+.+......+++ ..++++++.+|++|.+++.. .++.++..|+++++.+. ++..+.+.+.+.
T Consensus 196 ~PKgV~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t 274 (539)
T 1mdb_A 196 LSKLIPRTHDDYIYSLKRSVEVCWL-DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVT 274 (539)
T ss_dssp SCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCS
T ss_pred CCcEEEEehHHHHHHHHHHHHhhCC-CCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 9999999999999988888888887 78899999999999999876 78999999999999765 444555555441
Q ss_pred ---HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 ---IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 ---i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+..........+.+....+.+|+..+.
T Consensus 275 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 312 (539)
T 1mdb_A 275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSA 312 (539)
T ss_dssp EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCH
T ss_pred EEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCH
Confidence 12233344444443344455556666677776554
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.94 E-value=1.5e-25 Score=234.07 Aligned_cols=282 Identities=11% Similarity=0.113 Sum_probs=202.2
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.+++. ..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++
T Consensus 47 ~Al~~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~ 122 (544)
T 3o83_A 47 LAIICG----ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122 (544)
T ss_dssp EEEEET----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHH
T ss_pred eEEEcC----CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHH
Confidence 455553 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhH----HHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 269 LVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~----~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
++.++++++++++... .+....+....+....++..+... ....+.++......... ......+++++
T Consensus 123 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~d~a 194 (544)
T 3o83_A 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA---TDFGLLDWIETPAETFV-----DFSSTPADEVA 194 (544)
T ss_dssp HHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT---TSEEHHHHHHSCCSSCC-----CCCCCCTTSEE
T ss_pred HHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc---cccchhhhhhccccccc-----ccccCCccceE
Confidence 9999999999987532 123334444555555566554332 22334444443221111 01234578999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC-ChHHH
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK-NALKV 422 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~-~~~~~ 422 (486)
+|+|||||||.||||+++|+++...+......+++ .++|++++.+|++|.+++.. .++.++..|+++++.+. ++...
T Consensus 195 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~ 273 (544)
T 3o83_A 195 FFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL-NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNC 273 (544)
T ss_dssp EEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHH
T ss_pred EEEECCCcccCCceEEechHHHHHHHHHHHHHhCC-CCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHH
Confidence 99999999999999999999999999988888888 78999999999999999875 68899999999999765 44455
Q ss_pred HHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 423 YKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 423 ~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
++.+.+. ..+..+..+..........+.+....+.+|+..+. .+.+. +.+.+...+.+.|+
T Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~-~~~~~-~~~~~~~~~~~~YG 340 (544)
T 3o83_A 274 FSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPE-SLARQ-VPEVLNCKLQQVFG 340 (544)
T ss_dssp HHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCH-HHHTH-HHHHHCSEEEEEEE
T ss_pred HHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCH-HHHHH-HHHHhCCcEEeeec
Confidence 5554431 11233344444444444455555666667766554 22222 44444333444443
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.93 E-value=7.5e-25 Score=227.29 Aligned_cols=251 Identities=20% Similarity=0.216 Sum_probs=185.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 41 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 120 (517)
T 3r44_A 41 DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI 120 (517)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++. ....+..+....+....++... ...++.+.........+ .....++++++|+|||||||.|||
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PKg 187 (517)
T 3r44_A 121 YGAP-SAPVIDAIRAQADPPGTVTDWI------GADSLAERLRSAAADEP------AVECGGDDNLFIMYTSGTTGHPKG 187 (517)
T ss_dssp ECGG-GHHHHHHHHHSSSCCTTCCEEE------EHHHHHHHHHHCCCCCC------CCCCCTTSEEEEEEECC---CCEE
T ss_pred ECCc-hHHHHHHHHhccCCccEEEEcc------CcccHHHHhhccCcCCC------CCCCCCCCeEEEEECCcccccCce
Confidence 9876 3444444444433322222111 11233343333221111 123457899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH------Hh
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA------ID 431 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~------i~ 431 (486)
|+++|+++...+......+++ ..+|++++.+|++|.+++...++..+ .|+++++.+. ++....+.+.+. ..
T Consensus 188 V~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~ 265 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTIDV-RYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAV 265 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHSCC-CTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECSSCCHHHHHHHHHHTTCCEEEEC
T ss_pred eeeeHHHHHHHHHHHHHhcCC-CCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeH
Confidence 999999999999888888888 78899999999999999866566666 8999888765 555555555441 12
Q ss_pred hhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 432 RANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 432 ~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+..+..+...+......+....+.+.+|+..+.
T Consensus 266 P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 298 (517)
T 3r44_A 266 PAILNFMRQVPEFAELDAPDFRYFITGGAPMPE 298 (517)
T ss_dssp HHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCH
T ss_pred HHHHHHHHhCcccccCCCCcccEEEECCCCCCH
Confidence 333445555555555566666677777876653
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.93 E-value=1.5e-25 Score=233.67 Aligned_cols=262 Identities=18% Similarity=0.251 Sum_probs=193.8
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
..+++.++ ...+||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++
T Consensus 39 ~a~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~ 116 (536)
T 3ni2_A 39 PCLINGAN--GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116 (536)
T ss_dssp EEEEETTT--CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHH
T ss_pred eEEEECCC--CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHH
Confidence 44554322 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEc
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY 348 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 348 (486)
++.++++++++++. ..+.+....... ..+ ++..+.. ..+...++++........ ......++++++|+|
T Consensus 117 l~~~~~~~~i~~~~-~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~d~a~i~~ 185 (536)
T 3ni2_A 117 AKASRAKLLITQAC-YYEKVKDFARES-DVK-VMCVDSA--PDGCLHFSELTQADENEA------PQVDISPDDVVALPY 185 (536)
T ss_dssp HHHHTEEEEEECGG-GTHHHHHHHHHH-TCE-EEESSCC--CTTCEETHHHHTSCGGGC------CCCCCCTTSEEECCE
T ss_pred HHhcCCEEEEEChH-HHHHHHHHHhhc-Cce-EEEecCC--CCCccCHHHHhhcccccc------ccCCCCccCEEEEEc
Confidence 99999999999876 333333332222 222 3433322 234455666554322111 112346789999999
Q ss_pred CCCCCCCCceeEechHHHHHHHHHHHHH----ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHH
Q psy2842 349 TSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVY 423 (486)
Q Consensus 349 TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~ 423 (486)
||||||.||||+++|+++...+...... +.+ ..++++++.+|++|.+++...++.++..|+++++.+. ++..+.
T Consensus 186 TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 264 (536)
T 3ni2_A 186 SSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLL 264 (536)
T ss_dssp ECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCC-CTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHH
T ss_pred CCCccccchHHHhhHHHHHHHHHHHHhhccccccC-CCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHH
Confidence 9999999999999999998876655432 234 6789999999999999998888999999999999865 444455
Q ss_pred HHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 424 KATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 424 ~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+.+.+. ..+..+..+...+......+.+..+.+.+|+..+.
T Consensus 265 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 265 GLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGK 311 (536)
T ss_dssp HHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCH
T ss_pred HHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCH
Confidence 544442 12333455666666666666666777777775543
No 8
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.93 E-value=9e-25 Score=228.43 Aligned_cols=251 Identities=17% Similarity=0.155 Sum_probs=188.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|..+.+++.++++.+++++++
T Consensus 50 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i 129 (549)
T 3g7s_A 50 PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLV 129 (549)
T ss_dssp CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++. ..+.+.......+ ++.+++.++ ...++.++...+...... ......+++++|+|||||||.|||
T Consensus 130 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~~d~a~i~~TSGTTG~PKg 197 (549)
T 3g7s_A 130 VHSM-LYENFKPVLEKTG-VERVFVVGG-----EVNSLSEVMDSGSEDFEN-----VKVNPEEDVALIPYTGGTTGMPKG 197 (549)
T ss_dssp EEGG-GHHHHHHHHTTSC-CCEEEEETC-----SSSCHHHHHHHSCSCCCC-----CCCCTTTSEEECCEECCCCC-CEE
T ss_pred EChH-HHHHHHHHHhhCC-CcEEEEeCC-----CCcCHHHHHhcCcccccc-----ccCCCCCCEEEEEECCCccCCCce
Confidence 9876 4444555544444 445555543 334566666554322110 011223899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH------Hh
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA------ID 431 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~------i~ 431 (486)
|+++|+++...+......+++ ..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+.+.+.+. ..
T Consensus 198 V~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 275 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVATGL-SHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAV 275 (549)
T ss_dssp EEEEHHHHHHHHHHHHHHHCC-CTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEEC
T ss_pred EEEcHHHHHHHHHHHHHHcCC-CCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeC
Confidence 999999999999888888888 78899999999999998866 7788999999988765 444444444431 11
Q ss_pred hhhHHHHhhhccccc--ccccccceeecCCCCCC
Q psy2842 432 RANLKSISNAQKIQK--FEFLPADFSIPTGELGP 463 (486)
Q Consensus 432 ~~~~~~l~~~~~i~~--~~l~p~~~~~~~g~ltp 463 (486)
+..+..+........ ..+........+|+..+
T Consensus 276 P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 276 PPALNVLVNTLESSNKTYDWSYLKVFATGAWPVA 309 (549)
T ss_dssp HHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCC
T ss_pred CHHHHHHHhhhhhhcccCCccceeEEEeCCccCC
Confidence 222334443332222 34455555566666544
No 9
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.93 E-value=5e-25 Score=229.39 Aligned_cols=265 Identities=16% Similarity=0.178 Sum_probs=180.4
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+.+++. .+++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.+
T Consensus 39 ~~A~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~ 114 (529)
T 2v7b_A 39 KTAYIDD----TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVY 114 (529)
T ss_dssp SEEEECS----SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHH
T ss_pred ceEEEeC----CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHH
Confidence 3456653 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCC-eEEEEecCCCCCC-CcccHHHHHHhccCCCchhhHhhhccCCCCceEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKL-KAIVQYEGKPDKP-GVISWDELMELGRAAPDESLDRVLETIATNECCT 345 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~-~~iv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 345 (486)
+++.+++++++++++ ..+.+.......+.. ..+++.+...... ....++++......... .....++++++
T Consensus 115 ~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~a~ 187 (529)
T 2v7b_A 115 MLTHSHARAVIASGA-LVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAK------AAATGCDDIAF 187 (529)
T ss_dssp HHHHHTCSEEEEEGG-GHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSS------CCCCCTTSEEE
T ss_pred HHhccCCeEEEechh-hhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCccc------ccCCCCCCeEE
Confidence 999999999999876 344444444434444 4455444322111 12346666543221110 11345789999
Q ss_pred EEcCCCCCCCCceeEechHHH-HHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC--CChHHH
Q psy2842 346 LVYTSGTEGASKPVMLSHDNI-TFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD--KNALKV 422 (486)
Q Consensus 346 i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~--~~~~~~ 422 (486)
|+|||||||.||||+++|+++ ..........+++ .++|++++.+|++|.+++...++.++..|+++++.. .++..+
T Consensus 188 i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 266 (529)
T 2v7b_A 188 WLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI-AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAI 266 (529)
T ss_dssp EEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC-CTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHH
T ss_pred EEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC-CCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHH
Confidence 999999999999999999998 4444333333455 678999999999999998888889999999999863 344455
Q ss_pred HHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 423 YKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 423 ~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
.+.+.+. ..+..+..+...+...........+...+|+..+.
T Consensus 267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~ 314 (529)
T 2v7b_A 267 FARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPR 314 (529)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCH
T ss_pred HHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCH
Confidence 5555441 12233344444443333211234445556665443
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.93 E-value=1.5e-24 Score=230.94 Aligned_cols=259 Identities=15% Similarity=0.220 Sum_probs=192.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|++++++.++||+++|++++|+++..+.+++.++++.+++++++
T Consensus 105 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li 184 (652)
T 1pg4_A 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVI 184 (652)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH--------HHHHHHHhhcCC--CCeEEEEecCCCCC-----CCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 279 VEDDKQ--------LEKILKVKAQCP--KLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 279 ~~~~~~--------~~~~~~~~~~~~--~~~~iv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
+++... .+.+.......+ .++++++++..... .....|++++........ .....++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~ 258 (652)
T 1pg4_A 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ------PEAMNAEDP 258 (652)
T ss_dssp EESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCC------CCCEETTSE
T ss_pred EcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCCCC------ccccCCCCC
Confidence 987521 223333333332 45566665432111 123557776654321110 112347899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHH-HHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-----
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK----- 417 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~----- 417 (486)
++|+|||||||.||||+++|+++..... .....+++ .++|++++.+|++|..|....++.+|..|+++++.+.
T Consensus 259 a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~ 337 (652)
T 1pg4_A 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY-HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 337 (652)
T ss_dssp EEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSS
T ss_pred EEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCC-CCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCC
Confidence 9999999999999999999999886654 34456777 6889999999999999988888999999999999763
Q ss_pred ChHHHHHHHHHH------HhhhhHHHHhhhcc--cccccccccceeecCCCCCCc
Q psy2842 418 NALKVYKATQAA------IDRANLKSISNAQK--IQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 418 ~~~~~~~~i~~~------i~~~~~~~l~~~~~--i~~~~l~p~~~~~~~g~ltpt 464 (486)
++..+.+.+.+. ..+..+..+..... .....+.+.+....+|+..+.
T Consensus 338 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 392 (652)
T 1pg4_A 338 TPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP 392 (652)
T ss_dssp STTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCH
T ss_pred CHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCH
Confidence 445555555542 12333444444332 344556666666667765543
No 11
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.93 E-value=1.2e-24 Score=231.90 Aligned_cols=258 Identities=16% Similarity=0.193 Sum_probs=192.3
Q ss_pred ccceehhhhHhhHHHHHHHHH-HcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~-~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||+++.+++.++|..|. +.|+++|++|+++++|++++++.++||+++|++++|+++..+.+++.++++.++++++
T Consensus 111 ~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 190 (663)
T 1ry2_A 111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVV 190 (663)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEE
Confidence 467999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChh--------HHHHHHHHhhcCCCCeEEEEecCCCC------CCCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 278 VVEDDK--------QLEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 278 i~~~~~--------~~~~~~~~~~~~~~~~~iv~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
++++.. ..+.+.......+.++++++++.... ......|.+++........ .....++++
T Consensus 191 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~ 264 (663)
T 1ry2_A 191 ITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYP------CTPVDSEDP 264 (663)
T ss_dssp EEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCC------CCCEETTSC
T ss_pred EEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhcCCCCC------ccccCCCCc
Confidence 998752 12344445555666777776653221 1224567776653321110 112357899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-----
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK----- 417 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~----- 417 (486)
++|+|||||||.||||+++|.++...... ....+++ .++|++++.+|++|..|..+.++.+|..|+++++.+.
T Consensus 265 a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~ 343 (663)
T 1ry2_A 265 LFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT-HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYP 343 (663)
T ss_dssp CEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC-CSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSS
T ss_pred eEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC-CCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCC
Confidence 99999999999999999999998866543 4455677 6789999999999999988888999999999999764
Q ss_pred ChHHHHHHHHHH------HhhhhHHHHhhhcc--cccccccccceeecCCCCCC
Q psy2842 418 NALKVYKATQAA------IDRANLKSISNAQK--IQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 418 ~~~~~~~~i~~~------i~~~~~~~l~~~~~--i~~~~l~p~~~~~~~g~ltp 463 (486)
++..+.+.+.+. ..+..+..+..... .....+.+.+....+|+..+
T Consensus 344 ~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 397 (663)
T 1ry2_A 344 NYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA 397 (663)
T ss_dssp CTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCC
Confidence 344555555441 12222334433322 34445555566666666544
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.93 E-value=1e-24 Score=228.71 Aligned_cols=255 Identities=18% Similarity=0.208 Sum_probs=188.6
Q ss_pred ccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||+++.++++++|..|.+. |+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.++++++
T Consensus 71 ~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 150 (570)
T 3c5e_A 71 ELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAI 150 (570)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred eeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEE
Confidence 35799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
+++++ ..+.+..+....+.++.++..++.. .++..++++++........ .....++++++|+|||||||.||
T Consensus 151 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PK 222 (570)
T 3c5e_A 151 VAGDE-VIQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKKLLNEASTTHH------CVETGSQEASAIYFTSGTSGLPK 222 (570)
T ss_dssp EEETT-THHHHHHHGGGCTTCCEEEEESSSC-CTTSEEHHHHHHHSCSCCC------CCCCBTTSEEEEEECCCSSSSCC
T ss_pred EechH-HHHHHHHHhhcCCceeEEEEecccC-ccccccHHHHhhccccccc------ccCCCCCCcEEEEECCCCCCCCC
Confidence 99876 4455555566677776666665422 2244567776654332111 01345789999999999999999
Q ss_pred eeEechHHHHH-HHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC---CChHHHHHHHHHH----
Q psy2842 358 PVMLSHDNITF-NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD---KNALKVYKATQAA---- 429 (486)
Q Consensus 358 gV~~sh~~l~~-~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~---~~~~~~~~~i~~~---- 429 (486)
||+++|+.+.. ..... ..+++ ..+|++++.+|++|.+++...++.++..|+++++.. .++..+.+.+.+.
T Consensus 223 gV~~sh~~~~~~~~~~~-~~~~~-~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 223 MAEHSYSSLGLKAKMDA-GWTGL-QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEEEHHHHHHHHHHHT-TTTSC-CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EEEechHHHHhhhhhhh-hhcCC-CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 99999994332 33332 44556 678999999999999998878899999999999975 3555555554431
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+... ......+......+.+|+..+.
T Consensus 301 ~~~~P~~~~~l~~~-~~~~~~~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQ-DLSSYKFPHLQNCVTVGESLLP 336 (570)
T ss_dssp EEECHHHHHHHHTS-CTTTCCCTTCCEEEEESSCCCH
T ss_pred EeccHHHHHHHHhc-cccccccccceEEEEcCCcCCH
Confidence 112223334333 2333344444555566665443
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.93 E-value=7.7e-25 Score=226.88 Aligned_cols=218 Identities=14% Similarity=0.183 Sum_probs=171.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 29 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 108 (509)
T 3ivr_A 29 GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVV 108 (509)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEE
T ss_pred CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+.+.......+.+..++..++... .+.++......... ......++++++|+|||||||.|||
T Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~d~a~i~~TSGTTG~PKg 177 (509)
T 3ivr_A 109 AGTD-YRDIVAGVLPSLGGVKKAYAIGDGSG-----PFAPFKDLASDTPF-----SAPEFGAADGFVIIHTAAVGGRPRG 177 (509)
T ss_dssp ECST-THHHHHHHGGGCSSCCEEEESSCCCS-----SCEEGGGTCCCSCC-----CCCCCCTTSEEEEEEEEC--CCEEE
T ss_pred ECcc-hhhhHHhhhcccCCceEEEEcCCCCc-----ChhhHhhccCCCCC-----CcCCCCccccEEEEeCCCCCCCCcE
Confidence 9876 33333444456666766666554221 11111111111000 0123467899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHHHHHH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQA 428 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~ 428 (486)
|+++|+++..........+++ .++|++++.+|++|.+|+...+...+..|+++++...++....+.+.+
T Consensus 178 V~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 246 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVDAWRL-TEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEA 246 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHH
T ss_pred EEEehHHHHHHHHHHHHhhCC-CCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHHHHH
Confidence 999999999999888888888 788999999999999998776666777777777775566555555544
No 14
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.93 E-value=2.3e-25 Score=230.34 Aligned_cols=251 Identities=19% Similarity=0.188 Sum_probs=183.0
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.++++++++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
+++.. +.+..+...... .+...+... ...+.+.......... .....++++++|+|||||||.||||
T Consensus 107 ~~~~~-~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PKgV 173 (503)
T 4fuq_A 107 DPSKR-DGIAAIAAKVGA--TVETLGPDG----RGSLTDAAAGASEAFA------TIDRGADDLAAILYTSGTTGRSKGA 173 (503)
T ss_dssp CGGGT-TTTHHHHHHHTC--EEEECCTTS----CSHHHHHHHTSCSCCC------CCCCCTTSEEEEEECC--CCSCCEE
T ss_pred Cchhh-HHHHHHHhhcCc--eEEEecCCc----ccccchhhhcCCCCcC------cCCCCCCCeEEEEECCCcccCCeEE
Confidence 87522 222222222221 233332211 1122222211111100 1134578999999999999999999
Q ss_pred EechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHH----HHhhhh
Q psy2842 360 MLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQA----AIDRAN 434 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~----~i~~~~ 434 (486)
+++|+++.+........+++ .++|++++.+|++|.+|+...++.++..|+++++.+. ++..+++.+.+ ...+..
T Consensus 174 ~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~t~~~~~P~~ 252 (503)
T 4fuq_A 174 MLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMARATVLMGVPTF 252 (503)
T ss_dssp EEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHTTCCEEEECHHH
T ss_pred EEeHHHHHHHHHHHHHHhCC-CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHhhcCEEEEHHHH
Confidence 99999999999888888888 7899999999999999877777888999999888765 54455544432 011233
Q ss_pred HHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 435 LKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 435 ~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+..+...+......+....+.+.+|+..+.
T Consensus 253 ~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 253 YTRLLQSPRLTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp HHHHHTCTTCSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHhCCCccccchhhcEEEEECCCCCCH
Confidence 455555555555555555666677765543
No 15
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.93 E-value=1.8e-24 Score=227.31 Aligned_cols=261 Identities=12% Similarity=0.134 Sum_probs=194.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 84 ~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii 163 (580)
T 3etc_A 84 EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIV 163 (580)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEE
T ss_pred EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH-HHHHHHHhhcCCCC-eEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCC
Q psy2842 279 VEDDKQ-LEKILKVKAQCPKL-KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 356 (486)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 356 (486)
++.+.. .+.+..+....+.+ ..++..++. ...+..++.+.+......... ........++++++|+|||||||.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~P 240 (580)
T 3etc_A 164 CIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLEGWIDFRKELEESSPIFER--PTGEVSTKNEDICLVYFSSGTAGFP 240 (580)
T ss_dssp EESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCTTCEEHHHHHHHSCSCCCC--CCGGGSCCTTSEEEEEEECCSSSSC
T ss_pred EecchhHHHHHHHHhhhCCCcceEEEEeCCc-cccccccHHHHHhhCCccccc--CccccCCCCCCcEEEEEeCCCCCCc
Confidence 987632 24445555555554 445555433 234667777776654332110 0001235678999999999999999
Q ss_pred ceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC---CChHHHHHHHHHH----
Q psy2842 357 KPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD---KNALKVYKATQAA---- 429 (486)
Q Consensus 357 KgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~---~~~~~~~~~i~~~---- 429 (486)
|||+++|.++...........++ .+++++++.+|++|..+.+..++.++..|+++++.+ .++..+++.+.+.
T Consensus 241 KgV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~ 319 (580)
T 3etc_A 241 KMVEHDNTYPLGHILTAKYWQNV-EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT 319 (580)
T ss_dssp EEEEEETTHHHHHHHHHHTTSCC-CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCE
T ss_pred cEEEeccHHHHHHHHHHHHhhCC-CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeE
Confidence 99999999988776665555666 678999999999999888777889999999998863 3555555555442
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+.. .......+.+....+.+|+..+.
T Consensus 320 ~~~~P~~~~~l~~-~~~~~~~l~~lr~i~~gGe~l~~ 355 (580)
T 3etc_A 320 FCAPPTIYRFLIK-EDLSHYNFSTLKYAVVAGEPLNP 355 (580)
T ss_dssp EEECHHHHHHHHT-SCC---CCTTCCEEEECSSCCCH
T ss_pred EEccHHHHHHHHh-cccccCCCccceEEEEccCCCCH
Confidence 11222333333 34455556666666777776554
No 16
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.92 E-value=6e-24 Score=225.17 Aligned_cols=215 Identities=9% Similarity=0.142 Sum_probs=173.5
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+++++. .+++||+++.++++++|..|.+.|+++|++|+++++++.++++.++|++++|++++|+++..+.+++.+
T Consensus 41 ~~Av~~~----~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~ 116 (617)
T 3rg2_A 41 SIAVIDG----ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNA 116 (617)
T ss_dssp SEEEEET----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHH
T ss_pred CeEEecC----CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHH
Confidence 4566663 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHH----HHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 268 CLVTSDANICVVEDDKQL----EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~----~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
+++.+++++++++..... .....+....+.++.+...+... ...+.+.......... .....++++
T Consensus 117 ~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~ 186 (617)
T 3rg2_A 117 YASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG----EHNLQDAINHPAEDFT------ATPSPADEV 186 (617)
T ss_dssp HHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS----TTBHHHHHHSCCSSCC------CCCCCTTSE
T ss_pred HHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc----ccchhhhhcccccccC------CCCCCCCCe
Confidence 999999999999875321 22333444555565555544321 2234444332211110 123457899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK 417 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~ 417 (486)
++|+|||||||.||||+++|+++.+.+......+++ ..++++++.+|++|.++... .++.++..|+++++.+.
T Consensus 187 a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~ 260 (617)
T 3rg2_A 187 AYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQF-TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260 (617)
T ss_dssp EEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS
T ss_pred EEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCC-CCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC
Confidence 999999999999999999999999999888888888 78899999999999998765 78999999999999765
No 17
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.92 E-value=1.9e-24 Score=222.33 Aligned_cols=197 Identities=18% Similarity=0.206 Sum_probs=150.8
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCC---CCCHHHHHHhhhhCCceE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT---TNSPEACLHCLVTSDANI 276 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~---~~~~~~l~~~~~~~~~~v 276 (486)
.++||+++.++++++|..|.+.|. +|++|+++++|+.++++.++|++++|++++|+++ ..+.+++.++++.+++++
T Consensus 57 ~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~ 135 (480)
T 3t5a_A 57 ITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVA 135 (480)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence 679999999999999999998895 9999999999999999999999999999999999 778999999999999999
Q ss_pred EEEcChhHHHHHHHHhhcCCCCe--EEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 277 CVVEDDKQLEKILKVKAQCPKLK--AIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 277 vi~~~~~~~~~~~~~~~~~~~~~--~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
++++++. .+.+.......+... .++..+..... .. . ........++++++|+|||||||
T Consensus 136 vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~--~~~~~~~~~~d~a~i~~TSGTTG 196 (480)
T 3t5a_A 136 ILTTSSA-VDDVVQHVARRPGESPPSIIEVDLLDLD---------------AP-N--GYTFKEDEYPSTAYLQYTSGSTR 196 (480)
T ss_dssp EEECTTT-HHHHHHTCC------CCEEEEGGGSCTT---------------CC------CCCCSSCCSEEEEECC-----
T ss_pred EEeChhH-HHHHHHHHhccccccccceeEecccccc---------------cc-c--CCCCCCCCCCceEEEEecCCCCC
Confidence 9998763 333333332222211 22322211100 00 0 01112345789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCC------CeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESA------ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~------~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
.||||+++|+++..++......+.. .. ++++++.+|++|.+|+...++.++..|+++++.++
T Consensus 197 ~PKgV~~th~~l~~~~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 264 (480)
T 3t5a_A 197 TPAGVVMSHQNVRVNFEQLMSGYFA-DTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSP 264 (480)
T ss_dssp -CCCEEEEHHHHHHHHHHHHHHHCT-TTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCH
T ss_pred CCcEEEEeHHHHHHHHHHHHHHhcc-ccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECH
Confidence 9999999999999988888877776 44 89999999999999998899999999999999864
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.91 E-value=6.6e-24 Score=220.03 Aligned_cols=242 Identities=15% Similarity=0.190 Sum_probs=172.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||++++++++++|..|.+.|++++++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 24 ~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i 103 (512)
T 3fce_A 24 DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLL 103 (512)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEE
T ss_pred CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++.... .......+.. ...+.++......... .......++++++|+|||||||.|||
T Consensus 104 ~~~~~~----------~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~i~~TSGTTG~PKg 161 (512)
T 3fce_A 104 SATAVT----------VTDLPVRIVS--------EDNLKDIFFTHKGNTP----NPEHAVKGDENFYIIYTSGSTGNPKG 161 (512)
T ss_dssp ESSCCC----------SSCCSSEEEE--------THHHHHHHHHTTTCCC----CGGGSCCTTSEEEEEEECC----CEE
T ss_pred ecCccc----------ccccccceec--------hhhhhhhcccccccCC----CccccCCCCCeEEEEECCCCCCCCce
Confidence 875411 0111101110 1112222222211111 01124567899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC----ChHHHHHHHHHH-----
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK----NALKVYKATQAA----- 429 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~----~~~~~~~~i~~~----- 429 (486)
|+++|+++..........+++ .++|++++.+|++|..++ ..++.++..|+++++.+. ++..+.+.+.+.
T Consensus 162 v~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~ 239 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVEDFNL-QTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVW 239 (512)
T ss_dssp EEEEHHHHHHHHHHHHHHTTC-CSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEE
T ss_pred EEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEE
Confidence 999999999998888888888 789999999999999986 468899999999999875 333333333321
Q ss_pred -HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 -IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 -i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+..........+......+.+|+..+.
T Consensus 240 ~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~ 275 (512)
T 3fce_A 240 TSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPN 275 (512)
T ss_dssp EECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCH
T ss_pred EecHHHHHHHHhhccccchhCccccEEEEecCcCCH
Confidence 01122233333333344444445555566665443
No 19
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.91 E-value=2.2e-24 Score=227.58 Aligned_cols=248 Identities=18% Similarity=0.171 Sum_probs=176.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCC---CHHHHHHhhhhCCce
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---SPEACLHCLVTSDAN 275 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~---~~~~l~~~~~~~~~~ 275 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|.. ..+++.+++..++++
T Consensus 38 ~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~ 117 (590)
T 3kxw_A 38 EETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPV 117 (590)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCS
T ss_pred eEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999988 457889999999999
Q ss_pred EEEEcChhHHHHHHHHh-hcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 276 ICVVEDDKQLEKILKVK-AQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 276 vvi~~~~~~~~~~~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
+++++.+. ...+.... ...+....+..... +.+.... ..........++++++|+|||||||
T Consensus 118 ~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~~d~a~i~~TSGTTG 180 (590)
T 3kxw_A 118 IVLMIADH-IKKFTADELNTNPKFLKIPAIAL----------ESIELNR------SSSWQPTSIKSNDIAFLQYTSGSTM 180 (590)
T ss_dssp EEEECHHH-HHHHCC-----CCEETTEEEEEG----------GGCCGGG------GGGCCCCCCCTTSEEEEEECSSCSS
T ss_pred EEEeCHHH-HHHHHHhhhhhcccccccceeec----------hhccccc------cccCCCCCCCCCCeEEEEeCcCCCC
Confidence 99987652 22211111 11111111111110 0000000 0000112346789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-----ChHHHHHHHHHH
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-----NALKVYKATQAA 429 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-----~~~~~~~~i~~~ 429 (486)
.||||+++|+++...+......+++ .+++++++++|++|.+|+...++.++..|+++++.++ ++..+++.+.+.
T Consensus 181 ~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~ 259 (590)
T 3kxw_A 181 HPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKY 259 (590)
T ss_dssp SCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHH
T ss_pred CceEEEeeHHHHHHHHHHHHHhhCC-CCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHh
Confidence 9999999999999999988888888 7899999999999999987778999999999999865 333444444331
Q ss_pred Hh------hhhHHHHhhh---cccccccccccceeecCCCCCCc
Q psy2842 430 ID------RANLKSISNA---QKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 i~------~~~~~~l~~~---~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
-. +..+..+... +......+.+....+.+|+..+.
T Consensus 260 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~ 303 (590)
T 3kxw_A 260 KATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVRE 303 (590)
T ss_dssp TCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCH
T ss_pred CCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCH
Confidence 10 1111222221 33444455566666677765553
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.91 E-value=3.8e-24 Score=238.30 Aligned_cols=267 Identities=19% Similarity=0.242 Sum_probs=193.0
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
..+++.++ ...+||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|..+++++.++
T Consensus 78 ~Al~~~~~--~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~ 155 (979)
T 3tsy_A 78 PCLINGPT--GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155 (979)
T ss_dssp EEEEETTT--CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHH
T ss_pred eEEEECCC--CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHH
Confidence 44554322 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCC---CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEE
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDRVLETIATNECCT 345 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 345 (486)
++.+++++++++++ ..+.+..+.... .. .++..++... ..+..++.++....... ..........++++++
T Consensus 156 l~~~~~~~vi~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~ 229 (979)
T 3tsy_A 156 AKASNTKLIITEAR-YVDKIKPLQNDD-GV-VIVCIDDNESVPIPEGCLRFTELTQSTTEA---SEVIDSVEISPDDVVA 229 (979)
T ss_dssp HHHHTEEEEEECST-TTTTSHHHHHTS-CC-EEEECCCCTTSCCCTTEEEGGGTSSCCSGG---GGGSCCSCCCTTSEEE
T ss_pred HHHcCCeEEEEChH-HHHHHHHHhhcC-Cc-eEEEeCCcccccCCcccccHHHHhhccccc---cccCCcCCCCccceEE
Confidence 99999999999875 222222222222 22 2344433211 12344454443322110 0011112356899999
Q ss_pred EEcCCCCCCCCceeEechHHHHHHHHHHHHH----ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChH
Q psy2842 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NAL 420 (486)
Q Consensus 346 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~ 420 (486)
|+|||||||.||||+++|+++...+...... +.+ .+++++++.+|++|.+++...++.++..|+++++.+. ++.
T Consensus 230 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~ 308 (979)
T 3tsy_A 230 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEIN 308 (979)
T ss_dssp CCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCC-CSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHH
T ss_pred EEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccC-CCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHH
Confidence 9999999999999999999999877665432 234 6789999999999999998888999999999999865 444
Q ss_pred HHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 421 KVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 421 ~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
.+.+.+.+. ..+..+..+...+......+....+.+.+|+..+.
T Consensus 309 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~ 358 (979)
T 3tsy_A 309 LLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGK 358 (979)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCS
T ss_pred HHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCH
Confidence 455554442 12333455555555566666666777777876654
No 21
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.91 E-value=4e-24 Score=221.15 Aligned_cols=247 Identities=14% Similarity=0.176 Sum_probs=174.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 27 ~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 106 (504)
T 1t5h_X 27 GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV 106 (504)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E--cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCC-chhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 279 V--EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP-DESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~--~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
+ +++ ..+.+ ....+.++ ++. ++++........ ..... .....++++++|+|||||||.
T Consensus 107 ~~~~~~-~~~~~---~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~ 167 (504)
T 1t5h_X 107 IAVGRQ-VADAI---FQSGSGAR-IIF------------LGDLVRDGEPYSYGPPIE--DPQREPAQPAFIFYTSGTTGL 167 (504)
T ss_dssp ECC--C-HHHHH---HHHCCCCE-EEE------------GGGTEETTEECCCSCCCC--CCCCCTTSEEEEEECCC---C
T ss_pred Eecchh-hhhhh---hhccccce-eEE------------ecchhhcCcccccCCccC--CCCCCCCCeEEEEeCCCCCCC
Confidence 8 554 22222 11222332 221 111111100000 00000 013457899999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH----
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA---- 429 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~---- 429 (486)
||||+++|+++.+........+++. ..++++++.+|++|.+|+...++.++..|+++++.+. ++..+.+.+.+.
T Consensus 168 PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~ 247 (504)
T 1t5h_X 168 PKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247 (504)
T ss_dssp CCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCE
T ss_pred CCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeE
Confidence 9999999999998888777766652 4678999999999999987788999999999999765 444555555442
Q ss_pred --HhhhhHHHHhhhc-c-cccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQ-K-IQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~-~-i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+.... . .....+.+....+.+|+..+.
T Consensus 248 ~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~ 286 (504)
T 1t5h_X 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPD 286 (504)
T ss_dssp EECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCH
T ss_pred EEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCH
Confidence 1233344444433 1 233445555666667765554
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.91 E-value=1.9e-23 Score=218.73 Aligned_cols=195 Identities=18% Similarity=0.226 Sum_probs=151.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 62 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 62 NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++. ... .........+......... ..... .......++++++|+|||||||.|||
T Consensus 142 ~~~~~-~~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~------~~~~~~~~~d~a~i~~TSGTTG~PKg 199 (563)
T 1amu_A 142 TQKHL-VHL----IHNIQFNGQVEIFEEDTIK-----------IREGT------NLHVPSKSTDLAYVIYTSGTTGNPKG 199 (563)
T ss_dssp ECGGG-HHH----HTTSCCCSEEEECCCSTTT-----------TSCCS------CCCCCCCTTSEEEEEEEC-----CEE
T ss_pred EcCch-hhh----hhhccccCceeeecchhhc-----------cccCc------cCCCCCCCCCeEEEEECCCCCCCCcE
Confidence 98752 211 1122211223332221100 00000 00112357899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.+........+++ .++|++++.+|++|..+. ..++.++..|+++++.+.
T Consensus 200 V~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 200 TMLEHKGISNLKVFFENSLNV-TEKDRIGQFASISFDASV-WEMFMALLTGASLYIILK 256 (563)
T ss_dssp EEEESHHHHHHHHHHHHTSCC-CTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCH
T ss_pred EEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcCh
Confidence 999999999888877777777 688999999999999886 467889999999999765
No 23
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.91 E-value=3.7e-23 Score=217.59 Aligned_cols=199 Identities=18% Similarity=0.221 Sum_probs=160.7
Q ss_pred CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCC-------HHHHHHhhh
Q psy2842 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS-------PEACLHCLV 270 (486)
Q Consensus 198 ~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~-------~~~l~~~~~ 270 (486)
..+++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+ .+++.++++
T Consensus 46 ~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 46 LEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred hCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCC
Q psy2842 271 TSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTS 350 (486)
Q Consensus 271 ~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 350 (486)
.+++++++++++ ....+.......+.+..+. . .......... .......++++++|+|||
T Consensus 126 ~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~-----~~~~~~~~~d~a~i~~TS 185 (576)
T 3gqw_A 126 SCQPAAIITGDE-WLPLVNAATHDNPELHVLS-------------H-AWFKALPEAD-----VALQRPVPNDIAYLQYTS 185 (576)
T ss_dssp HHCCSEEEECGG-GHHHHHHHGGGCTTCEEEE-------------H-HHHHTSCCCC-----CCCCCCCTTSEEEEECTT
T ss_pred hcCCCEEEecHH-HHHHHHHhhccCCcceecc-------------h-hhhhcccccc-----cccCCCCCCCeEEEEeCC
Confidence 999999999876 4444455544444432211 0 0011110000 011234578999999999
Q ss_pred CCCCCCceeEechHHHHHHHHHHHHH-ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 351 GTEGASKPVMLSHDNITFNAACIIQY-FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 351 GTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||||.||||+++|+++..++...... +++ .++|++++.+|++|.+|+...++.++..|+++++...
T Consensus 186 GTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (576)
T 3gqw_A 186 GSTRFPRGVIITHREVMANLRAISHDGIKL-RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRT 252 (576)
T ss_dssp SCSSSCCCEEEEHHHHHHHHHHHHHTTSCC-CTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCH
T ss_pred CCCCCCceEEeeHHHHHHHHHHhhhcccCC-CCcceEEEcCCccccccHHHHHHHHHhcCceEEEcch
Confidence 99999999999999999887776554 666 7889999999999999998888899999999988764
No 24
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.91 E-value=2e-23 Score=216.34 Aligned_cols=239 Identities=18% Similarity=0.188 Sum_probs=176.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||++++++++++|..|.+. |.+++++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.++++++
T Consensus 24 ~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 24 GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEE
T ss_pred CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEE
Confidence 47899999999999999999774 77889999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
++++... ..... ......++.++......... ......++++++|+|||||||.||
T Consensus 104 i~~~~~~-------~~~~~------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~PK 159 (511)
T 3e7w_A 104 IHAAGLS-------IDAVG------------QQIQTVSAEELLENEGGSVS-----QDQWVKEHETFYIIYTSGSTGNPK 159 (511)
T ss_dssp EESSSCC-------TTCCC------------CSSCEEEHHHHHTSCSCCCC-----GGGSCCTTSEEEEEEECCTTSSCE
T ss_pred Eeccccc-------chhcc------------cccceecHhhhhccccCCcc-----ccccCCCCCeEEEEECCCCCCCCC
Confidence 9865411 00000 00123344555443322111 112346789999999999999999
Q ss_pred eeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC----hHHHHHHHHHH----
Q psy2842 358 PVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN----ALKVYKATQAA---- 429 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~----~~~~~~~i~~~---- 429 (486)
||+++|+++..........+++ ..++++++.+|++|..++ ..++.++..|+++++.+.. +..+.+.+.+.
T Consensus 160 gV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 160 GVQISAANLQSFTDWICADFPV-SGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEEHHHHHHHHHHHHHHSTT-TTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEEcHHHHHHHHHHHHHhcCC-CccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 9999999999999888888888 788999999999999886 5688999999999998652 23333333321
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCC
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltp 463 (486)
..+..+..+...+......+......+.+|+..+
T Consensus 238 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~ 273 (511)
T 3e7w_A 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLP 273 (511)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCC
T ss_pred EEecHHHHHHHHhccccccccCCcccEEEEecCCCC
Confidence 1122233444444444444444455556665444
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.90 E-value=1.4e-22 Score=209.58 Aligned_cols=228 Identities=16% Similarity=0.143 Sum_probs=159.4
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+.+++. ..++||++++++++++|..|.+. +|++|+++++|+.++++.++|++++|++++|+++..+.+++.+
T Consensus 17 ~~Al~~~----~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~ 89 (501)
T 3ipl_A 17 HIAITDG----QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTN 89 (501)
T ss_dssp SEEEECS----SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHH
T ss_pred ceEEEeC----CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHH
Confidence 3456653 46899999999999999999775 6999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEe---cCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY---EGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+++.+++++++++++.... .... .....+..+... .+.........+.......... ............+++++
T Consensus 90 ~l~~~~~~~li~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a 166 (501)
T 3ipl_A 90 QMRSIDVQLIFCTLPLELR-GFQI-VSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK-ESPSNILNTSFNLDDIA 166 (501)
T ss_dssp HHHHTTCCEEEESSCCCCT-TSEE-EETTC---------------------------------CCHHHHTCCCCCTTSEE
T ss_pred HHHhcCCCEEEEccccccc-cccc-cccccceeeeeecccccccccccccccccchhhcccc-CCcccccccCCCCCCeE
Confidence 9999999999998652110 0000 000111100000 0000000000000000000000 00011112235688999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHH
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVY 423 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~ 423 (486)
+|+|||||||.||||+++|+++..........+++ .+++++++.+|++|.+|+.. ++.++..|+++++.+. ++..+.
T Consensus 167 ~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~ 244 (501)
T 3ipl_A 167 SIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGF-DRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIVDKFNAEQIL 244 (501)
T ss_dssp EEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHH
T ss_pred EEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCC-CccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeCCCCCHHHHH
Confidence 99999999999999999999999998888888888 78899999999999999865 7889999999999876 444444
Q ss_pred HHHH
Q psy2842 424 KATQ 427 (486)
Q Consensus 424 ~~i~ 427 (486)
+.+.
T Consensus 245 ~~i~ 248 (501)
T 3ipl_A 245 TMIK 248 (501)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.89 E-value=7.4e-23 Score=216.34 Aligned_cols=193 Identities=16% Similarity=0.168 Sum_probs=150.8
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.+++. .+++||+++.++++++|..|.+.|+++|++|+++++++.++++.++|++++|+.++|++|..+.+++.++
T Consensus 44 ~Av~~~----~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~i 119 (620)
T 4dg8_A 44 EAIRDR----FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAEL 119 (620)
T ss_dssp EEEEET----TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHH
T ss_pred eEEEcC----CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHH
Confidence 445553 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEc
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY 348 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 348 (486)
++.++++++++.+... ........+ ...... .... ........++++++|+|
T Consensus 120 l~~~~~~~vl~~~~~~--------~~~~~~~~~-~~~~~~----------------~~~~---~~~~~~~~~~d~a~iiy 171 (620)
T 4dg8_A 120 CRQVDCRLILDCSTTP--------TPANGLPCV-PVRHLP----------------AAPA---SVARPCFAADQIAYINF 171 (620)
T ss_dssp HHHHTEEEEEECCSSC--------CCCTTSCEE-EGGGCC----------------CCCC---CSSCCCCCTTSEEEEEE
T ss_pred HHhCCCcEEEecCccc--------ccccCCcee-eeccCC----------------cCCc---cccCCCCCCCCeEEEEE
Confidence 9999999999665410 011111111 110000 0000 00011235789999999
Q ss_pred CCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 349 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 349 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
||||||.||||+++|+++.+.... ...+++ .++++++..+|++|..+. ..++.++..|+++++.+
T Consensus 172 TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~ 236 (620)
T 4dg8_A 172 SSGTTGRPKAIACTHAGITRLCLG-QSFLAF-APQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLND 236 (620)
T ss_dssp EBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT-CTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECC
T ss_pred CCCccccCeEEEEchHHHHHHHHH-HHhhCC-CCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCc
Confidence 999999999999999999766544 334555 678999999999998886 56899999999999964
No 27
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.89 E-value=5e-23 Score=216.12 Aligned_cols=201 Identities=14% Similarity=0.152 Sum_probs=154.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 98 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 177 (570)
T 4gr5_A 98 ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLV 177 (570)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ .....+....++..+.... .... ........++++++|+|||||||.|||
T Consensus 178 ~~~~--------~~~~~~~~~~~~~~~~~~~------------~~~~------~~~~~~~~~~d~a~i~~TSGTTG~PKg 231 (570)
T 4gr5_A 178 TSRP--------LSGRLTGTTTLYVEDEAAS------------DAPA------GNLATGVGPEDVACVMFTSGSTGRPKG 231 (570)
T ss_dssp ECTT--------TTTSSCSSEEEECCC-------------------C------CCCCCCCCTTSEEEEECCSSCCSSCCC
T ss_pred ecch--------hhhcccCCcceeeeccccc------------cccc------cccCCCCCCCCeEEEEECCcCCCCCeE
Confidence 9875 2233333333322111100 0000 001123457899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC---ChHHHHHHHHH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK---NALKVYKATQA 428 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~---~~~~~~~~i~~ 428 (486)
|+++|+++...... ...+++ .+++++++.+|++|..+. ..++.++..|+++++.+. ++..+.+.+.+
T Consensus 232 V~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~ 301 (570)
T 4gr5_A 232 VMSPHRALTGTYLG-QDYAGF-GPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVAR 301 (570)
T ss_dssp EEEEHHHHHHHHSS-CCSSCC-STTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHHHH
T ss_pred EEEecHHHHHHHHh-hhhcCC-CCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHHHH
Confidence 99999998765433 223344 678999999999986554 578889999999998753 44444444443
No 28
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.89 E-value=4.8e-22 Score=206.49 Aligned_cols=193 Identities=16% Similarity=0.191 Sum_probs=149.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 27 ~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 27 GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++. ....... ....+.++........+ ........++++++|+|||||||.|||
T Consensus 107 ~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKg 162 (521)
T 3l8c_A 107 AIEEF--------PLTIEGI-------------SLVSLSEIESAKLAEMP---YERTHSVKGDDNYYIIFTSGTTGQPKG 162 (521)
T ss_dssp ESSCC--------CSCCTTS-------------EEEEHHHHHHHHHHTCC---CCCSSCCCTTSEEEEEECCC---CCCE
T ss_pred ecCcc--------ccccccC-------------cccchhhhhhcccccCC---cccCCCCCCCCcEEEEEcCCCCCCCCE
Confidence 97651 1111111 11222222221100000 001123467899999999999999999
Q ss_pred eEechHHHHHHHHHHHHH--ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQY--FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~--~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.......... ++. ..++++++..|++|..+. ..++.++..|+++++.+.
T Consensus 163 V~~sh~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 163 VQISHDNLLSFTNWMIEDAAFDV-PKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPK 221 (521)
T ss_dssp EEEEHHHHHHHHHHHHHCTTTCC-CSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCG
T ss_pred EEEehHHHHHHHHHHhhccccCC-CCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCH
Confidence 999999999877766655 444 678899999999998775 567888999999998765
No 29
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.89 E-value=9.3e-23 Score=210.85 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=153.3
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+++++. .+++||+++.++++++|..|. .+++|+++++|+.++++.++|++++|++++|++|..+.+++.+
T Consensus 39 ~~Al~~~----~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~ 109 (505)
T 3nyq_A 39 RPALRFG----ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109 (505)
T ss_dssp SEEEEET----TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHH
T ss_pred CeEEEEC----CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHH
Confidence 4566653 578999999999999988774 2789999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLV 347 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 347 (486)
+++.+++++++++++.. .......+..+. ....... .. ......++++++|+
T Consensus 110 il~~~~~~~vi~~~~~~------~~~~~~~~~~~~-~~~~~~~--------------~~-------~~~~~~~~d~a~i~ 161 (505)
T 3nyq_A 110 ILSDSAPSLVLAPPDAE------LPPALGALERVD-VDVRARG--------------AV-------PEDGADDGDPALVV 161 (505)
T ss_dssp HHHHHCCSEEEECTTCC------CCGGGTTSEEEE-CCTTCCC--------------CC-------CCCCCCTTSEEEEE
T ss_pred HHHHCCCCEEEECCccc------cchhhccccccc-ccccccc--------------CC-------CCCCCCCCCeEEEE
Confidence 99999999999986521 111122232221 1111000 00 01134578999999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|||||||.||||+++|+++..........+++ .++|++++.+|++|.+|+...++.++..|+++++.+.
T Consensus 162 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 230 (505)
T 3nyq_A 162 YTSGTTGPPKGAVIPRRALATTLDALADAWQW-TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230 (505)
T ss_dssp EECCSSSSCEEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSS
T ss_pred eCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCC-CCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 99999999999999999999999888888888 7889999999999999998889999999999998865
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.86 E-value=1.1e-21 Score=224.19 Aligned_cols=201 Identities=20% Similarity=0.228 Sum_probs=154.5
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+++++. .+++||+++.++++++|..|.+.|+++|++|+++++++.++++.++|++++|+.+||++|..+.+++.+
T Consensus 480 ~~Av~~~----~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~ 555 (1304)
T 2vsq_A 480 APALTYS----GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISY 555 (1304)
T ss_dssp SEEEESS----SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHH
T ss_pred CeEEEEC----CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHH
Confidence 3556653 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLV 347 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 347 (486)
+++.+++++++++.+.. ......+.....+..++.. .+ ...... ......++++|+|+
T Consensus 556 il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~----~~~~~~-------~~~~~~~~~~ayii 613 (1304)
T 2vsq_A 556 MLADSAAACLLTHQEMK-----EQAAELPYTGTTLFIDDQT------RF----EEQASD-------PATAIDPNDPAYIM 613 (1304)
T ss_dssp HHHHHTCCEEEECSTTC-----TTSTTCCCCSEEEESSCGG------GG----GSCSSC-------CCCCCCTTSEEEEE
T ss_pred HHHHcCCCEEEECcchh-----hhhhccCCCCcEEEecccc------cc----ccccCC-------CCCCCCCCCeEEEE
Confidence 99999999999986521 0111122222233322110 00 000000 01134578999999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|||||||+||||+++|+++.+. ......+++ .++++++...|++|..+ .+.++.++..|+++++.+.
T Consensus 614 yTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 614 YTSGTTGKPKGNITTHANIQGL-VKHVDYMAF-SDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp EECCSSSSCEEEEEEHHHHHHH-HSSCCSSCC-CTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCG
T ss_pred eCCCCCCCCCEEEEehHHHHHH-HHHHHhcCC-CCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECCh
Confidence 9999999999999999999864 322333455 67899999999988665 4688999999999999875
No 31
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.85 E-value=4.1e-20 Score=193.71 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=147.2
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+ +|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 53 ~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i 131 (562)
T 3ite_A 53 TEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAF 131 (562)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEE
Confidence 3679999999999999999998898 799999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++... ....+....++.. ....+.+......... .......+++++|+|||||||.|||
T Consensus 132 ~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~TSGTTG~PKg 192 (562)
T 3ite_A 132 VCDNNFD------GVELPPETKVLDT-------KNQSFIENLSTQDTSD------ILNNYPENLDAYLLYTSGSTGTPKG 192 (562)
T ss_dssp ECTTTTT------TCCCCTTCEEEET-------TCHHHHHHHHHSCCSC------CCCCCCTTSEEEEEEECC---CCEE
T ss_pred Ecccccc------ccccCccceeecc-------cchhhhhhcccccccc------cccCCCCCCcEEEEECCCCCCCCcE
Confidence 8765211 0011111112211 1112222222221111 0123456788999999999999999
Q ss_pred eEechHHHHHHHHHHHHHc--------cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYF--------KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~--------~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++..........+ .+ ...+++++..|++|..+. ..++.++..|+++++...
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~ 257 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLEL-GGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGER 257 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGC-TTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCH
T ss_pred EEECchhHHHHHHHHHhhhccccchhccc-CcCceEEEecCchhhhhH-HHHHHHHhcccEEEecch
Confidence 9999999988776655432 23 567899999999987765 567889999999998754
No 32
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.83 E-value=1.4e-21 Score=203.98 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=128.1
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCCCCcCccccccCCceEEEEC-CCCC--
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD-PDEE-- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d-~~~~-- 197 (486)
..+++++|.+++||+++++++.+++++ + ++.++++||+||+++.++.......+.+++|+|+|+++++|+| +++.
T Consensus 305 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 384 (548)
T 2d1s_A 305 KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL 384 (548)
T ss_dssp GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBC
T ss_pred cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccC
Confidence 345689999999999999999999988 7 7889999999999887766554456789999999999999999 4443
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.
T Consensus 385 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~--v~p~eIE~~ 459 (548)
T 2d1s_A 385 GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEG---WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQ--VPPAELESV 459 (548)
T ss_dssp CTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTCCEEEEEEGGGCBCBTTCC--BCHHHHHHH
T ss_pred CCCCCeEEEECCHHHhhhhcCChHHhhhcccCCc---EEEccCEEEEcCCCeEEEeccccceEEECCEE--ECHHHHHHH
Confidence 56888875 79999999999996666 99999999999999888888 67788888 577777777
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+..+.++.++..+++
T Consensus 460 l~~~p~V~~a~V~~~~~~ 477 (548)
T 2d1s_A 460 LLQHPSIFDAGVAGVPDP 477 (548)
T ss_dssp HHTSTTEEEEEEEEEEET
T ss_pred HHhCCCccEEEEEEEEcC
Confidence 776666666666666543
No 33
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.82 E-value=1.6e-21 Score=203.27 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=121.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCc-eEEEECCCCC---
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT-QTKIVDPDEE--- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~-~~~i~d~~~~--- 197 (486)
.++++||.+++||+++++++.+++++ +|++++++||+||++..++..... ....+++|+|+++. +++|+|+++.
T Consensus 295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~ 374 (539)
T 1mdb_A 295 DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374 (539)
T ss_dssp CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCC
T ss_pred CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCc
Confidence 45689999999999999999999987 899999999999965433321111 12457999999764 8999998765
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+
T Consensus 375 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l 449 (539)
T 1mdb_A 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG---FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEK--VAAEEVENHL 449 (539)
T ss_dssp TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEEGGGCEECSSCE--ECHHHHHHHH
T ss_pred CCCcceEEeeCcccchhhcCChhhhhhhccCCC---CeecCceEEECCCCcEEEeccccceEEECCEE--ECHHHHHHHH
Confidence 56888864 89999999999997677 99999999999999988888 67788888 5666666666
Q ss_pred HHhhhhCCceEEEEcC
Q psy2842 266 LHCLVTSDANICVVED 281 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~ 281 (486)
..+..+.++.++..++
T Consensus 450 ~~~p~V~~a~vv~~~~ 465 (539)
T 1mdb_A 450 LAHPAVHDAAMVSMPD 465 (539)
T ss_dssp TTSTTEEEEEEEEEEE
T ss_pred HhCCCcceEEEEeccc
Confidence 6666666666665554
No 34
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.82 E-value=2.7e-21 Score=202.05 Aligned_cols=161 Identities=23% Similarity=0.318 Sum_probs=106.0
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CCCc-eeccccccccccccccCCCCCCCcCccccccCCceEEEECCCC-C-
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDE-E- 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~-i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~-~- 197 (486)
...++++||.+++||+++++++.+++.+ ++.. ++++||+||+++.++.......+.+++|+|+|+++++|+|+++ .
T Consensus 302 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~ 381 (550)
T 3rix_A 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT 381 (550)
T ss_dssp GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCB
T ss_pred cccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcC
Confidence 3456789999999999999999999988 8876 9999999999988887777777889999999999999999643 2
Q ss_pred ----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHH
Q psy2842 198 ----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPE 263 (486)
Q Consensus 198 ----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~ 263 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+
T Consensus 382 ~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~ 456 (550)
T 3rix_A 382 LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG---WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQ--VAPAELES 456 (550)
T ss_dssp CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTCCEEEC-----------------------
T ss_pred CCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCC---CeecCcEEEEeCCceEEEEecchheeEECCEE--ECHHHHHH
Confidence 56888875 89999999999987677 99999999999999998888 78889998 79999999
Q ss_pred HHHHhhhhCCceEEEEcChhHHHH
Q psy2842 264 ACLHCLVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~~~~~~ 287 (486)
.+..+..+.++.++..+++...+.
T Consensus 457 ~l~~~p~V~~a~vv~~~~~~~g~~ 480 (550)
T 3rix_A 457 ILLQHPNIFDAGVAGLPDDDAGEL 480 (550)
T ss_dssp ------------------------
T ss_pred HHHhCCCcceEEEEEeecCCCCce
Confidence 999999999999998887654443
No 35
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.81 E-value=2.1e-21 Score=203.88 Aligned_cols=153 Identities=18% Similarity=0.288 Sum_probs=132.8
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
.++++||.+++||+++++++.++|.+ +|++++++||+||++..++..+....+++++|+|+|+++++|+|+++.
T Consensus 338 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g 417 (580)
T 3etc_A 338 YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVG 417 (580)
T ss_dssp -CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTT
T ss_pred CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCC
Confidence 45689999999999999999999988 799999999999998777666655668899999999999999998875
Q ss_pred Cccceehh-----------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 GNGEICLK-----------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 ~~gel~~~-----------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.|||+++ +|+++++.+++.|. +| |++|||++..+.++++.++| +++.+|.. |+|.+.|
T Consensus 418 ~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~g---wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~--I~p~eIE 491 (580)
T 3etc_A 418 EEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DG---YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYK--VGPFEVE 491 (580)
T ss_dssp CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TT---EEEEEEEEEECTTSCEEEEEESSSCEEETTEE--ECHHHHH
T ss_pred CceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CC---EEecCcEEEECCCCcEEEEecCCCEEEECCEE--ECHHHHH
Confidence 56888764 79999999999994 56 99999999999999999988 78889988 6888888
Q ss_pred HHHHHhhhhCCceEEEEcCh
Q psy2842 263 EACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~~ 282 (486)
..+..+..+.++.++..+++
T Consensus 492 ~~l~~~p~V~~a~Vvg~~~~ 511 (580)
T 3etc_A 492 SALIQHPAVLECAITGVPDP 511 (580)
T ss_dssp HHHTTSTTEEEEEEEEEEET
T ss_pred HHHHhCCCeeeEEEEeeecc
Confidence 88888888888888877765
No 36
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.78 E-value=2.5e-20 Score=194.12 Aligned_cols=155 Identities=23% Similarity=0.347 Sum_probs=130.6
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccC-----CCCCCCcCccccccCCceEEEECCC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVS-----APDDFKLDGVGRTIPGTQTKIVDPD 195 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~-----~~~~~~~~s~G~p~p~~~~~i~d~~ 195 (486)
..++++||.+++||+++++++.+++++ + ++.++++||+||+++.++.. .+...+++++|+|+|+++++|+|++
T Consensus 293 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 372 (536)
T 3ni2_A 293 KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPE 372 (536)
T ss_dssp GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTT
T ss_pred cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCC
Confidence 456689999999999999999999988 7 89999999999998765543 2234478999999999999999954
Q ss_pred -CC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 196 -EE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 196 -~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
+. +.||++++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.
T Consensus 373 ~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~ 447 (536)
T 3ni2_A 373 TGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEG---WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQ--VAPA 447 (536)
T ss_dssp TCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEECSCCEEETTEE--ECHH
T ss_pred CCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCC---ceEcccEEEEcCCceEEEEecccceEEECCEE--ECHH
Confidence 33 56888875 89999999999997667 99999999999999999988 77889988 6888
Q ss_pred CCHHHHHHhhhhCCceEEEEcCh
Q psy2842 260 NSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.|+.+..+..+.++.++..+++
T Consensus 448 eIE~~l~~~p~V~~a~Vv~~~~~ 470 (536)
T 3ni2_A 448 ELEALLIAHPEISDAAVVGLKDE 470 (536)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEET
T ss_pred HHHHHHHhCCCcceEEEEeeecC
Confidence 88888877777778877777654
No 37
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.77 E-value=4.5e-20 Score=190.66 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=130.2
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEEC-CCCC-----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD-PDEE----- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d-~~~~----- 197 (486)
.++++|.+++||+++++++.+.|.+ +|+.++++||+||++..++.........+++|+|+|+++++|+| +++.
T Consensus 266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g 345 (503)
T 4fuq_A 266 TTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRG 345 (503)
T ss_dssp TTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTT
T ss_pred chhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCC
Confidence 4589999999999999999999988 79999999999999877654444456789999999999999999 4443
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+..
T Consensus 346 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~ 420 (503)
T 4fuq_A 346 DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDG---FFITGDLGKIDERGYVHILGRGKDLVITGGFN--VYPKEIESEIDA 420 (503)
T ss_dssp CCEEEEEESTTSCCCBTTCHHHHHHTBCTTS---CEEEEEEEEECTTCEEEECCSSTTCEEETTEE--ECHHHHHHHHHT
T ss_pred CceEEEEECCchhhhhcCChhhhHhhhCCCC---CeEcceeEEEcCCCcEEEEecCCCEEEECCEE--ECHHHHHHHHHh
Confidence 56888875 89999999999997777 99999999999999998888 77889988 678888888877
Q ss_pred hhhhCCceEEEEcCh
Q psy2842 268 CLVTSDANICVVEDD 282 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~ 282 (486)
+..+.++.++.++++
T Consensus 421 ~p~V~~a~vv~~~~~ 435 (503)
T 4fuq_A 421 MPGVVESAVIGVPHA 435 (503)
T ss_dssp STTEEEEEEEEEEET
T ss_pred CCCeeEEEEEEeEch
Confidence 777778877777654
No 38
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.76 E-value=4.3e-20 Score=193.65 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=128.7
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
.++++||.+++||+++++++.++|++ +|++++++||+||++..++.......+.+++|+|+|+++++|+|+++.
T Consensus 319 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G 398 (570)
T 3c5e_A 319 YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPG 398 (570)
T ss_dssp CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTT
T ss_pred cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCC
Confidence 34589999999999999999999988 799999999999998776655444557899999999999999998765
Q ss_pred Cccceehh-----------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 GNGEICLK-----------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 ~~gel~~~-----------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.|||+++ ||+++++.+++.|. +| |++|||++..+.++.+.++| +++.+|.. |+|.+.|
T Consensus 399 ~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~---~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~--V~p~eIE 472 (570)
T 3c5e_A 399 TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GD---FWLLGDRGIKDEDGYFQFMGRADDIINSSGYR--IGPSEVE 472 (570)
T ss_dssp CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TT---EEEEEEEEEECTTSCEEEEEEGGGCEEETTEE--ECHHHHH
T ss_pred CCCeeEEeccCCCCchhhccccCChhHhhhhhc-CC---ccccceeEEEcCCceEEEEecCCCEEEECCEE--ECHHHHH
Confidence 56888774 89999999999884 45 99999999999999988888 67789988 6777777
Q ss_pred HHHHHhhhhCCceEEEEcCh
Q psy2842 263 EACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.+..+..+.++.++..+++
T Consensus 473 ~~l~~~p~V~~a~Vv~~~~~ 492 (570)
T 3c5e_A 473 NALMEHPAVVETAVISSPDP 492 (570)
T ss_dssp HHHHTSTTEEEEEEEEEEET
T ss_pred HHHHhCCCcceEEEEeeeCC
Confidence 77777777777777776654
No 39
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.76 E-value=2.5e-20 Score=194.37 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=121.8
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC-----------CCcCccccccCCceEEEE
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIV 192 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~-----------~~~~s~G~p~p~~~~~i~ 192 (486)
.++++||.+++||+++++++.++++.+|++++++||+||+++.++.+.... ...+++|+|+|+++++|+
T Consensus 290 ~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 369 (541)
T 1v25_A 290 HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA 369 (541)
T ss_dssp CCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEE
T ss_pred CcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEE
Confidence 456899999999999999999999668999999999999988776654321 135789999999999999
Q ss_pred CCCCC-------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeee
Q psy2842 193 DPDEE-------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAG 255 (486)
Q Consensus 193 d~~~~-------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vp 255 (486)
|+++. +.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|..
T Consensus 370 d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g---~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~-- 444 (541)
T 1v25_A 370 DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG---FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEW-- 444 (541)
T ss_dssp CTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTS---CEEEEEEEEECTTCCEEEEEESSCEEEETTEE--
T ss_pred CCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCC---CeEcCCEEEEcCCceEEEeecccceeeeCCEE--
Confidence 98764 35888875 89999999999986667 99999999999999998888 77789998
Q ss_pred cCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 256 MYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 256 i~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|+|.+.|+.+..+..+.++.++..+++
T Consensus 445 v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 471 (541)
T 1v25_A 445 ISSVDLENALMGHPKVKEAAVVAIPHP 471 (541)
T ss_dssp EEHHHHHCC----------CEEEEECS
T ss_pred ECHHHHHHHHHhCCCceEEEEEEecCC
Confidence 677777777777888888888877765
No 40
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.76 E-value=1.6e-19 Score=192.14 Aligned_cols=157 Identities=14% Similarity=0.214 Sum_probs=131.5
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++||.+++||+++++++.+++.+ +| ++++++||+||+++.++...+. ..+.+++|+|+||++++|+|+++
T Consensus 374 ~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g 453 (652)
T 1pg4_A 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG 453 (652)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTC
T ss_pred cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCC
Confidence 456799999999999999999999987 77 8999999999999877665543 34679999999999999999877
Q ss_pred C-----Cccceehh--------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 197 E-----GNGEICLK--------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 197 ~-----~~gel~~~--------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
. +.|||.++ +|+++++++++.+... ...|++|||++..+.++++.++| .++.+|.. |++.
T Consensus 454 ~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~-~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~r--I~~~ 530 (652)
T 1pg4_A 454 HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFST-FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR--LGTA 530 (652)
T ss_dssp CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSS-STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEE--EEHH
T ss_pred CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhc-CCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEE--ECHH
Confidence 5 45888765 6999999998877431 12399999999999999999998 78889988 6888
Q ss_pred CCHHHHHHhhhhCCceEEEEcCh
Q psy2842 260 NSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.|+.+..+..+.++.++..+++
T Consensus 531 eIE~~l~~~p~V~ea~Vvg~~~~ 553 (652)
T 1pg4_A 531 EIESALVAHPKIAEAAVVGIPHA 553 (652)
T ss_dssp HHHHHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHhCCCcceEEEEEEEcC
Confidence 88888888888888888877654
No 41
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.75 E-value=4.3e-20 Score=192.70 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=99.0
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCcccccc-CCceEEEECCCCC-----C
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTI-PGTQTKIVDPDEE-----G 198 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~-p~~~~~i~d~~~~-----~ 198 (486)
++||.+++||+++++++.+++++ +|++++++||+||++..++..... ....+++|+|+ ++++++|+|+++. +
T Consensus 307 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~ 386 (544)
T 3o83_A 307 QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGE 386 (544)
T ss_dssp TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTC
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCC
Confidence 78999999999999999999998 799999999999987554433222 12457899996 8999999998765 5
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||++++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.+..+
T Consensus 387 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~~ 461 (544)
T 3o83_A 387 IGMLATRGPYTFCGYYQSPEHNSQVFDEDN---YYYSGDLVQRTPDGNLRVVGRIKDQINRGGEK--IASEEIEKLILLH 461 (544)
T ss_dssp CEEEEEECTTSCSCCTTCHHHHHHHBCTTC---CEEEEEEEEECTTSCEEEEEEEC------------------------
T ss_pred eeEEEEecCCcchhhcCChhhhhhhCCCCC---CeEcCCEEEEcCCCCEEEEeecCCEEEeCCEE--ECHHHHHHHHHhC
Confidence 6888764 89999999999997777 99999999999999998888 88899998 7999999999999
Q ss_pred hhhCCceEEEEcChhHHHH
Q psy2842 269 LVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~ 287 (486)
..+.++.++.++++..++.
T Consensus 462 p~V~~a~vv~~~~~~~g~~ 480 (544)
T 3o83_A 462 PEVMHAALVAIVDEQFGEK 480 (544)
T ss_dssp -------------------
T ss_pred CCccEEEEEeccCCCCCce
Confidence 9999999998887654443
No 42
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.75 E-value=6.3e-19 Score=182.50 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=122.1
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-----CCCcCccccccCCceEEEECCCCC
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-----~~~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
.++++|.+++||+++++++.+++.+ + +++++++||+||+++.++..... .....++|+|+|+++++|+|+++.
T Consensus 258 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~ 337 (511)
T 3e7w_A 258 LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ 337 (511)
T ss_dssp TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSC
T ss_pred cCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCC
Confidence 4589999999999999999999988 7 89999999999998776643321 235678999999999999998865
Q ss_pred -----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 -----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 -----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.|||.++ ||+++++.+++.|...+-..|++|||++.. .++.+.++| +++.+|.. |+|.+.|
T Consensus 338 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~--v~p~eIE 414 (511)
T 3e7w_A 338 PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYR--MELEEIE 414 (511)
T ss_dssp BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEE--EEHHHHH
T ss_pred CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEE--eCHHHHH
Confidence 56898875 899999999999854332446999999998 588888888 77788888 5666666
Q ss_pred HHHHHhhhhCCceEEEEcC
Q psy2842 263 EACLHCLVTSDANICVVED 281 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~ 281 (486)
+.+..+..+.++.++..++
T Consensus 415 ~~l~~~p~V~~a~vv~~~~ 433 (511)
T 3e7w_A 415 FHVRQSQYVRSAVVIPYQP 433 (511)
T ss_dssp HHHHHSTTEEEEEEEEECS
T ss_pred HHHHhCCCcceEEEEEEcC
Confidence 6666666666666655543
No 43
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.74 E-value=3.8e-19 Score=198.07 Aligned_cols=163 Identities=24% Similarity=0.323 Sum_probs=103.7
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCC-----CCCCCcCccccccCCceEEEECC
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSA-----PDDFKLDGVGRTIPGTQTKIVDP 194 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~-----~~~~~~~s~G~p~p~~~~~i~d~ 194 (486)
...++++||.+++||+++++++.+++++ + +++++++||+||+++.++... +...+.+++|+|+|+++++|+|+
T Consensus 339 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 418 (979)
T 3tsy_A 339 EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDP 418 (979)
T ss_dssp GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECT
T ss_pred cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeC
Confidence 3456799999999999999999999988 7 899999999999987665431 22346789999999999999995
Q ss_pred C-CC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCC
Q psy2842 195 D-EE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYT 258 (486)
Q Consensus 195 ~-~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~ 258 (486)
+ +. +.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|
T Consensus 419 ~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~~ 493 (979)
T 3tsy_A 419 DTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG---WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQ--VAP 493 (979)
T ss_dssp TSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEESCC-------------
T ss_pred CCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCC---cEEcCCEEEEcCCceEEEecCCCCEEEECCEE--ECH
Confidence 5 33 56888875 89999999999997777 99999999999999998888 88889998 799
Q ss_pred CCCHHHHHHhhhhCCceEEEEcChhHHHHHH
Q psy2842 259 TNSPEACLHCLVTSDANICVVEDDKQLEKIL 289 (486)
Q Consensus 259 ~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~ 289 (486)
.+.|..+..+..+.++.++..+++...+.+.
T Consensus 494 ~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~ 524 (979)
T 3tsy_A 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPV 524 (979)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHhCCCcceEEEEEecccCCCcEEE
Confidence 9999999999999999888877664444433
No 44
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.74 E-value=1.8e-19 Score=189.00 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=100.0
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC----CCCcCccccccCCceEEEECCCCC---
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~----~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
++||.+++||+++++++.+.+.+ + ++.++++||+||+++.++..... .....++|+|+|+++++|+|+++.
T Consensus 326 ~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~ 405 (570)
T 4gr5_A 326 EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAA 405 (570)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCC
T ss_pred CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCC
Confidence 78999999999999999888887 5 89999999999998776654321 234567999999999999998765
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCC-----cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGL-----ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~-----~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+.|||+++ ||+++++.+++.|..+.+ ..|++|||++..+.++++.++| +++.+|.. |+|.+
T Consensus 406 ~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~--v~p~e 483 (570)
T 4gr5_A 406 NGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFR--VEPGE 483 (570)
T ss_dssp TTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------
T ss_pred CCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEE--eCHHH
Confidence 56888875 799999999999965532 2489999999999999998888 78889999 79999
Q ss_pred CHHHHHHhhhhCCceEEEEcChhHHH
Q psy2842 261 SPEACLHCLVTSDANICVVEDDKQLE 286 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~~~~~~~ 286 (486)
.|+.+..+..+.++.++..+++...+
T Consensus 484 IE~~l~~~p~V~~a~Vv~~~~~~~~~ 509 (570)
T 4gr5_A 484 VEARLVGHPAVRQAAVLAQDSRLGDK 509 (570)
T ss_dssp --------------------------
T ss_pred HHHHHhcCCCcceEEEEEeeCCCCCe
Confidence 99999999999999988887664433
No 45
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.73 E-value=1.2e-19 Score=187.53 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=125.4
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC--------
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-------- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-------- 197 (486)
+++|.+++||+++++++.+++.+ +|+++++.||+||++..++.........+++|+|+|+++++|+|+++.
T Consensus 272 ~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g 351 (505)
T 3nyq_A 272 AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGE 351 (505)
T ss_dssp HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSC
T ss_pred ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCC
Confidence 67899999999999999999988 799999999999998877766666667899999999999999998653
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH-----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG-----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g-----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.+.
T Consensus 352 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~--v~~~eIE~~l~ 426 (505)
T 3nyq_A 352 SVGEIQVRGPNLFTEYLNRPDATAAAFTEDG---FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK--IGAGEIENALL 426 (505)
T ss_dssp CCEEEEEESTTSCCEETTCHHHHHHTBCTTS---CEEEEEEEEECTTSCEEEEEESSCCCEEETTEE--ECHHHHHHHHT
T ss_pred ceEEEEEecCchhhhhCCChhHhhhhhcCCC---CCccCCeEEECCCccEEEeCCccCceEEeCCEE--ECHHHHHHHHH
Confidence 45888874 89999999999997777 99999999999999888877 56788888 57777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 427 ~~p~V~~a~Vv~~~~~ 442 (505)
T 3nyq_A 427 EHPEVREAAVTGEPDP 442 (505)
T ss_dssp TSTTEEEEEEEEEEET
T ss_pred HCcCccEEEEEeeECC
Confidence 7777777777776654
No 46
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.73 E-value=1.9e-19 Score=186.61 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=130.0
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
..+++++|.+++||+++++++.+++.+.|++++++||+||+++.++..... ..+.+++|+|+++++++|+|+++.
T Consensus 280 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 359 (517)
T 3r44_A 280 ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRE 359 (517)
T ss_dssp HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEES
T ss_pred cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCC
Confidence 345689999999999999999999998899999999999998876655433 346799999999999999998765
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||++++ ||+++++.+++.| .+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+.
T Consensus 360 ~g~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~ 433 (517)
T 3r44_A 360 HGEGEVVIKSDILLKEYWNRPEATRDAF-DNG---WFRTGDIGEIDDEGYLYIKDRLKDMIISGGEN--VYPAEIESVII 433 (517)
T ss_dssp SEEEEEEEEETTSCSEETTCHHHHHHTE-ETT---EEEEEEEEEECTTSCEEEEECGGGCEEETTEE--ECHHHHHHHHT
T ss_pred CCCeEEEEeCcchhhhhCCChhhhHhhh-cCC---CEecceeEEEcCCeeEEEecCCcCEEEECCEE--ECHHHHHHHHH
Confidence 35888875 8999999999998 456 99999999999999998888 77789998 67777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 434 ~~p~V~~~~Vv~~~~~ 449 (517)
T 3r44_A 434 GVPGVSEVAVIGLPDE 449 (517)
T ss_dssp TSTTEEEEEEEEEEET
T ss_pred hCCCEeEEEEEecccc
Confidence 7777777777776654
No 47
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.72 E-value=6.5e-19 Score=187.73 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=125.8
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCC---CCCCcCccccccCCceEEEECC-
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAP---DDFKLDGVGRTIPGTQTKIVDP- 194 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~---~~~~~~s~G~p~p~~~~~i~d~- 194 (486)
.+++++||.+++||+|+++++.+++.+ +| ++++++||+||+++.++...+ ...+++++|+|+||++++|+|+
T Consensus 380 ~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~ 459 (663)
T 1ry2_A 380 NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPN 459 (663)
T ss_dssp SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSS
T ss_pred cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCC
Confidence 456799999999999999999999997 77 899999999999877666543 2347899999999999999998
Q ss_pred CCC------Cccceehh--------hhHhhHHHHHHHHHH--cCCcccceEEEEeecCCchhhhhHH----HhHcCCeee
Q psy2842 195 DEE------GNGEICLK--------EYEANVRTVAKAFLK--LGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAA 254 (486)
Q Consensus 195 ~~~------~~gel~~~--------~y~~~~~~~a~~l~~--~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~v 254 (486)
++. +.||+.++ +||++++++++.+.. .| |+++||++..+.++.+.++| +++.+|..
T Consensus 460 ~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g---~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~r- 535 (663)
T 1ry2_A 460 TGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG---YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHR- 535 (663)
T ss_dssp STTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT---SEEEEEEEEECTTCCEEECSCTTSCBCSSSCC-
T ss_pred CCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC---EEEcCCEEEEcCCCCEEEEeecCCEEEECCEE-
Confidence 543 35787654 799999999888743 35 99999999999999998888 77788888
Q ss_pred ecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 255 GMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 255 pi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|++.+.|+.+..+..+.++.++..+++
T Consensus 536 -I~~~eIE~~l~~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 536 -LSTAEIEAAIIEDPIVAECAVVGFNDD 562 (663)
T ss_dssp -BCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred -cCHHHHHHHHHhCCCcceEEEEEEecC
Confidence 577777777766666666666665543
No 48
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.72 E-value=6e-19 Score=182.33 Aligned_cols=150 Identities=16% Similarity=0.138 Sum_probs=124.4
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCC---C--
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDE---E-- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~---~-- 197 (486)
.++++||.+++||+++++++.+++++ ++..++++||+||++... ... ..+.+++|+|.++++++++|+++ .
T Consensus 269 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~-~~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~ 345 (504)
T 1t5h_X 269 LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSL-YMR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIV 345 (504)
T ss_dssp CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEE-EEE--SCSSSSEEBCCTTCCEEEECTTSCTTCBC
T ss_pred ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccc-ccc--CCCCCccccCCCCCceeEEeccCCCCCcC
Confidence 45689999999999999999999998 799999999999994322 211 34678999999999999999876 2
Q ss_pred ---Cccceehh-------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHH
Q psy2842 198 ---GNGEICLK-------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPE 263 (486)
Q Consensus 198 ---~~gel~~~-------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~ 263 (486)
+.||+.++ ||+++++.+++.| .+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+
T Consensus 346 ~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g---~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~ 419 (504)
T 1t5h_X 346 ANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDG---WYRTSDVAVWTPEGTVRILGRVDDMIISGGEN--IHPSEIER 419 (504)
T ss_dssp CTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETT---EEEEEEEEEECTTSCEEEEEEGGGCEEETTEE--ECHHHHHH
T ss_pred CCCCcceEEEeCCceeeceecCCchhhhhhh-cCC---ccccCcEEEECCCceEEEeCcccCEEEECCEE--ECHHHHHH
Confidence 56888775 8999999999999 456 99999999999999988888 67789998 57777777
Q ss_pred HHHHhhhhCCceEEEEcCh
Q psy2842 264 ACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~ 282 (486)
.+..+..+.++.++..+++
T Consensus 420 ~l~~~p~V~~a~Vv~~~~~ 438 (504)
T 1t5h_X 420 VLGTAPGVTEVVVIGLADQ 438 (504)
T ss_dssp HHTTSTTEEEEEEEEEECS
T ss_pred HHHhCCCcceEEEEEeecC
Confidence 7777777777777777654
No 49
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.71 E-value=2.2e-19 Score=187.50 Aligned_cols=194 Identities=16% Similarity=0.210 Sum_probs=146.9
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
..++..+++.+.. ++|++.++|.+++.+.+..
T Consensus 254 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------------------------- 286 (549)
T 3g7s_A 254 MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTL----------------------------------------------- 286 (549)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH-----------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhh-----------------------------------------------
Confidence 3355666677777 9999999999998887653
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-----CC---CceeccccccccccccccCC
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-----LD---IPICEVFGMSECAGAHTVSA 171 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-----~g---~~i~~~yG~TE~~~~~~~~~ 171 (486)
.......+++++|.+++||+++++++.+++.+ +| +.++++||+||+++.++.+.
T Consensus 287 ------------------~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 348 (549)
T 3g7s_A 287 ------------------ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNP 348 (549)
T ss_dssp ------------------HHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECC
T ss_pred ------------------hhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCC
Confidence 00012245689999999999999999998876 46 88999999999998877665
Q ss_pred CCC-CCcCccccccCCceEEEEC-CCCC-----Cccceehh------hhHhhHHHHHHHHH--HcCCcccceEEEEeecC
Q psy2842 172 PDD-FKLDGVGRTIPGTQTKIVD-PDEE-----GNGEICLK------EYEANVRTVAKAFL--KLGLERYHSVCIIGFNA 236 (486)
Q Consensus 172 ~~~-~~~~s~G~p~p~~~~~i~d-~~~~-----~~gel~~~------~y~~~~~~~a~~l~--~~g~~~~~~vg~~~~~~ 236 (486)
... .+.+++|+|+|+++++|+| +++. +.|||+++ ||+++++.+++.|. .+| .+|++|||++..+
T Consensus 349 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g-~~~~~TGDl~~~~ 427 (549)
T 3g7s_A 349 PLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG-RKFFRTGDVGFID 427 (549)
T ss_dssp GGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTC-CEEEEEEEEEEEC
T ss_pred ccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCC-CceEccCcEEEEc
Confidence 443 4678999999999999999 5544 57888875 89999999988873 223 4589999999999
Q ss_pred CchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 237 PEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 237 ~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.++.+.++| .++.+|.. |+|.+.|+.+..+..+.++.++..+++
T Consensus 428 ~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 428 EEGFLHFQDRVKEVIKYKGYT--IAPFELEALLMKHEAVMDVAVIGKPDE 475 (549)
T ss_dssp TTSCEEEEEEC--------------CHHHHHHHTTSTTEEEEEEECCCC-
T ss_pred CCceEEEeccccceEEECCEE--ECHHHHHHHHHhCCCeeeEEEEeeEcc
Confidence 999998888 78889988 788888888888888888888877765
No 50
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.70 E-value=1.2e-18 Score=181.20 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=120.0
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----Ccc
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----GNG 200 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~~g 200 (486)
.++|.+++||+++++++.+++++ +|++++++||+||+++.++.+.......+++|+|+|+++++|+|+++. +.|
T Consensus 300 ~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~G 379 (529)
T 2v7b_A 300 VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVG 379 (529)
T ss_dssp CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCcc
Confidence 47999999999999999999998 799999999999997766665555567899999999999999998765 568
Q ss_pred ceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhh
Q psy2842 201 EICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLV 270 (486)
Q Consensus 201 el~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~ 270 (486)
||+++ +|+++++.+++.|. +| |.++||++..+.++.+.++| .++.+|.. |+|.+.|+.+..+..
T Consensus 380 El~v~g~~~~~gY~~~~~~t~~~f~-~~---~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~~p~ 453 (529)
T 2v7b_A 380 DLYIKGPSAAVMYWNNREKSRATFL-GE---WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQY--VSPVEVEMVLVQHDA 453 (529)
T ss_dssp EEEEECTTCCCCBTTCHHHHHHHEE-TT---EEEEEEEEEECTTSCEEEEEEGGGCBC----C--BCHHHHHHHHTTSTT
T ss_pred EEEEecCCcccccCCChHHHHHhhh-cC---CcccCceEEECCCccEEEeCccCCeEEECCEE--ECHHHHHHHHHhCCC
Confidence 88875 79999999999884 45 99999999999999888888 67778887 577767777666666
Q ss_pred hCCceEEEE
Q psy2842 271 TSDANICVV 279 (486)
Q Consensus 271 ~~~~~vvi~ 279 (486)
+.++.++..
T Consensus 454 V~~~~vv~~ 462 (529)
T 2v7b_A 454 VLEAAVVGV 462 (529)
T ss_dssp EEEEEEEEE
T ss_pred cceEEEEEe
Confidence 666666666
No 51
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.70 E-value=1.6e-17 Score=174.58 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=118.9
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-C------CCceeccccccccccccccCCCCCC-------------------
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-L------DIPICEVFGMSECAGAHTVSAPDDF------------------- 175 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~------g~~i~~~yG~TE~~~~~~~~~~~~~------------------- 175 (486)
...+++++|.+++||+++++++.++|.+ + +..++++||+||++..++.......
T Consensus 294 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (576)
T 3gqw_A 294 AELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVA 373 (576)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCC
T ss_pred ccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccc
Confidence 3456799999999999999999999887 5 6789999999999887765432210
Q ss_pred ---------CcCccccccCCceEEEECCCCC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeec
Q psy2842 176 ---------KLDGVGRTIPGTQTKIVDPDEE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFN 235 (486)
Q Consensus 176 ---------~~~s~G~p~p~~~~~i~d~~~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~ 235 (486)
...++|+|+|+++++|+|+++. +.|||+++ ||+++++.++..+ .+| |++|||++..
T Consensus 374 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g---~~~TGDl~~~ 449 (576)
T 3gqw_A 374 PGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATG---WLDTGDLGYL 449 (576)
T ss_dssp CCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHS---CEEEEEEEEE
T ss_pred cCccccCccceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCC---eeeccceEEE
Confidence 1238999999999999998775 46888874 8999998887765 567 9999999998
Q ss_pred CCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEc
Q psy2842 236 APEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 236 ~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~ 280 (486)
.++.+.++| +++.+|.. |+|.+.|+.+..+..+.++.++...
T Consensus 450 -~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~~p~V~~~~vv~~~ 495 (576)
T 3gqw_A 450 -LDGYLYVTGRIKDLIIIRGRN--IWPQDIEYIAEQEPEIHSGDAIAFV 495 (576)
T ss_dssp -ETTEEEEEEETTTCEEETTEE--ECHHHHHHHHTTSSSCCTTSEEEEE
T ss_pred -ECCEEEEEecCcceEEECCEE--ECHHHHHHHHHhCcccccccEEEEE
Confidence 688888888 77788888 5666666666666655555555443
No 52
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.69 E-value=3.9e-17 Score=160.93 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=106.5
Q ss_pred CCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCCccceehh
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 205 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~ 205 (486)
+++||.+++||+++++++.++++++|++++++||+||+++.++.+..+....+++|.|.||+++.+.+ .||++.+
T Consensus 147 l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~-----~Gel~~~ 221 (358)
T 4gs5_A 147 VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE-----RGCLHIS 221 (358)
T ss_dssp GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT-----TSEEEEE
T ss_pred CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccceeeccCCCeEEEecC-----cCceEEe
Confidence 37899999999999999999999999999999999999998888877777889999999999999866 6999998
Q ss_pred hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH---hhhhCCceEE
Q psy2842 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH---CLVTSDANIC 277 (486)
Q Consensus 206 ~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~---~~~~~~~~vv 277 (486)
++.. .+| |++|||++..+.+++. ++| +++.+|.. |+|.+.|+.+.. +..+.++.++
T Consensus 222 g~~~----------~~g---~~~TGDlg~~d~~g~~-~~GR~dd~Ik~~G~~--v~p~eIE~~l~~~~~~p~V~~a~vv 284 (358)
T 4gs5_A 222 GAVT----------NGQ---TVQTNDLVEIHGNAFQ-WIGRADNVINSGGVK--IVLDQIDQRIAAVFHHLNIGNAFFC 284 (358)
T ss_dssp SGGG----------TTC---CEEEEEEEEECSSEEE-EEEEGGGEEEETTEE--EEHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred cccc----------cCc---ceecCCccccccCceE-EcccccCeEEECCEE--ECHHHHHHHHHHhccCCCccEEEEE
Confidence 8643 345 8999999999999854 457 77788888 566666655433 3344555444
No 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.68 E-value=2.3e-18 Score=178.32 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=127.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-----CCCcCccccccCCceEEEECCCC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-----~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++|.+++||+++++++.+++.+ + +++++++||+||+++.++..... ....+++|+|.++++++|+|+++
T Consensus 258 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g 337 (512)
T 3fce_A 258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337 (512)
T ss_dssp TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSS
T ss_pred hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCC
Confidence 34589999999999999999999988 7 89999999999998776654332 23567899999999999999876
Q ss_pred C-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
. +.||+.++ ||+++++.+++.|....-..|++|||++.. .++.+.+.| +++.+|.. |+|.+.
T Consensus 338 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~--v~p~eI 414 (512)
T 3fce_A 338 TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYR--MELEEI 414 (512)
T ss_dssp CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEE--ECHHHH
T ss_pred CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEE--ECHHHH
Confidence 5 57888875 899999999999842211348999999998 788888887 77789988 688888
Q ss_pred HHHHHHhhhhCCceEEEEcCh
Q psy2842 262 PEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|+.+..+..+.++.++.++++
T Consensus 415 E~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 415 EHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp HHHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHhCCCcceEEEEEEecC
Confidence 888888887878777766544
No 54
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.68 E-value=1.5e-18 Score=180.22 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=116.5
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-----CCCcCccccccCCceEEEECCCC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-----~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++|.+++||+++++++.+.+.+ + +++++++||+||+++.++..... ....+++|+|+|+++++|+|+++
T Consensus 261 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g 340 (521)
T 3l8c_A 261 AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDG 340 (521)
T ss_dssp TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTS
T ss_pred ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCc
Confidence 34589999999999999999999887 6 89999999999998776653322 23567899999999999999887
Q ss_pred C-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
. +.|||+++ ||+++++.+++.|....-..|++|||++..+.++++.+.| +++.+|.. |+|.+.
T Consensus 341 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~--v~p~eI 418 (521)
T 3l8c_A 341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYR--IELEDV 418 (521)
T ss_dssp CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-------CBHHHH
T ss_pred CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEE--eCHHHH
Confidence 5 56888875 7999999999998432223489999999999999988888 67778877 566666
Q ss_pred HHHHHHhhhhCCceEEEE
Q psy2842 262 PEACLHCLVTSDANICVV 279 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~ 279 (486)
|+.+..+..+.++.++..
T Consensus 419 E~~l~~~p~V~~a~vv~~ 436 (521)
T 3l8c_A 419 SQQLNQSPMVASAVAVPR 436 (521)
T ss_dssp HHHHHTSTTEEEEEEECC
T ss_pred HHHHHcCCCcceEEEEEe
Confidence 665555555555544443
No 55
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.67 E-value=3.7e-18 Score=180.34 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=126.8
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC----CCCcCccccccCCceEEEECCCCC--
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~----~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
+++||.+++||+++++++.+.+.+ + ++.++++||+||++..++..... ....+++|+|+++++++|+|+++.
T Consensus 275 l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~ 354 (620)
T 4dg8_A 275 LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEI 354 (620)
T ss_dssp GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBC
T ss_pred CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCC
Confidence 378999999999999988887765 4 89999999999998776543222 235678999999999999998765
Q ss_pred ----Cccceehh------hhHhhHHHHHHHHHHcCC----cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 198 ----GNGEICLK------EYEANVRTVAKAFLKLGL----ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 198 ----~~gel~~~------~y~~~~~~~a~~l~~~g~----~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
+.||++++ ||+++++.+++.|..++. ..|++|||++..+.++.+.++| .++.+|.. |+|.
T Consensus 355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~r--i~~~ 432 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYR--LDLP 432 (620)
T ss_dssp CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEE--EEHH
T ss_pred CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEE--cCHH
Confidence 45899874 899999999999976432 1579999999999999999998 78889998 6888
Q ss_pred CCHHHHHHhhhhCCceEEEEcC
Q psy2842 260 NSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
+.|..+..+..+.++.+++.++
T Consensus 433 eIE~~l~~~p~V~~a~Vv~~~~ 454 (620)
T 4dg8_A 433 ALEQRFRRQPGILDCALLVRER 454 (620)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE
T ss_pred HHHHHHHhCCCccEEEEEEEeC
Confidence 8888888888888887776654
No 56
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.66 E-value=1.2e-18 Score=180.05 Aligned_cols=148 Identities=26% Similarity=0.347 Sum_probs=122.7
Q ss_pred ceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCCCccceehh
Q psy2842 128 RCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 205 (486)
Q Consensus 128 ~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~ 205 (486)
++|.+++||+++++++.+++.++|++++++||+||+++.++...+. ..+.+++|+|+++++++|+|++.++.||++++
T Consensus 275 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~ 354 (501)
T 3ipl_A 275 NLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIK 354 (501)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEE
T ss_pred cccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEe
Confidence 7999999999999999999999999999999999998765544332 23678999999999999999876677998864
Q ss_pred ------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCce
Q psy2842 206 ------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDAN 275 (486)
Q Consensus 206 ------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~ 275 (486)
||+++++.++. + .+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+..+..+.++.
T Consensus 355 g~~~~~gY~~~~~~t~~-~-~~g---~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~--v~p~eiE~~l~~~p~V~~~~ 427 (501)
T 3ipl_A 355 GANVMNGYLYPTDLTGT-F-ENG---YFNTGDIAEIDHEGYVMIYDRRKDLIISGGEN--IYPYQIETVAKQFPGISDAV 427 (501)
T ss_dssp STTSCSCCSBSTTCCCS-E-ETT---EEEEEEEEEECTTSCEEEEEECCCCEECSSCE--ECHHHHHHHHTTSTTEEEEE
T ss_pred ccchhhhhCcChhhcch-h-cCC---ceecCCEEEEcCCCeEEEEccccceEEECCEE--ECHHHHHHHHHhCCCccEEE
Confidence 89999887766 4 445 99999999999999998888 77788888 57777777777777777777
Q ss_pred EEEEcCh
Q psy2842 276 ICVVEDD 282 (486)
Q Consensus 276 vvi~~~~ 282 (486)
++..+++
T Consensus 428 vv~~~~~ 434 (501)
T 3ipl_A 428 CVGHPDD 434 (501)
T ss_dssp EEEEEET
T ss_pred EEEEecc
Confidence 7766654
No 57
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.66 E-value=2.9e-18 Score=179.45 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=126.7
Q ss_pred CCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC---CCcCccccccCCceEEEECCCCC-----
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~---~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
++++|.+++||+++++++.++|.+. ++++++||+||++..++...... ...+++|+|+|+++++|+|+++.
T Consensus 292 ~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g 370 (563)
T 1amu_A 292 ILSIQTLITAGSATSPSLVNKWKEK-VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVG 370 (563)
T ss_dssp CCSCSEEEEESSCCCHHHHHHHTTT-SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTT
T ss_pred cccccEEEEEEecCCHHHHHHHHhC-CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCC
Confidence 4789999999999999999999874 78999999999987665543222 25678999999999999998765
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCC---cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGL---ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~---~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.|||+++ ||+++++.+++.|....+ ..|++|||++..+.++.+.++| +++.+|.. |+|.+.|+.
T Consensus 371 ~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~--V~p~eIE~~ 448 (563)
T 1amu_A 371 EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHR--VELEEVESI 448 (563)
T ss_dssp CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEE--EEHHHHHHH
T ss_pred CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEE--eCHHHHHHH
Confidence 56888875 899999999999964322 3489999999999999998888 67789998 677888888
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+..+.++.++..+++
T Consensus 449 l~~~p~V~~a~Vv~~~~~ 466 (563)
T 1amu_A 449 LLKHMYISETAVSVHKDH 466 (563)
T ss_dssp HTTSTTEEEEEEEEEECT
T ss_pred HHhCCCcceEEEEEeecC
Confidence 888877888888777664
No 58
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.64 E-value=1.4e-17 Score=172.29 Aligned_cols=152 Identities=25% Similarity=0.306 Sum_probs=94.2
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----C
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
++++|.+++||++ ++.+.+.+ + ++.++++||+||+++.++.....+ ...++|+|+++++++|+|+++. +
T Consensus 271 l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d~~~~~~~~g~ 346 (509)
T 3ivr_A 271 LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVDAEDRPLPPGE 346 (509)
T ss_dssp GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEECTTSCBCCTTC
T ss_pred hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEEEEECCCCCCCCCCC
Confidence 3789999999998 77777777 6 999999999999998766554322 3456999999999999998875 5
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH------HhHcCCeeeecCCCCCHHHHH
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG------AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g------~~~~gg~~vpi~~~~~~~~l~ 266 (486)
.||++++ ||+++++.+++.|. +| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.+.
T Consensus 347 ~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g---~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~--v~p~eiE~~l~ 420 (509)
T 3ivr_A 347 VGEIVLRGPTVFKGYWNNAAATQHAFR-NG---WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGEN--VYPAEVEGALK 420 (509)
T ss_dssp CEEEEEESTTSCCEETTCHHHHHHHTG-GG---SEEEEEEEEECTTSCEEEEEEC-------------------------
T ss_pred ceEEEEecCCccccccCCHHHhHHHhh-cC---CcccccEEEECCCceEEEeCCCCcceeEEECCEE--ECHHHHHHHHH
Confidence 6888875 89999999999995 55 99999999999999887777 37788988 79999999999
Q ss_pred HhhhhCCceEEEEcChhHHHH
Q psy2842 267 HCLVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~~~~~~ 287 (486)
.+..+.++.++..+++...+.
T Consensus 421 ~~p~V~~a~vv~~~~~~~~~~ 441 (509)
T 3ivr_A 421 QHPAIADAVVIGVPDPQWSEA 441 (509)
T ss_dssp ---------------------
T ss_pred hCCCceeEEEEeccccccCcE
Confidence 999999999998887654443
No 59
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.62 E-value=1.6e-17 Score=175.83 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=125.9
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCcccccc-CCceEEEECCCCC----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTI-PGTQTKIVDPDEE---- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~-p~~~~~i~d~~~~---- 197 (486)
++++||.+++||+++++++.+++.+ +|+.+++.||+||++..++..... .....++|+|+ ++.+++|+|+++.
T Consensus 300 ~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~ 379 (617)
T 3rg2_A 300 QLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQ 379 (617)
T ss_dssp TTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCT
T ss_pred cCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCC
Confidence 4589999999999999999999988 799999999999987654432221 12346899997 7889999998776
Q ss_pred -Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||+++ +||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|..+.
T Consensus 380 G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~---~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~r--i~~~eIE~~l~ 454 (617)
T 3rg2_A 380 GEVGRLMTRGPYTFRGYYKSPQHNASAFDANG---FYCSGDLISIDPEGYITVQGREKDQINRGGEK--IAAEEIENLLL 454 (617)
T ss_dssp TCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEECSSEEEETTEE--EEHHHHHHHHT
T ss_pred CCceEEEecCccccchhcCChhhhhhccCCCC---ceecCceEEEcCCceEEEEeecCCEEEECCEE--eCHHHHHHHHH
Confidence 5688876 499999999999997777 89999999999999999988 77789988 67777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 455 ~~p~V~~a~vv~~~~~ 470 (617)
T 3rg2_A 455 RHPAVIYAALVSMEDE 470 (617)
T ss_dssp TSTTEEEEEEEEEEET
T ss_pred hCCCeeEEEEEeccCc
Confidence 7777777777766543
No 60
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.61 E-value=7.5e-17 Score=168.86 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=97.8
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCC-CCCCcCccccccCCceEEEECCCCC-----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~-~~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
++++||.+++||+++++++.++|++ +++.++++||+||++..++.... .....+++|+|+++++++|+|+++.
T Consensus 292 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 292 DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 4589999999999999999999998 69999999999999876665443 3346789999999999999997543
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.|||+++ ||+++++.++..+. +| ..|++|||++..+.++++.++| +++.+|.. |+|.+.|+.+.
T Consensus 372 g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g-~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~--v~p~eIE~~l~ 447 (562)
T 3ite_A 372 GMAGELVIEGSLVANGYLNRPDAKGFCDI-NG-RKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQR--LELGEVSEVIR 447 (562)
T ss_dssp TSCEEEEEESTTSCCEESSCTTCCSEEEE-TT-EEEEEEEEEEEECTTSCEEEEEEC-----------------------
T ss_pred CCceEEEEeccccchhhCCCccccccccC-CC-CEEEecCCEEEEcCCCeEEEEccccCEEeECcEE--ECHHHHHHHHH
Confidence 46888875 89999886653321 22 3489999999999999998888 88889999 79999988887
Q ss_pred Hh-hhhCCceEEEEcCh
Q psy2842 267 HC-LVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~-~~~~~~~vvi~~~~ 282 (486)
.+ ....++.+++.+++
T Consensus 448 ~~~~~~~~~~v~~~~~~ 464 (562)
T 3ite_A 448 SLSPTDIDVVTLLLNHP 464 (562)
T ss_dssp -----------------
T ss_pred hcCCCceeEEEEEecCC
Confidence 77 44445555555554
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.60 E-value=4.6e-17 Score=171.52 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=119.8
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-C------CCceeccccccccccccccCCCC---------------------
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-L------DIPICEVFGMSECAGAHTVSAPD--------------------- 173 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~------g~~i~~~yG~TE~~~~~~~~~~~--------------------- 173 (486)
...++++||.+++||+++++++.++|.+ + +..++++||+||+++.++...+.
T Consensus 284 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (590)
T 3kxw_A 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFA 363 (590)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBC
T ss_pred cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeec
Confidence 4567799999999999999999999887 5 24699999999999877654321
Q ss_pred ------CCCcCccccccCCceEEEECCCCC------Cccceehh------hhHhhHHHHHHHHHHcC-----CcccceEE
Q psy2842 174 ------DFKLDGVGRTIPGTQTKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLKLG-----LERYHSVC 230 (486)
Q Consensus 174 ------~~~~~s~G~p~p~~~~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~~g-----~~~~~~vg 230 (486)
....+++|+|+++ ++|+|+++. +.|||+++ ||+++++.+++.|...- -..|++||
T Consensus 364 ~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TG 441 (590)
T 3kxw_A 364 DDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441 (590)
T ss_dssp CTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEE
T ss_pred cCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecC
Confidence 1245789999998 888997732 56888875 89999999999995421 12389999
Q ss_pred EEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH-HHhhhhC--CceEEEEcCh
Q psy2842 231 IIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC-LHCLVTS--DANICVVEDD 282 (486)
Q Consensus 231 ~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l-~~~~~~~--~~~vvi~~~~ 282 (486)
|++..+ ++.+.++| +++.+|.. |+|.+.|..+ ..+..+. ++.++.++++
T Consensus 442 Dlg~~d-dG~l~~~GR~dd~Ik~~G~~--v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 442 DLGFLH-ENELYVTGRIKDLIIIYGKN--HYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp EEEEEE-TTEEEEEEESSCHHHHHHHT--THHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred cEEEEE-CCEEEEEcCccceEEECCEe--cCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 999998 88888888 88889988 6777777777 5555555 5666666543
No 62
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.56 E-value=6.4e-16 Score=158.54 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=97.8
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CC------CceeccccccccccccccCCCCC--------------------
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LD------IPICEVFGMSECAGAHTVSAPDD-------------------- 174 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g------~~i~~~yG~TE~~~~~~~~~~~~-------------------- 174 (486)
...++++||.+++||+++++++.++|.+ ++ +.++++||+||++..++......
T Consensus 306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 385 (480)
T 3t5a_A 306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPC 385 (480)
T ss_dssp TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCC
T ss_pred cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeec
Confidence 4456799999999999999999999987 63 36999999999998877655431
Q ss_pred -----CCcCccccccCCceEEEECCCCC------Cccceehh------hhHhhHHHHHHHHHH------cC--CcccceE
Q psy2842 175 -----FKLDGVGRTIPGTQTKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLK------LG--LERYHSV 229 (486)
Q Consensus 175 -----~~~~s~G~p~p~~~~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~------~g--~~~~~~v 229 (486)
.+.+++|+|+| ++++|+|+++. +.|||+++ ||+++++.+++.|.. .| -..|++|
T Consensus 386 ~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~T 464 (480)
T 3t5a_A 386 AGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464 (480)
T ss_dssp CSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEE
T ss_pred CCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeec
Confidence 23468999999 99999997742 57898875 899999999999951 11 2349999
Q ss_pred EEEeecCCchhhhhHH
Q psy2842 230 CIIGFNAPEWFYSDLG 245 (486)
Q Consensus 230 g~~~~~~~~~~~~~~g 245 (486)
||++..+ ++++.++|
T Consensus 465 GDlg~~d-dG~l~~~G 479 (480)
T 3t5a_A 465 GDSGFVT-DGKMFIIG 479 (480)
T ss_dssp EEEEEEE-TTEEEECC
T ss_pred cceeeEE-CCEEEEeC
Confidence 9999986 88776654
No 63
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.54 E-value=6.5e-16 Score=176.55 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=126.3
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC----CCCcCccccccCCceEEEECCCCC---
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~----~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
++||.+++||+++++++.+.|.+ + +..++++||+||++..++..... .....++|+|+++++++|+|+++.
T Consensus 720 ~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p 799 (1304)
T 2vsq_A 720 KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP 799 (1304)
T ss_dssp HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCC
T ss_pred CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCC
Confidence 67999999999999999998887 5 57899999999998776654322 234578999999999999998765
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCC---cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGL---ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~---~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
..|||+++ ||+++++.+++.|..+.+ .+|++|||++..+.++.+.++| .++.+|.. |++.+.|
T Consensus 800 ~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~r--ie~~eIE 877 (1304)
T 2vsq_A 800 FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHR--IELEEIE 877 (1304)
T ss_dssp TTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEE--EEHHHHH
T ss_pred CCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEe--eCHHHHH
Confidence 57888874 899999999999965533 3589999999999999999988 67789998 6888888
Q ss_pred HHHHHhhhhCCceEEEEcC
Q psy2842 263 EACLHCLVTSDANICVVED 281 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~ 281 (486)
..+..+..+.++.++..++
T Consensus 878 ~~l~~~p~V~~a~V~~~~~ 896 (1304)
T 2vsq_A 878 KQLQEYPGVKDAVVVADRH 896 (1304)
T ss_dssp HHHHHSSSCCEEEEEEECC
T ss_pred HHHHhCCCCceEEEEEEec
Confidence 8888888877777766543
No 64
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.49 E-value=1.2e-15 Score=154.56 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=131.5
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
.+++..+++.+.. +||++.++|.++..+.+...
T Consensus 164 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------------------- 197 (436)
T 3qov_A 164 AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQ---------------------------------------------- 197 (436)
T ss_dssp SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHH----------------------------------------------
T ss_pred CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH----------------------------------------------
Confidence 4466677777888 99999999999998876530
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccc-cccCCCCCCCc
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGA-HTVSAPDDFKL 177 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~-~~~~~~~~~~~ 177 (486)
.......++++|.+++||+++++++.+++++ +|++++++||+||+++. ++...+ ..
T Consensus 198 -------------------~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~ 255 (436)
T 3qov_A 198 -------------------EEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQ 255 (436)
T ss_dssp -------------------HTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TC
T ss_pred -------------------HcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CC
Confidence 0001112589999999999999999999998 69999999999999655 333221 11
Q ss_pred CccccccCCceEEEEC-CCCC-----CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCch------h---hh
Q psy2842 178 DGVGRTIPGTQTKIVD-PDEE-----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEW------F---YS 242 (486)
Q Consensus 178 ~s~G~p~p~~~~~i~d-~~~~-----~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~------~---~~ 242 (486)
...|.|.++++++|+| +++. +.||+.++++.+. .+ ..+ |++|||++..+.++ + +.
T Consensus 256 ~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~------~~-~~~---~y~TGDl~~~~~~gc~cG~~~~~il~ 325 (436)
T 3qov_A 256 NGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDRE------MM-PLI---RYRTRDLTRILPGKCPCGRTHLRIDR 325 (436)
T ss_dssp SSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCC------SS-CCC---SEEEEEEECEECSCCTTCCCSCEECC
T ss_pred CeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcC------Cc-eEE---EEEcCCEEEEcCCCCCCCCCccccCc
Confidence 2367788899999999 4443 5799999874321 12 233 89999999988886 4 56
Q ss_pred hHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 243 DLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 243 ~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
++| +++.+|.. |+|.+.++.+..+..+.++.+++.+++
T Consensus 326 i~GR~dd~ik~~G~~--v~p~eiE~~l~~~p~v~~~~vv~~~~~ 367 (436)
T 3qov_A 326 IKGRSDDMFIIKGVN--IFPMQVEKILVQFPELGSNYLITLETV 367 (436)
T ss_dssp CCCBSSSCEEETTEE--ECHHHHHHHHTTCTTEEEEEEEEEEEE
T ss_pred ccCccCCEEEECCEE--ECHHHHHHHHHhCcCcCCcEEEEEEcC
Confidence 777 67788888 566666666666666666666665543
No 65
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.46 E-value=3e-15 Score=151.71 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=131.9
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
.+++..+++.++. +||+++++|.++..+.+....
T Consensus 168 ~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------------------------------- 202 (437)
T 2y27_A 168 GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIER--------------------------------------------- 202 (437)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHH---------------------------------------------
Confidence 3466677778888 999999999999988765300
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccc-cccCCCCCCCc
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGA-HTVSAPDDFKL 177 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~-~~~~~~~~~~~ 177 (486)
. ....+++++|.+++||+++++++.+++++ +|++++++||+||+++. ++...+.. .
T Consensus 203 ------------------~--~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~--~ 260 (437)
T 2y27_A 203 ------------------Q--GLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET--K 260 (437)
T ss_dssp ------------------T--TCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT--C
T ss_pred ------------------c--CCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC--C
Confidence 0 00011378999999999999999999987 79999999999998543 43332211 1
Q ss_pred CccccccCCceEEEECCC-CC-----CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCC-chhh-----hhHH
Q psy2842 178 DGVGRTIPGTQTKIVDPD-EE-----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAP-EWFY-----SDLG 245 (486)
Q Consensus 178 ~s~G~p~p~~~~~i~d~~-~~-----~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~-~~~~-----~~~g 245 (486)
...+.|.++++++|+|++ +. +.||+.++++.+. .+ .++ |++|||++..+. ++.. .+.|
T Consensus 261 ~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~------~~-~~~---~y~TGDl~~~~~~~G~~~~~i~~i~G 330 (437)
T 2y27_A 261 DGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKE------AL-PII---RYRTRDLTRLLPGTARTMRRMEKITG 330 (437)
T ss_dssp SSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCS------SS-CCC---SEEEEEEECEECCSSSSSCEECCCCE
T ss_pred CceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcC------Cc-hhh---eeecCCEEEEeCCCCCCccccCcccc
Confidence 125667789999999964 33 5799999874321 22 234 899999999887 5664 5666
Q ss_pred ----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 246 ----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 246 ----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+++.+|.. |+|.+.++.+..+..+.++.+++++++
T Consensus 331 R~~d~i~~~G~~--v~p~eiE~~l~~~p~V~~~~vv~~~~~ 369 (437)
T 2y27_A 331 RSDDMMIVRGVN--VFPTQIEEQLLKQRALAPHYQIVLTKE 369 (437)
T ss_dssp EGGGCEEETTEE--ECHHHHHHHHTTCTTBCSCCEEEEEEE
T ss_pred ccCCeEEECCeE--ECHHHHHHHHHhCcCcCccEEEEEeec
Confidence 66778888 677777777777777777777766543
No 66
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.44 E-value=4.2e-15 Score=150.92 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=102.2
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccc-cccCCCCCCCcCccccccCCceEEEECCC-CC-----C
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGA-HTVSAPDDFKLDGVGRTIPGTQTKIVDPD-EE-----G 198 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~-~~~~~~~~~~~~s~G~p~p~~~~~i~d~~-~~-----~ 198 (486)
+++|.+++||+++++++.+++++ +|++++++||+||+++. ++...+.. ..| .+.|.++++++|+|++ +. +
T Consensus 212 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~~~~~~~~~~i~d~~~g~~~~~G~ 289 (443)
T 2y4o_A 212 SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG-PVIWEDHFYPEIIDPVTGEVLPDGS 289 (443)
T ss_dssp SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS-EEECTTTEEEEEECTTTCCBCCTTC
T ss_pred CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc-eEEccCCeEEEEEcCCCCCCCCCCC
Confidence 78999999999999999999987 79999999999998543 33332211 112 5567789999999954 43 5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCc-hhh-----hhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPE-WFY-----SDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~-~~~-----~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||+.++++.+. .+ ..+ |++|||++..+.+ +.+ .++| +++.+|.. |+|.+.++.+..+
T Consensus 290 ~Gel~v~~~t~~------~~-p~~---~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~--v~p~eiE~~l~~~ 357 (443)
T 2y4o_A 290 QGELVFTSLTKE------AM-PVI---RYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVN--VFPSQIEEIVVAL 357 (443)
T ss_dssp CEEEEEEESSCS------SS-CCS---SEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEE--ECHHHHHHHHHTS
T ss_pred ceEEEEeCCCcc------cC-hhh---eeecCCEEEEcCCCCCCccccCccccccCCeEEECCEE--ECHHHHHHHHHhC
Confidence 799999875322 22 233 8999999998877 764 5677 67788888 5666666666666
Q ss_pred hhhCCceEEEEcC
Q psy2842 269 LVTSDANICVVED 281 (486)
Q Consensus 269 ~~~~~~~vvi~~~ 281 (486)
..+.++.++++++
T Consensus 358 p~V~~~~vv~~~~ 370 (443)
T 2y4o_A 358 PLLSGQFQITLSR 370 (443)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cCcCccEEEEEec
Confidence 6655665555544
No 67
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.43 E-value=1.1e-13 Score=136.30 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=68.9
Q ss_pred CCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 340 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 340 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
.+++++|+|||||||.||||+++|+++.+++......+++ .++|++++.+|++|.+|+. .++.++..|+++++.++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSL-GPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEP 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCC-CCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCc
Confidence 5789999999999999999999999999999988888888 7889999999999999974 57788999999988765
No 68
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.24 E-value=7.5e-12 Score=126.55 Aligned_cols=142 Identities=8% Similarity=-0.016 Sum_probs=92.8
Q ss_pred CceEEEEcCCCCCCCCceeEechHHHHHHHHHHHH---HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ---YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 341 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+++++++|||||||.||||+++|+++......... .+++ .++|++++.+|+.|..+....++.++..|+++++.+.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGI-RKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTC-CTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCC-CCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 78999999999999999999999999876655533 3466 6789999999998888887888899999999998755
Q ss_pred -ChHHHHHHHHHH------HhhhhHHHHhhhccccccc--ccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 418 -NALKVYKATQAA------IDRANLKSISNAQKIQKFE--FLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 418 -~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~--l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
++....+.+.+. ..+..+..+.....-.... +.+....+.+|+..+. .++ +.+.+.|...|-+.|+
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~-~~~-~~~~~~~g~~v~~~YG 239 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTD-EQR-RKIERMLNVKAYNSFG 239 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCH-HHH-HHHHHHHTSEEEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCH-HHH-HHHHHHhCccEEecCc
Confidence 444444444431 1122234444332222222 3444555666765543 222 2345555433444443
No 69
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.15 E-value=7.5e-12 Score=123.68 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHH---HHccCCCCCeEEEEeCch-hhHHHHHHHHHHHHHhCcEEE
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 413 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~h~~g~~~~~~~~l~~G~tv~ 413 (486)
...+++++|+|||||||.||||+++|+++........ ...++ ..+|++++.+|+ +|..|+... +.++..|++++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~g~~~~g~~~~-~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPG-RPSGNTLAAIPTGPHIVGAINK-ERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTT-CCCCEEEECSCCTTCHHHHHHH-HHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCC-CCcceEEEecCCCchhhhHHHH-HHHHHcCCEEE
Confidence 3578889999999999999999999999998777543 33344 678999999999 999887554 44588899555
Q ss_pred EcCCCh
Q psy2842 414 FADKNA 419 (486)
Q Consensus 414 ~~~~~~ 419 (486)
..+.++
T Consensus 166 ~~~~dp 171 (369)
T 3hgu_A 166 SIDIDP 171 (369)
T ss_dssp CCCCCH
T ss_pred CccCCh
Confidence 444443
No 70
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.13 E-value=7.2e-11 Score=119.35 Aligned_cols=89 Identities=13% Similarity=0.017 Sum_probs=68.5
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHH---HHccCCCCCeEEEEeCch-hhHHHHHHHHHHHHHhCcEEE
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 413 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~h~~g~~~~~~~~l~~G~tv~ 413 (486)
..++++++++|||||||.||||+++|+++........ ..+++ .++|++++.+|+ +|..++ ..++.++..|++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGA-RRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 4568899999999999999999999999987665443 24566 678999999998 566554 45788899999999
Q ss_pred EcCC-ChHHHHHHHHH
Q psy2842 414 FADK-NALKVYKATQA 428 (486)
Q Consensus 414 ~~~~-~~~~~~~~i~~ 428 (486)
+.+. ++....+.+.+
T Consensus 165 ~~~~~~~~~~~~~i~~ 180 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQD 180 (437)
T ss_dssp CCCSCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHH
Confidence 8765 44455555543
No 71
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.12 E-value=6.9e-11 Score=119.72 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=68.2
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHH---HccCCCCCeEEEEeCchh-hHHHHHHHHHHHHHhCcEEE
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ---YFKLESAALSVISFLPLS-HIAAQTVDIYSVMTVAATLW 413 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~-h~~g~~~~~~~~l~~G~tv~ 413 (486)
...+++++++|||||||.||||+++|+++......... .+++ .++|++++.+|+. |..+ ....+.++..|++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~-~~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGG-RPGDTLHNAFGYGLFTGG-LGIHYGAERLGCMVV 166 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHH-HHHHHHHHHHTCEEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEeccCcccccH-HHHHHHHHHcCCEEE
Confidence 45688999999999999999999999999876554433 4566 6789999999995 5544 456788899999999
Q ss_pred EcCC-ChHHHHHHHHH
Q psy2842 414 FADK-NALKVYKATQA 428 (486)
Q Consensus 414 ~~~~-~~~~~~~~i~~ 428 (486)
+.+. ++....+.+.+
T Consensus 167 ~~~~~~~~~~~~~i~~ 182 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRD 182 (443)
T ss_dssp CCCSCCHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHH
Confidence 8765 44445555443
No 72
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=98.96 E-value=2.9e-11 Score=119.42 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=72.2
Q ss_pred CceeEEEeccCCCCHHHHHHHH-h-C-CCceeccccccccccccccCCCCCCCcC-ccccc------cCCceEEEECC-C
Q psy2842 127 DRCRVSLSGAAPISTELKRYFL-S-L-DIPICEVFGMSECAGAHTVSAPDDFKLD-GVGRT------IPGTQTKIVDP-D 195 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~-~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~-s~G~p------~p~~~~~i~d~-~ 195 (486)
+++|.+++||+++++++.++++ + + |+++++.||+||+++++... ++ ++|+| .|+++++|+|+ +
T Consensus 231 ~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~------~~~~~G~~~~~~~~~~~~~v~ivD~~~ 304 (369)
T 3hgu_A 231 QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSL------LITSESQQVIYDSFSPFITYDVVDSIT 304 (369)
T ss_dssp HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC------CBCTTCSSCEEECCTTTEEEEEECTTT
T ss_pred CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecc------ccccCCCcccccCCCCCeEEEEECCCC
Confidence 7899999999999999999999 7 7 89999999999988765332 23 58999 99999999998 5
Q ss_pred CC-----CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeec
Q psy2842 196 EE-----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFN 235 (486)
Q Consensus 196 ~~-----~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~ 235 (486)
+. +.|||.+..+.+. ..-.+++++|++..
T Consensus 305 g~~vp~G~~GEl~vt~l~~~-----------~~l~ry~tgD~~~~ 338 (369)
T 3hgu_A 305 AQTVEYGERGNVIVTHLSPW-----------AFYPRVAERDTAIR 338 (369)
T ss_dssp CSBCCTTCEEEEEEEEEETT-----------EEEEEEEEEEEEEE
T ss_pred CcCCCCCCceEEEEEEcCcc-----------cccccccCCceEEE
Confidence 54 5789998765432 11235677777654
No 73
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=45.54 E-value=7.9 Score=39.72 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCceEEEEcCCCCC-CCCceeEechHHHHH
Q psy2842 339 ATNECCTLVYTSGTE-GASKPVMLSHDNITF 368 (486)
Q Consensus 339 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~ 368 (486)
.++.+.++.-||||| |+||-|.+|...+..
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 456677899999999 889999999998765
No 74
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=36.73 E-value=13 Score=37.89 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCC-CCCceeEechHHHHH
Q psy2842 339 ATNECCTLVYTSGTE-GASKPVMLSHDNITF 368 (486)
Q Consensus 339 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~ 368 (486)
.++.+.+..-||||| |++|-+.+|...+..
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 355667888999999 789999999998765
No 75
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=36.47 E-value=13 Score=37.95 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCC-CCCceeEechHHHHH
Q psy2842 339 ATNECCTLVYTSGTE-GASKPVMLSHDNITF 368 (486)
Q Consensus 339 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~ 368 (486)
.++.+.++.-||||| |+||-+.+|...+..
T Consensus 96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 355667888999999 889999999998765
No 76
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.79 E-value=87 Score=22.81 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=45.8
Q ss_pred cCCchhhhhHHHhHcCCeee--ecCCCCCHHHHHHhhhhCCceE--EEEcChhHHHHHHHHhhcCCCCeEEEEecC
Q psy2842 235 NAPEWFYSDLGAIYAGGFAA--GMYTTNSPEACLHCLVTSDANI--CVVEDDKQLEKILKVKAQCPKLKAIVQYEG 306 (486)
Q Consensus 235 ~~~~~~~~~~g~~~~gg~~v--pi~~~~~~~~l~~~~~~~~~~v--vi~~~~~~~~~~~~~~~~~~~~~~iv~~~~ 306 (486)
.+.+.+..+-.+++.+|..+ .-+|.+-.+.++.+....++.+ +++++..|.++...+...+...--+++++.
T Consensus 10 tdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiydq 85 (134)
T 2l69_A 10 TDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQ 85 (134)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECS
T ss_pred CCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 44455556666777777664 2355555666777777777654 566888898887777665554444555543
No 77
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=22.51 E-value=8.6 Score=29.29 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=28.8
Q ss_pred HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 246 ~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+++.+|.+ ++|...|+.+..+....++.++.++++
T Consensus 6 mIiv~G~n--v~P~eIE~vl~~~p~v~~~~vv~v~~~ 40 (109)
T 3lax_A 6 MIILKGVN--IFPIQIETILLQFKELGSDYLITLETA 40 (109)
T ss_dssp CEEETTEE--ECHHHHHHHHHTCTTEEEEEEEEEEEE
T ss_pred EEEECCEE--ECHHHHHHHHHhCCCcccceEEEEecc
Confidence 47789999 799999988888888888888877665
Done!