RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2842
(486 letters)
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 322 bits (826), Expect = e-104
Identities = 122/220 (55%), Positives = 159/220 (72%), Gaps = 3/220 (1%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
K+Y R AKAFLKLGLER+HSV I+GFN+PEWF + +GAI+AGG A G+YTTNSPEA
Sbjct: 12 KQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSPEA 71
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG--KPDKPGVISWDELMEL 322
C + TS+ANI VV++ KQL+KIL ++ Q P LKAI+QY K +P + SW E MEL
Sbjct: 72 CQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLYSWKEFMEL 131
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL-ES 381
GR+ PDE LD ++E+ N+CCTL+YTSGT G K VMLSHDNIT+ A +++ L
Sbjct: 132 GRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTV 191
Query: 382 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
SV+S+LPLSHIAAQ +DI+ ++V ++FA +ALK
Sbjct: 192 GQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALK 231
Score = 161 bits (409), Expect = 2e-43
Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 5/143 (3%)
Query: 67 WKKVTYKLQT-----TGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVK 121
W+K+ +++ TG+KR IA++AK L+ + + P +RL + L+ KV+
Sbjct: 253 WEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESPPPMCFRLAKKLVFKKVR 312
Query: 122 QAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVG 181
+A+GLDRC+ +GAAPIS E +FLSL+IPI E++GMSE +G HTVS P +++L G
Sbjct: 313 KALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCG 372
Query: 182 RTIPGTQTKIVDPDEEGNGEICL 204
+ +PG +TKI +PD +G GEIC+
Sbjct: 373 KALPGCETKIHNPDADGIGEICI 395
Score = 111 bits (279), Expect = 5e-26
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 421 KVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSII 480
VY+A + I R N ++ISNAQK+QK+ L DFS+P GELGPTMK+KRP V KKY+ I
Sbjct: 531 LVYEAIEEGIKRVNKEAISNAQKVQKWVILEKDFSVPGGELGPTMKLKRPVVAKKYKDEI 590
Query: 481 DKFY 484
DK Y
Sbjct: 591 DKLY 594
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 143 bits (362), Expect = 6e-37
Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 13/235 (5%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+E VR +A L LG+ V I N PEW +DL + G + +Y+T++PE
Sbjct: 49 RELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQ 108
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV----QYEGKPDKPGVISWDELM 320
+ L S++ + VE+ + L+ +L V CPK+ ++ + + +
Sbjct: 109 LAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE-AKALVLEVFP 167
Query: 321 ELGRAAPDESLDRVLETIAT---NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
+ G + + IA ++ T++YTSGT G K VML+H N+ A I +
Sbjct: 168 DEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL 227
Query: 378 KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD-----KNALKVYKATQ 427
V+SFLPL+HI + + + T+ F + LK + T
Sbjct: 228 PPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTV 282
Score = 92.4 bits (230), Expect = 6e-20
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 75 QTTGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLS 134
+ V+R + +A + + L + L+ K++ A+G R R +LS
Sbjct: 303 KAPAVRRKLFRWALKVAYKKISRALLGGGP-LSWLLVADRLVFRKIRDALG-GRIRYALS 360
Query: 135 GAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDP 194
G AP+S EL +F SL IPI E +G++E + +V+ PD F L VG+ +PG + KI D
Sbjct: 361 GGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD- 419
Query: 195 DEEGNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAI 247
+GEI ++ Y N A+AF + G WF + DLG +
Sbjct: 420 ----DGEILVRGPNVMKGYYKNPEATAEAFTEDG----------------WFRTGDLGEL 459
Query: 248 YAGGF 252
G+
Sbjct: 460 DEDGY 464
Score = 53.5 bits (129), Expect = 2e-07
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 421 KVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSII 480
K+ K +++ N + ++I+KF LP +F+ GEL PT+K+KR ++ +Y+ I
Sbjct: 545 KLLKLILPRVNKGNKRL-FGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEI 603
Query: 481 DKFY 484
+ Y
Sbjct: 604 EAVY 607
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 139 bits (354), Expect = 2e-36
Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 58/212 (27%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E VR +A + LG++ V I+ N PEW +DL + AG +Y T+SPE
Sbjct: 9 AELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSPEE 68
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+ L S A + VE DKP
Sbjct: 69 VAYILNDSGARVVFVE----------------------------DKP------------- 87
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
++ TL+YTSGT G K VML+H N+ AA +++ L S
Sbjct: 88 ----------------DDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPL-SPGD 130
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
V+SFLPL+H+ Q + Y ++ A + FA+
Sbjct: 131 RVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE 162
Score = 102 bits (257), Expect = 2e-23
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 30/140 (21%)
Query: 121 KQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGV 180
+ A+G R R ++SG AP+ E+ +F +L IPI E +G++E +G TV+ P D ++ V
Sbjct: 209 RWALGGGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIRIGTV 268
Query: 181 GRTIPGTQTKIVDPDEEGNGEICLKE-------YEANVRTVAKAFLKLGLERYHSVCIIG 233
G+ +PG + +I + +GEI ++ Y+ T A+A + G
Sbjct: 269 GKPLPGVEVRIAE-----DGEILVRGPNVMKGYYKNPEAT-AEALDEDG----------- 311
Query: 234 FNAPEWFYS-DLGAIYAGGF 252
W ++ D+G + GF
Sbjct: 312 -----WLHTGDIGRLDEDGF 326
Score = 61.0 bits (149), Expect = 5e-10
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 421 KVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFV 472
+V + ++ AN ++ ++I+KF LP +FSI GEL PTMK++R V
Sbjct: 406 EVRALIRKEVEEAN-ARLARVEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 110 bits (278), Expect = 1e-26
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 10/213 (4%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+E + +A A LG+ V I+ N+PEW + L + AG + + E
Sbjct: 3 RELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAER 62
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+ L S+A + + DD+ L K+L+V + L A++ + ++ + L
Sbjct: 63 LAYILEDSEAKVLIT-DDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASA 121
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
P +D ++ ++YTSGT G K VML+H N+ AA + + F L +
Sbjct: 122 EPPAPPVDP-------DDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL-TPGD 173
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
V+ LPL + +I+ + TL K
Sbjct: 174 RVLLLLPLHFDGS-VWEIFGPLLAGGTLVLVPK 205
Score = 57.7 bits (140), Expect = 6e-09
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDG--VG 181
L R+ LSG P+ EL R +P+ +G +E T + P D ++ +G
Sbjct: 246 LSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIG 305
Query: 182 RTIPGTQTKIVDPDEE-----GNGEICL------KEYEAN-VRTVAKAFLKLGLERYHS 228
R +PG + K++D + E GE+C+ + Y + T A+ F++ G Y +
Sbjct: 306 RPLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELT-AERFVEDGWGMYRT 363
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 99.8 bits (249), Expect = 2e-22
Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 8/223 (3%)
Query: 211 VRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 270
+A A LG++ V I+ N+PE+ + L A+ AG A + +P + L
Sbjct: 48 ANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILN 107
Query: 271 TSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 330
+ A + + + + V P + ++ D+ I+ + L G ++
Sbjct: 108 DAGAKVLIT-SAEFAALLEAVAEALPVVLVVLLVGDADDRLP-ITLEALAAEGPGPDADA 165
Query: 331 LDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISF 389
+ +A L+YTSGT G K V+L+H N+ NAA I + V+S+
Sbjct: 166 RPVDPDDLAF-----LLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSW 220
Query: 390 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQAAIDR 432
LPL HI V + + + TL +
Sbjct: 221 LPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263
Score = 69.4 bits (170), Expect = 2e-12
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIP 185
R+ LSG AP+ EL F I I E +G++E + T++ PDD K VGR +P
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353
Query: 186 GTQTKIVDPDEEGN-----GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWF 240
G + +IVDPD GEI ++ V K + + F+ W
Sbjct: 354 GVEVRIVDPDGGEVLPGEVGEIWVRGP-----NVMKGYWNRPEATAEA-----FDEDGWL 403
Query: 241 YS-DLGAIYAGGF 252
+ DLG + G+
Sbjct: 404 RTGDLGYVDEDGY 416
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 95.8 bits (239), Expect = 4e-21
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 115 LILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD 174
L+ K+ + +GLD+ R++ SGAAP+ L ++ L +PICE +GM+E T++ P D
Sbjct: 263 LVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTLNYPGD 322
Query: 175 FKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 205
++ VG+ IPG + KI E+ GEI ++
Sbjct: 323 RRIGTVGKPIPGVELKI---SED--GEILIR 348
Score = 93.9 bits (234), Expect = 2e-20
Identities = 61/206 (29%), Positives = 86/206 (41%), Gaps = 12/206 (5%)
Query: 211 VRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 270
R +A A LGLE + I+ N EW +DL AG + +Y T + E + L
Sbjct: 16 ARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLE 75
Query: 271 TSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP-DE 329
SDA V K L+ +KA P+ + WD+L L P
Sbjct: 76 HSDAKALFV--GK-LDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDL--LAATEPLQG 130
Query: 330 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISF 389
E +A T+VYTSGT G K VMLS F A I+ L ++S+
Sbjct: 131 RPLPEPEDLA-----TIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPND-RLLSY 184
Query: 390 LPLSHIAAQTVDIYSVMTVAATLWFA 415
LPL+HIA + + + A ++F
Sbjct: 185 LPLAHIAERVIVEGGSLYSGAEVFFV 210
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 91.5 bits (228), Expect = 1e-19
Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 36/215 (16%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
KE E + LGL+ + I N PEW ++ +Y T EA
Sbjct: 9 KEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEA 68
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+ L ++ +I + K V S++EL ELG+
Sbjct: 69 IEYILNETEISIVFCDAVK-----------------------------VYSFEELEELGK 99
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAA 383
E + T++YTSGT G K VML+H NI A I + +
Sbjct: 100 KNKVPPTPPKPEDL-----ATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPT 154
Query: 384 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418
IS+LPL+HI + V+ + + + + +
Sbjct: 155 DVYISYLPLAHIFERVVENV-CLYIGGRIGYYSGD 188
Score = 84.9 bits (211), Expect = 1e-17
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 68 KKVTYKLQT-TGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRW--LILSKVKQAM 124
K + K+ G+KR + N+A Y + + Y W L+ K+K A+
Sbjct: 216 KGILAKVNAKGGLKRTLFNFA--------YNYKLAALRRGHGYASPLWDKLVFKKIKAAL 267
Query: 125 GLDRCRVSLSGAAPISTELKRYFLS--LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGR 182
G R R+ LSG AP+S + + FL L P+ + +G++E T+S P D VG
Sbjct: 268 GG-RVRLMLSGGAPLSPDTQE-FLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGP 325
Query: 183 TIPGTQTKIVD-P-------DEEGNGEICLK 205
+P + K+VD P D+ GEIC++
Sbjct: 326 PLPCCEIKLVDVPEMGYFAKDDPPRGEICIR 356
Score = 45.6 bits (109), Expect = 4e-05
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 435 LKSISNAQKIQKFEFL------PADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFY 484
L I ++ FE + P F+ G L PT K+KRP + K+Y+ ID+ Y
Sbjct: 484 LNEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 80.4 bits (199), Expect = 4e-16
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 10/209 (4%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 254
D + E+ + +AK KLGL++ V +I N+ E+ LG + AGG +
Sbjct: 4 DADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVS 63
Query: 255 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVI 314
+ +P+ H L S + + D +L+K+ + + + I+ + PD I
Sbjct: 64 AANPSYTPDELAHQLKISKPKL-IFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRI 122
Query: 315 SWDELMELGRAAPDESLDRVL--ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 372
LG + + A L+Y+SGT G K VMLSH NI N +
Sbjct: 123 EDLLEPRLGAEDEFRPTPLIDGKDDTA-----ALLYSSGTTGLPKGVMLSHKNIIANLSQ 177
Query: 373 IIQYFKLESAALS--VISFLPLSHIAAQT 399
+ K + + V++FLP H T
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLT 206
Score = 62.3 bits (152), Expect = 3e-10
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 187
RV SGAAP+S EL+ + I + +GM+E A T++ P D K VGR +P
Sbjct: 266 RVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNV 325
Query: 188 QTKIVDPDEEGN------GEICLK 205
+ KIVD D + GE+C+K
Sbjct: 326 EAKIVDEDGGKSLGPNERGELCVK 349
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 77.1 bits (191), Expect = 4e-15
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---S 261
E + V +A A LG+++ V + +N+ E+ + G A ++ N
Sbjct: 35 AELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIG---AVLHPINIRLK 91
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKPDKPGVISWDELM 320
PE + L ++ + +V+ + +L + Q P ++ ++ P P E
Sbjct: 92 PEEIAYILNDAEDRVVLVDSE--FVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYE 149
Query: 321 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 380
EL AA D I N+ ++YTSGT G K V+LSH N+ ++ + + KL
Sbjct: 150 ELLAAASDTFDF---PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL- 205
Query: 381 SAALSVISFLPLSHIAAQTVDIYSVMT 407
S + +P+ H+ A + ++M
Sbjct: 206 SRDDVYLVIVPMFHVHAWGLPYLALMA 232
Score = 56.0 bits (136), Expect = 2e-08
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 114 WLILSKVKQAMGLD--RCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVS 170
W +L K +A +D R+ + G A + L R F I + + +GM+E + +V
Sbjct: 266 WQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL 325
Query: 171 APDDFKLDG------VGRTIPGTQTKIVDPDEE-----GN--GEICLK 205
P+D GR +PG + +IVD D + G GEI ++
Sbjct: 326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVR 373
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 73.1 bits (179), Expect = 1e-13
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 231 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILK 290
I G N+PEW S G + +Y T A + S+ +I VE+ +KI +
Sbjct: 109 IYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEE----KKISE 164
Query: 291 VKAQCPK----LKAIVQYEG-------KPDKPGVI--SWDELMELGRAAPDESLDRVLET 337
+ CP +K +V + G + + G++ +WDE ++LG + L
Sbjct: 165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYD-----LPI 219
Query: 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSV----ISFLPLS 393
++ CT++YTSGT G K VM+S+++I A +I+ K +AAL+V +S+LPL+
Sbjct: 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA 279
Query: 394 HIAAQTVD 401
HI + ++
Sbjct: 280 HIFDRVIE 287
Score = 44.6 bits (105), Expect = 8e-05
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 90 TSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS 149
++ + ++K S L L+ +KVKQ +G R+ LSGAAP+++ ++ FL
Sbjct: 350 SAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLG-GNVRIILSGAAPLASHVES-FLR 407
Query: 150 LDIPICEV---FGMSE-CAGAHTVSAPDDFKLDG-VGRTIPGTQTKIVDPDE-------- 196
+ + C V +G++E CAG VS PD+ + G VG +P ++ E
Sbjct: 408 V-VACCHVLQGYGLTESCAGTF-VSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS 465
Query: 197 EGNGEICLK 205
GEIC++
Sbjct: 466 TPRGEICIR 474
Score = 36.9 bits (85), Expect = 0.026
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 435 LKSISNAQKIQKFEFL------PADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFY 484
L ++ +K++ FE + P F + L PT K KRP ++K YQS+ID+ Y
Sbjct: 600 LVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMY 655
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 72.8 bits (179), Expect = 1e-13
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 32/220 (14%)
Query: 209 ANVRT-VAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA--- 264
RT + ++ G+ + V + N PEW D + +Y T P+A
Sbjct: 85 GTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKF 144
Query: 265 -CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK----PDKPG-----VI 314
H V A I V L +L ++ P ++ IV G P P ++
Sbjct: 145 IVNHAEV---AAIFCVPQ--TLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIV 199
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII 374
++ +L+ GR++P E +AT + YTSGT G K V+L+H N+ N A
Sbjct: 200 TYSKLLAQGRSSPQPFRPPKPEDVAT-----ICYTSGTTGTPKGVVLTHGNLIANVAGSS 254
Query: 375 QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414
K + + IS+LPL+H IY + L +
Sbjct: 255 LSTKFYPSDVH-ISYLPLAH-------IYERVNQIVMLHY 286
Score = 45.1 bits (107), Expect = 7e-05
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 21/106 (19%)
Query: 115 LILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPIC------EVFGMSECAGAHT 168
L+ +K+K +G R R SGA+P+S ++ FL IC E +GM+E + +
Sbjct: 365 LVFNKIKAKLG-GRVRFMSSGASPLSPDVME-FLR----ICFGGRVLEGYGMTETSCVIS 418
Query: 169 VSAPDDFKLDGVGRTIPGTQTKIVDPDEEG---------NGEICLK 205
D VG P + K+VD E GEIC++
Sbjct: 419 GMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVR 464
Score = 37.8 bits (88), Expect = 0.011
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 433 ANLKSISNAQKIQKFEF------LPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485
A++ ++ +++ FEF +P F++ G L PT KVKRP + I Y
Sbjct: 590 ADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYA 648
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 70.3 bits (173), Expect = 7e-13
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 10/179 (5%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E A VR A A LG+ + V I N+P W + LGA+ AG + T + +
Sbjct: 35 ELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEA 94
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDELMEL 322
+ L DA V L + P L+ +V E P + ++ + +
Sbjct: 95 AYILARGDAKALFVLGL-FLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAA 153
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
G + + + + +A +++TSGT G K ML+H + NAA +Y L
Sbjct: 154 G-DPAERAPEVDPDDVAD-----ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTE 206
Score = 45.7 bits (109), Expect = 4e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPIC-EVFGMSECAGAHTVSAPDDFKLDG---VGRTI 184
R++++GAA + L F S L + I +G+SE +G T + DD + +G I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343
Query: 185 PGTQTKIVDPDEEGN-----GEICLKEYEANV 211
G + KIV+ E GE+ ++ NV
Sbjct: 344 AGVENKIVNELGEEVPVGEVGELLVRGP--NV 373
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 69.8 bits (172), Expect = 1e-12
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 296 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355
P+L+ ++ + G PG++++DEL+ LGRA D L T+ ++ + YTSGT G
Sbjct: 155 PELRRVI-FLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213
Query: 356 SKPVMLSHDNITFNA 370
K L+H NI N
Sbjct: 214 PKGATLTHRNILNNG 228
Score = 40.2 bits (95), Expect = 0.002
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 151 DIPICEVFGMSECAGAHTVSAPDDFKLD----GVGRTIPGTQTKIVDPDEEGN------- 199
++ I +GM+E + T + DD L+ VGR +P + KIVDP E G
Sbjct: 343 EVTIA--YGMTETSPVSTQTRTDD-PLEKRVTTVGRALPHLEVKIVDP-ETGETVPRGEQ 398
Query: 200 GEICLKEY 207
GE+C + Y
Sbjct: 399 GELCTRGY 406
Score = 32.9 bits (76), Expect = 0.41
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEW 239
+E+ V +AK L LG+E+ V I N PEW
Sbjct: 47 REFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEW 81
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 67.2 bits (164), Expect = 9e-12
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 23/225 (10%)
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
Y+A +R + A G+ I G N PEW + G +Y T A
Sbjct: 84 YDAAIR-IGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVE 142
Query: 267 HCLVTSDANICVVEDDKQLEKILKVKAQCPK-LKAIVQY-------EGKPDKPGV--ISW 316
+ ++ +I V++ K + IL +C LK IV + + + ++ GV SW
Sbjct: 143 FIINHAEVSIAFVQESK-ISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSW 201
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
+E +G SLD L + CT++YTSGT G K V+L++ I
Sbjct: 202 EEFSLMG------SLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHL 255
Query: 377 FKLESAAL----SVISFLPLSHIAAQTVDIYSVMTVAAT-LWFAD 416
K+ S S+LPL+H+ Q ++ Y + A+ W D
Sbjct: 256 LKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGD 300
Score = 46.0 bits (109), Expect = 4e-05
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 73 KLQTTG-VKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRV 131
K+ + G +++ + ++A + L L K + + + L+ K+K+ +G R R+
Sbjct: 333 KISSGGMLRKKLFDFAYNYKL----GNLRKGLKQEEASPRLDRLVFDKIKEGLG-GRVRL 387
Query: 132 SLSGAAPISTELKRYFLSLDIPICEV----FGMSE-CAGAHTVSAPDDFKLDG-VGRTIP 185
LSGAAP+ ++ + L + C V +G++E C G T S + F + G VG +
Sbjct: 388 LLSGAAPLPRHVEEF---LRVTSCSVLSQGYGLTESCGGCFT-SIANVFSMVGTVGVPMT 443
Query: 186 GTQTKIVDPDEEG--------NGEICLK 205
+ ++ E G GEICL+
Sbjct: 444 TIEARLESVPEMGYDALSDVPRGEICLR 471
Score = 37.9 bits (88), Expect = 0.012
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 435 LKSISNAQKIQKFEFL------PADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFY 484
L S +++ FE L P F I + PT K+KRP ++K Y+ ID+ Y
Sbjct: 597 LNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 66.4 bits (163), Expect = 1e-11
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 372
IS+++ + G A ++ + +A L YT GT G K ML+H N+ N
Sbjct: 103 AISFEDALASG-APLPLPVELSPDDLAV-----LQYTGGTTGVPKGAMLTHRNLVANVQQ 156
Query: 373 IIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW----FADKNALKV---YK 424
I + K L ++ LPL HI TV++ + + AT F N LK Y+
Sbjct: 157 IAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYR 216
Query: 425 AT 426
T
Sbjct: 217 FT 218
Score = 58.7 bits (143), Expect = 3e-09
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 187
R+ +SG AP+ E+ F P+ E +G++E + TV+ D + G +G +PGT
Sbjct: 245 RLCISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGT 304
Query: 188 QTKIVDPDEEGN-------GEICLK 205
+ KIVD EGN GE+ ++
Sbjct: 305 EVKIVDD--EGNELPPGEVGELVVR 327
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 65.2 bits (160), Expect = 1e-11
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 22/113 (19%)
Query: 130 RVSLSGAAPISTELKR-YFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPG 186
R+ + GAAP+ ELKR + +GM+E T+ +P+D+ KL VGR +PG
Sbjct: 118 RLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPG 177
Query: 187 TQTKIVDPDEEGN-------GEICLK------EY----EANVRTVAKAFLKLG 222
+ +IVD D G GEI ++ Y EA + +L G
Sbjct: 178 VEVRIVDED--GRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTG 228
Score = 52.9 bits (128), Expect = 1e-07
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 396
++YTSGT G K VML+H N+ NA + L + +++ PL H A
Sbjct: 4 ALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLA-APLYHAA 55
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 64.2 bits (156), Expect = 6e-11
Identities = 67/244 (27%), Positives = 100/244 (40%), Gaps = 29/244 (11%)
Query: 210 NVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 269
+ R AKA LGL + V ++ N E+ LG + AGG +G T
Sbjct: 64 DTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQA 123
Query: 270 VTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDE 329
+ A + +V +D K+ + L IV G+ G ++W EL+E A D
Sbjct: 124 EAAGAKL-IVTNDTNYGKVKGLG-----LPVIVL--GEEKIEGAVNWKELLEAADRAGDT 175
Query: 330 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES-AALSVIS 388
S E I + C L ++SGT G SK VML+H N+ N + E + +
Sbjct: 176 S---DNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLG 232
Query: 389 FLPLSHIAAQTVDIYSVMTVA-ATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQKF 447
+P H IY + + ATL +N KV + R L++ NA Q+
Sbjct: 233 LIPFFH-------IYGITGICCATL----RNKGKV-----VVMSRFELRTFLNALITQEV 276
Query: 448 EFLP 451
F P
Sbjct: 277 SFAP 280
Score = 29.6 bits (66), Expect = 5.0
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 128 RCRVSLSGAAPISTELKRYFLSL--DIPICEVFGMSE--CAGAHTVSAPDD----FKLDG 179
+ + ++ AAP++ EL F + + + E +G++E C T P+ K +
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCI-TLTHGDPEKGHGIAKKNS 362
Query: 180 VGRTIPGTQTKIVDPD------EEGNGEICLK 205
VG +P + K +DPD + GE+C++
Sbjct: 363 VGFILPNLEVKFIDPDTGRSLPKNTPGELCVR 394
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 64.1 bits (156), Expect = 7e-11
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 27/235 (11%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
KE V + A G E V I G N P+W + +Y T P A
Sbjct: 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPK-LKAIVQY----EGKPDKPGVI----- 314
+ + ++ + V+D K+++++L+ + K LKAIV + E + DK I
Sbjct: 140 VDYIVDHAEIDFVFVQD-KKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY 198
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII 374
SW + + +G+ P E+ + CT++YTSGT G K V+L+H+ + A +
Sbjct: 199 SWIDFLHMGKENPSETN-----PPKPLDICTIMYTSGTSGDPKGVVLTHEAV---ATFVR 250
Query: 375 ------QYFKLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWF-ADKNALK 421
+ F+ + V +SFLPL+HI + ++ Y A+ ++ D NAL+
Sbjct: 251 GVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALR 305
Score = 42.1 bits (99), Expect = 6e-04
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 93 QHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDI 152
++ +A++ + S + +L KVK +G R R+ +SG AP+STE++ + L +
Sbjct: 350 KYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG-GRLRLLISGGAPLSTEIEEF---LRV 405
Query: 153 PIC----EVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGTQTKI---------VDP-DEE 197
C + +G++E G T+ PD+ + G VG P ++ DP E
Sbjct: 406 TSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG--APAVYNELRLEEVPEMGYDPLGEP 463
Query: 198 GNGEICLK 205
GEIC++
Sbjct: 464 PRGEICVR 471
Score = 32.9 bits (75), Expect = 0.49
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 435 LKSISNAQKIQKFEFL------PADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFY 484
LKS + K++ FE++ F + + T+K +R ++K YQ ID+ Y
Sbjct: 597 LKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMY 652
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 61.9 bits (151), Expect = 3e-10
Identities = 48/217 (22%), Positives = 77/217 (35%), Gaps = 33/217 (15%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E E VR +A G + V ++ N+ E+ L + AG +P
Sbjct: 37 ELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPA-- 94
Query: 266 LHCLVTSDANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQYEGKPDKPGVISWDELM 320
E KQ++ + KL ++ V+ D
Sbjct: 95 --------------EIAKQVKDSGAKLAITTSELAEKLASLAL-------EPVVLLDSAD 133
Query: 321 ELGRAAPDESLDRVLET----IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
+ A D E I ++ L Y+SGT G SK VML+H N+ N A ++
Sbjct: 134 DGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAG 193
Query: 377 FKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATL 412
V LP+ HI TV + +++ + AT+
Sbjct: 194 EGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATV 230
Score = 57.3 bits (139), Expect = 1e-08
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 115 LILSKVKQAMGLDRCRVSL----SGAAPISTELKRYFLS--LDIPICEVFGMSE-CAGAH 167
++L+ VK + SL SGAAP+ EL F + + + + +GM+E
Sbjct: 259 IVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTT 318
Query: 168 TVSAP-DDFKLDGVGRTIPGTQTKIVDPD-----EEGN-GEICLK 205
P D K VGR +P + KIVDP+ GE+ ++
Sbjct: 319 MCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVR 363
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 61.7 bits (150), Expect = 4e-10
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 15/191 (7%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268
V +A LGL R V I E + GA AGG + E H
Sbjct: 33 ERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHI 92
Query: 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY----EGKPDKPG--VISWDELMEL 322
L + + +V ++L+ + C L+ ++ PG SW +L+ L
Sbjct: 93 LADCNVRL-LVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPASWPKLLAL 151
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 382
G A P + +A ++YTSG+ G K V+LSH N+ A + Y +
Sbjct: 152 GDADP--PHPVIDSDMAA-----ILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPD 204
Query: 383 ALSVISFLPLS 393
+++ LPLS
Sbjct: 205 D-RLLAVLPLS 214
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 60.9 bits (148), Expect = 6e-10
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 293 AQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGT 352
+ P+L+ +V PG ++W EL G E+L ++ ++ + YTSGT
Sbjct: 154 ERLPELRGVVSL-APAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGT 212
Query: 353 EGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 412
G K LSH NI N + + L + +PL H + MTV A L
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVP-VPLYHCFGMVLANLGCMTVGACL 271
Score = 37.8 bits (88), Expect = 0.013
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEV---FGMSECAGAHTVSAPDD---FKLDGVGRT 183
R + AP E+ R + ++ + EV +GM+E + + D +++ VGRT
Sbjct: 320 RTGIMAGAPCPIEVMRRVMD-EMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRT 378
Query: 184 IPGTQTKIVDPDEE-----GNGEICLKEY 207
P + K+VDPD GE+C + Y
Sbjct: 379 QPHLEVKVVDPDGATVPRGEIGELCTRGY 407
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 60.7 bits (148), Expect = 7e-10
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 403
++YTSGT G K V+L+H + F A + L + +++ LPL HI AQ +Y
Sbjct: 84 AAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV-LLTPLPLFHINAQAYSVY 142
Query: 404 SVMTVAATLWFADK 417
+ + V ATL +
Sbjct: 143 AALLVGATLVLLPR 156
Score = 35.6 bits (83), Expect = 0.057
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
+ AP+ + F + + E +GM+E G ++ D GR PG +
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERFGVKLVEGYGMTE-TGVPIIAPGDPAPPGSCGRPRPGVE 255
Query: 189 TKIVDPDEEGN-------GEICLK 205
+IVD D G GE+ ++
Sbjct: 256 VRIVDED--GREVPPGEVGELVVR 277
Score = 30.2 bits (69), Expect = 2.7
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E V +A L LG+ V ++ N PE+ + G A + T E
Sbjct: 8 ELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEEL 67
Query: 266 LHCLVTSDANICVVE 280
H L S A + VV+
Sbjct: 68 AHILDHSGARLIVVD 82
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 60.1 bits (146), Expect = 1e-09
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 19/220 (8%)
Query: 206 EYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E + VA+A L GL+ +V ++ N P + + LG G A + T +
Sbjct: 8 EVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGS 67
Query: 265 CLHCLVTSDANICVVEDDKQ--LEKILKVKAQCPKLKAI---VQYEGKPDKP-GVISWDE 318
LHC A + V + + +E+IL P L+A+ V Y P GVIS
Sbjct: 68 LLHCFRCCGARVLVADPELLEAVEEIL------PALRAMGVRVFYLSHTSPPEGVISLLA 121
Query: 319 LMELGRAAPDESLDRVLETIAT-NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
++ AA DE + L + + +YTSGT G K +SH + +
Sbjct: 122 KVD---AASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVL--QCSGMLSL 176
Query: 378 KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
+A V + LPL H + + I + + ATL K
Sbjct: 177 CGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPK 216
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/218 (28%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
I E EA T A A L+ G + SV + N P+ + GA+ AG + +
Sbjct: 46 PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLD 105
Query: 261 SPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKL---------KAIVQYEGK 307
A H L S A + + D L K L+ K +L K
Sbjct: 106 GERALSHKLSDSGARLLITSDLAALLPMALKFLE-KGLLDRLIVCEDDNWGKVGTPQAPI 164
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
P P ++++ + ++ G AAP E + ++ L YT GT G K ML+H N+T
Sbjct: 165 PADPRIVTYADFVK-GAAAPAE-----WPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT 218
Query: 368 FNAACIIQYFKLESAALS-----VISFLPLSHIAAQTV 400
+A I + S A VI LPL HI A TV
Sbjct: 219 -SAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTV 255
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 58.7 bits (143), Expect = 2e-09
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 126 LDRCRVSLSGAAPISTEL-KRYFLSLDIP-ICEVFGMSECAGAHTVSAPDDF---KLDGV 180
L R +SG AP+ EL +R + I +GM+E +G T ++ DD + V
Sbjct: 116 LSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTV 175
Query: 181 GRTIPGTQTKIVDPDEEGN-------GEICLKEY 207
GR +PG + KIVDPD G GEIC++ Y
Sbjct: 176 GRPLPGVEVKIVDPD--GGEVPPGEVGEICVRGY 207
Score = 51.4 bits (124), Expect = 5e-07
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 403
+ YTSGT G K ML+H N+ N I + L + + +PL H+ + +
Sbjct: 5 ALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL-TEGDRTLVPVPLFHVFGLVLGVL 63
Query: 404 SVMTVAATLWFADK 417
+ +T ATL +K
Sbjct: 64 ASLTAGATLVLMEK 77
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 58.5 bits (142), Expect = 3e-09
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
G + + D G + E + V A +LG+ER + V +I + PE+ + G
Sbjct: 19 GDKIALYYDD----GSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWG 74
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
AI G + T +P+ + L S A + V+ ++ E + + P L+ ++
Sbjct: 75 AIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEEL-WEVLKPALQKDPHLRHVIVVG 133
Query: 306 GKPDKPGVISWDELMELGRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSH 363
G PG +S+ +L + AA + LE AT ++ +Y+SG+ G K V+ H
Sbjct: 134 GAG--PGALSYAQL--IATAAEE------LEAAATSADDMAFWLYSSGSTGRPKGVVHLH 183
Query: 364 DNIT 367
++
Sbjct: 184 HDML 187
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 57.2 bits (139), Expect = 8e-09
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRT 183
L R L G API L IP+ +GM+E A PDDF KL VG+
Sbjct: 188 LSSLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKP 247
Query: 184 IPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS- 242
+PG + +IV+P +GEI ++ ++ +L + + WF++
Sbjct: 248 LPGRELRIVNP---QDGEILVRG-----PSLFLGYLP-QGGLTPPL-----DEDGWFHTG 293
Query: 243 DLGAIYAGGF 252
DLG + A G+
Sbjct: 294 DLGYLDAEGY 303
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 395
T+++TSG+ G K V+ + N +A + L ++S LPL H+
Sbjct: 80 ATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLS-LPLFHV 130
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 57.3 bits (139), Expect = 9e-09
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 187
R +L GAAP+ E+ R F + + I E +G++E +V+ PD + G VG +P
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 188 QTKIVDPDEEGN----------GEICLK 205
+ ++V D+ G G +C+
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIA 423
Score = 48.8 bits (117), Expect = 4e-06
Identities = 47/209 (22%), Positives = 73/209 (34%), Gaps = 20/209 (9%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268
A+V A LG+ V + N PE ++ G A G A + PE
Sbjct: 66 ADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLLEPEQIAEL 124
Query: 269 LVTSDANICVV---EDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L + A + V + +K+ +V A P+L+ +V+ + PG + +
Sbjct: 125 LRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRK 184
Query: 325 AA-------------PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 371
A P + L I ++ +T GT G K +H N NA
Sbjct: 185 AHARILDFDAELARQPGDRLFSG-RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAW 243
Query: 372 CIIQYFKLESAALSVISFLPLSHIAAQTV 400
L +V LPL H+ A V
Sbjct: 244 LGALLLGLGPGD-TVFCGLPLFHVNALLV 271
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 57.4 bits (139), Expect = 1e-08
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 25/202 (12%)
Query: 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 274
A + LG + V I EW + G +Y + EA H L ++
Sbjct: 120 ASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV 179
Query: 275 N--ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG----------VISWDELMEL 322
IC D KQL+K++ + +Q +K ++ + + V S+ E+ +L
Sbjct: 180 TTVIC---DSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKL 236
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLES 381
G+ P + IA ++YTSG+ G K VM++H NI A ++ KL
Sbjct: 237 GKENPVDPDLPSPNDIAV-----IMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK 291
Query: 382 AALSVISFLPLSHI---AAQTV 400
+ +++LPL+HI AA++V
Sbjct: 292 NDV-YLAYLPLAHILELAAESV 312
Score = 49.0 bits (117), Expect = 4e-06
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 115 LILSKVKQAMGLDRCRVSLSGAAPISTELKRYF-LSLDIPICEVFGMSE-CAGAHTVSAP 172
L+ K++ +G R R LSG AP+S + +R+ + L PI + +G++E CAGA T S
Sbjct: 409 LVFKKIRAVLG-GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGA-TFSEW 466
Query: 173 DDFKLDGVGRTIPGTQTKIVDPDEEG 198
DD + VG +P K+V +E G
Sbjct: 467 DDTSVGRVGPPLPCCYVKLVSWEEGG 492
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 55.0 bits (133), Expect = 3e-08
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT 187
R +L+GAAP+ E+ R F ++ +P+ E +GM+E G ++ + VG +P T
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYT 184
Query: 188 QTKIVDPDEEGN-GEIC 203
+ ++ D G G C
Sbjct: 185 RVRVAKLDAGGALGRDC 201
Score = 30.7 bits (70), Expect = 1.5
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 403
+T GT GA K SH N NA L +++ LPL H+ V
Sbjct: 5 AAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGD-VLLNGLPLFHVGGAIVTGL 63
Query: 404 SVMTVAATLWFA 415
+ + AT+
Sbjct: 64 APLARGATVVLP 75
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 55.3 bits (134), Expect = 4e-08
Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 208 EAN--VRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E N A G+ + V ++ N PE+ + LG G + T A
Sbjct: 67 ELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA-VVALLNTQQRGAV 125
Query: 266 L-HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L H L DA +V ++ +E + +A + G +++L
Sbjct: 126 LAHSLNLVDAKHLIVGEE-LVEAFEEARAD-LARPPRLWVAGGDTLDDPEGYEDLAAAAA 183
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
AP + + + +YTSGT G K ++SH
Sbjct: 184 GAPTTNPA-SRSGVTAKDTAFYIYTSGTTGLPKAAVMSH 221
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 54.6 bits (132), Expect = 5e-08
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 187
R+ +SG P+S EL F PI E +G++E + + + + K G VGR +PG
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178
Query: 188 QTKIVDPDEEGN-----GEICLK 205
+ ++VD + + GE+ ++
Sbjct: 179 EVRVVDEEGKPLPPGEVGELVVR 201
Score = 44.2 bits (105), Expect = 8e-05
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 403
++YTSGT G K V+LSH N+ NA + Q L + ++S LPL H+ +
Sbjct: 3 AFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDV-LLSVLPLFHVVGGGSGLL 61
Query: 404 SVMTVAATLWFADK 417
+ T+ +
Sbjct: 62 GALLAGGTVVLYEG 75
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 53.7 bits (130), Expect = 1e-07
Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTN--- 260
++ VR +A A LG++ V + +N + L +A G A ++T N
Sbjct: 29 ADFYRRVRRLANALESLGVKPGDRVATLAWNT----HRHLELYFAVPGMGAVLHTLNPRL 84
Query: 261 SPEACLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQY----EGKPDKPGVIS 315
SPE + + ++ + V+DD +L + + P +KA+V Y + P V +
Sbjct: 85 SPEQIAYIINHAEDKVIFVDDD--FLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYA 142
Query: 316 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN--AACI 373
++EL+E +P+ + E N L YTSGT G K V+ SH ++ + A+ +
Sbjct: 143 YEELLE--EESPEYEWPELDE----NTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASAL 196
Query: 374 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 407
L + +V+ +P+ H+ A + + M
Sbjct: 197 PDSLGLSESD-TVLPVVPMFHVNAWGLPYAATMV 229
Score = 36.8 bits (86), Expect = 0.024
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 43/148 (29%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVS--------APDDFKLD--- 178
RV + G+A L + + +GM+E + TVS P++ KL+
Sbjct: 283 RVVVGGSALPR-SLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRA 341
Query: 179 GVGRTIPGTQTKIVDP-------DEEGNGEICL------KEYEANVRTVAKAFLKLGLER 225
GR +PG + +IVD D + GE+ + Y + + + G
Sbjct: 342 KQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEK-TEELTRDG--- 397
Query: 226 YHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
WF + D+ I G+
Sbjct: 398 -------------WFRTGDVAVIDEDGY 412
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 53.4 bits (129), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 342 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
+ ++YTSG+ G K VMLSH N+T A I QY +L +++ LP S
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDR-ILAVLPFSF 54
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 53.8 bits (130), Expect = 1e-07
Identities = 52/208 (25%), Positives = 76/208 (36%), Gaps = 20/208 (9%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
G+ + + + +AF LGL +V ++ N PE + +GA G
Sbjct: 34 GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMA-IGAAQLAGLR---R 89
Query: 258 TTNSPEACL--HCLVTSDANI--CVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGV 313
T P L H V DA I +V+ +E+ L + A+ P LK ++ PD
Sbjct: 90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVD- 148
Query: 314 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 373
L+ L + L YT GT G K VM +H +I A
Sbjct: 149 -----LLAAAAKFGPAPLVAA---ALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQ-- 198
Query: 374 IQYFKLE-SAALSVISFLPLSHIAAQTV 400
IQ + E A + PLSH
Sbjct: 199 IQLAEWEWPADPRFLMCTPLSHAGGAFF 226
Score = 31.1 bits (71), Expect = 1.4
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 135 GAAPIS-TELKRYFLSLDI--PI-CEVFGMSECAGAHTVSAPDDFKLDGV------GRTI 184
GA+P+S L +++ PI + +G +E T D D GR
Sbjct: 289 GASPMSPVRLAE---AIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPT 345
Query: 185 PGTQTKIVDPD----EEGN-GEIC 203
PG + ++D D +G GEIC
Sbjct: 346 PGLRVALLDEDGREVAQGEVGEIC 369
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 51.9 bits (125), Expect = 5e-07
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 30/204 (14%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA---AGM------ 256
E +A V VA A L LGL++ V +G N SD A A AG
Sbjct: 41 ELDAAVNRVAAALLDLGLKKGDRVAALGHN------SD--AYALLWLACARAGAVHVPVN 92
Query: 257 YTTNSPEACLHCLVTSDANICVVEDD--KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVI 314
+ E + L S A +V+ E L L + G+ G +
Sbjct: 93 FMLTGEELA-YILDHSGARAFLVDPALAPTAEAALA-LLPVDTLILSLVLGGREAPGGWL 150
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACI 373
+ + E G A + +A ++ ++YTSGTE K ML+H + +CI
Sbjct: 151 DFADWAEAGSVAEPD------VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCI 204
Query: 374 IQYFKLESAALSVISFLPLSHIAA 397
+ + + + + + LPL H A
Sbjct: 205 VA-GDMSADDIPLHA-LPLYHCAQ 226
Score = 34.9 bits (81), Expect = 0.090
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 41/114 (35%)
Query: 158 FGMSECAGAHTVSAPDDF--KLDGVGRTIPGTQTKIVDPDEEGN-------GEICLKEYE 208
+G +E A TV P++ + GR + +T++V D++GN GEI
Sbjct: 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVV--DDDGNDVAPGEVGEIV----- 371
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPE---------WFYS-DLGAIYAGGF 252
R + + ++ PE WF+S DLG + G+
Sbjct: 372 ---------------HRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGY 410
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 51.5 bits (124), Expect = 5e-07
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 395
++YTSGT G K V+L+H N+ NA +++ ++ +A+ ++ LPL H+
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW-TASDVLLHALPLHHV 141
Score = 43.4 bits (103), Expect = 2e-04
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDG------VGR 182
R+ +SG+A + + + + E +GM+E A +S P LDG VG
Sbjct: 209 RLFVSGSAALPVPVLERWEERTGHTLLERYGMTETGMA--LSNP----LDGERRPGTVGL 262
Query: 183 TIPGTQTKIVDPD------EEGNGEICLK------EYEANVRTVAKAF 218
+PG + +IVD D GEI ++ EY A+AF
Sbjct: 263 PLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAF 310
Score = 30.3 bits (69), Expect = 2.4
Identities = 20/81 (24%), Positives = 32/81 (39%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
G + E +A +AKA L LGL V ++ + E+ L AGG A +
Sbjct: 8 GGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLN 67
Query: 258 TTNSPEACLHCLVTSDANICV 278
+ + L S ++ V
Sbjct: 68 PSYPAAELAYILSDSQPSLLV 88
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 50.7 bits (122), Expect = 1e-06
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ ++GA + + F I I E +G +EC+ +V+ P K VGR +PG +
Sbjct: 262 RLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321
Query: 189 TKIVDPD 195
+IV P+
Sbjct: 322 VRIVSPE 328
Score = 42.2 bits (100), Expect = 4e-04
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
+++TSG+EG K V+LSH N+ N I L + ++ LPL H
Sbjct: 149 VILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTED-VLLGALPLFH 197
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 49.9 bits (120), Expect = 2e-06
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSEC--AGAHTVSAPDDFKLDGVGRTIPG 186
RV L G AP+ EL R L + +GM+E T PDD + GR +PG
Sbjct: 211 RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPG 270
Query: 187 TQTKIVDPDEE-----GNGEICLK 205
+ +IVD D GE+ ++
Sbjct: 271 VEVRIVDDDGNDVPPGEEGELQVR 294
Score = 44.5 bits (106), Expect = 9e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 396
++ L+YTSGT G K VM +H+ + ++ L + ++ PL+HI
Sbjct: 93 DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPS-PLAHIT 147
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 50.0 bits (120), Expect = 2e-06
Identities = 42/187 (22%), Positives = 65/187 (34%), Gaps = 10/187 (5%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
+T +V D +E R +A A KLG+ + V ++ N P + G
Sbjct: 18 PDRTAVVYGDRR----YTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFG 73
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
AG + T + L S+A + V D + L + A K I+ E
Sbjct: 74 VPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFV-DQEFLSLAEEALALLST-KEIIDTE 131
Query: 306 GKPDKPG--VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
P + +L + L + +L YTSGT G K V+ +H
Sbjct: 132 IIVISPAAEDSEEGDYEDLLAGGDPDPLPIPP--DDEWDPISLNYTSGTTGNPKGVVYTH 189
Query: 364 DNITFNA 370
NA
Sbjct: 190 RGAYLNA 196
Score = 37.2 bits (87), Expect = 0.019
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 47/151 (31%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTV----------SAPDDFKL-- 177
RV +GA P +K+ L + V+G++E G TV A + +L
Sbjct: 285 RVMTAGAPPPPAVIKK-MEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKA 343
Query: 178 -DGVGRTIPGTQTKIVDP--------DEEGNGEI------CLKEYEANVRTVAKAFLKLG 222
GV R + + +VDP D + GEI +K Y N +AF
Sbjct: 344 RQGV-RYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF---- 398
Query: 223 LERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
A WF+S DL ++ G+
Sbjct: 399 -------------AGGWFHSGDLAVVHPDGY 416
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 49.4 bits (118), Expect = 3e-06
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 14/175 (8%)
Query: 81 RWIANYAKSTSLQHYMAYLEKNVSEPYTY-RLVRWLILSKVKQAMGLDRCRVSLSGAAPI 139
RW+ A + + LE +E T+ LV + + + + R L G + I
Sbjct: 172 RWLIEGATLRIVDKFNQLLEMIANERVTHISLVPTQLNRLLDEGGHNENLRKILLGGSAI 231
Query: 140 STELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFK-LDGVGRTIPGTQTKIVDPDEEG 198
L +PI +GM+E T + P+ VGR + G + KI ++EG
Sbjct: 232 PAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEG 291
Query: 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
+GEI +K + K +L G F WF + D+G + GF
Sbjct: 292 HGEIMVKG-----ANLMKGYLYQGELTP------AFEQQGWFNTGDIGELDGEGF 335
Score = 41.7 bits (98), Expect = 8e-04
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 314 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 373
S D + GR S ++ IAT L++TSGT G K V + N +A
Sbjct: 89 DSLDRIEAAGRYETSLSASFNMDQIAT-----LMFTSGTTGKPKAVPHTFRNHYASAVGS 143
Query: 374 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 419
+ ++S LPL HI+ ++ ++ + ATL DK
Sbjct: 144 KENLGFTEDDNWLLS-LPLYHISGLSI-LFRWLIEGATLRIVDKFN 187
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 48.7 bits (117), Expect = 4e-06
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
YTSG+ GA K VM++H N+ N I + F L+ +S+LPL H
Sbjct: 155 YTSGSTGAPKGVMVTHGNLLANLRAIARAFGLD-PDDVGVSWLPLYH 200
Score = 29.9 bits (68), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 179 GVGRTIPGTQTKIVDPD-----EEGN-GEICLK 205
GR +PG + +IVDP+ +G GEI ++
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVR 388
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 47.8 bits (114), Expect = 8e-06
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 14/196 (7%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+E + V +A A + G+ V I+ N E+ S L A G A + +P
Sbjct: 46 RELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPE 105
Query: 265 CLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELG 323
+ A++ V E L + V+ P L +V G D V+ +++L+
Sbjct: 106 IAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSDD-SVLGYEDLL--- 159
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
A + V I + ++YTSGT G K +L+H N+T A ++ +
Sbjct: 160 -AEAGPAHAPV--DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADIN- 215
Query: 384 LSVISFL--PLSHIAA 397
S + F+ PL HIA
Sbjct: 216 -SDVGFVGVPLFHIAG 230
Score = 34.4 bits (79), Expect = 0.14
Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 20/125 (16%)
Query: 112 VRWLILSKVKQAMGLD-RCRVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHT 168
+W + +QA D RV GAAP S L R + + I FG +E +
Sbjct: 274 AQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTC 333
Query: 169 VSAPDDF--KLDGVGRTIPGTQTKIVDPDEEGN-------GEIC------LKEYEANVRT 213
+ +D KL VG+ IP ++V DE N GEI + Y N
Sbjct: 334 MLLGEDAIRKLGSVGKVIPTVAARVV--DENMNDVPVGEVGEIVYRAPTLMSGYWNNPEA 391
Query: 214 VAKAF 218
A+AF
Sbjct: 392 TAEAF 396
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 46.9 bits (112), Expect = 2e-05
Identities = 58/211 (27%), Positives = 84/211 (39%), Gaps = 50/211 (23%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
+ E R VA KLG+ + V ++ N PE+ + LGA G TT +P
Sbjct: 55 DVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVT----TTANP--- 107
Query: 266 LHCLVTSDANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQYEGKP----DKP--GVI 314
T A I KQ + I+ KLK + + +G D P G +
Sbjct: 108 ---FYTP-AEIA-----KQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCL 158
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN-ITFNAACI 373
+ EL + A + L V I+ ++ L Y+SGT G K VML+H +T +
Sbjct: 159 HFSELTQ----ADENELPEV--EISPDDVVALPYSSGTTGLPKGVMLTHKGLVT----SV 208
Query: 374 IQ---------YFKLESAALSVISFLPLSHI 395
Q YF + L V LP+ HI
Sbjct: 209 AQQVDGENPNLYFHSDDVILCV---LPMFHI 236
Score = 33.4 bits (77), Expect = 0.29
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 31/114 (27%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIP---ICEVFGMSECAGAHTVSA--------PDDFKLD 178
R+ LSGAAP+ EL+ F + +P + + +GM+E A V A P K
Sbjct: 301 RMVLSGAAPLGKELEDAFRA-KLPNAVLGQGYGMTE---AGPVLAMCLAFAKEPFPVKSG 356
Query: 179 GVGRTIPGTQTKIVDPDEEGN------GEICL------KEY----EANVRTVAK 216
G + + KIVDP+ + GEIC+ K Y EA T+ K
Sbjct: 357 SCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDK 410
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 46.8 bits (112), Expect = 2e-05
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 274
A +LG+E+ V I PE +++ LGA+ G ++ EA L S+A
Sbjct: 87 ANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEA 146
Query: 275 NICVVEDDKQLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDELMELGRAAPDESLDR 333
+ ++ LE+ K P LK ++ E + PG + ++ LME A DE
Sbjct: 147 KV-LITTPALLER--KPADDLPSLKHVLLVGEDVEEGPGTLDFNALME---QASDE---- 196
Query: 334 VLETIATN--ECCTLVYTSGTEGASKPVMLSHD 364
+ T+ + L YTSG+ G K V+ H+
Sbjct: 197 -FDIEWTDREDGAILHYTSGSTGKPKGVLHVHN 228
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 46.8 bits (112), Expect = 2e-05
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 259 TNSPEACLHCLVTSDANI-CVVEDDKQLEKILKVK---AQCPKLKAIVQYEGKPDKPGVI 314
T S A + A I V+ K LEK LK K + P+ ++ E K
Sbjct: 698 TASEAALKSAI--EQAQIKTVITSRKFLEK-LKNKGFDLELPENVKVIYLEDLKAKIS-- 752
Query: 315 SWDELMELGRA--APDESLDR-VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 371
D+L L A P L R T ++ T++++SG+EG K VMLSH NI N
Sbjct: 753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIE 812
Query: 372 CIIQYFKLESAALSVISFLPLSH 394
I F L + ++S LP H
Sbjct: 813 QISDVFNLRNDD-VILSSLPFFH 834
Score = 46.8 bits (112), Expect = 3e-05
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 119 KVKQAMGLDRCRVSLSGAAPISTELKRYF-LSLDIPICEVFGMSECAGAHTVSAPD---- 173
K+ M R+ ++GA + E+ F I I E +G +E + +V+ PD
Sbjct: 891 KLHPLM-FASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAA 949
Query: 174 ------DFKLDGVGRTIPGTQTKIVDPD 195
K VG +PG +IVDP+
Sbjct: 950 DFKRQTGSKEGSVGMPLPGVAVRIVDPE 977
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 46.4 bits (110), Expect = 3e-05
Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 32/227 (14%)
Query: 202 ICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
I +E + V A L +L L++ V ++ N ++ + G + AG +
Sbjct: 51 ITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLY 110
Query: 261 SPEACLHCLVTSDANICVVEDD--KQLEKIL---KVKA----------QCPK---LKAIV 302
+P H L+ S A++ VV D+ +++++ VK PK + +V
Sbjct: 111 TPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVV 170
Query: 303 QYEGK--PDK--PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358
+Y K P+ G I + E + LGR +L I ++ L YT GT G +K
Sbjct: 171 KYVKKLVPEYRINGAIRFREALALGRKHSMPTLQ-----IEPDDIAFLQYTGGTTGVAKG 225
Query: 359 VMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVD 401
ML+H N+ N Q+ KLE VI+ LPL HI A T +
Sbjct: 226 AMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTAN 272
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 45.6 bits (109), Expect = 5e-05
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 319 LMELGRAAPD--ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
L+E AAPD E++ R + +A ++YTSGT G SK MLSH N+ NA ++ Y
Sbjct: 137 LLEAAAAAPDDFETVPRGADDLAA-----ILYTSGTTGRSKGAMLSHGNLLSNALTLVDY 191
Score = 32.2 bits (74), Expect = 0.69
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDG------VGR 182
R+ +SG+AP+ E R F I E +GM+E +T S P DG VG
Sbjct: 272 RLFISGSAPLLAETHREFQERTGHAILERYGMTE-TNMNT-SNP----YDGERRAGTVGF 325
Query: 183 TIPGTQTKIVDPD---EEGNGEI 202
+PG ++ DP+ E GEI
Sbjct: 326 PLPGVSLRVTDPETGAELPPGEI 348
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 45.3 bits (108), Expect = 5e-05
Identities = 60/264 (22%), Positives = 96/264 (36%), Gaps = 41/264 (15%)
Query: 196 EEGNGE---ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 252
G GE + E VR +A+A L LGL + I+ N+ E L A+YAG
Sbjct: 17 RRGGGEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVP 76
Query: 253 AAGMYTTNSPEACLHCLVTSD-------ANIC-----VVEDDKQLEKILKVKAQCPKLKA 300
A + S L++ D ++ ED + L A
Sbjct: 77 VAPVSPAYS-------LLSKDFAKLRHIFDLLTPGAVFAEDGAAFARAL---AALGLAGV 126
Query: 301 IVQYEGKPDKPGVISWDELMEL-GRAAPDESLDRVL-ETIATNECCTLVYTSGTEGASKP 358
V I++ L+ AA D + V +T+A ++TSG+ G K
Sbjct: 127 PVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAK-----YLFTSGSTGLPKA 181
Query: 359 VMLSHDNITFNAACIIQYFKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
V+ +H + N A I Q + + V+ +LP +H + V+ TL+ D
Sbjct: 182 VINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDG 241
Query: 418 NALKVYKATQAAIDR--ANLKSIS 439
K + NL+ +S
Sbjct: 242 ------KPVPGLFEETLRNLREVS 259
Score = 34.9 bits (81), Expect = 0.11
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 49 AAQYPDQVALCQKQENGEWKKVTY 72
A + PD+V L +++ GEW++VTY
Sbjct: 5 ARETPDRVFLAERRGGGEWRRVTY 28
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 45.6 bits (108), Expect = 5e-05
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
P + + + + GR + + L+ IA L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVPFKQALRQGRGLSLKPVPVGLDDIAV-----LQYTGGTTGLAKGAMLTHGNLVANM 236
Query: 371 ----ACIIQYFK-----LESAALSVISFLPLSHIAAQTVDIYSVM 406
AC+ Q ++ +I+ LPL HI A T + +M
Sbjct: 237 LQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM 281
Score = 29.0 bits (65), Expect = 6.7
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Query: 154 ICEVFGMSECAG-AHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGN-------GEICLK 205
I E +G++E + A T + +L VG +PGT K++ D++GN GE+C+K
Sbjct: 361 IVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVI--DDDGNELPLGERGELCIK 418
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 45.1 bits (107), Expect = 7e-05
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 38/158 (24%)
Query: 273 DANICVVEDDKQ-LEKILKVKAQCPKL-KAIVQY----EGKPDKPGVISWDELMELGRAA 326
D ++ +E DK+ LEKI +K + KL +I+ + + K + + D
Sbjct: 252 DISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDP-------- 303
Query: 327 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-----CIIQYFKLES 381
+ ++VYTSGT G K VMLS+ N+ I + + ++
Sbjct: 304 --------------DFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKT 349
Query: 382 AALSVISFLPLSHIAAQTVDIYSVM-TVAATLWFADKN 418
+S+LP+SHI + + S M +W D N
Sbjct: 350 H----LSYLPISHIYERVIAYLSFMLGGTINIWSKDIN 383
Score = 30.5 bits (69), Expect = 2.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 461 LGPTMKVKRPFVVKKYQSIIDK 482
L PT KVKR +V K Y ID+
Sbjct: 717 LTPTFKVKRFYVFKDYAFFIDQ 738
Score = 29.3 bits (66), Expect = 4.9
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 131 VSLSGAAPISTELKRYF-LSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTI-PGTQ 188
V L+G +S ++ + L++ + +G++E G V DD + +G I P T+
Sbjct: 465 VILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTK 524
Query: 189 TKIV 192
K+
Sbjct: 525 YKVR 528
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 45.0 bits (107), Expect = 7e-05
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
GV++W E + G A P + ++ L YTSGT G K M +H +
Sbjct: 164 LAPGGVVAWKEALAAGLAPPPHTAGP-------DDLAVLPYTSGTTGVPKGCMHTHRTVM 216
Query: 368 FNAACIIQYFKL--ESAALSVISFLPLSHI 395
NA + + ES L+V LPL H+
Sbjct: 217 ANAVGSVLWSNSTPESVVLAV---LPLFHV 243
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 44.8 bits (106), Expect = 7e-05
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 122 QAMGLDRCRVSLSGA-APISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGV 180
+ + +++LSG A +R+ ICE +GM+E + +V+ ++ +
Sbjct: 321 RKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTI 380
Query: 181 GRTIPGTQTKIVDPDEEGN-------GEICLK 205
G +P T K++D D GN GE+C+K
Sbjct: 381 GIPVPSTLCKVIDDD--GNELPLGEVGELCVK 410
Score = 42.4 bits (100), Expect = 4e-04
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
P + +++ + G P + + +A L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVKFNDALAKGAGQPVTEANPQADDVAV-----LQYTGGTTGVAKGAMLTHRNLVANM 236
Query: 371 ACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVM 406
L +I+ LPL HI A T ++M
Sbjct: 237 LQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMM 274
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 44.7 bits (106), Expect = 8e-05
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 285 LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE-------- 336
++ IL ++ Q P+L+ IV DK L A SL +++
Sbjct: 137 VDLILPLQNQLPQLQQIVGV----DK-----------LAPATSSLSLSQIIADYEPLTTA 181
Query: 337 -TIATNECCTLVYTSGTEGASKPVMLSHDNITF 368
T +E +++TSGTEG K VML+H+NI
Sbjct: 182 ITTHGDELAAVLFTSGTEGLPKGVMLTHNNILA 214
Score = 35.1 bits (81), Expect = 0.081
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD-----FKLDGVGRTI 184
R L G I ++ R I + V+G +E + H V DD D G
Sbjct: 305 RFFLCGGTTIPKKVARECQQRGIKLLSVYGSTE-SSPHAVVNLDDPLSRFMHTD--GYAA 361
Query: 185 PGTQTKIVDPD 195
G + K+VD
Sbjct: 362 AGVEIKVVDEA 372
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 44.3 bits (105), Expect = 1e-04
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 307 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 366
K P IS+ + GR + V + + L YT GT G +K ML+H N+
Sbjct: 177 KYHLPDAISFRSALHKGR-----RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNM 231
Query: 367 TFN--AACIIQYFKLESAALSVISFLPLSHIAAQTVD 401
N A L V++ LPL HI A TV+
Sbjct: 232 LANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVN 268
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 43.8 bits (104), Expect = 1e-04
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 404
+++TSGT G K V L+H N+ +A I + KL + + ++ +PL HI V + +
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDRCLNVMPLFHIHGLIVSLLA 64
Score = 39.1 bits (92), Expect = 0.004
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 39/137 (28%)
Query: 134 SGAAPIS----TELKRYFLSLDIPICEVFGMSECAGAHTVS--APDDFKLDGVGRTIPGT 187
S +AP+ L++ F +P+ E +GM+E A + P K VGR G
Sbjct: 125 SASAPLPPAVLDRLEKRF---GVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPA-GV 180
Query: 188 QTKIVDPD----EEG-NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNA 236
+ I+D D G GEI ++ Y N + + G
Sbjct: 181 EVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNN-PEANREAFRDG-------------- 225
Query: 237 PEWFYS-DLGAIYAGGF 252
WF + DLG + G+
Sbjct: 226 --WFRTGDLGYLDEDGY 240
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 44.1 bits (105), Expect = 1e-04
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 23/170 (13%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---SP 262
E E +A + GL V I N E+ + LGA A A N
Sbjct: 33 ELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR---AVPVNVNYRYVE 89
Query: 263 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDEL 319
+ + L SDA + +V + + ++ +V + PKL+ +V E G PG + +++
Sbjct: 90 DELRYLLDDSDA-VALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDA 148
Query: 320 MELGRAAPD---ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 366
+ G D S D + L+YT GT G K VM ++I
Sbjct: 149 LAAGSPERDFGERSPDDLY----------LLYTGGTTGMPKGVMWRQEDI 188
Score = 30.6 bits (70), Expect = 1.9
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 134 SGAAPISTELKRYFLSL--DIPICEVFGMSEC-AGAHTVSAPDDFKLDGVGRTIPGTQTK 190
SG A S +K L L ++ + + G SE G A G R G +T
Sbjct: 303 SGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGAVH-TGGPRFTIGPRTV 361
Query: 191 IVDPD----EEGNGEI 202
++D D E G+GEI
Sbjct: 362 VLDEDGNPVEPGSGEI 377
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 43.9 bits (104), Expect = 1e-04
Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 17/204 (8%)
Query: 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 274
A F LG+ + V + N PE+ + G G + E L S A
Sbjct: 51 ANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQA 110
Query: 275 NICVVEDD--KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 332
++ V +I + A + + P GV S+ +L +
Sbjct: 111 SLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVSSFTQL--KAQQPATLCYA 167
Query: 333 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS----VIS 388
L T T E +++TSGT K V+++H N+ F Y+ AL ++
Sbjct: 168 PPLSTDDTAE---ILFTSGTTSRPKGVVITHYNLRFAG-----YYSAWQCALRDDDVYLT 219
Query: 389 FLPLSHIAAQTVDIYSVMTVAATL 412
+P HI Q + + AT
Sbjct: 220 VMPAFHIDCQCTAAMAAFSAGATF 243
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 43.9 bits (103), Expect = 2e-04
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG---MY 257
+I + V+ A KLG+E+ V I+ N P+ G + AGG +Y
Sbjct: 49 DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLY 108
Query: 258 TTNSPEACLH--------CLVTSDANICVVEDDKQLEKIL--KVKAQCPKLKAIVQYEGK 307
T E LH CL + V+ ++E ++ ++ P K ++ +
Sbjct: 109 TERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQ 168
Query: 308 PDKPGVI---SWDELMELGRAAPDESLDRVLETIA--TNECCTLVYTSGTEGASKPVMLS 362
+ ++ S E + L + E ++ +E N+ L YT GT G K VML+
Sbjct: 169 KKQSNLVVKVSESETIHLWNSVEKE-VNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLT 227
Query: 363 HDNITFNAACIIQY-FKLESAALSVISFLPLSHIAAQT 399
H N+ N +Q+ + + V+ LP H+ T
Sbjct: 228 HKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMT 265
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 43.6 bits (103), Expect = 2e-04
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268
ANV + A GL+R V +I PEW+ ++ I G + + L+
Sbjct: 55 ANVLSGA-----CGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYR 109
Query: 269 LVTSDANICVVEDDKQLEKILKVKAQCPKL--KAIVQYEGKPDKPGVISWDELMELGRAA 326
L S A C+V D+ + + ++CP L K +V + W EL + A
Sbjct: 110 LQASKAK-CIVTSDELAPAVDSIASECPSLKTKLLVSEHSRD------GWLNFKELLKEA 162
Query: 327 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
E ++T + E + +TSGT G K SH
Sbjct: 163 STEH--TCVKT-KSQEPMAIYFTSGTTGFPKMAEHSH 196
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 43.3 bits (102), Expect = 2e-04
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 21/189 (11%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
G +T +D + E EA VR + A +LG++R V ++ + ++ + LG
Sbjct: 19 GGKTAFIDD----ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG 74
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
AI AG + T + + + L S A + V + L I + P L+ V
Sbjct: 75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGE-LLPVIKAALGKSPHLEHRVVVG 133
Query: 306 GKPDKPGVISWDELM----ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 361
G + EL+ E + A ++ ++ +Y+SG+ G K V+
Sbjct: 134 RPE--AGEVQLAELLATESEQFKPAATQA----------DDPAFWLYSSGSTGMPKGVVH 181
Query: 362 SHDNITFNA 370
+H N + A
Sbjct: 182 THSNPYWTA 190
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 43.4 bits (103), Expect = 2e-04
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
RV S P++ E +F S L + I +++G +E P K G +PG
Sbjct: 293 RVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYA 351
Query: 189 TKIVDPDEE----GNGEICLK 205
+ VD + G GE+ ++
Sbjct: 352 VRRVDDEGNPVPPGVGELVVR 372
Score = 43.0 bits (102), Expect = 3e-04
Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 9/173 (5%)
Query: 191 IVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 250
I D ++ E+ + V +A A LG + V I N+PE + L G
Sbjct: 30 IFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIG 89
Query: 251 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK 310
A + S EA + ++ DD K A A++ +
Sbjct: 90 AIPAVVSPGLSAEAVADRIADLGPK-VLIADDGTFRNG-KEIALLEDADAVLSSVVVVPR 147
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
G+ + + + E L ++ L+YTSGT G K ++ SH
Sbjct: 148 LGLWYDEAVEKASEKFEFEPLPA-------DDPLFLLYTSGTTGKPKGIVHSH 193
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 42.3 bits (100), Expect = 4e-04
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
+ YTSGT G K M +H + AA + L ++ + +FLPL H+A + +
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLL-AFLPLFHVAGMQGSMNAP 147
Query: 406 MTVAATL 412
+ ATL
Sbjct: 148 IYTGATL 154
Score = 40.4 bits (95), Expect = 0.002
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 26/110 (23%)
Query: 156 EVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD--EE----GNGEIC------ 203
E +G++E + PD K +G + GT +++DP+ EE GEI
Sbjct: 229 EGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQV 288
Query: 204 LKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
K Y A++F++L +R +F + DLG I G+
Sbjct: 289 FKGYWNRPEATAESFIELDGKR-------------FFRTGDLGYIDEEGY 325
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 42.3 bits (100), Expect = 5e-04
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
PG + W+ L + A + D ++ ++YTSGT G K L+H N+ NA
Sbjct: 191 PGTVPWETL--VDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANA 248
Query: 371 A 371
A
Sbjct: 249 A 249
Score = 28.4 bits (64), Expect = 9.6
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 121 KQAMGLDRCRVSLSGAAPISTELKRYFLSLDIP-ICEVFGMSECAGAHTVSAP--DDFKL 177
++ + L R + SGA + + L + E +G++E + V P DD +
Sbjct: 330 ERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPI-IVGNPMSDDRRP 388
Query: 178 DGVGRTIPGTQTKIVDPD 195
VG P T+ +IVDP+
Sbjct: 389 GYVGVPFPDTEVRIVDPE 406
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 42.0 bits (99), Expect = 6e-04
Identities = 46/232 (19%), Positives = 87/232 (37%), Gaps = 14/232 (6%)
Query: 193 DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 252
+P ++ E + V +A+A L LGL+ V I+ N+ E L A+ AG
Sbjct: 72 EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVP 131
Query: 253 AAGM---YTTNSPE-ACL-HCLVTSDANICVVEDDKQLEKILK-VKAQCPKLKAIVQYEG 306
AA + Y+ S + A L H + + + L + + V G
Sbjct: 132 AAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTV---VHVTG 188
Query: 307 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 366
+ I++ +L P ++ + I + ++TSG+ G K V+ + +
Sbjct: 189 PGEGIASIAFADLAA---TPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMM 245
Query: 367 TFNAACIIQYF-KLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
N A Q + V + ++P +H + ++ TL+ D
Sbjct: 246 CANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 5 RPNQILDSDLLYTTEPHG----RTRIHLGEAGVAAQPPISVPGLLGRTAAQYPDQVALCQ 60
RP D+ G ++R LG P S+P LL + AA+ PD+ L Q
Sbjct: 17 RPLNWKPPDISVERRADGSIVIKSRHPLGP------YPRSIPHLLAKWAAEAPDRPWLAQ 70
Query: 61 -KQENGEWKKVTY---KLQTTGVKRWI 83
+ +G+W+KVTY K + + +
Sbjct: 71 REPGHGQWRKVTYGEAKRAVDALAQAL 97
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 41.8 bits (98), Expect = 7e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 130 RVSLSGAAPISTEL-KRYFLSLDIPICEVFGMSECAGAHTVSAPDD-FKLDGV--GRTIP 185
L API L +R + L I +GM+E GA TV+ PDD + GR +P
Sbjct: 313 FTFLCAGAPIPGILVERAWELLGALIVSAWGMTEN-GAVTVTEPDDALEKASTTDGRPLP 371
Query: 186 GTQTKIVDPD 195
G + K++D +
Sbjct: 372 GVEVKVIDAN 381
Score = 29.9 bits (67), Expect = 3.8
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
L+YTSGT G K VM + + + N + +LE VI L S +A QT +Y +
Sbjct: 200 LIYTSGTTGEPKGVMHTANTLFSNIHPYAE--RLELGGGDVI--LMASPMAHQTGFMYGL 255
Query: 406 M 406
M
Sbjct: 256 M 256
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 41.4 bits (98), Expect = 8e-04
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 111 LVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTV 169
L WL ++ QA L RV G AP+S EL R L P+ +VFGM+E G
Sbjct: 240 LNLWLEAAEWDQA-DLSSLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--GLVNY 296
Query: 170 SAPDD---FKLDGVGRTI-PGTQTKIVDPD----EEGN-GEIC 203
+ DD + GR I P + +IVD G GE+
Sbjct: 297 TRLDDPPDVIMRTQGRPISPADEIRIVDDQGEPVPPGEVGELL 339
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 41.3 bits (98), Expect = 0.001
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
++YTSG+ G K VM+ H + A + + + L +A V+ F S A+ +I+
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGL-TAGDRVLQFASFSFDASVW-EIFPP 155
Query: 406 MTVAATLWFADKNALK 421
+ ATL A L+
Sbjct: 156 LLSGATLVLAPPEVLR 171
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 40.7 bits (96), Expect = 0.002
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 37/113 (32%)
Query: 264 ACLHCLVTS---DANICVVEDDK-QLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDE 318
A L L+ + I +ED + Q+ K+K +V + PD P VI
Sbjct: 743 ARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVI---- 798
Query: 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 371
++TSG+EG K V+LSH N+ N A
Sbjct: 799 ----------------------------LFTSGSEGTPKGVVLSHRNLLANRA 823
Score = 29.9 bits (68), Expect = 3.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 130 RVSLSGAAPISTELKR-YFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R +GA + E ++ + I I E +G++E A ++ P K VGR +PG +
Sbjct: 910 RYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIE 969
Query: 189 TKI 191
++
Sbjct: 970 YRL 972
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 40.3 bits (95), Expect = 0.002
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 34/115 (29%)
Query: 332 DRVLETIATNECCTLV----------YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
+R+ + + LV +TSG+ G K V +SH N+ +++ F L
Sbjct: 78 ERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE 137
Query: 382 AA-----------LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKA 425
LSV D++ + ATL+ K + A
Sbjct: 138 GDVFSNQAPFSFDLSVF-------------DLFPALASGATLYVIPKEQIADPLA 179
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 40.2 bits (95), Expect = 0.002
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 301 IVQYEGKPDKPGVISWDELME-LGRAAPDESLDRV-LETIATNECCTLVYTSGTEGASKP 358
+V G + L+ AA D + V +TIA ++TSG+ G K
Sbjct: 172 VVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAK-----FLFTSGSTGLPKA 226
Query: 359 VMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSH 394
V+ +H + N + Q F L ++ +LP +H
Sbjct: 227 VINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNH 263
Score = 36.8 bits (86), Expect = 0.023
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 5 RPNQILDSDLLYTTEPHG----RTRIHLGEAGVAAQPPISVPGLLGRTAAQYPDQVALCQ 60
RP + G R+ LG+ P + L A + PD+V L +
Sbjct: 7 RPVAFAPPAVEVERRADGTIYLRSAEPLGDY------PRRLTDRLVHWAQEAPDRVFLAE 60
Query: 61 KQENGEWKKVTY 72
+ +G W+++TY
Sbjct: 61 RGADGGWRRLTY 72
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 40.4 bits (95), Expect = 0.002
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 349 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
TSG+ G+ K V ++H N+ NA + + + ++S+LPL H
Sbjct: 160 TSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 40.0 bits (94), Expect = 0.002
Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 23/191 (12%)
Query: 187 TQTKIVDPDE----EGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242
Q PD G+ +E +A V +A A G+ + + + N + F S
Sbjct: 14 RQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFES 73
Query: 243 DLGAIYAGGFAAGMYTTN---SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLK 299
A G TN +P+ + S A + D E V+A P L
Sbjct: 74 MFAAFRLGAVWV---PTNFRQTPDEVAYLAEASGARAMICHADFP-EHAAAVRAASPDLT 129
Query: 300 AIVQYEGKPDKPGVISWDELM--ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357
+V G + L+ LG + ++D ++ C +TSGT G K
Sbjct: 130 HVVAIGGARAGLDY---EALVARHLGARVANAAVDH-------DDPCWFFFTSGTTGRPK 179
Query: 358 PVMLSHDNITF 368
+L+H + F
Sbjct: 180 AAVLTHGQMAF 190
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 40.0 bits (94), Expect = 0.003
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 68 KKVTYKLQTTG-VKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGL 126
K V KL G +KR + ++A + L L++ PY V S + +G
Sbjct: 377 KAVEAKLPPVGSLKRRVFDHAYQSRL----RALKEGKDTPYWNEKV----FSAPRAVLG- 427
Query: 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSE--CAGAHTVSAPDDFKLDGVGRTI 184
R R LSG P+S + + + + + +G++E C G + D + + VG+ +
Sbjct: 428 GRVRAMLSGGGPLSAATQEFVNVVFGMVIQGWGLTETVCCGG--IQRTGDLEPNAVGQLL 485
Query: 185 PGTQTKIVDPDE-------EGNGEICLK 205
G + K++D +E E GEI L+
Sbjct: 486 KGVEMKLLDTEEYKHTDTPEPRGEILLR 513
Score = 40.0 bits (94), Expect = 0.003
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 313 VISWDELMELGRAAPDESLDRVLETIATN--ECCTLVYTSGTEGASKPVMLSHDNITFNA 370
+++W +++ G +A I N + ++YTSGT G K VM +H ++T
Sbjct: 238 LVAWTDVVAKGHSA----GSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGI 293
Query: 371 ACIIQYF-----KLESAALSVISFLPLSHI 395
+ E + S+LPL+HI
Sbjct: 294 LALEDRLNDLIGPPEEDE-TYCSYLPLAHI 322
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 39.6 bits (93), Expect = 0.003
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
PG + +++ + G + V + ++ L YT GT G SK L H NI N
Sbjct: 179 PGHVRFNDALAEGARQ---TFKPV--KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANV 233
Query: 371 ACIIQYFKLESA--------ALSVISFLPLSHIAAQTVDIYSVMTVAA 410
+ + L+ A L+ + LPL HI A TV ++ +
Sbjct: 234 LQMEAW--LQPAFEKKPRPDQLNFVCALPLYHIFALTVC--GLLGMRT 277
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 39.5 bits (93), Expect = 0.003
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
++YTSG+ G K V+++H ++ A + + + L+ V+ F LS A+ +I+
Sbjct: 125 VIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDD-RVLQFASLSFDASVE-EIFGA 182
Query: 406 MTVAATLWFADKNALK 421
+ ATL ++ +
Sbjct: 183 LLAGATLVVPPEDEER 198
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 135 GAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDP 194
G A +S L + +L +P+ E +G+SECA +++ P + VG+ +P Q I +
Sbjct: 245 GGARVSPSLLQRARALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSIAN- 303
Query: 195 DEEGNGEI 202
+GEI
Sbjct: 304 ----DGEI 307
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 38.9 bits (91), Expect = 0.006
Identities = 38/198 (19%), Positives = 55/198 (27%), Gaps = 40/198 (20%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+E VA F G V + N E+ LG G A + + E+
Sbjct: 7 RELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRLES 66
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
LHC+ S A + L +P
Sbjct: 67 LLHCITVSKAKALIFNLLDPLLT------------------QSSTEPPSQ---------- 98
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
D + L +YTSGT G K ++ H AA F + +
Sbjct: 99 --DDVNFRDKL---------FYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDV 147
Query: 385 SVISFLPLSHIAAQTVDI 402
LPL H A + +
Sbjct: 148 VYDC-LPLYHSAGGIMGV 164
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 38.6 bits (90), Expect = 0.007
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
++ + +A K L + + + G P + LG+I +G
Sbjct: 29 QQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG-------------- 74
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
H + D +I +++E I++ A + + +I+ L +
Sbjct: 75 --HAYIPVDTSIPS----ERIEMIIEA-AGPELVIHTAELSIDAVGTQIITLSALEQAET 127
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+ S D + ++ ++YTSG+ G K V +SHDN+ ++ F L
Sbjct: 128 SGGPVSFD---HAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSE-GK 183
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQAAIDRANL 435
++ P S +D+Y + TL DK+ +K + + L
Sbjct: 184 QFLNQAPFS-FDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGL 233
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 38.4 bits (90), Expect = 0.008
Identities = 44/175 (25%), Positives = 57/175 (32%), Gaps = 70/175 (40%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSLDIP-------ICEVFGMSE-CAG---AHTVSAPDD 174
L R ++ + + R FL L P I FGMSE C+G + D
Sbjct: 288 LSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPD 347
Query: 175 ------FKLDG-----------------VGRTIPGTQTKIVDPD----EEG-------NG 200
L G +GR IPG +IVD D EG G
Sbjct: 348 TGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRG 407
Query: 201 EICLKEY----EANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAG 250
Y EAN A+AF + G WF + DLG ++ G
Sbjct: 408 PTVTSGYYRNPEAN----AEAFTEDG----------------WFRTGDLGFLHDG 442
Score = 37.3 bits (87), Expect = 0.020
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 397
L+ TSG+ G K V+L+H NI +A +Q +S+ +++PL H+
Sbjct: 172 LLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSL-NWMPLDHVGG 222
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 38.1 bits (89), Expect = 0.009
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
D A PD D + L++TSGT G K V +H + + Q
Sbjct: 141 DAEPPFRVADPD---DLFM----------LIFTSGTSGDPKAVRCTHRKVASAGVMLAQR 187
Query: 377 FKLESAALSVISFLPLSHIAA 397
F L + +S +PL H A
Sbjct: 188 FGLGPDDVCYVS-MPLFHSNA 207
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 37.9 bits (88), Expect = 0.012
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRT 183
L R +G AP EL R F+ + FGM+E + + + +D K+ +G+
Sbjct: 263 LQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKP 322
Query: 184 IPGTQTKIVDPDEE--GNGEI 202
+ +++D ++ GE+
Sbjct: 323 VLFCDYELIDENKNKVEVGEV 343
Score = 33.3 bits (76), Expect = 0.32
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 395
YTSGT G K +L+ +N+ +NA L S I LPL HI
Sbjct: 156 YTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRS-IVLLPLFHI 202
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 37.9 bits (88), Expect = 0.013
Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 39/227 (17%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAP---EWFYSDLGAIYAGGFAA 254
GN E+ V ++A L+LGL V I N+ EW L AGG A
Sbjct: 29 GNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWL---LAVACAGGIVA 85
Query: 255 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV-----QYEGKPD 309
+ S E ++ + V ++ + P L V
Sbjct: 86 PLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF 145
Query: 310 KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 369
++ + L + LD A ++ + +TSGT G K V +SH
Sbjct: 146 LNSFLTTEMLKQRALGTT--ELDYAW---APDDAVLICFTSGTTGRPKGVTISH------ 194
Query: 370 AACIIQYFKLESAALSVISF---------LPLSHIAAQTVDIYSVMT 407
+A I+Q A ++++ + PL HI + S +
Sbjct: 195 SALIVQSL----AKIAIVGYGEDDVYLHTAPLCHIGG----LSSALA 233
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 36.8 bits (86), Expect = 0.022
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E+ A A A LG+++ V ++ N PE+ + L G AA + TT E
Sbjct: 7 AEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQRGEV 66
Query: 265 CLHCLVTSDANICVVE 280
HC+ SDA +V+
Sbjct: 67 LAHCINVSDARAVIVD 82
Score = 34.1 bits (79), Expect = 0.15
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVI-SFLPLSHIAAQTVDI 402
+YTSGT G K ++SH A L V+ LPL H A TV
Sbjct: 84 AFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLL--KPDDVLYLCLPLYHSNALTVGW 141
Query: 403 YSVMTVAATL 412
S + A+L
Sbjct: 142 SSALAAGASL 151
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 37.1 bits (86), Expect = 0.023
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDI 402
++YTSG+ G K V +SH + N C+I +L + S++ + T +
Sbjct: 659 AYVIYTSGSTGQPKGVAISHGALA-NYVCVIAERLQLAADD-SMLMVSTFAFDLGVTE-L 715
Query: 403 YSVMTVAATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQKFEFLPADF 454
+ + ATL A D ++ Q + + +P+
Sbjct: 716 FGALASGATLHLLPP---------DCARDAEAFAALMADQGVTVLKIVPSHL 758
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 36.9 bits (86), Expect = 0.026
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 107 YTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIP-------ICEVFG 159
+ Y+ + ++ L R+ +GA PIS +L FL P + V+G
Sbjct: 208 FGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYG 267
Query: 160 MSE-CAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEI 202
++E + FK + R KI++ D + + I
Sbjct: 268 LAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAI 311
Score = 36.5 bits (85), Expect = 0.033
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 328 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS-- 385
+SL + + IA + ++SG+ G K V+L+H N+ N II E+A ++
Sbjct: 98 RDSLLSLPDDIAF-----IQFSSGSTGEPKGVILTHKNLLTNIEAII-----EAAEITSE 147
Query: 386 --VISFLPLSH 394
+S++PL+H
Sbjct: 148 DVFLSWMPLTH 158
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 36.5 bits (85), Expect = 0.029
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQ-YF----KLESAALSVISFLPLSH 394
L YTSG+ VM+SH N+ N ++ YF + +V+S+LP H
Sbjct: 165 LQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 36.7 bits (85), Expect = 0.032
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 281 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 340
D + +L V L + + + P ++ D L A E+ +
Sbjct: 113 ADAEPRLLLTVADLRDSLLQMEELAA-ANAPELLCVDTL----DPALAEAWQEP--ALQP 165
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVI-SFLPLSH 394
++ L YTSG+ K V +SH N+ N I F ++ VI S+LPL H
Sbjct: 166 DDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYH 220
Score = 32.4 bits (74), Expect = 0.71
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
L+YTSG+ G K V++SH I + +I+ F + +
Sbjct: 2338 LIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRA 2373
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 36.6 bits (85), Expect = 0.032
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 130 RVSLSGAAPISTEL-KRYFLSLDIPICEVFGMSECAGAHTVSAPDD-----FKLDGVGRT 183
R L API L +R +L I +GM+E GA T++ DD DG
Sbjct: 315 RTFLCAGAPIPGALVERARAALGAKIVSAWGMTEN-GAVTLTKLDDPDERASTTDG--CP 371
Query: 184 IPGTQTKIVDPD 195
+PG + ++VD D
Sbjct: 372 LPGVEVRVVDAD 383
Score = 33.1 bits (76), Expect = 0.37
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 296 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT------NECCTLVYT 349
P L+ +V G G S++ L+ P + I ++ L+YT
Sbjct: 154 PALRHVVVVGGD----GADSFEALL----ITPAWEQEPDAPAILARLRPGPDDVTQLIYT 205
Query: 350 SGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 406
SGT G K VM + + + N + +L A VI L S +A QT +Y +M
Sbjct: 206 SGTTGEPKGVMHTANTLMANIVPYAE--RLGLGADDVI--LMASPMAHQTGFMYGLM 258
>gnl|CDD|217463 pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal
region. Within the NapC/NirT family of cytochrome c
proteins, some members, such as NapC and NirT, bind four
haem groups, while others, such as TorC, bind five
haems. This family aligns the common N-terminal region
that contains four haem-binding C-X(2)-CH motifs.
Length = 174
Score = 35.0 bits (81), Expect = 0.035
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHC 268
LG ++ GGF + TN+ E C+ C
Sbjct: 18 LGVVFWGGFNTALEATNTEEFCISC 42
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 36.2 bits (84), Expect = 0.039
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 23/220 (10%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTNS-- 261
++ E + +A+A LG+E V + +N Y L A Y G A +T N
Sbjct: 43 RDCERRAKQLAQALAALGVEPGDRVGTLAWNG----YRHLEAYYGVSGSGAVCHTINPRL 98
Query: 262 -PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG----VISW 316
PE + +V + V+ D L + + QCP +K V P ++ +
Sbjct: 99 FPEQIAY-IVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA--ACII 374
+ L+ + D N+ +L YTSGT G K + SH + +A A +
Sbjct: 158 ETLVG------AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALP 211
Query: 375 QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414
L SA +V+ +P+ H+ A + YS A L
Sbjct: 212 DAMGL-SARDAVLPVVPMFHVNAWGLP-YSAPLTGAKLVL 249
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 35.9 bits (83), Expect = 0.045
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 285 LEKILKVKAQCPKLKAIVQYEGK---PDK--PGVISWDELMELGRAAPDESLDRVLETIA 339
LEKI + P ++ V P ++++E + + D +T
Sbjct: 125 LEKI---ADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIA------EADGDFAWKTFD 175
Query: 340 TNECCTLVYTSGTEGASKPVMLSH 363
N + YTSGT G K V+ SH
Sbjct: 176 ENTAAGMCYTSGTTGDPKGVLYSH 199
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 35.6 bits (82), Expect = 0.056
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 134 SGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF---KLDGVGRTIPGTQTK 190
+G AP + E +L IP+ + FGMSE +S D K G P QT+
Sbjct: 259 TGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTR 318
Query: 191 IVDPDEEGN-------GEICLK 205
+V D++GN GE+ L+
Sbjct: 319 VV--DDQGNDCPAGVPGELLLR 338
Score = 29.0 bits (65), Expect = 5.8
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 296 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCT---------- 345
+L A++Q +P ++ D+ + GR E L + + E
Sbjct: 84 SELDALLQ----DAEPRLLLGDDAVAAGRTDV-EDLAAFIASADALEPADTPSIPPERVS 138
Query: 346 -LVYTSGTEGASKPVMLSHDNI 366
+++TSGT G K VMLS N+
Sbjct: 139 LILFTSGTSGQPKGVMLSERNL 160
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 34.9 bits (81), Expect = 0.095
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 13/171 (7%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 254
DE G + E + +A+ L LG+ V ++ N + + A G
Sbjct: 70 DERG--TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARII 127
Query: 255 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY--EGKPDKPG 312
+ T S +V DD+ + + + +L+A + +P
Sbjct: 128 LLNTGFSGPQLAEVAAREGVKA-LVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGST 186
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
+ D+L+ AP L ++ TSGT G K
Sbjct: 187 DETLDDLIAGSSTAP-------LPKPPKPGGIVIL-TSGTTGTPKGAPRPE 229
Score = 28.7 bits (65), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 154 ICEVFGMSECAGAHTVSAPDDFKLDG--VGRTIPGTQTKIVDPD 195
+ ++G +E A A T++ P+D VGR G KI+D +
Sbjct: 351 LYNLYGSTEVAFA-TIATPEDLAEAPGTVGRPPKGVTVKILDEN 393
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 34.3 bits (79), Expect = 0.14
Identities = 34/166 (20%), Positives = 52/166 (31%), Gaps = 23/166 (13%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E A LG+ V ++ N +F + A+ G +A + PE
Sbjct: 16 ELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEI 75
Query: 266 LHCLVTSDANICVVEDD--KQLEKILKVKAQCPKLKA-----IVQ-YEGKPD----KPGV 313
+ L S A + + D L L A L I Y P G
Sbjct: 76 AYILEDSGARVLIAHADLLHGLASAL--PAGVTVLSVPTPPEIAAAYRISPALLTPPAGA 133
Query: 314 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359
I W+ + + + +++YTSGT G K V
Sbjct: 134 IDWEGWLAQQEPY---------DGPPVPQPQSMIYTSGTTGHPKGV 170
Score = 33.9 bits (78), Expect = 0.20
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 112 VRWLIL-SKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIP-ICEVFGMSECAGAHTV 169
+R L L +V+ + R + AAP ++KR + P I E +G +E +GA T
Sbjct: 255 IRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE-SGAVTF 313
Query: 170 SAPDDF--KLDGVGRTIPGTQTKIVDPD--EEGNGEI 202
+ +D VG+ PG + + VD D GEI
Sbjct: 314 ATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEI 350
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 33.4 bits (77), Expect = 0.23
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRT 183
L R S A S E+K+ L L ++ + + G SE G S G+
Sbjct: 134 LSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASE-TGGGGSSVSRAGGASATGKF 192
Query: 184 IPGTQTKIVDPD----EEGNGEI 202
G T ++D D G+GE+
Sbjct: 193 ELGPDTVVLDEDGSEVPPGSGEV 215
Score = 28.8 bits (65), Expect = 6.2
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNA----------ACIIQYFKLESAALSVISFL---PL 392
++YT GT G K VM ++I + + K +A + FL PL
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67
Query: 393 SHIAAQT 399
H A Q
Sbjct: 68 MHGAGQW 74
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 33.5 bits (77), Expect = 0.26
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
L++TSGT GA K V SH + F + + F L + +S +PL H
Sbjct: 155 LIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVS-MPLFH 202
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 33.6 bits (77), Expect = 0.26
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 36/150 (24%)
Query: 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKP-DKPG--------VISWDELMELGRAA-- 326
+V D + E++ ++ +CP ++A+V D V S++ L++ GR+
Sbjct: 115 IVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVY 173
Query: 327 --PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA-A 383
P+ + ET A C Y++GT GA K V+ SH + +Q L + +
Sbjct: 174 DWPE-----LDETTAAAIC----YSTGTTGAPKGVVYSH------RSLYLQSLSLRTTDS 218
Query: 384 LSV---ISFL---PLSHIAAQTVDIYSVMT 407
L+V SFL P+ H+ + V + + M+
Sbjct: 219 LAVTHGESFLCCVPIYHVLSWGVPLAAFMS 248
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 33.0 bits (76), Expect = 0.33
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN 365
+ + ELM + + + E +E T++YTSGT G K V+ ++ N
Sbjct: 118 SVKFAELMNGPKEEAE-----IQEEFDLDEVATIMYTSGTTGKPKGVIQTYGN 165
Score = 31.5 bits (72), Expect = 1.1
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 151 DIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGTQTKIVDPDEEGN----GEICL 204
IP+ + +GM+E A +P+D KL G+ + + KI GEI +
Sbjct: 278 GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVV 337
Query: 205 K 205
K
Sbjct: 338 K 338
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 33.0 bits (76), Expect = 0.34
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 333 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
V+ T + ++ ++YTSG+ G K V+++H NI
Sbjct: 91 TVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNIC 125
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 33.0 bits (76), Expect = 0.36
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 150 LDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGTQTKIVDPDEEGNGEICLKEY 207
L + + +GM+E A PDDF + G+ +P Q I G I
Sbjct: 253 LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPANQ---TGNI----- 304
Query: 208 EANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 251
T+ L LG Y+ I + + DLG + A G
Sbjct: 305 -----TIQAQSLALG---YYP--QILDSQGIFETDDLGYLDAQG 338
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 32.9 bits (75), Expect = 0.37
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 342 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
+ +++TSGTE K V L+H N+ N +++F + + ++SFLP H
Sbjct: 184 DVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDV-MMSFLPPFH 235
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 33.2 bits (76), Expect = 0.38
Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 30/201 (14%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
++ ++ A R V A L+ + V I+ ++ + GA+YAG A ++
Sbjct: 55 DLTWSQFGARNRAVG-ARLQQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPA 113
Query: 261 SPEAC--LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 318
P LH V DD IL ++ + ++P VI+ D
Sbjct: 114 EPGHVGRLH----------AVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD- 162
Query: 319 LMELGRAAPDESLDRVLET-----IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 373
A PDE V T + L YTSG+ V ++H N+ N +
Sbjct: 163 ------AVPDE----VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQV 212
Query: 374 IQYFKLESAALSVISFLPLSH 394
I + + V S+LP H
Sbjct: 213 IDALEGQEGDRGV-SWLPFFH 232
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 33.1 bits (76), Expect = 0.39
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 37/172 (21%)
Query: 210 NVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDL-----GAIYA---GGFAAGMYTTNS 261
V +A KLG+ + V I PE + L GAI++ GGFA S
Sbjct: 82 EVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA-------S 134
Query: 262 PEACL---HC----LVTSDANI---CVVEDDKQLEKILKVKAQCPKLKAIV----QYEGK 307
E +VT+ I VV L+K L+ +Q K ++ Q
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALE-LSQHKPHKVLILNRGQVPAP 193
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359
+ W ELM +A P + + +T+ L YTSGT G K V
Sbjct: 194 LKPGRDLDWAELMA--KARPVD----CVPVESTDPLYIL-YTSGTTGKPKGV 238
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 32.5 bits (75), Expect = 0.53
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
L+ L E + ++ ++YTSG+ G K V + H +
Sbjct: 103 LPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 32.3 bits (74), Expect = 0.64
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 204 LKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPE 263
LKE A LG+ R V ++ PE + LG I G T P+
Sbjct: 6 LKEESDRA---ANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGPK 62
Query: 264 ACLHCLVTSDANICVVEDD 282
+ L + A V D
Sbjct: 63 DIRYRLERAGARAIVTSAD 81
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 32.2 bits (73), Expect = 0.65
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 346 LVYTSGTEGASKPVMLSHDNI--TFNAACIIQYFKLES----AALSVISFLPLSHIAAQT 399
++YTSG+ G K V + H + N F L++ AL+ +SF A
Sbjct: 371 IIYTSGSTGQPKGVRIEHRALANLLND--AGARFGLDADDRVLALASLSFD------ASV 422
Query: 400 VDIYSVMTVAATLWFADKNALKVYKATQAAIDRA 433
+I+ + A L A A ++
Sbjct: 423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 32.4 bits (74), Expect = 0.66
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 128 RCRVSLSGAAPISTELKR-YFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPG 186
R R ++GA + K+ + + I E +G++ECA +++ P K VGR +PG
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPG 539
Query: 187 TQTKIV 192
+++
Sbjct: 540 MDARLL 545
Score = 28.9 bits (65), Expect = 7.8
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDIY 403
+++TSG+EG K V+ SH ++ N I I F + +S LPL H TV ++
Sbjct: 370 ILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADF---TPNDRFMSALPLFHSFGLTVGLF 426
Query: 404 S-VMTVA 409
+ ++T A
Sbjct: 427 TPLLTGA 433
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 32.2 bits (73), Expect = 0.76
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
L+YTSGT K VM S+ N+ + + + L +A+ ++ PL H+ A + +V
Sbjct: 154 LMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGL-TASERLLVVGPLYHVGAFDLPGIAV 212
Query: 406 MTVAATL 412
+ V TL
Sbjct: 213 LWVGGTL 219
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 31.5 bits (72), Expect = 1.0
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 20/65 (30%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA---------------LSVIS-F 389
++YTSG+ G K V + H NAA ++Q+ +A LSV F
Sbjct: 110 VIYTSGSTGRPKGVAIEHR----NAAALLQWAAAVFSAEELAGVLAATSICFDLSVFEIF 165
Query: 390 LPLSH 394
+PLS
Sbjct: 166 VPLST 170
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 31.4 bits (72), Expect = 1.2
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 29/117 (24%)
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN-ITFNAA 371
VI+ DEL ++ D ++ ++ +++TSGT G K V +SHDN ++F
Sbjct: 118 VITLDELKDIFATGNPYDFDHAVKG---DDNYYIIFTSGTTGKPKGVQISHDNLVSF-TN 173
Query: 372 CIIQYFKLESAA-----------LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
+++ F L LSV+ D+Y + TL K
Sbjct: 174 WMLEDFALPEGPQFLNQAPYSFDLSVM-------------DLYPTLASGGTLVALPK 217
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 31.2 bits (71), Expect = 1.3
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 128 RCRVSLSGAAPIST--ELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP 185
R VS A P I I + G +E + P + GR +P
Sbjct: 211 RLCVSAGEALPAGLAERWAEATG---IEILDGIGSTEVLHIFISNRPGAARPGTTGRPVP 267
Query: 186 GTQTKIVDPD 195
G + ++VD
Sbjct: 268 GYEARLVDES 277
Score = 29.2 bits (66), Expect = 5.5
Identities = 19/77 (24%), Positives = 30/77 (38%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E A LG+ V ++ ++PE + L + AG A + +P+
Sbjct: 15 ELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTPQDL 74
Query: 266 LHCLVTSDANICVVEDD 282
H L S A + V E D
Sbjct: 75 EHILDDSGAALLVTEAD 91
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 31.2 bits (71), Expect = 1.3
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 274
A LG+ + V + +PE + + LG + G +++ PE L +A
Sbjct: 14 ANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGPEPIRDRLELGEA 73
Query: 275 NICV 278
+ +
Sbjct: 74 KVLI 77
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 31.4 bits (71), Expect = 1.3
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 338 IATNECCTLVYTSGTEGASKPVMLSHDNI 366
I ++ ++Y+SGT GASK V+L+H N+
Sbjct: 195 IKQDDVAAIMYSSGTTGASKGVVLTHRNL 223
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 31.2 bits (71), Expect = 1.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 158 FGMSECAGAHTVSA---PDDFKLDG----VGRTIPGTQTKIVDPDEE------GNGEICL 204
+GM+E T +A DDF L VG +PGT+ KI D + GEI +
Sbjct: 360 WGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVV 419
Query: 205 K 205
+
Sbjct: 420 R 420
Score = 29.6 bits (67), Expect = 4.0
Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 21/147 (14%)
Query: 266 LHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGK--PDKP----------- 311
+ L + A + + D QL ++ +V+A+ IV P +P
Sbjct: 123 SYELNDAGAEVLLALD--QLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAP 180
Query: 312 --GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 369
+L+ RA L A + L YT GT G K + ++ +
Sbjct: 181 RLAAAGAIDLLPALRACTAPVP---LPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 370 AACIIQYFKLESAALSVISFLPLSHIA 396
AA + +SFLP IA
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPEFWIA 264
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 30.8 bits (69), Expect = 1.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 128 RCRVSLSGA--APISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP 185
RC VS A ++ L +F IPI + G +E + D+++L +GR +P
Sbjct: 263 RCVVSAGEALELGLAERLMEFFGG--IPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP 320
Query: 186 GTQTKIVDPD 195
+ ++V PD
Sbjct: 321 PYEIRVVAPD 330
>gnl|CDD|221421 pfam12100, DUF3576, Domain of unknown function (DUF3576). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 100
amino acids in length. This domain has a single
completely conserved residue G that may be functionally
important.
Length = 103
Score = 28.4 bits (64), Expect = 2.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 379 LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD-KNALKVYKATQAAIDRA 433
L A+L +SF+PL + D + V T W+ + +KAT +D A
Sbjct: 9 LWRASLDTLSFMPL-----ASADPFG--GVIITDWYGTPPGPNERFKATVYILDPA 57
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 30.1 bits (68), Expect = 3.0
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 349 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTV 408
T+G+ G + +LS + N + L++A S+LPL H + +
Sbjct: 160 TAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALA 218
Query: 409 AATLWFADKNA 419
A LW A A
Sbjct: 219 GAPLWLAPTTA 229
Score = 29.3 bits (66), Expect = 5.7
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 28/105 (26%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSLDIP-------ICEVFGMSECAGAHTVSAP------ 172
L RV+L+G P+ + F + P +G++E A TV P
Sbjct: 271 LGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRV 330
Query: 173 DDFKLDG---------VGRTIPGTQTKIVDPDE------EGNGEI 202
D+ D +G IPG + +I D GEI
Sbjct: 331 DEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEI 375
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 29.9 bits (68), Expect = 3.2
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA-- 382
AA ES + ++ +++TSG+ G K VM++H + + F + A
Sbjct: 110 AAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADR 169
Query: 383 --ALSVISFLPLSHIAAQTVDIYSVMTVAATL 412
ALS + F LS DI+ ++ A L
Sbjct: 170 VLALSALHF-DLS-----VYDIFGALSAGAAL 195
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 30.0 bits (68), Expect = 3.6
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 347 VYTSGTEGASKPVMLSHDNITFNAACI 373
VYTSGT G K V+LS I AA +
Sbjct: 134 VYTSGTTGPPKGVVLSRRAI---AADL 157
>gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed.
Length = 843
Score = 30.0 bits (68), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCT 345
PGV+SW EL L AP S+ +LET +
Sbjct: 172 PGVMSWSELARLKPVAP--SMGMMLETTSRRLFEE 204
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 29.7 bits (67), Expect = 4.0
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 20/76 (26%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYF--------KLESAALSVI-SFLPLSHIA 396
++YTSGT G SK V H Q++ LE A V+ + LPL H
Sbjct: 185 ILYTSGTTGPSKGVCCPH----------AQFYWWGRNSAEDLEIGADDVLYTTLPLFHTN 234
Query: 397 AQTVDIYSVMTVAATL 412
A + + AT
Sbjct: 235 ALNA-FFQALLAGATY 249
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 29.6 bits (67), Expect = 4.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 333 RVLETIATNECCTLVYTSGTEGASKPVMLSH 363
RVL T +++ L+YTSGT G K + H
Sbjct: 80 RVLVTDGSDDPAILIYTSGTTGPPKGALHGH 110
>gnl|CDD|182590 PRK10617, PRK10617, cytochrome c-type protein NapC; Provisional.
Length = 200
Score = 29.1 bits (65), Expect = 4.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 231 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268
+IGF G I+ GGF GM N+ E C+ C
Sbjct: 31 LIGFVG--------GIIFWGGFNTGMEKANTEEFCISC 60
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 29.2 bits (66), Expect = 5.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAA 371
++YTSGT G K + +H AA
Sbjct: 103 AMIIYTSGTTGKPKGTVHTHAGFPVKAA 130
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 29.2 bits (66), Expect = 5.0
Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 29/119 (24%)
Query: 133 LSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIV 192
L G P + + I + +GMSE +G G + G + ++
Sbjct: 157 LVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGGCVYD----------GVPLDGVRVRVE 206
Query: 193 DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFY-SDLGAIYAG 250
D G I L T+AK + F P WF DLGA+ G
Sbjct: 207 D------GRIAL-----GGPTLAKGY--RNPVDPDP-----FAEPGWFRTDDLGALDDG 247
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 29.1 bits (66), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 346 LVYTSGTEGASKPVMLSHDNIT 367
++YTSG+ G K V +SH +
Sbjct: 98 VIYTSGSTGKPKGVEVSHRALV 119
>gnl|CDD|218801 pfam05896, NQRA, Na(+)-translocating NADH-quinone reductase subunit
A (NQRA). This family consists of several bacterial
Na(+)-translocating NADH-quinone reductase subunit A
(NQRA) proteins. The Na(+)-translocating NADH:
ubiquinone oxidoreductase (Na(+)-NQR) generates an
electrochemical Na(+) potential driven by aerobic
respiration.
Length = 257
Score = 28.6 bits (65), Expect = 6.7
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 436 KSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485
+ I + ++ L D+ G + P M VK VK Q + F D
Sbjct: 18 QEIEDGPAVRTVALLGEDYV---G-MKPKMLVKEGDKVKAGQPL---FED 60
>gnl|CDD|225550 COG3005, TorC, Nitrate/TMAO reductases, membrane-bound tetraheme
cytochrome c subunit [Energy production and conversion].
Length = 190
Score = 28.1 bits (63), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 245 GAIYAGGFAAGMYTTNSPEACLHC 268
G ++ GGF G+ TN+ E C+ C
Sbjct: 28 GILFWGGFNVGLELTNTEEFCVSC 51
>gnl|CDD|217619 pfam03571, Peptidase_M49, Peptidase family M49.
Length = 550
Score = 28.7 bits (65), Expect = 8.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 197 EGNGEICLKEYEANVRTVAKAFLKLGLERY 226
EGNG++ LKEYE + ++F +ER+
Sbjct: 524 EGNGKVELKEYEETPEGMIQSF----VERF 549
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,467,198
Number of extensions: 2340697
Number of successful extensions: 2213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2108
Number of HSP's successfully gapped: 226
Length of query: 486
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 385
Effective length of database: 6,457,848
Effective search space: 2486271480
Effective search space used: 2486271480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)