RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2842
(486 letters)
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 112 bits (282), Expect = 9e-27
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 4/199 (2%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
EY + KA GL + + N E+F + ++ G A +
Sbjct: 56 AEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRE 115
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+H L S I L+K++ V+ +K IV + K D G D ++
Sbjct: 116 LVHSLGISKPTIVFSSKK-GLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNT 174
Query: 325 AAPDESLD-RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE--S 381
++ + +E + ++ +SG+ G K V L+H+NI + S
Sbjct: 175 PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVS 234
Query: 382 AALSVISFLPLSHIAAQTV 400
+V++ +P H
Sbjct: 235 PGTAVLTVVPFHHGFGMFT 253
Score = 64.5 bits (158), Expect = 3e-11
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 187
SG AP+S E+ + + +G++E A ++ D K G+ +P
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371
Query: 188 QTKIVDPDEEGN-------GEICLK 205
+ K++D + GE+C+K
Sbjct: 372 KAKVIDL-DTKKSLGPNRRGEVCVK 395
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 108 bits (273), Expect = 1e-25
Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 4/205 (1%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
EY +A+A + GL H + + N+ ++F LGA++ G A +
Sbjct: 54 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 113
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L+ + S + V L+KIL V+ + P ++ I+ + K D G S +
Sbjct: 114 LLNSMNISQPTVVFVSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHL 172
Query: 325 AAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ--YFKLES 381
D V E+ ++ ++ +SG+ G K V L H + +
Sbjct: 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII 232
Query: 382 AALSVISFLPLSHIAAQTVDIYSVM 406
+++S +P H + ++
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLI 257
Score = 65.7 bits (161), Expect = 1e-11
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 187
SG AP+S E+ I + +G++E A ++ D K VG+ +P
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369
Query: 188 QTKIVDPDEEGN-------GEICLK 205
+ K+VD + G GE+C++
Sbjct: 370 EAKVVDL-DTGKTLGVNQRGELCVR 393
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 103 bits (258), Expect = 1e-23
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ E R VA K+G+++ + + ++PE+ + LGA + G ++P
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
S A + + + EK+ + +K + + PD G + + EL +
Sbjct: 113 LAKHAKASRAKLLITQAC-YYEKVKDFARESD-VKVMC-VDSAPD--GCLHFSELTQADE 167
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+ I+ ++ L Y+SGT G K VML+H + + A +
Sbjct: 168 NEAPQ------VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFH 221
Query: 385 S---VISFLPLSHIAAQTVDIYSVMTVAATL 412
S ++ LP+ HI A + + V A +
Sbjct: 222 SEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252
Score = 60.6 bits (148), Expect = 5e-10
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVS-----APDDFKLDGVGR 182
R+ SG AP+ EL+ + + + +GM+E + P D K G
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT 359
Query: 183 TIPGTQTKIVDPDEEGN-------GEICLK 205
+ + KIVDP E G GEIC++
Sbjct: 360 VVRNAEMKIVDP-ETGASLPRNQPGEICIR 388
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 102 bits (255), Expect = 5e-23
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 14/215 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ R +A F KLG+ + V ++ N PE+ S L A + G A +P
Sbjct: 92 SDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAE 151
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELG 323
S+ + + E ++KI ++ + I E P G + + EL +
Sbjct: 152 IAKQAKASNTKLIITEAR-YVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQST 210
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
A + I+ ++ L Y+SGT G K VML+H + + Q E+
Sbjct: 211 TEASEVIDS---VEISPDDVVALPYSSGTTGLPKGVMLTHKGLV---TSVAQQVDGENPN 264
Query: 384 LS------VISFLPLSHIAAQTVDIYSVMTVAATL 412
L ++ LP+ HI A + + V A +
Sbjct: 265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299
Score = 57.3 bits (139), Expect = 7e-09
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVS-----APDDFKLDGVGR 182
RV SGAAP+ EL+ + + + + +GM+E +S P K G
Sbjct: 347 RVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT 406
Query: 183 TIPGTQTKIVDPDEEGN-------GEICLK 205
+ + KIVDP + G+ GEIC++
Sbjct: 407 VVRNAEMKIVDP-DTGDSLSRNQPGEICIR 435
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 93.4 bits (233), Expect = 2e-20
Identities = 41/235 (17%), Positives = 80/235 (34%), Gaps = 23/235 (9%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E E R A A LG+ + ++ + + LGA+YAG T +P
Sbjct: 52 GELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPAD 111
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKA--IVQYEGKPDKPGVISWDELMEL 322
++ L S A + ++ + + IV + + ++EL++
Sbjct: 112 YVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELID- 169
Query: 323 GRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY-FKL 379
AA + AT ++ +Y+SG+ G K + +H N+ + A + +
Sbjct: 170 --AAAPA-----AKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222
Query: 380 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATL-----WFADKNALKV---YKAT 426
+ V S L + ++V AT ++ T
Sbjct: 223 AENDV-VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276
Score = 53.3 bits (129), Expect = 1e-07
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ S + E+ F + I + G +E + + GR +PG +
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362
Query: 189 TKIVDPDEEGN-------GEICLK 205
++ DE G+ G++ +K
Sbjct: 363 IELR--DEAGHAVPDGEVGDLYIK 384
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 92.3 bits (230), Expect = 4e-20
Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 13/196 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E + +A + G+ + V + N+ ++ + +
Sbjct: 56 LEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFE 115
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
H L S+A VV E V + + V V S E+M+ G
Sbjct: 116 LEHILNDSEATTLVVHSM-LYENFKPVLEKTGVERVFV------VGGEVNSLSEVMDSGS 168
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+ E +A + YT GT G K VML+H N+ NA + L
Sbjct: 169 EDFENVKVNPEEDVAL-----IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMD- 222
Query: 385 SVISFLPLSHIAAQTV 400
+++ +P+ H A +
Sbjct: 223 TIVGCMPMFHSAEFGL 238
Score = 63.0 bits (154), Expect = 1e-10
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 130 RVSLSGAAPISTELKRYFLSL--------DIPICEVFGMSECAGAHTVSAPDDFKLDG-V 180
+V +GA P++ L L L + +++GM+E T + P
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358
Query: 181 GRTIPGTQTKIVDPDEEGN-------GEICLK 205
G + + K++ E+G GEI ++
Sbjct: 359 GVPMSDIELKVISL-EDGRELGVGESGEIVIR 389
Score = 29.9 bits (68), Expect = 2.4
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 37 PPISVPGLLGRTAAQYPDQVAL---CQKQENGEWKKVTYK------------LQTTGVKR 81
P IS+ + A ++ ++ A+ K + + + + + GV++
Sbjct: 17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRK 76
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 91.9 bits (229), Expect = 5e-20
Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 20/211 (9%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA---GMYTTNS 261
E A VA + GL+ V + E L + AGG YT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL-- 89
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELME 321
E + + ++ I V D + + I + A+ + G S +
Sbjct: 90 HELD-YFITDAEPKIVVC-DPSKRDGIAAIAAKVGATVETL------GPDGRGSLTDAAA 141
Query: 322 LGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
A ++ ++YTSGT G SK MLSHDN+ N+ ++ Y++
Sbjct: 142 GASEAFAT------IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTP 195
Query: 382 AALSVISFLPLSHIAAQTVDIYSVMTVAATL 412
+I LP+ H V + ++
Sbjct: 196 DD-VLIHALPIYHTHGLFVASNVTLFARGSM 225
Score = 66.5 bits (163), Expect = 6e-12
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 40/142 (28%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ +SG+AP+ + R + + + E +GM+E + D VG +PG
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330
Query: 189 TKIVDPDEEGN-------GEICL------KEY----EANVRTVAKAFLKLGLERYHSVCI 231
++ DP E G G I + K Y E F G
Sbjct: 331 ARVTDP-ETGKELPRGDIGMIEVKGPNVFKGYWRMPEKT----KSEFRDDG--------- 376
Query: 232 IGFNAPEWFYS-DLGAIYAGGF 252
+F + DLG I G+
Sbjct: 377 -------FFITGDLGKIDERGY 391
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 91.8 bits (229), Expect = 5e-20
Identities = 27/208 (12%), Positives = 66/208 (31%), Gaps = 13/208 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
++Y A +A L+ G+ V I+ N E G + + +
Sbjct: 35 RDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADE 94
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L ++ V D + + V +K + +L
Sbjct: 95 IAFVLGDGAPSVVVAGTD-YRDIVAGVLPSLGGVKKAYAIGDGSG-----PFAPFKDLAS 148
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
P + + +++T+ G + ++S N+ + ++ ++L A +
Sbjct: 149 DTPFSAPEFGAADGFV-----IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADV 203
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATL 412
++ LPL H+ + + ++
Sbjct: 204 NLGM-LPLFHVTGLGL-MLTLQQAGGAS 229
Score = 66.8 bits (164), Expect = 5e-12
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQT 189
R P + E + FG SE +G T + D + GR +
Sbjct: 275 RAVTGLDTPETIERFEATC-PNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTV 332
Query: 190 KIVDPDEEGN-------GEICLK 205
+VD + GEI L+
Sbjct: 333 AVVDAE--DRPLPPGEVGEIVLR 353
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 90.7 bits (226), Expect = 1e-19
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 14/202 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ A A LG+ + V ++ N+ E+ GA G A + T +
Sbjct: 47 AQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPE 106
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L S + + + I ++AQ + + G D L E R
Sbjct: 107 VSFILSDSGSKVVIYGAP-SAPVIDAIRAQADPPGTVTDWIG---------ADSLAERLR 156
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+A D ++ ++YTSGT G K V+ +H+++ A+ +
Sbjct: 157 SAAA---DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDR 213
Query: 385 SVISFLPLSHIAAQTVDIYSVM 406
++ LP+ H+AA T I+S M
Sbjct: 214 LLLP-LPMFHVAALTTVIFSAM 234
Score = 77.2 bits (191), Expect = 2e-15
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGT 187
R ++G AP+ L + + + +I + + + ++E G T+ +D K GR T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346
Query: 188 QTKIVDPDEE----GNGEICLK 205
+ D G GE+ +K
Sbjct: 347 DVAVRGDDGVIREHGEGEVVIK 368
Score = 29.8 bits (68), Expect = 2.0
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 15/54 (27%)
Query: 40 SVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK------------LQTTGVKR 81
++ +L + A P A + + TY L G+ +
Sbjct: 17 NIGWMLRQRATVSPRLQAYVEPSTDVRM---TYAQMNALANRCADVLTALGIAK 67
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 85.7 bits (213), Expect = 5e-18
Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 23/211 (10%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA---GMYTTNSP 262
E A V VA GL V ++ N+ + + L G A S
Sbjct: 34 ELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK--SA 91
Query: 263 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 322
E + + V+ +Q+ + Q I+ S+ +E
Sbjct: 92 EL-AELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDLVRDGEPYSYGPPIED 147
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 382
+ P + + YTSGT G K ++ + L
Sbjct: 148 PQREPAQ-------------PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 383 ALSVI-SFLPLSHIAAQTVDIYSVMTVAATL 412
+V+ +PL H+ + + + + T
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225
Score = 64.1 bits (157), Expect = 3e-11
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 43/147 (29%)
Query: 126 LDRCRVSLSGAAPISTE-LKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTI 184
LD R A + L+ L ++G +E + + P K
Sbjct: 271 LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQP---KTGTEMAPG 327
Query: 185 PGTQTKIVDPDEEGN--------GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIG-FN 235
++ +IV + GE+ + S +G N
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEGELIVA-------------------ASDSAF-VGYLN 367
Query: 236 APE---------WFYS-DLGAIYAGGF 252
P+ W+ + D+ G
Sbjct: 368 QPQATAEKLQDGWYRTSDVAVWTPEGT 394
Score = 29.1 bits (66), Expect = 3.8
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 40 SVPGLLGRTAAQYPDQVALCQKQENGEWKKVTY 72
+V +L R A + PD AL T+
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRL---TH 32
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 83.0 bits (206), Expect = 3e-17
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGT 187
+ L G A +S + L ++PI FGM+E + P+ + D VG
Sbjct: 277 QKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANV 336
Query: 188 QTKIVDPDEEGNGEICLK 205
KI +P++EG+GE+ +K
Sbjct: 337 DVKIKNPNKEGHGELMIK 354
Score = 81.5 bits (202), Expect = 1e-16
Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 7/209 (3%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ +AK L + V + N+ + A A + T +P
Sbjct: 30 QNLYCEASLLAKR---LKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNE 86
Query: 265 CLHCLVTSDANICVVEDD-KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELG 323
+ + + D + + + + G D I +D E
Sbjct: 87 MTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETV 146
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
+ + + + ++ ++++TSGT G K V + N +A + +
Sbjct: 147 VPK-ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDT 205
Query: 384 LSVISFLPLSHIAAQTVDIYSVMTVAATL 412
+ +S LP+ HI+ +V + +V+ T+
Sbjct: 206 -NWLSVLPIYHISGLSVLLRAVI-EGFTV 232
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 81.4 bits (202), Expect = 1e-16
Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 26/221 (11%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---- 260
+E + +A F KLG+++ V + N E+F G A
Sbjct: 54 RELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLG---ALPVFALPSHR 110
Query: 261 SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISW 316
S E + ++A ++ D +V+++ P LK I+ G+ +
Sbjct: 111 SSEI-TYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII-VAGEA--EEFLPL 166
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
++L P+ V L + G+ G SK + +HD+ ++ ++
Sbjct: 167 EDLHTEPVKLPEVKSSDV---------AFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV 217
Query: 377 FKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 416
L+ + + + + LP++H + + V+ + +
Sbjct: 218 CWLDHSTVYLAA-LPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
Score = 56.0 bits (136), Expect = 1e-08
Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 43/144 (29%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHT-VSAPDDFKLDGVGRTI-PG 186
+V G A S E R + + +VFGM+E +T + P++ ++ G+ + P
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360
Query: 187 TQTKIVDPDEEGN-------GEIC------LKEY----EANVRTVAKAFLKLGLERYHSV 229
++++ D G + ++ Y E N A +F + G
Sbjct: 361 DESRVWDDH--DRDVKPGETGHLLTRGPYTIRGYYKAEEHN----AASFTEDG------- 407
Query: 230 CIIGFNAPEWFYS-DLGAIYAGGF 252
++ + D+ + G+
Sbjct: 408 ---------FYRTGDIVRLTRDGY 422
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 80.4 bits (199), Expect = 3e-16
Identities = 25/251 (9%), Positives = 71/251 (28%), Gaps = 30/251 (11%)
Query: 181 GRTIPGTQTKIVDPDEE----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNA 236
+ T+ D G ++ +E +A + + G++ + + N
Sbjct: 26 DLPLTDILTRHAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85
Query: 237 PEWFYSDLGAIYAGG---FAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ----LEKIL 289
E + + + G A + E + + + + + +
Sbjct: 86 AELYITFFALLKLGVAPVLALFSHQ--RSEL-NAYASQIEPALLIADRQHALFSGDDFLN 142
Query: 290 KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYT 349
+ ++ + G + + + +E +
Sbjct: 143 TFVTEHSSIRVVQLLND----SGEHNLQDAINHPAEDFTA------TPSPADEVAYFQLS 192
Query: 350 SGTEGASKPVMLSHDNITFNAACIIQYFKL--ESAALSVISFLPLSHIAAQTVD-IYSVM 406
GT G K + +H++ ++ ++ + ++ L +P +H A + V
Sbjct: 193 GGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCA---IPAAHNYAMSSPGSLGVF 249
Query: 407 TVAATLWFADK 417
T+ A
Sbjct: 250 LAGGTVVLAAD 260
Score = 56.5 bits (137), Expect = 1e-08
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 43/144 (29%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHT-VSAPDDFKLDGVGRTI-PG 186
++ G A +S L + + + +VFGM+E +T + + + G + P
Sbjct: 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD 364
Query: 187 TQTKIVDPDEEGN-------GEIC------LKEY----EANVRTVAKAFLKLGLERYHSV 229
+ + D + GN G + + Y + N A AF G
Sbjct: 365 DEVWVADAE--GNPLPQGEVGRLMTRGPYTFRGYYKSPQHN----ASAFDANG------- 411
Query: 230 CIIGFNAPEWFYS-DLGAIYAGGF 252
++ S DL +I G+
Sbjct: 412 ---------FYCSGDLISIDPEGY 426
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 77.6 bits (192), Expect = 2e-15
Identities = 26/221 (11%), Positives = 63/221 (28%), Gaps = 22/221 (9%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---- 260
E + +A + GL + + + N E++ + AG +
Sbjct: 59 IELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG---VVVLNALYSHR 115
Query: 261 SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISW 316
E + + + + + I + + I+ + G++ W
Sbjct: 116 QYEL-NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDW 174
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
E + +E + G+ G K + +H++ ++ +
Sbjct: 175 IET--------PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI 226
Query: 377 FKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 416
L S + + LP H + V+ + A
Sbjct: 227 CGLNSNTRLLCA-LPAPHNFMLSSPGALGVLHAGGCVVMAP 266
Score = 54.1 bits (131), Expect = 6e-08
Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 43/144 (29%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHT-VSAPDDFKLDGVGRTIPG- 186
++ G A L R L+ + +VFGM+E +T + D+ GR I
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369
Query: 187 TQTKIVDPDEEGN-------GEIC------LKEY----EANVRTVAKAFLKLGLERYHSV 229
+ KIVD G + Y E N ++ F +
Sbjct: 370 DEIKIVDEQ--YREVPEGEIGMLATRGPYTFCGYYQSPEHN----SQVFDEDN------- 416
Query: 230 CIIGFNAPEWFYS-DLGAIYAGGF 252
++YS DL G
Sbjct: 417 ---------YYYSGDLVQRTPDGN 431
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 73.8 bits (182), Expect = 3e-14
Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 34/212 (16%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E A A + V + A E + + A+ AG A + + +
Sbjct: 53 ELAAAAGATAG-----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKEL 107
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 325
H L S ++ + D +L P G + ++ R
Sbjct: 108 AHILSDSAPSLVLAPPDAEL----------------------PPALGALERVDVDVRARG 145
Query: 326 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS 385
A E + + +VYTSGT G K ++ + + ++ +
Sbjct: 146 AVPE------DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW-TGEDV 198
Query: 386 VISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
++ LPL H+ + I + ++ +
Sbjct: 199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230
Score = 70.7 bits (174), Expect = 3e-13
Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 40/143 (27%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ +SG+A + + + E +GM+E +V A + + VG +PG +
Sbjct: 275 RLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334
Query: 189 TKIVDPD--------EEGNGEICL------KEY----EANVRTVAKAFLKLGLERYHSVC 230
++V+ D E GEI + EY +A A AF + G
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT----AAAFTEDG-------- 382
Query: 231 IIGFNAPEWFYS-DLGAIYAGGF 252
+F + D+ G+
Sbjct: 383 --------FFRTGDMAVRDPDGY 397
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 68.0 bits (167), Expect = 2e-12
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 220 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279
GL+R V ++ PEW+ LG I AG L+ L S A +V
Sbjct: 93 ACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAK-AIV 151
Query: 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 339
D+ ++++ V ++CP L+ + K G +++ +L+ A +
Sbjct: 152 AGDEVIQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKKLLN---EASTT-----HHCVE 202
Query: 340 T--NECCTLVYTSGTEGASKPVMLSH 363
T E + +TSGT G K S+
Sbjct: 203 TGSQEASAIYFTSGTSGLPKMAEHSY 228
Score = 36.8 bits (86), Expect = 0.013
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTI 184
+ ++ + E + + + I E +G +E VS K +G
Sbjct: 321 FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAA 380
Query: 185 PGTQTKIVDPDEEGN-------GEICLK 205
+I+ D++GN G+I ++
Sbjct: 381 SCYDVQII--DDKGNVLPPGTEGDIGIR 406
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 66.0 bits (162), Expect = 1e-11
Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 3/151 (1%)
Query: 214 VAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 273
A F+K G+ + V + + +++Y LG G A ++ + +
Sbjct: 99 AANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAG 158
Query: 274 ANICVVEDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 332
+ V + + E++ + A+C + G G I + + +E ++P
Sbjct: 159 LKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELE--ESSPIFERP 216
Query: 333 RVLETIATNECCTLVYTSGTEGASKPVMLSH 363
+ + C + ++SGT G K V +
Sbjct: 217 TGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
Score = 29.8 bits (68), Expect = 2.0
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 130 RVSLSGAAPISTE-LKRYFLSLDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT 187
+ ++ P++ E R+ I + E FG +E + P + K +G+ PG
Sbjct: 344 KYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTET-VVTIATFPWMEPKPGSIGKPTPGY 402
Query: 188 QTKIVDPDEEGN-------GEICLK 205
+ +++ D +G GEI +
Sbjct: 403 KIELM--DRDGRLCEVGEEGEIVIN 425
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 60.8 bits (148), Expect = 5e-10
Identities = 40/211 (18%), Positives = 65/211 (30%), Gaps = 33/211 (15%)
Query: 195 DEEGNGEICL--KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 252
D E L + +A AK L L L++ V +I + E+ + YAG
Sbjct: 41 DRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLV 100
Query: 253 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQC---------PKLKAIVQ 303
A + + D K+ + A C L +
Sbjct: 101 AVPLAIPMGVG----------------QRDSWSAKLQGLLASCQPAAIITGDEWLPLVNA 144
Query: 304 YEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
+ V+S L A L+ N+ L YTSG+ + V+++H
Sbjct: 145 ATHDNPELHVLSHAWFKALPEADVA------LQRPVPNDIAYLQYTSGSTRFPRGVIITH 198
Query: 364 DNITFNAACIIQYFKLESAALSVISFLPLSH 394
+ N I +S+LP H
Sbjct: 199 REVMANLRAISHDGIKLRPGDRCVSWLPFYH 229
Score = 33.8 bits (78), Expect = 0.15
Identities = 26/135 (19%), Positives = 39/135 (28%), Gaps = 44/135 (32%)
Query: 115 LILSKVK--QAMGLD--RCRVSLSGAAPISTELKRYFLSLDIP-------ICEVFGMSEC 163
L +V LD RV+ GA PIS E F +G++E
Sbjct: 283 LCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAEN 342
Query: 164 AGAHTVSAPDD----FKLD------------------------GVGRTIPGTQTKIVDPD 195
A A + S ++D G+ +P +I +
Sbjct: 343 ALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEA 402
Query: 196 ----EEGN-GEICLK 205
E G IC+
Sbjct: 403 GMPVAERVVGHICIS 417
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 56.6 bits (137), Expect = 8e-09
Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 28/196 (14%)
Query: 209 ANVRTVAKAFLKLGL--ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
VA+ + G +R V I E+ + LGA+ AG A +
Sbjct: 66 RRTLNVAQELSRCGSTGDR---VVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDE 122
Query: 267 H-CLVTSDAN-ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
V SD++ + ++ ++ +++ A+ P P +I D L
Sbjct: 123 RSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESP----------PSIIEVDLL----- 167
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
D + L YTSG+ V++SH N+ N ++ + ++ +
Sbjct: 168 -DLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGI 226
Query: 385 S-----VISFLPLSHI 395
++S+LP H
Sbjct: 227 PPPNSALVSWLPFYHD 242
Score = 32.4 bits (74), Expect = 0.39
Identities = 22/132 (16%), Positives = 33/132 (25%), Gaps = 41/132 (31%)
Query: 115 LILSKVK--QAMGLD--RCRVSLSGAAPISTELKRYFLSLDIP-------ICEVFGMSEC 163
L + G D LSG+ + + F I + ++E
Sbjct: 295 LAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEA 354
Query: 164 AGAHTVSAPD--------DFKLDGVGRTIP----------------GTQTKIVDPD---- 195
S P D + G P +IVD D
Sbjct: 355 TVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIE 414
Query: 196 -EEGN-GEICLK 205
+G GEI +
Sbjct: 415 CPDGTVGEIWVH 426
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 53.1 bits (128), Expect = 1e-07
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 18/188 (9%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC--L 266
+ + +A G + V ++ + LG +YAG A +Y +
Sbjct: 48 QHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKA 107
Query: 267 HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA 326
+VT+ + V+ ++K + K K I+ + + ++
Sbjct: 108 QRIVTNSKPVIVLMIADHIKKFTADELNT---------NPKFLKIPAIALESIELNRSSS 158
Query: 327 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSV 386
+I +N+ L YTSG+ K VM+SH N+ N I F + +
Sbjct: 159 WQ------PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIF 212
Query: 387 ISFLPLSH 394
S+LP H
Sbjct: 213 -SWLPPHH 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 61/437 (13%), Positives = 117/437 (26%), Gaps = 148/437 (33%)
Query: 58 LCQKQENGEWKKVTYKLQTTGVKRWIA------NYAKSTSLQHYMAYLEK--NVSEPYT- 108
L KQE K V L+ +++ S + Y+ ++ N ++ +
Sbjct: 71 LLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 109 YRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHT 168
Y + R K++QA+ EL+ + G+
Sbjct: 129 YNVSRLQPYLKLRQAL----------------LELR------PAKNVLIDGVL------- 159
Query: 169 VSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHS 228
G G+T + L ++
Sbjct: 160 ----------GSGKT-------------------WV---------ALDVCLSYKVQ---- 177
Query: 229 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVT----SDANICVVEDDKQ 284
C + F F+ +L NSPE L L D N D
Sbjct: 178 -CKMDFKI---FWLNLK------------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 285 LEKILKVKAQCPKLKAIVQYEGKPDKPGVIS--WDELMELGRAAPDESLDRVLETIATNE 342
K+ Q +L+ +++ + + V+ + +
Sbjct: 222 NIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNA--------------KAWNAF-NLS 265
Query: 343 CCTLVYT-------SGTEGASKPVMLSHDNITFN--------AACI-IQYFKLESAALSV 386
C L+ T + + + L H ++T + + L L+
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT- 324
Query: 387 ISFLPLSHIAAQTVDIYSVMTVAATLW--FADKNALKVYKATQAAIDRANLKSISNAQKI 444
+ LS IA D W + N K+ +++++ L+ +
Sbjct: 325 TNPRRLSIIAESIRD-------GLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMF 375
Query: 445 QKFEFLPADFSIPTGEL 461
+ P IPT L
Sbjct: 376 DRLSVFPPSAHIPTILL 392
Score = 35.2 bits (80), Expect = 0.055
Identities = 52/449 (11%), Positives = 120/449 (26%), Gaps = 139/449 (30%)
Query: 93 QHYMAYLEKNVSE-PYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLD 151
H+ +++ E Y Y+ + + D C+ + K
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVD--NFD-CK-------DVQDMPK------- 43
Query: 152 IPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKEYEANV 211
+ E H + + D + G R L + +
Sbjct: 44 ----SILSKEEID--HIIMSKDA--VSGTLRLF-----------------WTLLSKQEEM 78
Query: 212 RTVAKAFLKLGLER-YHSVCIIGFNAPEWFYSDLGAIYAG-GFAAGMYTT------NSPE 263
+ F++ L Y ++ S + MY N +
Sbjct: 79 ---VQKFVEEVLRINY-----------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 264 ACLHCLVTSDANICVVEDDKQLEKILKVKAQ------------CPK----LKAIVQYEGK 307
V + N+ ++ +L + L + + K L + Y+ +
Sbjct: 125 ------VFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
I W + L E++ +L+ + + + T + NI
Sbjct: 178 CKMDFKIFW---LNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHS-----SNIK 224
Query: 368 FNAACIIQYFK-LESAALSVISFLPLSHIA-AQTVDIYSVM--TVAATLWFADK---NAL 420
I + L + L L ++ A+ + +++ + T K + L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQVTDFL 281
Query: 421 KVYKATQAAIDRANLKSISNAQKIQKF-EFLPADFSIPTGELGPTMKVKRPFVV------ 473
T ++D + +++ + ++L +L + P +
Sbjct: 282 SAATTTHISLDH-HSMTLTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAES 336
Query: 474 ----------------KKYQSIIDKFYDV 486
K +II+ +V
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Score = 28.7 bits (63), Expect = 6.3
Identities = 32/281 (11%), Positives = 75/281 (26%), Gaps = 93/281 (33%)
Query: 2 KEERPNQILD--SDLLYTTEPHGRTRIHLGEAGVAAQPPISVPGLLGR-----TAAQYP- 53
P +L+ LLY +P+ +R + + + + Y
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-----IKLRIHSIQAELRRLLKSKPYEN 245
Query: 54 -----DQVALCQKQENGEWKKVTYK---LQTTGVKRWIANYAKSTSLQHY-MAYLEKNVS 104
V Q W L TT K+ + ++ + + H + + ++
Sbjct: 246 CLLVLLNV-----QNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLT 299
Query: 105 EPYTYRLV-RWLILSKVK---QAMGLDRCRVSLSGAA---PIST---------------- 141
L+ ++L + + + R+S+ + ++T
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 142 ----------ELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQT-K 190
E ++ F L + F P IP T
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSV-----F-------------PPSAH-------IP-TILLS 393
Query: 191 IV--DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSV 229
++ D + + + + ++ + K S+
Sbjct: 394 LIWFDVIKSDVMVV-VNKLHK--YSLVEKQPKESTISIPSI 431
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 51.0 bits (123), Expect = 5e-07
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAP---EWFY--SDLGAIYAGGFAAGMYTT 259
E R + LG+ V +GFN E ++ +GA+ ++T
Sbjct: 51 AEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAV--------LHTA 102
Query: 260 N---SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISW 316
N SP+ + L ++ + + D L + ++ + ++ V + G +++
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVM-DEKAPEGYLAY 160
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
+E LG A + E C + YT+GT G K V+ SH
Sbjct: 161 EEA--LGEEADPVRVP---E----RAACGMAYTTGTTGLPKGVVYSH 198
Score = 47.9 bits (115), Expect = 6e-06
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 45/167 (26%)
Query: 114 WLILSKVKQAMG--LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSA 171
WL L+ ++ G L R + G + L F + + + + +G++E + +
Sbjct: 278 WLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNF 337
Query: 172 PDDFKLDGV------------GRTIPGTQTKIVDP-------DEEGNGEICL------KE 206
L+ + G IP + ++ D D + GE+ L
Sbjct: 338 VKS-HLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 396
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
Y N A G +F + D+ G+
Sbjct: 397 YYGNEEATRSALTPDG----------------FFRTGDIAVWDEEGY 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 5e-06
Identities = 82/489 (16%), Positives = 149/489 (30%), Gaps = 169/489 (34%)
Query: 30 EAGVAAQPPISVPGLLGRTAAQYPDQVA-LCQKQENGEWKKVTYKLQTTGVKRWIANYAK 88
E A P + L+G+ + V+ L + + G++ +V L +
Sbjct: 46 EGFAADDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQV---LNL------CLTEFE 92
Query: 89 STSLQ----H-YMAYLEKNV--SEPYTYRLVRWLILSKVKQAMGLDRCRVS-LSGAAPIS 140
+ L+ H A L + + T L++ I +++ D+ S L A
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 141 TELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNG 200
+ + +FG G Q GN
Sbjct: 153 ----------NAQLVAIFG--------------------------G-Q---------GNT 166
Query: 201 EICLKE-------YEANVR----TVAKAFLKL-----GLERYHSVCIIGFNAPEWFYSDL 244
+ +E Y V A+ +L E+ + G N EW +
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ---GLNILEWLEN-- 221
Query: 245 GAIYAGGFAAGMYTTNSPEAC-LHCLVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIV 302
Y + P +C L + A+ V K+ P +L++ +
Sbjct: 222 ----PSNTPDKDYLLSIPISCPLIGV-IQLAHYVVT---------AKLLGFTPGELRSYL 267
Query: 303 Q---YEGKPDKPGVI---------SWDELME-----------LG----RAAPDESLD-RV 334
+ + G++ SW+ +G A P+ SL +
Sbjct: 268 KGATGHSQ----GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 335 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPL-S 393
LE N EG P MLS N+T +++ S LP
Sbjct: 324 LEDSLENN----------EGVPSP-MLSISNLTQE--------QVQDYVNKTNSHLPAGK 364
Query: 394 HIAAQTVDIYSVMTVA---ATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQKF--E 448
+ V+ + V+ +L+ + K KA + +D++ I +++ KF
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-KA-PSGLDQSR---IPFSERKLKFSNR 419
Query: 449 FLPADFSIP 457
FLP + P
Sbjct: 420 FLPV--ASP 426
Score = 48.5 bits (115), Expect = 5e-06
Identities = 39/184 (21%), Positives = 55/184 (29%), Gaps = 57/184 (30%)
Query: 32 GVAAQ---PPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKR-----WI 83
GV P S+P P + EN E + L + + + ++
Sbjct: 307 GVRCYEAYPNTSLP----------PSILEDSL--ENNE-GVPSPMLSISNLTQEQVQDYV 353
Query: 84 A--NYAKSTSLQHYMAYLEKN------VSEPYT--YRLVRWLILSKVKQAMGLDRCRVSL 133
N Q ++ L N VS P Y L L K K GLD+ R+
Sbjct: 354 NKTNSHLPAGKQVEIS-L-VNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPF 409
Query: 134 SGAAP-ISTELKRYFLSLDIPICEVFGMSECAGAHT---VSAPDDFKLDGVGRTI--PGT 187
S S FL P+ F H+ V A D D V +
Sbjct: 410 SERKLKFSNR----FL----PVASPF--------HSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 188 QTKI 191
+I
Sbjct: 454 DIQI 457
Score = 44.3 bits (104), Expect = 1e-04
Identities = 62/357 (17%), Positives = 112/357 (31%), Gaps = 122/357 (34%)
Query: 121 KQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEV-----------FG------MSE 162
+Q MG+D + S A + +F I ++ FG + E
Sbjct: 1628 EQGMGMDLYKTS-KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 163 CAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEEGNGEICLKEYE--ANVRTVAKAF 218
A D K + + + I T E+G + ++ A + + KA
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--LLSATQFTQPA-LTLMEKAA 1743
Query: 219 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG---G-FAAGMYTTNSPEACLHCLVTSDA 274
+ L+ A +AG G +AA L L A
Sbjct: 1744 FED-LK-------------SKGLIPADATFAGHSLGEYAA-----------LASL----A 1774
Query: 275 NICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP---DESL 331
++ +E L +++ + + A+ + E G+I+ + GR A E+L
Sbjct: 1775 DVMSIES---LVEVVFYRGMTMQ-VAVPRDELGRSNYGMIAINP----GRVAASFSQEAL 1826
Query: 332 DRVLETIA--TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISF 389
V+E + T +V N +N QY V +
Sbjct: 1827 QYVVERVGKRTGWLVEIV-----------------N--YNVE-NQQY---------VAA- 1856
Query: 390 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQK 446
+ A +D TV L N +K+ K ID L+ + ++++
Sbjct: 1857 ---GDLRA--LD-----TVTNVL-----NFIKLQK-----IDIIELQKSLSLEEVEG 1893
Score = 31.9 bits (72), Expect = 0.58
Identities = 48/281 (17%), Positives = 88/281 (31%), Gaps = 102/281 (36%)
Query: 3 EERPNQILDSDLLYTTEPHGRTRIHLGE--AGVAAQP--------PISVPGLLGRTA-AQ 51
E LD++ ++ G +++ E + P PIS P L+G A
Sbjct: 196 SELIRTTLDAEKVF---TQG---LNILEWLENPSNTPDKDYLLSIPISCP-LIGVIQLAH 248
Query: 52 YPDQVALCQKQ--ENGEWKKVTYKLQ-TTGVKRWI---ANYAKSTSLQHYMAYLEKNVSE 105
Y V + GE + L+ TG + + A++ S + + +V
Sbjct: 249 Y---VVTAKLLGFTPGELRSY---LKGATGHSQGLVTAVAIAETDSWESF----FVSVR- 297
Query: 106 PYTYRLVRWLILSKVKQAMGLDRC-----RVSLSGAAPISTELKR------YFLSL-DIP 153
+ + L +G+ RC SL + + L+ LS+ ++
Sbjct: 298 ----KAITVLFF------IGV-RCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLT 345
Query: 154 ICEVFGMSECAGAHT----------VSAPDDF-------KLDGVGRTI------PGT-QT 189
+V +H V+ + L G+ T+ G Q+
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 190 KIVDPDEEGNGEICLKEYEANVR--TVAKAFLKLGLERYHS 228
+I P E R + FL + +HS
Sbjct: 406 RI--PFSE--------------RKLKFSNRFLPVA-SPFHS 429
Score = 31.6 bits (71), Expect = 0.70
Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 64/149 (42%)
Query: 27 H-LGE-------AGV---------------AAQPPISVP-GLLGRT----AAQYPDQVAL 58
H LGE A V Q ++VP LGR+ A P +VA
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQ--VAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 59 CQKQENGEW--KKVTYKLQTTGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTY------- 109
QE ++ ++V + TG I NY NV E Y
Sbjct: 1820 SFSQEALQYVVERVG---KRTGWLVEIVNY---------------NV-ENQQYVAAGDLR 1860
Query: 110 ---RLVRWLILSKVK-QAMGLDRCRVSLS 134
+ +L+ +K Q + + + SLS
Sbjct: 1861 ALDTVTN--VLNFIKLQKIDIIELQKSLS 1887
Score = 31.6 bits (71), Expect = 0.74
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 54/149 (36%)
Query: 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFL-PLS-HIAAQTV-DIYSVMTVAAT 411
+++P+ LSH ++ L P + A + + ++ + T
Sbjct: 5 STRPLTLSHGSLEH-------------------VLLVPTASFFIASQLQEQFNKILPEPT 45
Query: 412 LWFADKN----------------ALKVYKATQAAIDRANLKSISNAQKIQKFE--FLPAD 453
FA + + V + D+ L + +FE +L +
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-LNLC-----LTEFENCYLEGN 99
Query: 454 ------FSIPTGELGPTMKVKRPFVVKKY 476
+ T VK ++K Y
Sbjct: 100 DIHALAAKLLQEN--DTTLVKTKELIKNY 126
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 42.8 bits (100), Expect = 2e-04
Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 20/125 (16%)
Query: 114 WLILSKVKQAMGLDRCRVS--LSGAAPISTELKRYF---LSLDIPICEVFGMSECAG-AH 167
L K + + + ++ G ++ + ++ + D +G + G +
Sbjct: 216 LRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSR 275
Query: 168 TVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEG-NGEICLKEYEANVRTVAK-AFLK 220
++ + + P +VD E G G + V ++ AF
Sbjct: 276 SLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI-------VTHLSPWAFYP 328
Query: 221 LGLER 225
ER
Sbjct: 329 RVAER 333
Score = 29.3 bits (65), Expect = 3.0
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAA 371
+ + GT GA K V+ I +
Sbjct: 96 VYESGGTTGAPKYVVAYDAWIEALIS 121
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite
reductase, NRFA, NAPC/NIRT family, membrane complex,
oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
vulgaris} PDB: 2vr0_C*
Length = 159
Score = 34.7 bits (79), Expect = 0.024
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHC 268
LG + A GM T+ C C
Sbjct: 22 LGVVALATVAFGMKYTDQRPFCTSC 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.42
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 283 KQLEKILKVKA--QCPKL--KAIVQ 303
K+L+ LK+ A P L KA ++
Sbjct: 23 KKLQASLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 5.7
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 442 QKIQKFE-----FLPADFSIPTGELGPTMK 466
Q ++K + + D S P + TM+
Sbjct: 20 QALKKLQASLKLYAD-D-SAPALAIKATME 47
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 31.9 bits (72), Expect = 0.53
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
A SLD V + + T + G H+++T +++ F
Sbjct: 316 EFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMT----LLVRNFGYPLGE 371
Query: 384 LSVISFLPLS 393
+S + P
Sbjct: 372 MSQPTPSPAP 381
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 30.2 bits (69), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 348 YTSGTEGASKPVMLSHDNI 366
+TSGT G K V +SHDN+
Sbjct: 152 FTSGTTGQPKGVQISHDNL 170
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 29.5 bits (67), Expect = 3.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 348 YTSGTEGASKPVMLSHDNIT 367
YTSG+ G K V +S N++
Sbjct: 182 YTSGSTGTPKGVRVSRHNLS 201
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 29.5 bits (67), Expect = 3.5
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES----AALSVISF 389
YTSGT G K + +H NI + Y ++S +F
Sbjct: 614 YTSGTTGKPKGNITTHANIQ-GLVKHVDYMAFSDQDTFLSVSNYAF 658
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 29.0 bits (66), Expect = 4.0
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
YTSGT G K ML H I+ +
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTE 222
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 28.6 bits (65), Expect = 4.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 348 YTSGTEGASKPVMLSHDNI 366
YTSG+ G K V ++++ +
Sbjct: 151 YTSGSTGNPKGVQITYNCL 169
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 28.6 bits (65), Expect = 5.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 348 YTSGTEGASKPVMLSHDNI 366
YTSG+ G K V +S N+
Sbjct: 150 YTSGSTGNPKGVQISAANL 168
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 28.6 bits (65), Expect = 5.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 348 YTSGTEGASKPVMLSHDNIT 367
++SGT G K + +H IT
Sbjct: 171 FSSGTTGRPKAIACTHAGIT 190
>2z2f_A Lysozyme C-2; stomach lysozyme, 1,4-beta-N-acetylmuramidase C,
bacteriolytic enzyme, hydrolase; 1.50A {Bos taurus}
Length = 129
Score = 27.3 bits (60), Expect = 5.7
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 214 VAKAFLKLGLERYHS------VCII----GFN--APEWFYSDLGAIYAGGFAAGMYTTNS 261
+A+ KLGL+ Y +C+ +N A + S G++ NS
Sbjct: 8 LARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSS------ESTDYGIFQINS 61
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG 306
C + + C V + +E + C K IV +G
Sbjct: 62 KWWCNDGKTPNAVDGCHVSCSELMENDIAKAVAC--AKHIVSEQG 104
>2vb1_A Lysozyme C; antimicrobial, triclinic HEWL, atomic resolution,
allergen, hydrolase, glycosidase, bacteriolytic enzyme;
HET: EDO; 0.65A {Gallus gallus} SCOP: d.2.1.2 PDB:
194l_A 1aki_A 1azf_A 1b0d_A* 1b2k_A 1bgi_A 1bhz_A 1bvk_C
1bvx_A 1bwh_A 1bwi_A 1bwj_A 1c08_C 1c10_A 1dpw_A 1dpx_A
1dqj_C 1e8l_A 1f0w_A 1f10_A ...
Length = 129
Score = 26.9 bits (59), Expect = 9.3
Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 214 VAKAFLKLGLERYHS------VCII----GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPE 263
+A A + GL+ Y VC FN G G+ NS
Sbjct: 8 LAAAMKRHGLDNYRGYSLGNWVCAAKFESNFN-----TQATNRNTDGSTDYGILQINSRW 62
Query: 264 ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK 297
C N+C + L + C K
Sbjct: 63 WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAK 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,444,299
Number of extensions: 448644
Number of successful extensions: 1086
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 75
Length of query: 486
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 389
Effective length of database: 3,993,456
Effective search space: 1553454384
Effective search space used: 1553454384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)