RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2842
(486 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 102 bits (255), Expect = 1e-23
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 11/243 (4%)
Query: 186 GTQTKIVDPDEEGNGEICL--KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ ++ + + +E +V A L LG+++ V I PE +
Sbjct: 86 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 145
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD-------KQLEKILKVKAQCP 296
L G + ++ SPEA C++ S + + + D+ L+K + + P
Sbjct: 146 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 205
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELGRAAPDE--SLDRVLETIATNECCTLVYTSGTEG 354
+ ++ I W E +L E S + E + + ++YTSG+ G
Sbjct: 206 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 265
Query: 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414
K V+ + AA +Y + + + +Y + AT
Sbjct: 266 KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 325
Query: 415 ADK 417
+
Sbjct: 326 FEG 328
Score = 57.7 bits (139), Expect = 2e-09
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 18/146 (12%)
Query: 119 KVKQAMGLDRCRVSLSGAAPISTELKRYFLSL----DIPICEVFGMSECAGAHTVSAPDD 174
K + R+ S PI+ E ++ P+ + + +E G P
Sbjct: 366 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 425
Query: 175 F--KLDGVGRTIPGTQTKIVDPDEE-----GNGEICLKEYEANVRTVAKAFLKLGLERYH 227
K R G Q +VD + G + + + A+ ER+
Sbjct: 426 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPG---QARTLFG-DHERFE 481
Query: 228 SVCIIGFNAPEWFYS-DLGAIYAGGF 252
F ++S D G+
Sbjct: 482 QTYFSTF--KNMYFSGDGARRDEDGY 505
Score = 28.1 bits (62), Expect = 3.2
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 44 LLGRTAAQYPDQVAL-CQKQENGEWKKVTYK 73
L R + D+ A+ + + + K ++Y+
Sbjct: 77 CLDRHLQENGDRTAIIWEGDDTSQSKHISYR 107
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 90.7 bits (224), Expect = 6e-20
Identities = 44/253 (17%), Positives = 81/253 (32%), Gaps = 11/253 (4%)
Query: 191 IVDPDEEGNGE-ICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIY 248
I + DE G G I KE V VA+ +G+ + +V + PE + L
Sbjct: 79 IFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 138
Query: 249 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKA 300
G + ++ S + + D+ + + D+ + + P ++
Sbjct: 139 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRH 198
Query: 301 IVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVM 360
++ Y + ++ + + + L+YTSG+ GA K V
Sbjct: 199 VLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQ 258
Query: 361 LSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA-TLWFADKNA 419
S A ++Y + + I T +Y + TL F A
Sbjct: 259 HSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPA 318
Query: 420 LKVYKATQAAIDR 432
Y ID
Sbjct: 319 YPNYSRYWDIIDE 331
Score = 46.8 bits (110), Expect = 4e-06
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 22/162 (13%)
Query: 106 PYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSL----DIPICEVFGMS 161
P RL++ S ++ L R S PI+ E+ ++ +IPI + + +
Sbjct: 341 PTALRLLKRAGDSYIENH-SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 399
Query: 162 ECAGAHTVSAPDDF---KLDGVGRTIPGTQTKIVDPD-------EEGNGEICLKEYEANV 211
E K G ++DP+ G + +K A
Sbjct: 400 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK---AAW 456
Query: 212 RTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
+ A+ K +RY + + P ++++ D A G+
Sbjct: 457 PSFARTIWK-NHDRYLDTYLNPY--PGYYFTGDGAAKDKDGY 495
Score = 31.0 bits (69), Expect = 0.32
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 44 LLGRTAAQYPDQVAL-CQKQENGEWKKVTYK 73
+ R A + P++ A+ + E G+ +TYK
Sbjct: 64 CVDRHALKTPNKKAIIFEGDEPGQGYSITYK 94
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 85.3 bits (210), Expect = 3e-18
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 2/184 (1%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 254
D I EY +A+A + GL H + + N+ ++F LGA++ G A
Sbjct: 41 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 100
Query: 255 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVI 314
+ L+ + S + V K L+KIL V+ + P ++ I+ + K D G
Sbjct: 101 PANDIYNERELLNSMNISQPTVVFV-SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 159
Query: 315 SWDELMELGRAAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACI 373
S + D V E+ ++ ++ +SG+ G K V L H +
Sbjct: 160 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 219
Query: 374 IQYF 377
Sbjct: 220 RDPI 223
Score = 51.8 bits (123), Expect = 1e-07
Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 13/222 (5%)
Query: 14 LLYTTEPHGRTRIHLGEAGVAAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK 73
++ ++ G + A + + +G T
Sbjct: 192 IMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLG 251
Query: 74 LQTTGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSL 133
G + + + + + + + + + + + ++
Sbjct: 252 YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 311
Query: 134 SGAAPISTELKRYFLSLDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIV 192
GA + +P I + +G++E A ++ D K VG+ +P + K+V
Sbjct: 312 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVV 371
Query: 193 DPDE------EGNGEICLK------EYEANVRTVAKAFLKLG 222
D D GE+C++ Y N K G
Sbjct: 372 DLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG 413
Score = 26.4 bits (57), Expect = 8.9
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 37 PPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK 73
+ L + +Y + +TY
Sbjct: 15 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYA 51
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 78.4 bits (192), Expect = 4e-16
Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 12/232 (5%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
G + + E R + LG+ V +GFN +
Sbjct: 25 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 84
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
G SP+ + L ++ + + D L + ++ + ++ V +
Sbjct: 85 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVL-LFDPNLLPLVEAIRGELKTVQHFVVMD 143
Query: 306 GKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN 365
K + + + L E C + YT+GT G K V+ SH
Sbjct: 144 EKAPEGYLAYEEALGEEADPVRVPERA----------ACGMAYTTGTTGLPKGVVYSHRA 193
Query: 366 ITFNAACIIQYFKLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
+ ++ + V + +P+ H+ A + + + A +
Sbjct: 194 LVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 245
Score = 51.8 bits (123), Expect = 1e-07
Identities = 24/195 (12%), Positives = 52/195 (26%), Gaps = 29/195 (14%)
Query: 77 TGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGA 136
G K+ + + + E + L L R + G
Sbjct: 236 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 295
Query: 137 APISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF-----------KLDGVGRTIP 185
+ L F + + + + +G++E + + G IP
Sbjct: 296 SAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIP 355
Query: 186 GTQTKIVDPD-------EEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPE 238
+ ++ D + + GE+ LK + + E S
Sbjct: 356 LVRLRVADEEGRPVPKDGKALGEVQLKGP-----WITGGYYGNE-EATRSA----LTPDG 405
Query: 239 WFYS-DLGAIYAGGF 252
+F + D+ G+
Sbjct: 406 FFRTGDIAVWDEEGY 420
Score = 35.3 bits (80), Expect = 0.018
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 37 PPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK 73
+++ L R AA + + + + GE + TY
Sbjct: 9 EELNLWDFLERAAALFGRKEVVSRL-HTGEVHRTTYA 44
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 63.5 bits (153), Expect = 2e-11
Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 8/219 (3%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
GN +E + +A F KLG+++ V + N E+F G
Sbjct: 47 GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106
Query: 258 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 317
++ + ++A ++ D + Q P +I
Sbjct: 107 PSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ--------SKLPTLKNIIVAG 158
Query: 318 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
E E + L + +++ L + G+ G SK + +HD+ ++ ++
Sbjct: 159 EAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
Query: 378 KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
L+ + + + + + + + V+ + +
Sbjct: 219 WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
Score = 27.3 bits (59), Expect = 4.9
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 40 SVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK 73
+ LL AA+Y D++A+ +Y+
Sbjct: 26 TFGDLLRDRAAKYGDRIAIT-----CGNTHWSYR 54
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 62.0 bits (149), Expect = 6e-11
Identities = 27/190 (14%), Positives = 50/190 (26%), Gaps = 18/190 (9%)
Query: 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAI 247
+ P + E A V VA GL V ++ N+ + + L
Sbjct: 18 HCALAVPAR--GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH 75
Query: 248 YAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK 307
G A + + + V+ +Q+ + Q I+
Sbjct: 76 RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDL 132
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
S+ +E + P + + YTSGT G K ++
Sbjct: 133 VRDGEPYSYGPPIEDPQREPA-------------QPAFIFYTSGTTGLPKAAIIPQRAAE 179
Query: 368 FNAACIIQYF 377
+
Sbjct: 180 SRVLFMSTQV 189
Score = 29.2 bits (64), Expect = 1.3
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 40 SVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK 73
+V +L R A + PD AL T+
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRL---THA 33
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 61.1 bits (147), Expect = 1e-10
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 22/180 (12%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
N ++ E +A+ F++ G+ + V I+ + + F L + AGG +
Sbjct: 45 ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 104
Query: 258 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 317
E + L S A + + + L +Q+ G+ + +
Sbjct: 105 IEYPKERIQYILDDSQARMLLTQKH------------LVHLIHNIQFNGQVEIFEEDTIK 152
Query: 318 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
P +S D ++YTSGT G K ML H I+
Sbjct: 153 IREGTNLHVPSKSTD----------LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL 202
Score = 27.9 bits (61), Expect = 2.9
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 40 SVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK 73
++ L ++ P+ VA+ + E ++TY
Sbjct: 24 TIHQLFEEQVSKRPNNVAIVCENE-----QLTYH 52
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Sandworm (Nereis diversicolor) [TaxId: 126592]}
Length = 174
Score = 37.3 bits (85), Expect = 0.001
Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 10/140 (7%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFY--SDLGAIYAGGF 252
D + +G I ++E+ AK + + + + I F
Sbjct: 16 DFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTF 75
Query: 253 AAGMYTTNSPEACLHCLVTS--------DANICVVEDDKQLEKILKVKAQCPKLKAIVQY 304
M + D N + + +
Sbjct: 76 INSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFD 135
Query: 305 EGKPDKPGVISWDELMELGR 324
+ G++S +E + G
Sbjct: 136 AIDTNNDGLLSLEEFVIAGS 155
>d2ipqx1 a.4.5.74 (X:396-528) Hypothetical protein STY4665
{Salmonella typhi [TaxId: 90370]}
Length = 133
Score = 29.1 bits (65), Expect = 0.61
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 25 RIHLGEAGVAAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIA 84
+HL V ISVPG+ + + +E+G ++V + R
Sbjct: 31 CVHLTCGFVF----ISVPGVFFLFLKSHS-RSCSSGLKESGRKEQVQAAFEKMRKHR--- 82
Query: 85 NYAKSTSLQHYMAYLEKNVSEPYTY-RLVRWLI 116
S S + + L + Y +L +LI
Sbjct: 83 ---VSDSRRFWQCCLYEEPGGRGRYKKLTGYLI 112
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica)
[TaxId: 5759]}
Length = 134
Score = 27.4 bits (59), Expect = 2.6
Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 7/129 (5%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 253
D G+G + +E +A V + L + S+ G + G
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQD 69
Query: 254 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGV 313
V D + E +K K+ V + + G
Sbjct: 70 LSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKH-----GIEKVAEQVM-KADANGDGY 123
Query: 314 ISWDELMEL 322
I+ +E +E
Sbjct: 124 ITLEEFLEF 132
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop
(Aequipecten irradians) [TaxId: 31199]}
Length = 152
Score = 26.9 bits (58), Expect = 3.7
Identities = 13/139 (9%), Positives = 39/139 (28%), Gaps = 3/139 (2%)
Query: 190 KIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 249
++ D + +G + + R + + +G + + Y
Sbjct: 14 ELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEK--SLPFEEFLPAYE 71
Query: 250 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQ-YEGKP 308
G T + + + L + + I++ + +
Sbjct: 72 GLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQE 131
Query: 309 DKPGVISWDELMELGRAAP 327
D G + +++ ++ A P
Sbjct: 132 DLEGNVKYEDFVKKVMAGP 150
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 108
Score = 25.6 bits (56), Expect = 6.0
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 18/102 (17%)
Query: 124 MGLDRCRVSLSGAAP-ISTELKRYFLSLDIPICEVFGMSECAGA---HTVSAPDDFKLDG 179
MG D + G + EL R ++ D+ EV E V+ L
Sbjct: 13 MGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYYDEIKRIFKEPKVTDNYSLSLK- 71
Query: 180 VGRTIPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKL 221
PD+EG + + E + N V K KL
Sbjct: 72 -------------LPDKEGIIKFLVDENDFNYDRVKKHVDKL 100
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli
[TaxId: 562]}
Length = 64
Score = 24.7 bits (54), Expect = 6.4
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 251 GFAAGMYTTNSPEA-CLHCLVTSDANICVVEDDKQLEKILKV 291
G ++ P + C S N+C + + E++++
Sbjct: 16 GVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQK 57
>d1juga_ d.2.1.2 (A:) Lysozyme {Australian echidna (Tachyglossus
aculeatus) [TaxId: 9261]}
Length = 125
Score = 26.0 bits (57), Expect = 6.7
Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 214 VAKAFLKLGLERYHS------VCII----GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPE 263
+ K + G+ Y VC +N G G+ NS
Sbjct: 8 LCKNLVAQGMNGYQHITLPNWVCTAFHESSYNT-----RATNHNTDGSTDYGILQINSRY 62
Query: 264 ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK 297
C N C + K L+ + +C K
Sbjct: 63 WCHDGKTPGSKNACNISCSKLLDDDITDDLKCAK 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,798,067
Number of extensions: 83689
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 25
Length of query: 486
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,185,626
Effective search space: 470693522
Effective search space used: 470693522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)