BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2844
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3
Length = 211
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY++KLI+FPR+ K +KG++T EE K+ATQL GP+MPI++ K KA
Sbjct: 108 ESLQANVQRLKEYRTKLIIFPRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVISEDEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2
Length = 211
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 78/99 (78%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++PEE K+ATQL GP+MPIR + KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVISEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2
SV=1
Length = 219
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+ESLQ+N+QRLKEY+++LI+FP+ KK+ KGEA EERK+ATQL+GPLMP++Q PKS
Sbjct: 106 VESLQVNVQRLKEYRARLILFPK--GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSI 163
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
AR +E EK F A+Q LR AR+ AKLVGIR K+ ++AA
Sbjct: 164 ARAITEEEKDFKAYQYLRGARSIAKLVGIRAKRLKDAA 201
>sp|Q56JZ1|RL13_BOVIN 60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3
Length = 211
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3
Length = 211
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4
Length = 211
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MP+R K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2
Length = 211
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3
Length = 211
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESL +N+QRLK Y+SKLI+FPR+ +KG++T EE K+ATQL GP+MPI+ K KA
Sbjct: 108 ESLHVNVQRLKVYRSKLILFPRKVSAP-KKGDSTEEEVKMATQLTGPVMPIKIVHKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EKKF+AF LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RMITEEEKKFNAFANLRMARANARLFGIRAKRAKEAAEQ 205
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3
Length = 211
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+M IR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMRIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>sp|P41126|RL13_DROME 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=2
SV=1
Length = 218
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 2/99 (2%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKS- 59
+ES Q NIQRLKEY+SKLI+FP EKK +R GE++ EE K+ATQLKGP++PI+ +P
Sbjct: 106 LESRQRNIQRLKEYRSKLILFPINEKK-IRAGESSLEECKLATQLKGPVLPIKNEQPAVV 164
Query: 60 KARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
+ R ++ EKKF AF TLR AR DA+LVGIR K+A+EAA
Sbjct: 165 EFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAKEAA 203
>sp|O46157|RL13_LUMRU 60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1
Length = 188
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+ESLQLN+QRLKEY+SKLI+FP++ K KG+AT EE K+ATQLKG L+P K
Sbjct: 83 VESLQLNVQRLKEYRSKLILFPKKLSKP-NKGDATEEEMKLATQLKGKLLPRTAWIKPEK 141
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
AR ++ E+K F LR ARA +L G R KKA+EA G+
Sbjct: 142 ARAITDEERKVKVFDRLRQARAHKRLAGKRAKKAKEAGGE 181
>sp|P91128|RL13_CAEEL 60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=3
SV=1
Length = 207
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E L+ N RLKEYK+KLI+FP++ +KG+++ EE KVA QL+G ++P+ + +
Sbjct: 108 EGLKANADRLKEYKAKLILFPKKASAP-KKGDSSAEELKVAAQLRGDVLPLSHTITFDEP 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
R ++AE+K F+ LR RAD K G REK+AREAA
Sbjct: 167 RQVTDAERKVEIFRLLRKERADKKYRGKREKRAREAA 203
>sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1
SV=1
Length = 206
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E LQ N+QRLK YK+KL++FPRR +K ++ G++TPEE ATQ++G +PI + KP +
Sbjct: 105 LEGLQTNVQRLKTYKTKLVIFPRRARK-VKAGDSTPEELANATQVQGDYLPIVREKPTME 163
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVG 88
+ K F AF +R+ R + + G
Sbjct: 164 LVKLTSEMKSFKAFDKIRLERTNKRHAG 191
>sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E LQ N+QRLK YK+KL++FPRR +K ++ G++T EE ATQ++G MPI + K ++
Sbjct: 105 LEGLQSNVQRLKTYKAKLVIFPRRARK-VKAGDSTAEELANATQVQGDYMPIVREKHATE 163
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREA 97
+ K AF +R+ R + + G R K+A +A
Sbjct: 164 LVKLTTEMKSVKAFDKIRLERTNKRHAGARAKRAADA 200
>sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1
Length = 206
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 64/98 (65%), Gaps = 3/98 (3%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPI-RQSKPKS 59
+E LQ N+QRLK YK+KL++FPRR +K ++ G++T EE ATQ++G MPI R+ +
Sbjct: 105 LEGLQSNVQRLKTYKAKLVIFPRRARK-VKAGDSTAEELANATQVQGDYMPIVREKQAME 163
Query: 60 KARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREA 97
++ SE K +A+ +R+ R + + G R K+A +A
Sbjct: 164 LVKLTSEM-KSVNAYDKIRLERTNKRHAGARAKRAADA 200
>sp|Q54E20|RL13_DICDI 60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=1
SV=1
Length = 209
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQS---KPK 58
+SL LN QRLK Y+SKL++FPR+ +KGEAT EE A Q P ++ + +
Sbjct: 106 QSLTLNTQRLKNYQSKLVLFPRKVNAP-KKGEATKEEVAKAVQTLKPFT-VKSAIAVTCE 163
Query: 59 SKARIPSEAEKKFSAFQTLRMARADAKLVGIR 90
R P+EAEKKFSA+ TL+ A + AK VGIR
Sbjct: 164 QTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195
>sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2
SV=1
Length = 206
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E LQ N+QRLK YK+KL+VFPRR ++++ G++TPEE ATQ++G MPI K +
Sbjct: 105 LEGLQSNVQRLKTYKAKLVVFPRRS-RQVKAGDSTPEELANATQVQGDYMPIASVKAAME 163
Query: 61 ARIPSEAEKKFSAFQTLRMARAD 83
+ K F A+ +R+ R +
Sbjct: 164 LVKLTADLKAFKAYDKIRLERTN 186
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1
Length = 184
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E LQ N+ RLK YK+KLI+FP K + +A +E K ATQL+ P++PI Q + K
Sbjct: 106 VEGLQRNVARLKAYKAKLILFPLNPAKP-QAMDAKADEVKKATQLRRPVLPITQRAKRLK 164
Query: 61 ARIPSEAEKKFSAFQTLR 78
A P+ +E ++SAF +R
Sbjct: 165 AHKPTSSELRYSAFHAIR 182
>sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80)
GN=RPL13 PE=2 SV=1
Length = 208
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E+LQ N+QRLK Y++ L++FPR KK + EA+ + A+Q KG L+P++ +KP +
Sbjct: 106 LETLQANVQRLKTYRASLVIFPRNMKKP-KAFEASAADCSAASQAKGELLPLKGTKPALE 164
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
+ K+ S + LR+ R +A+L G+REK+A + A +
Sbjct: 165 LVKITADMKEGSQYGKLRIERVNARLKGMREKRAADEAAK 204
>sp|P49627|RL13_TOBAC 60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1
Length = 202
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E LQ N+QRL++ + +L+VFPRR + R P ATQ+ G MPI + K +
Sbjct: 101 LEGLQTNVQRLEDLQGQLVVFPRRASRS-RLVILPPRNCLTATQVHGAYMPIEREKHQLI 159
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKK 93
+ K F+A+ LR+ R + + +G R K+
Sbjct: 160 LSKVLKKMKSFNAYAKLRVERTNERHIGARMKR 192
>sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana
GN=RPL13C PE=3 SV=1
Length = 206
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E Q N+QRLK YK+KL++FPR + ++ G++ +E ATQ++ MPI + P +
Sbjct: 105 LEGFQTNVQRLKTYKAKLVIFPRCA-RTVKVGDSAQQELANATQVQVDHMPIVREMPTME 163
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGI 89
+ K F+A+ +R+ + + G+
Sbjct: 164 LVKLTSDMKLFNAYDKIRLEGINKRHAGV 192
>sp|Q876B2|RL13_SACEX 60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3
SV=1
Length = 199
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E +LN+QRLKEY+SK+IVFPR K PE +V + PI Q +++
Sbjct: 107 EMFELNVQRLKEYQSKIIVFPRNGK--------VPETEQVLSTAAA--FPIAQPAVETET 156
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGI 89
R + + SA++TLRMAR++ + GI
Sbjct: 157 RAVQDNGE--SAYRTLRMARSEKRYKGI 182
>sp|Q12690|RL13A_YEAST 60S ribosomal protein L13-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13A PE=1 SV=1
Length = 199
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E N+QRLKEY+SK+IVFPR K PE +V + PI Q +A
Sbjct: 107 EIFDANVQRLKEYQSKIIVFPRNGK--------APEAEQVLS--AAATFPIAQPATDVEA 156
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKK 93
R + + SAF+TLR+AR++ K GIREK+
Sbjct: 157 RAVQDNGE--SAFRTLRLARSEKKFRGIREKR 186
>sp|P40212|RL13B_YEAST 60S ribosomal protein L13-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL13B PE=1 SV=1
Length = 199
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E N+QRLKEY+SK+IVFPR K PE +V + PI Q +A
Sbjct: 107 EIFDANVQRLKEYQSKIIVFPRDGK--------APEAEQVLS--AAATFPIAQPATDVEA 156
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKK 93
R + + SAF+TLR+AR++ K GIREK+
Sbjct: 157 RAVQDNGE--SAFRTLRLARSEKKFRGIREKR 186
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl13 PE=1 SV=1
Length = 208
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N++R+K Y + LIVFPR+ + +KG+AT T + ++PI Q +
Sbjct: 107 ESLQRNVERIKVYLAHLIVFPRKAGQP-KKGDATDVSGAEQTDVAA-VLPITQEAVEEAK 164
Query: 62 RIPSEAEKKFSAFQTL 77
I EA K F+AF TL
Sbjct: 165 PITEEA-KNFNAFSTL 179
>sp|O59931|RL13_CANAL 60S ribosomal protein L13 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RPL13 PE=3 SV=1
Length = 202
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 12/93 (12%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGE-ATPEERKVATQLKGPLMPIRQSKPKSK 60
E+ N+ RL+EYKSKL++F KK + E A+ E+ V+ P+ Q P+S
Sbjct: 107 ETFDANVARLQEYKSKLVIF----DKKTKASEVASFEQVDVSATF-----PVEQPAPESG 157
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKK 93
R E+ +A++TLR+AR + K GIREK+
Sbjct: 158 LRAVEVPEQ--TAYRTLRLARNEKKYKGIREKR 188
>sp|P0DJ58|RL13_TETTS 60S ribosomal protein L13 OS=Tetrahymena thermophila (strain SB210)
GN=RPL13 PE=1 SV=1
Length = 206
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKK 27
ESL+LN +RL Y SKL++FPR + K
Sbjct: 105 ESLELNKKRLLAYVSKLVLFPRHQGK 130
>sp|A9KIW5|GAHP2_CLOPH D-galactosyl-beta-1->3-N-acetyl-D-hexosamine phosphorylase Cphy0577
OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
18823 / ISDg) GN=Cphy_0577 PE=1 SV=1
Length = 723
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 38 ERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREA 97
E++V + + P I Q ++ RIPS+ K F AFQ +A+ ++V I + +EA
Sbjct: 253 EKEVGYRFR-PEFIIDQGYYNNQYRIPSKEFKDFQAFQRREVAKLAKEMVDITHEYGKEA 311
>sp|Q9USR3|STT4_SCHPO Phosphatidylinositol 4-kinase stt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=stt4 PE=3 SV=1
Length = 1877
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 43 TQLKGPLMP-IRQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAR 95
T + G L P IR+SKP+ KA+I E +K + D +VGI K +
Sbjct: 1515 TSISGKLKPFIRKSKPEKKAKIDEEMKKIKLDVGVYLPSNPDGVIVGIDRKSGK 1568
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,003,598
Number of Sequences: 539616
Number of extensions: 1042688
Number of successful extensions: 3666
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 3553
Number of HSP's gapped (non-prelim): 133
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)