Query psy2844
Match_columns 100
No_of_seqs 102 out of 258
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:20:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3295|consensus 100.0 5E-39 1.1E-43 241.1 6.3 99 1-100 104-202 (205)
2 PTZ00352 60S ribosomal protein 100.0 1.3E-36 2.8E-41 230.5 8.4 98 1-99 104-210 (212)
3 PTZ00192 60S ribosomal protein 100.0 1.2E-35 2.6E-40 225.8 8.1 92 1-98 111-211 (218)
4 PF01294 Ribosomal_L13e: Ribos 100.0 5.8E-31 1.3E-35 195.8 1.4 79 1-80 101-179 (179)
5 PF10587 EF-1_beta_acid: Eukar 43.3 15 0.00032 20.1 1.1 13 5-17 15-27 (28)
6 cd07576 R-amidase_like Pseudom 39.8 25 0.00055 25.7 2.2 23 2-24 12-41 (254)
7 cd07570 GAT_Gln-NAD-synth Glut 39.6 25 0.00054 25.9 2.2 23 3-25 13-42 (261)
8 cd07573 CPA N-carbamoylputresc 38.7 26 0.00056 26.2 2.2 22 3-24 13-41 (284)
9 cd07581 nitrilase_3 Uncharacte 36.2 28 0.00061 25.5 2.0 23 3-25 11-40 (255)
10 cd07574 nitrilase_Rim1_like Un 35.8 31 0.00067 25.8 2.2 24 2-25 14-44 (280)
11 PRK13286 amiE acylamide amidoh 35.3 32 0.0007 27.7 2.3 24 2-25 29-61 (345)
12 cd07584 nitrilase_6 Uncharacte 34.7 35 0.00076 25.1 2.3 23 3-25 13-42 (258)
13 PF00795 CN_hydrolase: Carbon- 34.4 43 0.00094 23.1 2.7 23 3-25 15-44 (186)
14 cd07565 aliphatic_amidase alip 33.4 36 0.00078 26.3 2.3 24 2-25 17-49 (291)
15 cd07582 nitrilase_4 Uncharacte 33.0 37 0.00079 25.9 2.2 24 2-25 17-52 (294)
16 cd07577 Ph0642_like Pyrococcus 32.7 38 0.00081 25.1 2.2 22 3-24 13-38 (259)
17 cd07587 ML_beta-AS mammalian-l 31.9 35 0.00075 27.6 2.0 23 2-24 83-112 (363)
18 KOG3357|consensus 29.5 31 0.00066 25.5 1.2 13 6-18 27-40 (167)
19 cd07567 biotinidase_like bioti 28.5 50 0.0011 26.0 2.4 22 3-24 21-49 (299)
20 PLN02504 nitrilase 27.5 51 0.0011 26.4 2.3 22 3-24 38-66 (346)
21 PF08259 Periviscerokin: Periv 27.1 23 0.0005 15.4 0.1 8 16-23 3-10 (11)
22 TIGR03381 agmatine_aguB N-carb 25.7 60 0.0013 24.1 2.3 21 4-24 14-41 (279)
23 cd07572 nit Nit1, Nit 2, and r 25.6 58 0.0013 23.9 2.2 23 3-25 12-41 (265)
24 cd07568 ML_beta-AS_like mammal 25.6 59 0.0013 24.4 2.2 22 3-24 24-52 (287)
25 PLN02747 N-carbamolyputrescine 25.6 58 0.0013 24.8 2.2 22 3-24 19-47 (296)
26 PRK10438 C-N hydrolase family 25.6 62 0.0014 24.3 2.3 22 3-24 17-43 (256)
27 PF01973 MAF_flag10: Protein o 24.2 61 0.0013 22.8 2.0 21 3-23 35-55 (170)
28 cd07197 nitrilase Nitrilase su 24.1 63 0.0014 23.2 2.1 24 2-25 11-41 (253)
29 cd07579 nitrilase_1_R2 Second 23.2 73 0.0016 24.4 2.4 23 3-25 12-41 (279)
30 cd07569 DCase N-carbamyl-D-ami 23.1 69 0.0015 24.5 2.2 22 3-24 19-47 (302)
31 cd07583 nitrilase_5 Uncharacte 22.9 74 0.0016 23.3 2.3 23 3-25 13-42 (253)
32 PRK13287 amiF formamidase; Pro 22.6 73 0.0016 25.4 2.3 24 2-25 30-62 (333)
33 cd07566 ScNTA1_like Saccharomy 22.2 74 0.0016 24.8 2.3 23 3-25 13-46 (295)
34 COG1582 FlgEa Uncharacterized 21.6 79 0.0017 20.4 1.9 22 1-22 41-62 (67)
35 cd07580 nitrilase_2 Uncharacte 21.3 81 0.0018 23.4 2.2 23 3-25 13-42 (268)
36 PF11324 DUF3126: Protein of u 20.5 82 0.0018 20.0 1.8 23 8-35 2-30 (63)
37 PLN02798 nitrilase 20.2 87 0.0019 23.8 2.2 22 3-24 23-51 (286)
No 1
>KOG3295|consensus
Probab=100.00 E-value=5e-39 Score=241.10 Aligned_cols=99 Identities=57% Similarity=0.881 Sum_probs=96.7
Q ss_pred ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHHHH
Q psy2844 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMA 80 (100)
Q Consensus 1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR~a 80 (100)
+|+||+||||||+|+||||||||++++| ++||||++|+..++|++|.+|||.+....++++.||+++++|+||++||++
T Consensus 104 ~E~lqaNvqRlKey~sklilfprk~~ap-kkGdSsaeel~~atq~~g~~mPi~~~~~~eEa~~~t~e~k~f~Af~~lr~a 182 (205)
T KOG3295|consen 104 QEGLQANVQRLKEYKSKLILFPRKASAP-KKGDSSAEELKLATQLTGPVMPIVNVYAKEEARVVTDEEKNFKAFRTLRLA 182 (205)
T ss_pred HHHHHHhHHHHHHhhcceEEeecCcCCC-cCCCCcHHHHHhhhhhcCCCcCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHhcC
Q psy2844 81 RADAKLVGIREKKAREAAGQ 100 (100)
Q Consensus 81 R~~~r~~G~R~kra~~~ae~ 100 (100)
|+|+||.|+|+||++|++|+
T Consensus 183 Ra~ar~~g~raKRa~Eaae~ 202 (205)
T KOG3295|consen 183 RANARLAGIRAKRAKEAAEE 202 (205)
T ss_pred HHHhHhhhHHHHHHHHHHHh
Confidence 99999999999999999874
No 2
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=100.00 E-value=1.3e-36 Score=230.48 Aligned_cols=98 Identities=40% Similarity=0.681 Sum_probs=94.6
Q ss_pred ChhHHHHHHHHHHHhhcceeeeCCcccccccC------CCCHHHHhh--hh-hhcCCcccCCCCCCCCccccCCcchhhc
Q psy2844 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKG------EATPEERKV--AT-QLKGPLMPIRQSKPKSKARIPSEAEKKF 71 (100)
Q Consensus 1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkg------ds~~ee~~~--a~-q~~~~v~Pi~~~~~~~~~r~It~eek~~ 71 (100)
+||||.||||||+|+|+||||||+.++| |+| |+|+||++. ++ |+.|.+|||.+..+.++++.||++|++|
T Consensus 104 ~Esl~~Nv~rLk~y~skLvlFPrk~~k~-kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~ 182 (212)
T PTZ00352 104 QESLNLNVKRLKAYLSKLVLFPRKGKKP-KKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAF 182 (212)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHh
Confidence 5999999999999999999999999999 999 999999998 77 8999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHhc
Q psy2844 72 SAFQTLRMARADAKLVGIREKKAREAAG 99 (100)
Q Consensus 72 ~Ay~~LR~aR~~~r~~G~R~kra~~~ae 99 (100)
+||++||+||+++|++|+|+|+++++++
T Consensus 183 ~Ay~tLR~aR~~ar~~G~r~kra~~k~~ 210 (212)
T PTZ00352 183 NAYRTLRQAKLNAKFVGKKEKKKQAKEK 210 (212)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 9999999999999999999999999875
No 3
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=100.00 E-value=1.2e-35 Score=225.82 Aligned_cols=92 Identities=36% Similarity=0.599 Sum_probs=87.6
Q ss_pred ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhh---------hcCCcccCCCCCCCCccccCCcchhhc
Q psy2844 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQ---------LKGPLMPIRQSKPKSKARIPSEAEKKF 71 (100)
Q Consensus 1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q---------~~~~v~Pi~~~~~~~~~r~It~eek~~ 71 (100)
+||||.||||||+|+|||||||+++++| ++||+++||++.++| +.|.+||| .++++.||++|++|
T Consensus 111 ~Esl~~Nv~rLk~Y~skLilFPrk~~k~-kkgds~~ee~k~a~Q~~~~~~~~~~~g~v~Pi-----~~~~~~it~eek~~ 184 (218)
T PTZ00192 111 EEGMNVNVQRLKTYMSKLVLFPMNHKKV-QKGEAKEEEVKAATQDRSRFGDAAVGGVVTPS-----REAPRVVSKEERSK 184 (218)
T ss_pred HHHHHHHHHHHHHHHHheeeeccccCCC-CCCCCCHHHHHHHHhhhcccccccccCccccc-----ccccccCCHHHHHh
Confidence 5999999999999999999999999999 999999999999999 56899999 47899999999999
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHh
Q psy2844 72 SAFQTLRMARADAKLVGIREKKAREAA 98 (100)
Q Consensus 72 ~Ay~~LR~aR~~~r~~G~R~kra~~~a 98 (100)
+||++||+||+++|++|+|+|||++++
T Consensus 185 ~Ay~~LR~aR~~~r~~G~r~krak~~~ 211 (218)
T PTZ00192 185 NVYAFLKKNHSAVRFFGVRSRRAARKE 211 (218)
T ss_pred hHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 999999999999999999999998875
No 4
>PF01294 Ribosomal_L13e: Ribosomal protein L13e; InterPro: IPR001380 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_U 4A1B_U 4A1D_U 4A19_U.
Probab=99.96 E-value=5.8e-31 Score=195.83 Aligned_cols=79 Identities=70% Similarity=0.988 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHHHH
Q psy2844 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMA 80 (100)
Q Consensus 1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR~a 80 (100)
+||||+||||||+|+|||||||++.++| |+||+++||++.|+|++|.+|||.+..+.++++.||+||++|+||++||+|
T Consensus 101 ~Esl~~Nv~RLkeY~sklilfPrk~~~~-kkGdss~ee~k~a~q~~~~v~Pi~~~~~~~~~r~it~eek~~~af~~LR~a 179 (179)
T PF01294_consen 101 EESLQANVQRLKEYKSKLILFPRKAKKP-KKGDSSAEELKLATQLKGPVMPIRKVKKKEKARAITEEEKKFSAFRTLRMA 179 (179)
T ss_dssp HHHHHHHHHHHHHHHHT-----SSS----TTT--TTHHHH-----HHHHS-----------HHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhceeecCccccc-cccCCCHHHHHHHHhhcCceeeecCCcCccccccCCHHHhhhhHHHHHhcC
Confidence 4899999999999999999999999999 999999999999999999999999999999999999999999999999986
No 5
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=43.27 E-value=15 Score=20.06 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhc
Q psy2844 5 QLNIQRLKEYKSK 17 (100)
Q Consensus 5 ~~NVqRLK~Yksk 17 (100)
..--+||++|.+|
T Consensus 15 r~reeRla~y~aK 27 (28)
T PF10587_consen 15 RIREERLAAYAAK 27 (28)
T ss_pred HHHHHHHHHHHcc
Confidence 3445899999876
No 6
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=39.82 E-value=25 Score=25.69 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHh-------hcceeeeCC
Q psy2844 2 ESLQLNIQRLKEYK-------SKLIVFPRR 24 (100)
Q Consensus 2 EsL~~NVqRLK~Yk-------skLIlFPrk 24 (100)
..++.|++|+.++. +.|||||--
T Consensus 12 ~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~ 41 (254)
T cd07576 12 GDVAANLARLDEAAARAAAAGADLLVFPEL 41 (254)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEccCc
Confidence 35778988887654 479999975
No 7
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=39.61 E-value=25 Score=25.94 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
..+.|++++.++. +.|||||--.
T Consensus 13 d~~~N~~~~~~~i~~A~~~gadlvvfPE~~ 42 (261)
T cd07570 13 DLEGNAEKILEAIREAKAQGADLVVFPELS 42 (261)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEccchh
Confidence 4578999998775 7999999854
No 8
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=38.72 E-value=26 Score=26.22 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhh-------cceeeeCC
Q psy2844 3 SLQLNIQRLKEYKS-------KLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yks-------kLIlFPrk 24 (100)
..+.|++++.++.. .|||||--
T Consensus 13 d~~~n~~~~~~~i~~A~~~gadlivfPE~ 41 (284)
T cd07573 13 DPEANLAKAEELVREAAAQGAQIVCLQEL 41 (284)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEcccc
Confidence 46789999999874 89999985
No 9
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=36.17 E-value=28 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhh-------cceeeeCCc
Q psy2844 3 SLQLNIQRLKEYKS-------KLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yks-------kLIlFPrk~ 25 (100)
.++.|++|+..+.. .|||||--.
T Consensus 11 d~~~n~~~~~~~i~~a~~~g~dlivfPE~~ 40 (255)
T cd07581 11 DKEENLEKVRRLLAEAAAAGADLVVFPEYT 40 (255)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEECcchh
Confidence 56889999888765 699999764
No 10
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=35.79 E-value=31 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHhh-------cceeeeCCc
Q psy2844 2 ESLQLNIQRLKEYKS-------KLIVFPRRE 25 (100)
Q Consensus 2 EsL~~NVqRLK~Yks-------kLIlFPrk~ 25 (100)
..++.|++++..|.. .|||||--.
T Consensus 14 ~~~~~n~~~i~~~i~~A~~~gadlivfPE~~ 44 (280)
T cd07574 14 ASFEEFAAKVEYWVAEAAGYGADLLVFPEYF 44 (280)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEECchHh
Confidence 356889998877654 699999854
No 11
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=35.26 E-value=32 Score=27.70 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHh---------hcceeeeCCc
Q psy2844 2 ESLQLNIQRLKEYK---------SKLIVFPRRE 25 (100)
Q Consensus 2 EsL~~NVqRLK~Yk---------skLIlFPrk~ 25 (100)
+.+..|++|+.... ..|||||=-.
T Consensus 29 ~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~ 61 (345)
T PRK13286 29 AEVLENARKIADMIVGMKQGLPGMDLVIFPEYS 61 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcc
Confidence 35788999997755 6899999753
No 12
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.66 E-value=35 Score=25.12 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
.++.|++++..+. ..|||||--.
T Consensus 13 d~~~n~~~~~~~i~~a~~~ga~liv~PE~~ 42 (258)
T cd07584 13 DVKANLKKAAELCKEAAAEGADLICFPELA 42 (258)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEccccc
Confidence 4678999988876 4799999753
No 13
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=34.43 E-value=43 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
.++.|.+++..+. ..|||||--.
T Consensus 15 ~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~ 44 (186)
T PF00795_consen 15 DPEENLKKILSLIEEAARQGADLVVFPEMA 44 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTTESEEEEETTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCcch
Confidence 4667777777764 7899999754
No 14
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=33.44 E-value=36 Score=26.29 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHh---------hcceeeeCCc
Q psy2844 2 ESLQLNIQRLKEYK---------SKLIVFPRRE 25 (100)
Q Consensus 2 EsL~~NVqRLK~Yk---------skLIlFPrk~ 25 (100)
+.++.|++++..+. +.|||||=-.
T Consensus 17 ~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ 49 (291)
T cd07565 17 EEVLENAERIADMVEGTKRGLPGMDLIVFPEYS 49 (291)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcc
Confidence 35678999886643 6999999754
No 15
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.97 E-value=37 Score=25.95 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHh------------hcceeeeCCc
Q psy2844 2 ESLQLNIQRLKEYK------------SKLIVFPRRE 25 (100)
Q Consensus 2 EsL~~NVqRLK~Yk------------skLIlFPrk~ 25 (100)
..++.|++++.++. +.|||||--.
T Consensus 17 ~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ 52 (294)
T cd07582 17 ADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYA 52 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccc
Confidence 35788999997752 6999999753
No 16
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.70 E-value=38 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhh----cceeeeCC
Q psy2844 3 SLQLNIQRLKEYKS----KLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yks----kLIlFPrk 24 (100)
.++.|++++..+.. .|||||--
T Consensus 13 d~~~N~~~~~~~i~~a~adlvvfPE~ 38 (259)
T cd07577 13 EVEKNLKKVESLIKGVEADLIVLPEL 38 (259)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEcccc
Confidence 46789999988774 79999974
No 17
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=31.92 E-value=35 Score=27.62 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHH-------hhcceeeeCC
Q psy2844 2 ESLQLNIQRLKEY-------KSKLIVFPRR 24 (100)
Q Consensus 2 EsL~~NVqRLK~Y-------kskLIlFPrk 24 (100)
+.++.|++|+..+ -+.|||||=-
T Consensus 83 ~d~~~nl~ki~~~i~~Aa~~gadLivfPE~ 112 (363)
T cd07587 83 EQREAIHDRIKKIIEAAAMAGVNIICFQEA 112 (363)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEEcccc
Confidence 3578999999887 3699999974
No 18
>KOG3357|consensus
Probab=29.50 E-value=31 Score=25.47 Aligned_cols=13 Identities=62% Similarity=0.869 Sum_probs=9.7
Q ss_pred HHHHHHHH-Hhhcc
Q psy2844 6 LNIQRLKE-YKSKL 18 (100)
Q Consensus 6 ~NVqRLK~-YkskL 18 (100)
+=|||||+ |+|=+
T Consensus 27 ~wvqrlkeey~sli 40 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLI 40 (167)
T ss_pred HHHHHHHHHHHHHH
Confidence 45899998 77743
No 19
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=28.47 E-value=50 Score=26.01 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCC
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk 24 (100)
..+.|++++..+. ..|||||=-
T Consensus 21 ~~~~Nl~~i~~~i~~A~~~gadLIVfPE~ 49 (299)
T cd07567 21 IMEKNLDIYEEIIKSAAKQGADIIVFPED 49 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEcccc
Confidence 4578999998775 699999974
No 20
>PLN02504 nitrilase
Probab=27.52 E-value=51 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCC
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk 24 (100)
.++.|++|+..+. +.|||||=-
T Consensus 38 d~~~nl~~~~~li~eAa~~gadLIVfPE~ 66 (346)
T PLN02504 38 DTPATLDKAERLIAEAAAYGSQLVVFPEA 66 (346)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEeCcc
Confidence 3678999977765 599999974
No 21
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=27.07 E-value=23 Score=15.41 Aligned_cols=8 Identities=75% Similarity=1.107 Sum_probs=5.8
Q ss_pred hcceeeeC
Q psy2844 16 SKLIVFPR 23 (100)
Q Consensus 16 skLIlFPr 23 (100)
|-||-|||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788887
No 22
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=25.65 E-value=60 Score=24.10 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHh-------hcceeeeCC
Q psy2844 4 LQLNIQRLKEYK-------SKLIVFPRR 24 (100)
Q Consensus 4 L~~NVqRLK~Yk-------skLIlFPrk 24 (100)
++.|++|+..+. +.|||||--
T Consensus 14 ~~~Nl~~~~~~i~~A~~~gadlivfPE~ 41 (279)
T TIGR03381 14 VETNIARAERLVREAAARGAQIILLPEL 41 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEcccc
Confidence 567888887765 579999975
No 23
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=25.64 E-value=58 Score=23.92 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
.+..|++++..+. +.|||||--.
T Consensus 12 d~~~n~~~~~~~i~~A~~~g~dlivfPE~~ 41 (265)
T cd07572 12 DKEANLARAKELIEEAAAQGAKLVVLPECF 41 (265)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECCccc
Confidence 4678888887765 5789999764
No 24
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=25.57 E-value=59 Score=24.41 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhh-------cceeeeCC
Q psy2844 3 SLQLNIQRLKEYKS-------KLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yks-------kLIlFPrk 24 (100)
..+.|++|+..+.. .|||||--
T Consensus 24 ~~~~nl~~~~~~i~~A~~~gadlvvfPE~ 52 (287)
T cd07568 24 QKEAMIQKHVTMIREAAEAGAQIVCLQEI 52 (287)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEcccc
Confidence 45678888877644 79999985
No 25
>PLN02747 N-carbamolyputrescine amidase
Probab=25.57 E-value=58 Score=24.76 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCC
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk 24 (100)
....|++|+..+. +.|||||--
T Consensus 19 d~~~N~~~i~~~i~~A~~~gadlvvfPE~ 47 (296)
T PLN02747 19 DRAANVDKAERLVREAHAKGANIILIQEL 47 (296)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEcccc
Confidence 4678888887665 689999986
No 26
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=25.56 E-value=62 Score=24.26 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHh-----hcceeeeCC
Q psy2844 3 SLQLNIQRLKEYK-----SKLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yk-----skLIlFPrk 24 (100)
..+.|++++..+. +.|||||=-
T Consensus 17 d~~~Nl~~~~~~i~~a~gadLivfPE~ 43 (256)
T PRK10438 17 DGPANLRHFDRQLEGITGRDVIVLPEM 43 (256)
T ss_pred CHHHHHHHHHHHHHhccCCCEEEeCCc
Confidence 3567999887776 469999974
No 27
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=24.22 E-value=61 Score=22.76 Aligned_cols=21 Identities=43% Similarity=0.536 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhhcceeeeC
Q psy2844 3 SLQLNIQRLKEYKSKLIVFPR 23 (100)
Q Consensus 3 sL~~NVqRLK~YkskLIlFPr 23 (100)
||+.|+.-||+++.+.+||=-
T Consensus 35 SL~~~i~~lk~~~~~~~iia~ 55 (170)
T PF01973_consen 35 SLDKNIELLKENRNKAIIIAV 55 (170)
T ss_pred CHHHHHHHHHhcccCcEEEEe
Confidence 899999999999999999843
No 28
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=24.10 E-value=63 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHhh-------cceeeeCCc
Q psy2844 2 ESLQLNIQRLKEYKS-------KLIVFPRRE 25 (100)
Q Consensus 2 EsL~~NVqRLK~Yks-------kLIlFPrk~ 25 (100)
..++.|++|+..+.. .|||||--.
T Consensus 11 ~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~ 41 (253)
T cd07197 11 GDVEANLAKALRLIKEAAEQGADLIVLPELF 41 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEcCCcc
Confidence 357889998887654 599999753
No 29
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.21 E-value=73 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
..+.|++++..+. +.|||||--.
T Consensus 12 d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ 41 (279)
T cd07579 12 DIAGNLATIDRLAAEAKATGAELVVFPELA 41 (279)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEeCCcc
Confidence 3578999987764 5899999753
No 30
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=23.12 E-value=69 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhh-------cceeeeCC
Q psy2844 3 SLQLNIQRLKEYKS-------KLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yks-------kLIlFPrk 24 (100)
..+.|++|+.++.+ .|||||--
T Consensus 19 ~~~~n~~~i~~~i~~A~~~gadlivfPE~ 47 (302)
T cd07569 19 TRESVVARLIALLEEAASRGAQLVVFPEL 47 (302)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEcccc
Confidence 46789999888765 79999974
No 31
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=22.87 E-value=74 Score=23.31 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
.++.|++++..+. ..|||||--.
T Consensus 13 d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~ 42 (253)
T cd07583 13 DPEANIERVESLIEEAAAAGADLIVLPEMW 42 (253)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCcc
Confidence 4678888887765 5799999753
No 32
>PRK13287 amiF formamidase; Provisional
Probab=22.64 E-value=73 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHhh---------cceeeeCCc
Q psy2844 2 ESLQLNIQRLKEYKS---------KLIVFPRRE 25 (100)
Q Consensus 2 EsL~~NVqRLK~Yks---------kLIlFPrk~ 25 (100)
+.++.|++++.++.. .|||||=-.
T Consensus 30 ~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~ 62 (333)
T PRK13287 30 ADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYS 62 (333)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcc
Confidence 457889999998753 699999753
No 33
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=22.16 E-value=74 Score=24.82 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHh-----------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-----------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-----------skLIlFPrk~ 25 (100)
..+.|++++.++. ..|||||--.
T Consensus 13 d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ 46 (295)
T cd07566 13 QVEENLSRAWELLDKTKKRAKLKKPDILVLPELA 46 (295)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCC
Confidence 4678999877653 4899999853
No 34
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=21.59 E-value=79 Score=20.44 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHHhhcceeee
Q psy2844 1 MESLQLNIQRLKEYKSKLIVFP 22 (100)
Q Consensus 1 ~EsL~~NVqRLK~YkskLIlFP 22 (100)
.||.+.=++|+.+|+-++..+-
T Consensus 41 kEsveEVi~kI~~y~rkI~~~~ 62 (67)
T COG1582 41 KESVEEVINKIIEYRRKIGSLA 62 (67)
T ss_pred cccHHHHHHHHHHHHHHhheeh
Confidence 4889999999999999988763
No 35
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.28 E-value=81 Score=23.42 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHhh-------cceeeeCCc
Q psy2844 3 SLQLNIQRLKEYKS-------KLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yks-------kLIlFPrk~ 25 (100)
....|++++..+.. .|||||--.
T Consensus 13 ~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~ 42 (268)
T cd07580 13 DLDANLARSIELIREAADAGANLVVLPELA 42 (268)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEcCCcc
Confidence 45778888877654 799999853
No 36
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.53 E-value=82 Score=20.03 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=15.3
Q ss_pred HHHHHHHhhcce------eeeCCcccccccCCCC
Q psy2844 8 IQRLKEYKSKLI------VFPRREKKKLRKGEAT 35 (100)
Q Consensus 8 VqRLK~YkskLI------lFPrk~~kp~kkgds~ 35 (100)
+.||..|+.++. |-|| | ++|||.
T Consensus 2 i~klq~yLr~~f~n~~i~v~~r----p-k~~dsa 30 (63)
T PF11324_consen 2 IKKLQAYLRRTFGNPGITVKAR----P-KKDDSA 30 (63)
T ss_pred hHHHHHHHHHHhCCCceEEEcC----C-CCCCce
Confidence 468899987754 4443 3 777864
No 37
>PLN02798 nitrilase
Probab=20.18 E-value=87 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCC
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk 24 (100)
.++.|++++..+. +.|||||--
T Consensus 23 d~~~N~~~~~~~i~~A~~~gadlvvfPE~ 51 (286)
T PLN02798 23 DLAANFATCSRLAKEAAAAGAKLLFLPEC 51 (286)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCC
Confidence 4678988887654 489999985
Done!