Query psy2844
Match_columns 100
No_of_seqs 102 out of 258
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:21:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_U RPL13, 60S ribosomal pr 100.0 3E-40 1E-44 248.6 4.2 99 1-100 104-204 (206)
2 3u5e_L 60S ribosomal protein L 100.0 3.4E-34 1.2E-38 214.6 6.9 88 1-100 106-193 (199)
3 4dac_A Computationally designe 64.1 3.7 0.00013 21.3 1.6 16 3-18 5-20 (28)
4 2fcg_F Cationic, antibacterial 35.6 21 0.00072 18.4 1.7 18 2-19 3-20 (26)
5 3fbi_A Mediator of RNA polymer 33.4 20 0.00069 22.9 1.7 13 5-17 26-38 (84)
6 3ivz_A Nitrilase; alpha-beta s 31.2 27 0.00091 24.9 2.3 23 3-25 15-44 (262)
7 3hkx_A Amidase; alpha-beta-BET 26.1 35 0.0012 24.8 2.2 23 3-25 34-63 (283)
8 3p8k_A Hydrolase, carbon-nitro 23.9 43 0.0015 24.2 2.3 23 3-25 34-63 (281)
9 1uf5_A N-carbamyl-D-amino acid 23.6 43 0.0015 24.1 2.2 24 2-25 18-48 (303)
10 2uxy_A Aliphatic amidase; nitr 22.4 43 0.0015 25.2 2.1 23 3-25 30-61 (341)
11 2e11_A Hydrolase; dimethylarse 21.3 53 0.0018 23.2 2.3 23 3-25 17-45 (266)
12 2dyu_A Formamidase; AMIF, CEK, 20.9 48 0.0016 24.8 2.1 23 3-25 31-62 (334)
13 1iie_A Protein (HLA-DR antigen 20.6 42 0.0014 21.2 1.4 14 2-15 27-40 (75)
No 1
>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U
Probab=100.00 E-value=3e-40 Score=248.55 Aligned_cols=99 Identities=31% Similarity=0.450 Sum_probs=96.3
Q ss_pred ChhHHHHHHHHHHHhhcceeeeCCcccccccC--CCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHH
Q psy2844 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKG--EATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 78 (100)
Q Consensus 1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkg--ds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR 78 (100)
+||||.||||||+|+||||||||++++| |+| |||+||++.|+|++|.+|||.++.+.++++.||+||++|+||++||
T Consensus 104 ~Esl~~Nv~rLk~y~sklIlFPrk~~k~-kkG~~Dss~ee~k~a~q~~g~vmPi~~~~~~~~~r~it~eek~~~ay~~LR 182 (206)
T 4a18_U 104 QESLELNKKRLLAYVSKLVLFPRHQGKA-KKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIAELRKKKVYRIIR 182 (206)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSSCCC-TTTTCCCTTHHHHCCCCCHHHHSCCCCCCCCCCCHHHHHHHTTSCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHheEEeeCccccc-ccCCCCCCHHHHHHHHHhcccccCccCcccccccccCChhhhcccHHHHHH
Confidence 4999999999999999999999999999 999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHhcC
Q psy2844 79 MARADAKLVGIREKKAREAAGQ 100 (100)
Q Consensus 79 ~aR~~~r~~G~R~kra~~~ae~ 100 (100)
+||+|+|++|+|+||++++||+
T Consensus 183 ~ar~~~r~~G~R~Kra~e~ae~ 204 (206)
T 4a18_U 183 QEKTNQKWDGKRKAKAQAAAEP 204 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhHHHHHHHHHHHHhhhc
Confidence 9999999999999999999885
No 2
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=100.00 E-value=3.4e-34 Score=214.64 Aligned_cols=88 Identities=44% Similarity=0.619 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHHHH
Q psy2844 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMA 80 (100)
Q Consensus 1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR~a 80 (100)
+||||.||||||+|+|||||||+++++| ++| ++|++|.+|||.++.+.++++.||+| +|+||++||+|
T Consensus 106 ~Esl~~NVqrLk~y~sklilFPrk~~~~-kkG---------atq~~g~vmPi~~~~~~~~~r~it~e--~~~ay~~LR~a 173 (199)
T 3u5e_L 106 QEIFDANVQRLKEYQSKIIVFPRNGKAP-EAE---------QVLSAAATFPIAQPATDVEARAVQDN--GESAFRTLRLA 173 (199)
T ss_dssp HHHHHHHHHHHHHHHHTEEECCSSSCCC-CCC---------CCCCSTTTSCCCCCCCSCSEECCCCC--CCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheeEeccccccc-ccc---------cccccccccccccccccccccccChh--hhhHHHHHHHH
Confidence 4899999999999999999999999999 999 68999999999999999999999999 99999999999
Q ss_pred HhhhhhhhhhHHHHHHHhcC
Q psy2844 81 RADAKLVGIREKKAREAAGQ 100 (100)
Q Consensus 81 R~~~r~~G~R~kra~~~ae~ 100 (100)
|+|+|++|+|+||++++||+
T Consensus 174 r~~~r~~G~R~Kra~e~ae~ 193 (199)
T 3u5e_L 174 RSEKKFRGIREKRAREKAEA 193 (199)
T ss_dssp HHHHHTHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 3
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=64.10 E-value=3.7 Score=21.28 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhhcc
Q psy2844 3 SLQLNIQRLKEYKSKL 18 (100)
Q Consensus 3 sL~~NVqRLK~YkskL 18 (100)
-|++||.||..--.||
T Consensus 5 kldanvkrlekevgkl 20 (28)
T 4dac_A 5 KLDANVKRLEKEVGKL 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhh
Confidence 4789999998765554
No 4
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=35.59 E-value=21 Score=18.36 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHhhcce
Q psy2844 2 ESLQLNIQRLKEYKSKLI 19 (100)
Q Consensus 2 EsL~~NVqRLK~YkskLI 19 (100)
++|+.=+||||.+.++|+
T Consensus 3 ~~~kkIgQkIkdFf~~l~ 20 (26)
T 2fcg_F 3 KEFKRIVQRIKDFLRNLV 20 (26)
T ss_dssp CSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 567788999999999986
No 5
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=33.45 E-value=20 Score=22.94 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhc
Q psy2844 5 QLNIQRLKEYKSK 17 (100)
Q Consensus 5 ~~NVqRLK~Yksk 17 (100)
..|++||.+|+..
T Consensus 26 ~eNl~kl~e~k~~ 38 (84)
T 3fbi_A 26 QSNLEKLPKYKEK 38 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999999863
No 6
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=31.25 E-value=27 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
.++.|++++.++. +.|||||--.
T Consensus 15 d~~~N~~~~~~~i~~A~~~gadlvvfPE~~ 44 (262)
T 3ivz_A 15 EPDKNYSKAEKLIKEASKQGAQLVVLPELF 44 (262)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEeCCCc
Confidence 4678999988765 5899999753
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=26.09 E-value=35 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
.++.|++++.++. +.|||||--.
T Consensus 34 d~~~N~~~~~~~i~~A~~~gadlvvfPE~~ 63 (283)
T 3hkx_A 34 DPQHNLDLIDDAAARASEQGAQLLLTPELF 63 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTTG
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCCc
Confidence 4678999987764 5799999764
No 8
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=23.85 E-value=43 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
..+.|++++.++. +.|||||--.
T Consensus 34 d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ 63 (281)
T 3p8k_A 34 DSSKNETQITQWFEKNMNAEVDVVVLPEMW 63 (281)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCCEEECCSST
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEcCCCc
Confidence 4678999888765 4799999753
No 9
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=23.57 E-value=43 Score=24.07 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHh-------hcceeeeCCc
Q psy2844 2 ESLQLNIQRLKEYK-------SKLIVFPRRE 25 (100)
Q Consensus 2 EsL~~NVqRLK~Yk-------skLIlFPrk~ 25 (100)
+.++.|++++.++. ..|||||=-.
T Consensus 18 ~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~ 48 (303)
T 1uf5_A 18 ETREQVVVRLLDMLTKAASRGANFIVFPELA 48 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 35778998888765 3799999754
No 10
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=22.39 E-value=43 Score=25.18 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHh---------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK---------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk---------skLIlFPrk~ 25 (100)
.++.|++++.++. ..|||||=-.
T Consensus 30 d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~ 61 (341)
T 2uxy_A 30 EVLDNARKIAEMIVGMKQGLPGMDLVVFPEYS 61 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECCTTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCc
Confidence 5678988887763 3799999754
No 11
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=21.31 E-value=53 Score=23.21 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHh------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk------skLIlFPrk~ 25 (100)
..+.|++++..+. +.|||||=-.
T Consensus 17 d~~~n~~~~~~~i~~a~~gadlvv~PE~~ 45 (266)
T 2e11_A 17 DPAGNRDYYGALLEPLAGQSDLVILPETF 45 (266)
T ss_dssp CHHHHHHHHHHHHGGGTTTCSEEECCTTT
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEECCCCc
Confidence 3578999888775 4699999753
No 12
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=20.92 E-value=48 Score=24.77 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHh---------hcceeeeCCc
Q psy2844 3 SLQLNIQRLKEYK---------SKLIVFPRRE 25 (100)
Q Consensus 3 sL~~NVqRLK~Yk---------skLIlFPrk~ 25 (100)
.++.|++++.++- ..|||||=-.
T Consensus 31 d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~ 62 (334)
T 2dyu_A 31 DIDHNIESIIRTLHATKAGYPGVELIIFPEYS 62 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECCTTT
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCc
Confidence 4678988887752 4799999753
No 13
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=20.55 E-value=42 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHh
Q psy2844 2 ESLQLNIQRLKEYK 15 (100)
Q Consensus 2 EsL~~NVqRLK~Yk 15 (100)
|||..|+++||.-+
T Consensus 27 ~sfl~NLk~LK~~m 40 (75)
T 1iie_A 27 GSFPENLRHLKNTM 40 (75)
T ss_dssp SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 78999999998643
Done!