Query psy2844
Match_columns 100
No_of_seqs 102 out of 258
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 18:21:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2844.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2844hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uf5a_ d.160.1.2 (A:) N-carba 66.0 1.4 0.0001 30.3 2.1 23 2-24 18-47 (303)
2 d1j31a_ d.160.1.2 (A:) Hypothe 48.7 4.4 0.00032 27.2 2.2 22 3-24 15-43 (262)
3 d1f89a_ d.160.1.1 (A:) hypothe 32.0 11 0.00081 24.9 2.1 22 3-24 23-53 (281)
4 d1luza_ b.40.4.5 (A:) Viral st 31.6 3.6 0.00026 25.2 -0.5 18 2-19 39-56 (85)
5 d1emsa2 d.160.1.1 (A:10-280) N 26.1 20 0.0014 23.6 2.5 22 3-24 18-46 (271)
6 d1iiea_ a.109.1.1 (A:) Class I 22.2 17 0.0013 21.5 1.4 13 2-14 27-39 (75)
7 d2in1a1 d.20.1.4 (A:3-164) Ufm 12.5 36 0.0027 22.6 1.2 17 6-22 25-41 (162)
8 d1k8rb_ d.15.1.5 (B:) Protein 11.6 55 0.004 19.8 1.9 25 15-45 70-94 (95)
9 d2ftxb1 d.300.1.2 (B:155-213) 10.8 56 0.0041 18.2 1.6 18 5-22 2-19 (59)
10 d1jjga_ b.40.4.5 (A:) Viral st 9.8 4.1 0.0003 25.6 -4.2 18 2-19 63-80 (102)
No 1
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}
Probab=66.01 E-value=1.4 Score=30.33 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHH-------hhcceeeeCC
Q psy2844 2 ESLQLNIQRLKEY-------KSKLIVFPRR 24 (100)
Q Consensus 2 EsL~~NVqRLK~Y-------kskLIlFPrk 24 (100)
|+.+.|++|+.++ -+.|||||=-
T Consensus 18 ~~~~~~l~r~~~li~~A~~~gadlvvfPE~ 47 (303)
T d1uf5a_ 18 ETREQVVVRLLDMLTKAASRGANFIVFPEL 47 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEECCTT
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcCCC
Confidence 5788999999887 4699999964
No 2
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=48.66 E-value=4.4 Score=27.18 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHh-------hcceeeeCC
Q psy2844 3 SLQLNIQRLKEYK-------SKLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yk-------skLIlFPrk 24 (100)
.++.|++++..|. +.|||||=-
T Consensus 15 d~e~nl~~i~~~i~~A~~~gadlvvfPE~ 43 (262)
T d1j31a_ 15 ELDKNYSKAEKLIKEASKEGAKLVVLPEL 43 (262)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCc
Confidence 5789999999887 469999963
No 3
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.00 E-value=11 Score=24.91 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHhh---------cceeeeCC
Q psy2844 3 SLQLNIQRLKEYKS---------KLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Yks---------kLIlFPrk 24 (100)
.++.|.+|+..|.. .|||||=-
T Consensus 23 D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~ 53 (281)
T d1f89a_ 23 DKMANLQRAATFIERAMKEQPDTKLVVLPEC 53 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTEEEEECCTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCEEEEcCCc
Confidence 36789999888742 39999973
No 4
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]}
Probab=31.64 E-value=3.6 Score=25.24 Aligned_cols=18 Identities=39% Similarity=0.822 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHhhcce
Q psy2844 2 ESLQLNIQRLKEYKSKLI 19 (100)
Q Consensus 2 EsL~~NVqRLK~YkskLI 19 (100)
++++.|..|+..|+.+||
T Consensus 39 dy~~~~~d~~~klk~kLV 56 (85)
T d1luza_ 39 ESVKMHMDRYVEYRDKLV 56 (85)
T ss_dssp GGSSCCHHHHHHHHHHHT
T ss_pred ehhhhhhHHHHHHHHHhc
Confidence 688999999999999998
No 5
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=26.09 E-value=20 Score=23.64 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHH-------hhcceeeeCC
Q psy2844 3 SLQLNIQRLKEY-------KSKLIVFPRR 24 (100)
Q Consensus 3 sL~~NVqRLK~Y-------kskLIlFPrk 24 (100)
.++.|.+++..+ .+.|||||=-
T Consensus 18 d~~~N~~~i~~~i~~A~~~gadlvvfPE~ 46 (271)
T d1emsa2 18 DLEKNFQAAKNMIERAGEKKCEMVFLPEC 46 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHHCcCeEEECCcc
Confidence 456788777654 4589999964
No 6
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.23 E-value=17 Score=21.50 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHH
Q psy2844 2 ESLQLNIQRLKEY 14 (100)
Q Consensus 2 EsL~~NVqRLK~Y 14 (100)
|||..|+++||.-
T Consensus 27 ~sf~~NLk~LK~~ 39 (75)
T d1iiea_ 27 GSFPENLRHLKNT 39 (75)
T ss_dssp SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7899999999864
No 7
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.46 E-value=36 Score=22.55 Aligned_cols=17 Identities=47% Similarity=0.520 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhcceeee
Q psy2844 6 LNIQRLKEYKSKLIVFP 22 (100)
Q Consensus 6 ~NVqRLK~YkskLIlFP 22 (100)
.=+|||||=-.-||-|-
T Consensus 25 ~W~~RLKEEy~aLI~Yv 41 (162)
T d2in1a1 25 LWVQRLKEEYQSLIRYV 41 (162)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35899998444466553
No 8
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=11.63 E-value=55 Score=19.82 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=16.9
Q ss_pred hhcceeeeCCcccccccCCCCHHHHhhhhhh
Q psy2844 15 KSKLIVFPRREKKKLRKGEATPEERKVATQL 45 (100)
Q Consensus 15 kskLIlFPrk~~kp~kkgds~~ee~~~a~q~ 45 (100)
+.+|||-|..+.-| +.+|+..+.|+
T Consensus 70 R~RLIL~~k~~~~P------~~~el~rs~~i 94 (95)
T d1k8rb_ 70 RDRLIIVPKEKPCP------SFEDLRRSWEI 94 (95)
T ss_dssp CCCEEEEESSSCCC------CHHHHHHTTCC
T ss_pred cCceEEEeCCCCCC------CHHHHHHhhcc
Confidence 46899988765444 56777776654
No 9
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.84 E-value=56 Score=18.22 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhcceeee
Q psy2844 5 QLNIQRLKEYKSKLIVFP 22 (100)
Q Consensus 5 ~~NVqRLK~YkskLIlFP 22 (100)
.+|+=|||=|+|==|.+-
T Consensus 2 d~~iLkLklYRSLGv~id 19 (59)
T d2ftxb1 2 NENILKLKLYRSLGVILD 19 (59)
T ss_dssp CHHHHHHHHHHHTTEEEE
T ss_pred CcceeeeeehhhccEEEe
Confidence 368999999999766553
No 10
>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma virus, m156r [TaxId: 10273]}
Probab=9.79 E-value=4.1 Score=25.64 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHhhcce
Q psy2844 2 ESLQLNIQRLKEYKSKLI 19 (100)
Q Consensus 2 EsL~~NVqRLK~YkskLI 19 (100)
|+++.|..|+..|+.+||
T Consensus 63 dY~n~~~dr~~klkkkLV 80 (102)
T d1jjga_ 63 DYLNYRQDTLDRLKERLV 80 (102)
T ss_dssp TTCCSSCCCCCHHHHHHT
T ss_pred ehhhhhHHHHHHHHHHhc
Confidence 678889999999999998
Done!