Your job contains 1 sequence.
>psy2844
MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK
ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2844
(100 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-031007-1 - symbol:rpl13 "ribosomal protein ... 301 9.4e-27 1
UNIPROTKB|P41125 - symbol:RPL13 "60S ribosomal protein L1... 300 1.2e-26 1
UNIPROTKB|F1MK30 - symbol:RPL13 "60S ribosomal protein L1... 292 8.4e-26 1
UNIPROTKB|Q56JZ1 - symbol:RPL13 "60S ribosomal protein L1... 292 8.4e-26 1
UNIPROTKB|E2R4F5 - symbol:RPL13 "Uncharacterized protein"... 292 8.4e-26 1
MGI|MGI:105922 - symbol:Rpl13 "ribosomal protein L13" spe... 292 8.4e-26 1
UNIPROTKB|P26373 - symbol:RPL13 "60S ribosomal protein L1... 291 1.1e-25 1
RGD|2322065 - symbol:LOC100360491 "60S ribosomal protein ... 288 2.2e-25 1
RGD|621179 - symbol:Rpl13 "ribosomal protein L13" species... 288 2.2e-25 1
UNIPROTKB|I3LSD3 - symbol:RPL13 "60S ribosomal protein L1... 286 3.6e-25 1
RGD|2320504 - symbol:LOC100361259 "60S ribosomal protein ... 283 7.6e-25 1
FB|FBgn0011272 - symbol:RpL13 "Ribosomal protein L13" spe... 277 3.3e-24 1
RGD|1563145 - symbol:RGD1563145 "similar to 60S ribosomal... 261 1.6e-22 1
UNIPROTKB|F1LUH3 - symbol:F1LUH3 "Uncharacterized protein... 212 2.5e-17 1
UNIPROTKB|F1LV25 - symbol:F1LV25 "Uncharacterized protein... 212 2.5e-17 1
TAIR|locus:2101283 - symbol:BBC1 "breast basic conserved ... 212 2.5e-17 1
WB|WBGene00004425 - symbol:rpl-13 species:6239 "Caenorhab... 210 4.1e-17 1
UNIPROTKB|F1M2E9 - symbol:F1M2E9 "60S ribosomal protein L... 205 1.4e-16 1
TAIR|locus:2172863 - symbol:AT5G23900 species:3702 "Arabi... 198 7.7e-16 1
RGD|1563194 - symbol:RGD1563194 "similar to ribosomal pro... 190 5.4e-15 1
DICTYBASE|DDB_G0291870 - symbol:rpl13 "S60 ribosomal prot... 186 1.4e-14 1
SGD|S000002240 - symbol:RPL13A "Ribosomal 60S subunit pro... 155 2.8e-11 1
SGD|S000004750 - symbol:RPL13B "Ribosomal 60S subunit pro... 154 3.5e-11 1
TAIR|locus:2101328 - symbol:AT3G48960 species:3702 "Arabi... 152 5.8e-11 1
UNIPROTKB|H3BUK8 - symbol:RPL13 "60S ribosomal protein L1... 145 3.2e-10 1
POMBASE|SPAC664.05 - symbol:rpl13 "60S ribosomal protein ... 142 6.6e-10 1
CGD|CAL0006157 - symbol:RPL13 species:5476 "Candida albic... 139 1.4e-09 1
UNIPROTKB|O59931 - symbol:RPL13 "60S ribosomal protein L1... 139 1.4e-09 1
UNIPROTKB|A4R6R9 - symbol:MGG_13645 "60S ribosomal protei... 138 1.8e-09 1
UNIPROTKB|F1PYD2 - symbol:F1PYD2 "Uncharacterized protein... 130 1.2e-08 1
UNIPROTKB|J3KS98 - symbol:RPL13 "60S ribosomal protein L1... 130 1.2e-08 1
ASPGD|ASPL0000067118 - symbol:AN7003 species:162425 "Emer... 125 7.0e-08 1
GENEDB_PFALCIPARUM|PF08_0075 - symbol:PF08_0075 "60S ribo... 102 2.6e-05 1
UNIPROTKB|Q8IAX6 - symbol:PF08_0075 "60S ribosomal protei... 102 2.6e-05 1
>ZFIN|ZDB-GENE-031007-1 [details] [associations]
symbol:rpl13 "ribosomal protein L13" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IMP]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
ZFIN:ZDB-GENE-031007-1 GO:GO:0006412 GO:GO:0005840 GO:GO:0051726
GO:GO:0003735 eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
HOVERGEN:HBG001156 OrthoDB:EOG4SJ5FX EMBL:AF385081 EMBL:AY561516
EMBL:BC075977 IPI:IPI00500626 RefSeq:NP_937786.1 UniGene:Dr.75569
STRING:Q90Z10 PRIDE:Q90Z10 Ensembl:ENSDART00000047391 GeneID:378961
KEGG:dre:378961 InParanoid:Q90Z10 NextBio:20813904
ArrayExpress:Q90Z10 Bgee:Q90Z10 Uniprot:Q90Z10
Length = 211
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 61/99 (61%), Positives = 79/99 (79%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY++KLI+FPR+ K +KG++T EE K+ATQL GP+MPI++ K KA
Sbjct: 108 ESLQANVQRLKEYRTKLIIFPRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVISEDEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>UNIPROTKB|P41125 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:D26318 IPI:IPI00586858 RefSeq:NP_990330.1
UniGene:Gga.4040 STRING:P41125 PRIDE:P41125
Ensembl:ENSGALT00000009974 GeneID:395849 KEGG:gga:395849
InParanoid:P41125 NextBio:20815916 Uniprot:P41125
Length = 211
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/99 (61%), Positives = 78/99 (78%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++PEE K+ATQL GP+MPIR + KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVISEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>UNIPROTKB|F1MK30 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9913 "Bos
taurus" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 OMA:PKYARTI IPI:IPI00705739
EMBL:DAAA02046269 Ensembl:ENSBTAT00000047320 Uniprot:F1MK30
Length = 293
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>UNIPROTKB|Q56JZ1 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722
EMBL:AY911336 IPI:IPI00705739 RefSeq:NP_001015543.1
UniGene:Bt.22248 STRING:Q56JZ1 PRIDE:Q56JZ1 GeneID:508221
KEGG:bta:508221 CTD:6137 HOVERGEN:HBG001156 InParanoid:Q56JZ1
OrthoDB:EOG4SJ5FX NextBio:20868415 Uniprot:Q56JZ1
Length = 211
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>UNIPROTKB|E2R4F5 [details] [associations]
symbol:RPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:AAEX03003953 RefSeq:XP_003434731.1 RefSeq:XP_536749.1
Ensembl:ENSCAFT00000031560 GeneID:479612 KEGG:cfa:479612
NextBio:20854772 Uniprot:E2R4F5
Length = 211
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>MGI|MGI:105922 [details] [associations]
symbol:Rpl13 "ribosomal protein L13" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 MGI:MGI:105922
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:U28917 EMBL:AK002787 EMBL:AK010989
EMBL:BC055358 IPI:IPI00224505 RefSeq:NP_058018.2 UniGene:Mm.319719
UniGene:Mm.391834 ProteinModelPortal:P47963 SMR:P47963
IntAct:P47963 STRING:P47963 PhosphoSite:P47963 PaxDb:P47963
PRIDE:P47963 Ensembl:ENSMUST00000000756 GeneID:270106
KEGG:mmu:270106 UCSC:uc009nue.2 InParanoid:P47963 NextBio:446939
Bgee:P47963 CleanEx:MM_RPL13 Genevestigator:P47963
GermOnline:ENSMUSG00000000740 GermOnline:ENSMUSG00000066315
Uniprot:P47963
Length = 211
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>UNIPROTKB|P26373 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0022626 "cytosolic ribosome"
evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006413 GO:GO:0003723
GO:GO:0003735 GO:GO:0006415 GO:GO:0006414 Reactome:REACT_1762
GO:GO:0006614 GO:GO:0022625 GO:GO:0019083 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
CTD:6137 HOVERGEN:HBG001156 OrthoDB:EOG4SJ5FX ChiTaRS:RPL13
EMBL:X64707 EMBL:AB062392 EMBL:AK297198 EMBL:AC092123 EMBL:BC004954
EMBL:BC007345 EMBL:BC007563 EMBL:BC007805 EMBL:BC010994
EMBL:BC013078 EMBL:BC014167 EMBL:BC020804 EMBL:BC027463
EMBL:BC063378 EMBL:BC093063 EMBL:BC106058 IPI:IPI00465361
IPI:IPI00978971 PIR:S23753 RefSeq:NP_000968.2 RefSeq:NP_001230059.1
RefSeq:NP_001230060.1 RefSeq:NP_150254.1 UniGene:Hs.410817
ProteinModelPortal:P26373 SMR:P26373 IntAct:P26373
MINT:MINT-1148895 STRING:P26373 PhosphoSite:P26373 DMDM:21903462
PaxDb:P26373 PeptideAtlas:P26373 PRIDE:P26373 DNASU:6137
Ensembl:ENST00000311528 Ensembl:ENST00000393099
Ensembl:ENST00000452368 Ensembl:ENST00000567815 GeneID:6137
KEGG:hsa:6137 UCSC:uc002fnm.2 GeneCards:GC16P089637 HGNC:HGNC:10303
HPA:HPA051702 MIM:113703 neXtProt:NX_P26373 PharmGKB:PA34670
InParanoid:P26373 PhylomeDB:P26373 GenomeRNAi:6137 NextBio:23839
PMAP-CutDB:P26373 ArrayExpress:P26373 Bgee:P26373 CleanEx:HS_RPL13
Genevestigator:P26373 GermOnline:ENSG00000167526 Uniprot:P26373
Length = 211
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 59/99 (59%), Positives = 77/99 (77%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MP+R K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>RGD|2322065 [details] [associations]
symbol:LOC100360491 "60S ribosomal protein L13-like"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:2322065 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 OMA:PKYARTI
OrthoDB:EOG4SJ5FX IPI:IPI00393399 RefSeq:XP_002725039.1
RefSeq:XP_002728169.1 PRIDE:D3ZRM9 Ensembl:ENSRNOT00000041303
GeneID:100360491 KEGG:rno:100360491 UCSC:RGD:2322065 Uniprot:D3ZRM9
Length = 211
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 60/99 (60%), Positives = 76/99 (76%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>RGD|621179 [details] [associations]
symbol:Rpl13 "ribosomal protein L13" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=NAS] [GO:0006412 "translation" evidence=NAS] [GO:0015934
"large ribosomal subunit" evidence=NAS] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO;NAS] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 RGD:621179
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352
HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 CTD:6137 HOVERGEN:HBG001156
OrthoDB:EOG4SJ5FX EMBL:X78327 EMBL:BC058143 IPI:IPI00230916
PIR:JC2368 RefSeq:NP_112363.1 UniGene:Rn.156566 UniGene:Rn.908
IntAct:P41123 STRING:P41123 PRIDE:P41123 Ensembl:ENSRNOT00000020635
GeneID:81765 KEGG:rno:81765 UCSC:RGD:621179 InParanoid:P41123
NextBio:615562 Genevestigator:P41123 GermOnline:ENSRNOG00000015335
Uniprot:P41123
Length = 211
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 60/99 (60%), Positives = 76/99 (76%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>UNIPROTKB|I3LSD3 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:FP325274 RefSeq:NP_001230274.1 UniGene:Ssc.769
Ensembl:ENSSSCT00000028682 GeneID:100628232 KEGG:ssc:100628232
Uniprot:I3LSD3
Length = 211
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 58/99 (58%), Positives = 77/99 (77%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR + KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKREKA 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R+ ++ EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITDEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205
>RGD|2320504 [details] [associations]
symbol:LOC100361259 "60S ribosomal protein L13-like"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:2320504 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02873
PANTHER:PTHR11722 OrthoDB:EOG4SJ5FX IPI:IPI00476506
RefSeq:XP_002725036.1 RefSeq:XP_002728163.1 PRIDE:D4A075
Ensembl:ENSRNOT00000046777 GeneID:100361259 KEGG:rno:100361259
OMA:QFMPIVR Uniprot:D4A075
Length = 210
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 60/99 (60%), Positives = 75/99 (75%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKEY SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 107 ESLQANVQRLKEYCSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 165
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 166 RAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 204
>FB|FBgn0011272 [details] [associations]
symbol:RpL13 "Ribosomal protein L13" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IDA;NAS] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0005840 "ribosome" evidence=IDA;NAS] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0000022 "mitotic spindle elongation"
evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
EMBL:AE014134 GO:GO:0051298 GO:GO:0005811 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0000022 eggNOG:COG4352 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 CTD:6137
EMBL:X77926 EMBL:BT053725 EMBL:BT128812 PIR:JC4260 PIR:S42877
RefSeq:NP_001033891.1 RefSeq:NP_523530.1 UniGene:Dm.21541
ProteinModelPortal:P41126 SMR:P41126 DIP:DIP-19420N IntAct:P41126
MINT:MINT-752357 STRING:P41126 PaxDb:P41126 PRIDE:P41126
EnsemblMetazoa:FBtr0079888 EnsemblMetazoa:FBtr0100164
EnsemblMetazoa:FBtr0310482 GeneID:34329 KEGG:dme:Dmel_CG4651
FlyBase:FBgn0011272 InParanoid:P41126 OrthoDB:EOG45HQDF
PhylomeDB:P41126 ChiTaRS:RPL13 GenomeRNAi:34329 NextBio:787975
Bgee:P41126 GermOnline:CG4651 Uniprot:P41126
Length = 218
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 60/99 (60%), Positives = 77/99 (77%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKS- 59
+ES Q NIQRLKEY+SKLI+FP EKK +R GE++ EE K+ATQLKGP++PI+ +P
Sbjct: 106 LESRQRNIQRLKEYRSKLILFPINEKK-IRAGESSLEECKLATQLKGPVLPIKNEQPAVV 164
Query: 60 KARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
+ R ++ EKKF AF TLR AR DA+LVGIR K+A+EAA
Sbjct: 165 EFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAKEAA 203
>RGD|1563145 [details] [associations]
symbol:RGD1563145 "similar to 60S ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
RGD:1563145 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 OrthoDB:EOG4SJ5FX
IPI:IPI00390829 RefSeq:XP_001068099.1 RefSeq:XP_575281.1
PRIDE:D3ZD02 Ensembl:ENSRNOT00000051343 GeneID:499937
KEGG:rno:499937 UCSC:RGD:1563145 CTD:499937 OMA:KACRIAP
NextBio:704484 Uniprot:D3ZD02
Length = 210
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 57/99 (57%), Positives = 71/99 (71%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRLKE++SKLI+FPR+ +KG ++ EE K+ATQL GP+MPIR K KA
Sbjct: 107 ESLQANVQRLKEFRSKLILFPRKPSAP-KKGGSSAEELKLATQLTGPVMPIRNVYKKEKA 165
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R +E EK F A +LRM RA A L GIR K+A+EAA Q
Sbjct: 166 RAITEEEKNFKASASLRMTRAKAWLFGIRAKRAKEAAEQ 204
>UNIPROTKB|F1LUH3 [details] [associations]
symbol:F1LUH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 IPI:IPI00389956 Ensembl:ENSRNOT00000039574
OMA:CANARLF Uniprot:F1LUH3
Length = 199
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 50/100 (50%), Positives = 67/100 (67%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+ESLQ N+Q LKEY KLI++P++ +KGE+ EE K+A QL GP+MP R K K
Sbjct: 97 IESLQANVQGLKEYCPKLILYPKKPSAP-QKGESCAEEFKLANQLTGPVMPFRMYK--EK 153
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
AR+ +E EK F F +L M A+A+L GI+ K A+EAA Q
Sbjct: 154 ARLITE-EKNFKDFVSLHMVCANARLFGIQAKMAKEAAEQ 192
>UNIPROTKB|F1LV25 [details] [associations]
symbol:F1LV25 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 IPI:IPI00947892 Ensembl:ENSRNOT00000018474
Uniprot:F1LV25
Length = 203
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 45/91 (49%), Positives = 63/91 (69%)
Query: 2 ESLQLNIQRLK-EYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
ESLQ N+QRLK Y+SKL++FPR+ +KG+++ EE K+ATQL GP+MPIR K K
Sbjct: 104 ESLQANVQRLKGSYRSKLLLFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEK 162
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGIRE 91
AR +E EK +F +LRMA +A+ ++E
Sbjct: 163 ARASTEEEKNLKSFASLRMAHDNAQAKRVKE 193
>TAIR|locus:2101283 [details] [associations]
symbol:BBC1 "breast basic conserved 1" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA;ISS;TAS] [GO:0006412 "translation"
evidence=IEA;ISS;TAS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0005886 GO:GO:0009506 GO:GO:0005774 GO:GO:0005618
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 EMBL:AL132967
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 EMBL:X75162 EMBL:AF428384
EMBL:AY050854 EMBL:AY065137 EMBL:AY079381 EMBL:AY081595
EMBL:AY084928 EMBL:Z34257 IPI:IPI00547367 PIR:S37271
RefSeq:NP_001030831.1 RefSeq:NP_190470.1 RefSeq:NP_850672.1
UniGene:At.22360 ProteinModelPortal:P41127 SMR:P41127 STRING:P41127
PaxDb:P41127 PRIDE:P41127 ProMEX:P41127 EnsemblPlants:AT3G49010.1
EnsemblPlants:AT3G49010.2 EnsemblPlants:AT3G49010.3 GeneID:824062
KEGG:ath:AT3G49010 GeneFarm:176 TAIR:At3g49010 eggNOG:COG4352
HOGENOM:HOG000170452 InParanoid:P41127 KO:K02873 OMA:LNPHFHK
PhylomeDB:P41127 ProtClustDB:CLSN2684222 Genevestigator:P41127
GermOnline:AT3G49010 PANTHER:PTHR11722 Uniprot:P41127
Length = 206
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 44/98 (44%), Positives = 66/98 (67%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E LQ N+QRLK YK+KL++FPRR +K ++ G++TPEE ATQ++G +PI + KP +
Sbjct: 105 LEGLQTNVQRLKTYKTKLVIFPRRARK-VKAGDSTPEELANATQVQGDYLPIVREKPTME 163
Query: 61 -ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREA 97
++ SE K F AF +R+ R + + G R K+A EA
Sbjct: 164 LVKLTSEM-KSFKAFDKIRLERTNKRHAGARAKRAAEA 200
>WB|WBGene00004425 [details] [associations]
symbol:rpl-13 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006412
GO:GO:0000003 GO:GO:0005840 GO:GO:0003735 EMBL:FO080749
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873 OMA:LNPHFHK
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 PIR:T25599
RefSeq:NP_001021017.1 RefSeq:NP_001021018.1
ProteinModelPortal:P91128 SMR:P91128 DIP:DIP-25306N
MINT:MINT-1074454 STRING:P91128 PaxDb:P91128 PRIDE:P91128
EnsemblMetazoa:C32E8.2a.1 EnsemblMetazoa:C32E8.2a.2 GeneID:171949
KEGG:cel:CELE_C32E8.2 UCSC:C32E8.2a.1 CTD:171949 WormBase:C32E8.2a
WormBase:C32E8.2b InParanoid:P91128 NextBio:873371 Uniprot:P91128
Length = 207
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 45/97 (46%), Positives = 65/97 (67%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E L+ N RLKEYK+KLI+FP++ +KG+++ EE KVA QL+G ++P+ + +
Sbjct: 108 EGLKANADRLKEYKAKLILFPKKASAP-KKGDSSAEELKVAAQLRGDVLPLSHTITFDEP 166
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
R ++AE+K F+ LR RAD K G REK+AREAA
Sbjct: 167 RQVTDAERKVEIFRLLRKERADKKYRGKREKRAREAA 203
>UNIPROTKB|F1M2E9 [details] [associations]
symbol:F1M2E9 "60S ribosomal protein L13" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722
GeneTree:ENSGT00390000007818 IPI:IPI00950963
Ensembl:ENSRNOT00000064713 Uniprot:F1M2E9
Length = 165
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 49/93 (52%), Positives = 63/93 (67%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N+QRL EY+SKLI+FPR+ +KG+++ EE K+ATQL GP+MPIR K KA
Sbjct: 85 ESLQANMQRLNEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 143
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKA 94
R +E RMARA+A+L GIR K+A
Sbjct: 144 RAITE-----------RMARANARLFGIRAKRA 165
>TAIR|locus:2172863 [details] [associations]
symbol:AT5G23900 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IDA] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016020 GO:GO:0006412 EMBL:AB005244
GO:GO:0003735 GO:GO:0022625 eggNOG:COG4352 HOGENOM:HOG000170452
KO:K02873 ProtClustDB:CLSN2684222 PANTHER:PTHR11722 EMBL:AF378895
EMBL:AY052746 IPI:IPI00535397 RefSeq:NP_197778.1 UniGene:At.8750
ProteinModelPortal:Q9FF90 SMR:Q9FF90 STRING:Q9FF90 PaxDb:Q9FF90
PRIDE:Q9FF90 EnsemblPlants:AT5G23900.1 GeneID:832455
KEGG:ath:AT5G23900 TAIR:At5g23900 InParanoid:Q9FF90 OMA:PIRIVRC
PhylomeDB:Q9FF90 Genevestigator:Q9FF90 GermOnline:AT5G23900
Uniprot:Q9FF90
Length = 206
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 42/98 (42%), Positives = 65/98 (66%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E LQ N+QRLK YK+KL+VFPRR ++ ++ G++TPEE ATQ++G MPI K +
Sbjct: 105 LEGLQSNVQRLKTYKAKLVVFPRRSRQ-VKAGDSTPEELANATQVQGDYMPIASVKAAME 163
Query: 61 -ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREA 97
++ ++ K F A+ +R+ R +A+ G R K+A EA
Sbjct: 164 LVKLTADL-KAFKAYDKIRLERTNARHAGARAKRAAEA 200
>RGD|1563194 [details] [associations]
symbol:RGD1563194 "similar to ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001380 Pfam:PF01294 RGD:1563194 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722 OrthoDB:EOG4SJ5FX
IPI:IPI00360566 Ensembl:ENSRNOT00000032427 Uniprot:D3ZFF0
Length = 223
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 45/89 (50%), Positives = 58/89 (65%)
Query: 2 ESLQLNIQRLKE-YKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+SLQ +Q LKE Y+SKLI FPR+ +KG+ + EE K+A QL GP+MPIR K K
Sbjct: 107 KSLQAKVQHLKEGYRSKLIRFPRKPSAP-KKGDRSAEEFKLAIQLTGPVMPIRNVYKKVK 165
Query: 61 ARIPSEAEKKFSAFQTLRMARADAKLVGI 89
R + F AF +LRMARA+A+L GI
Sbjct: 166 GR-SHHRRRTFKAFASLRMARANARLFGI 193
>DICTYBASE|DDB_G0291870 [details] [associations]
symbol:rpl13 "S60 ribosomal protein L13"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
dictyBase:DDB_G0291870 GenomeReviews:CM000155_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000186 eggNOG:COG4352
KO:K02873 OMA:LNPHFHK PANTHER:PTHR11722 RefSeq:XP_629876.1
STRING:Q54E20 PRIDE:Q54E20 EnsemblProtists:DDB0229951
GeneID:8628374 KEGG:ddi:DDB_G0291870 ProtClustDB:PTZ00352
Uniprot:Q54E20
Length = 209
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 47/102 (46%), Positives = 62/102 (60%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKP---K 58
+SL LN QRLK Y+SKL++FPR+ +KGEAT EE A Q P ++ + +
Sbjct: 106 QSLTLNTQRLKNYQSKLVLFPRKVNAP-KKGEATKEEVAKAVQTLKPFT-VKSAIAVTCE 163
Query: 59 SKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
R P+EAEKKFSA+ TL+ A + AK VGIR K A A +
Sbjct: 164 QTPRKPTEAEKKFSAYATLKAADSKAKTVGIRRKAAEIKAAK 205
>SGD|S000002240 [details] [associations]
symbol:RPL13A "Ribosomal 60S subunit protein L13A"
species:4932 "Saccharomyces cerevisiae" [GO:0006412 "translation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;TAS] [GO:0002181 "cytoplasmic translation"
evidence=TAS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
SGD:S000002240 EMBL:BK006938 GO:GO:0003735 GO:GO:0002181 PDB:4B6A
PDBsum:4B6A GO:GO:0022625 PDB:3U5E PDB:3U5I PDBsum:3U5E PDBsum:3U5I
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
EMBL:Z74130 PIR:S67618 RefSeq:NP_010201.1 ProteinModelPortal:Q12690
SMR:Q12690 IntAct:Q12690 MINT:MINT-2981666 STRING:Q12690
PaxDb:Q12690 PeptideAtlas:Q12690 EnsemblFungi:YDL082W GeneID:851477
KEGG:sce:YDL082W CYGD:YDL082w GeneTree:ENSGT00390000007818
OMA:PKYARTI OrthoDB:EOG415KPR NextBio:968783 Genevestigator:Q12690
GermOnline:YDL082W Uniprot:Q12690
Length = 199
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 43/97 (44%), Positives = 57/97 (58%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E N+QRLKEY+SK+IVFPR G+A PE +V + PI Q +A
Sbjct: 107 EIFDANVQRLKEYQSKIIVFPRN-------GKA-PEAEQVLSA--AATFPIAQPATDVEA 156
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
R + + SAF+TLR+AR++ K GIREK+ARE A
Sbjct: 157 RAVQDNGE--SAFRTLRLARSEKKFRGIREKRAREKA 191
>SGD|S000004750 [details] [associations]
symbol:RPL13B "Ribosomal 60S subunit protein L13B"
species:4932 "Saccharomyces cerevisiae" [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=TAS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
SGD:S000004750 EMBL:BK006946 GO:GO:0003735 GO:GO:0002181
EMBL:Z47071 GO:GO:0022625 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 GeneTree:ENSGT00390000007818
OrthoDB:EOG415KPR PIR:S50398 RefSeq:NP_013862.1
ProteinModelPortal:P40212 SMR:P40212 DIP:DIP-2591N IntAct:P40212
MINT:MINT-425636 STRING:P40212 PeptideAtlas:P40212
EnsemblFungi:YMR142C GeneID:855173 KEGG:sce:YMR142C CYGD:YMR142c
NextBio:978614 Genevestigator:P40212 GermOnline:YMR142C
Uniprot:P40212
Length = 199
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 43/97 (44%), Positives = 57/97 (58%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E N+QRLKEY+SK+IVFPR G+A PE +V + PI Q +A
Sbjct: 107 EIFDANVQRLKEYQSKIIVFPR-------DGKA-PEAEQVLSA--AATFPIAQPATDVEA 156
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
R + + SAF+TLR+AR++ K GIREK+ARE A
Sbjct: 157 RAVQDNGE--SAFRTLRLARSEKKFRGIREKRAREKA 191
>TAIR|locus:2101328 [details] [associations]
symbol:AT3G48960 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294
PROSITE:PS01104 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL132967 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625
eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
ProtClustDB:CLSN2684222 PANTHER:PTHR11722 IPI:IPI00517323
PIR:T46134 RefSeq:NP_190465.1 UniGene:At.53843
ProteinModelPortal:Q9SMT4 SMR:Q9SMT4 STRING:Q9SMT4
EnsemblPlants:AT3G48960.1 GeneID:824057 KEGG:ath:AT3G48960
GeneFarm:186 TAIR:At3g48960 InParanoid:Q9SMT4 PhylomeDB:Q9SMT4
Genevestigator:Q9SMT4 GermOnline:AT3G48960 Uniprot:Q9SMT4
Length = 206
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 34/98 (34%), Positives = 60/98 (61%)
Query: 1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
+E Q N+QRLK YK+KL++FPR + ++ G++ +E ATQ++ MPI + P +
Sbjct: 105 LEGFQTNVQRLKTYKAKLVIFPRCART-VKVGDSAQQELANATQVQVDHMPIVREMPTME 163
Query: 61 -ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREA 97
++ S+ K F+A+ +R+ + + G+R K+A EA
Sbjct: 164 LVKLTSDM-KLFNAYDKIRLEGINKRHAGVRAKRAAEA 200
>UNIPROTKB|H3BUK8 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001380 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722 ChiTaRS:RPL13
EMBL:AC092123 HGNC:HGNC:10303 Ensembl:ENST00000563270 Bgee:H3BUK8
Uniprot:H3BUK8
Length = 54
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/51 (58%), Positives = 38/51 (74%)
Query: 50 MPIRQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
MP+R K KAR+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 1 MPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 51
>POMBASE|SPAC664.05 [details] [associations]
symbol:rpl13 "60S ribosomal protein L13 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISO] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 PomBase:SPAC664.05
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0022625 HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
OrthoDB:EOG415KPR EMBL:AB016216 PIR:T43385 RefSeq:NP_593453.1
IntAct:O74175 STRING:O74175 EnsemblFungi:SPAC664.05.1
GeneID:2543553 KEGG:spo:SPAC664.05 OMA:QPARKER NextBio:20804562
Uniprot:O74175
Length = 208
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 40/100 (40%), Positives = 56/100 (56%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESLQ N++R+K Y + LIVFPR+ + +KG+AT T + ++PI Q +
Sbjct: 107 ESLQRNVERIKVYLAHLIVFPRKAGQP-KKGDATDVSGAEQTDVAA-VLPITQEAVEEAK 164
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIR----EKKAREA 97
I EA K F+AF TL RA A+ G R +K+A EA
Sbjct: 165 PITEEA-KNFNAFSTLSNERAYARYAGARAAFQKKRAEEA 203
>CGD|CAL0006157 [details] [associations]
symbol:RPL13 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=IDA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
CGD:CAL0006157 EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL033497
eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722 EMBL:AF050672
EMBL:U80854 PIR:T52146 RefSeq:XP_721220.1 RefSeq:XP_721492.1
STRING:O59931 GeneID:3636841 GeneID:3637128 KEGG:cal:CaO19.10511
KEGG:cal:CaO19.2994 Uniprot:O59931
Length = 202
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E+ N+ RL+EYKSKL++F +KK A+ E+ V+ P+ Q P+S
Sbjct: 107 ETFDANVARLQEYKSKLVIF---DKKTKASEVASFEQVDVSATF-----PVEQPAPESGL 158
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
R E+ +A++TLR+AR + K GIREK+A+E A
Sbjct: 159 RAVEVPEQ--TAYRTLRLARNEKKYKGIREKRAKEKA 193
>UNIPROTKB|O59931 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:237561
"Candida albicans SC5314" [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
CGD:CAL0006157 EMBL:AACQ01000017 EMBL:AACQ01000015 GO:GO:0009986
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL033497
eggNOG:COG4352 KO:K02873 PANTHER:PTHR11722 EMBL:AF050672
EMBL:U80854 PIR:T52146 RefSeq:XP_721220.1 RefSeq:XP_721492.1
STRING:O59931 GeneID:3636841 GeneID:3637128 KEGG:cal:CaO19.10511
KEGG:cal:CaO19.2994 Uniprot:O59931
Length = 202
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
E+ N+ RL+EYKSKL++F +KK A+ E+ V+ P+ Q P+S
Sbjct: 107 ETFDANVARLQEYKSKLVIF---DKKTKASEVASFEQVDVSATF-----PVEQPAPESGL 158
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
R E+ +A++TLR+AR + K GIREK+A+E A
Sbjct: 159 RAVEVPEQ--TAYRTLRLARNEKKYKGIREKRAKEKA 193
>UNIPROTKB|A4R6R9 [details] [associations]
symbol:MGG_13645 "60S ribosomal protein L13" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001380
InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0043581 EMBL:CM001234 KO:K02873
PANTHER:PTHR11722 OrthoDB:EOG415KPR RefSeq:XP_003717580.1
EnsemblFungi:MGG_13645T0 GeneID:2680716 KEGG:mgr:MGG_13645
Uniprot:A4R6R9
Length = 202
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 39/99 (39%), Positives = 61/99 (61%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESL N++RLK YK+KL+V P++ KK + T K++ + P++P SK+
Sbjct: 107 ESLARNVERLKAYKAKLVVMPKKGKKP-EVADKTAH--KISAVV--PIVPPVGVTEISKS 161
Query: 62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
IP +++K SA++ LR ARA+A+ G REK+ RE A +
Sbjct: 162 DIP-KSDK--SAYRQLREARANARHEGKREKRVREKADE 197
>UNIPROTKB|F1PYD2 [details] [associations]
symbol:F1PYD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001380
Pfam:PF01294 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR11722 GeneTree:ENSGT00390000007818 EMBL:AAEX03009117
Ensembl:ENSCAFT00000003742 OMA:CLAANIN Uniprot:F1PYD2
Length = 178
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
ESL+ +++ LK+Y + I+ P + KG+ + EE K+ATQL +MPI+ K +
Sbjct: 85 ESLEADLEGLKKYLYRFIL-PLKPLAP-EKGDISAEELKLATQLAEQVMPIQNVYKKERV 142
Query: 62 RI-PSEAEKKFSAFQTLRMARADAKLVGIREKKAREA 97
RI P E+ F F +L MA + + GIR K+ EA
Sbjct: 143 RIIPGES---FQGFASLCMAHTNTQPFGIRAKRVMEA 176
>UNIPROTKB|J3KS98 [details] [associations]
symbol:RPL13 "60S ribosomal protein L13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001380 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR11722 ChiTaRS:RPL13
EMBL:AC092123 HGNC:HGNC:10303 Ensembl:ENST00000472354
Uniprot:J3KS98
Length = 78
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 58 KSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
K KAR+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 30 KEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 72
>ASPGD|ASPL0000067118 [details] [associations]
symbol:AN7003 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:BN001304
EMBL:AACD01000117 eggNOG:COG4352 HOGENOM:HOG000170452 KO:K02873
OMA:LNPHFHK PANTHER:PTHR11722 OrthoDB:EOG415KPR RefSeq:XP_664607.1
STRING:Q5AXH7 EnsemblFungi:CADANIAT00000473 GeneID:2869986
KEGG:ani:AN7003.2 Uniprot:Q5AXH7
Length = 226
Score = 125 (49.1 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 37/113 (32%), Positives = 65/113 (57%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVA---------TQ----LKGP 48
ESL N+ RLK+YK++LI+FPR+ + +K ++T EE A TQ G
Sbjct: 107 ESLVANVARLKDYKARLIIFPRKSGQ-FKKTDSTAEEVNAAKAAFAAEGQTQGYATNVGA 165
Query: 49 LMPIRQSKPK---SKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
++PI+ + + ++ + + + +A++ LR AR++A+ GIREK+A+ A
Sbjct: 166 ILPIKNTTAEEAVTEVKRDDLPKGEEAAYRRLREARSEARYKGIREKRAKAKA 218
>GENEDB_PFALCIPARUM|PF08_0075 [details] [associations]
symbol:PF08_0075 "60S ribosomal protein L13,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR001380 InterPro:IPR018256 Pfam:PF01294 PROSITE:PS01104
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 EMBL:AL844507
HOGENOM:HOG000170452 KO:K02873 PANTHER:PTHR11722
ProtClustDB:PTZ00352 RefSeq:XP_001349385.1
ProteinModelPortal:Q8IAX6 IntAct:Q8IAX6 MINT:MINT-1660232
PRIDE:Q8IAX6 EnsemblProtists:PF08_0075:mRNA GeneID:2655274
KEGG:pfa:PF08_0075 EuPathDB:PlasmoDB:PF3D7_0814000 OMA:SIAANIQ
Uniprot:Q8IAX6
Length = 215
Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/101 (30%), Positives = 56/101 (55%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKG----EATPEERKVAT-QLKGPLMPI---- 52
ESL N++RL +YK+ L++ P + K K +KG A ++ + + K PL+ I
Sbjct: 106 ESLTKNVERLLKYKNSLVMIPLK-KNKAKKGIGGIPADADKNTIKEFRNKKPLLSIFKKE 164
Query: 53 RQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKK 93
+ +KP + S+ +K+F A++TLR A+ + R++K
Sbjct: 165 KNTKPFYETIEVSKIDKEFLAYKTLRRAKLAERRKNRRQQK 205
>UNIPROTKB|Q8IAX6 [details] [associations]
symbol:PF08_0075 "60S ribosomal protein L13" species:36329
"Plasmodium falciparum 3D7" [GO:0022625 "cytosolic large ribosomal
subunit" evidence=ISS] InterPro:IPR001380 InterPro:IPR018256
Pfam:PF01294 PROSITE:PS01104 GO:GO:0006412 GO:GO:0003735
GO:GO:0022625 EMBL:AL844507 HOGENOM:HOG000170452 KO:K02873
PANTHER:PTHR11722 ProtClustDB:PTZ00352 RefSeq:XP_001349385.1
ProteinModelPortal:Q8IAX6 IntAct:Q8IAX6 MINT:MINT-1660232
PRIDE:Q8IAX6 EnsemblProtists:PF08_0075:mRNA GeneID:2655274
KEGG:pfa:PF08_0075 EuPathDB:PlasmoDB:PF3D7_0814000 OMA:SIAANIQ
Uniprot:Q8IAX6
Length = 215
Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/101 (30%), Positives = 56/101 (55%)
Query: 2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKG----EATPEERKVAT-QLKGPLMPI---- 52
ESL N++RL +YK+ L++ P + K K +KG A ++ + + K PL+ I
Sbjct: 106 ESLTKNVERLLKYKNSLVMIPLK-KNKAKKGIGGIPADADKNTIKEFRNKKPLLSIFKKE 164
Query: 53 RQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKK 93
+ +KP + S+ +K+F A++TLR A+ + R++K
Sbjct: 165 KNTKPFYETIEVSKIDKEFLAYKTLRRAKLAERRKNRRQQK 205
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.128 0.333 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 100 100 0.00091 102 3 10 23 0.41 30
29 0.47 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 474 (50 KB)
Total size of DFA: 102 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 18.43u 0.08s 18.51t Elapsed: 00:00:09
Total cpu time: 18.43u 0.08s 18.51t Elapsed: 00:00:10
Start: Thu Aug 15 13:24:38 2013 End: Thu Aug 15 13:24:48 2013