BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2846
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
PKV F TRI+HPN++ +G +S
Sbjct: 67 PKVAFTTRIYHPNINSNGSIS 87
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 8 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
PKV F TRI+HPN++ +G +S
Sbjct: 68 PKVAFTTRIYHPNINSNGSIS 88
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 4 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
PKV F TRI+HPN++ +G +S
Sbjct: 64 PKVAFTTRIYHPNINSNGSIS 84
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 15 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 75 PKVAFTTRIYHPNINSNGSI 94
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 67 PKVAFTTRIYHPNINSNGSI 86
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 65 PKVAFTTRIYHPNINSNGSI 84
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 10 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 70 PKVAFTTRIYHPNINSNGSI 89
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 67 PKVAFTTRIYHPNINSNGSI 86
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE +D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
PKV F TRI+HPN++ +G +S
Sbjct: 65 PKVAFTTRIYHPNINSNGSIS 85
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 67 PKVAFTTRIYHPNINSNGSI 86
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 83 PKVAFTTRIYHPNINSNGSI 102
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 83 PKVAFTTRIYHPNINSNGSI 102
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 67 PKVAFTTRIYHPNINSNGSI 86
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP +A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 5 RIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
PKV F TRI+HP ++ +G +S
Sbjct: 65 PKVAFTTRIYHPAINSNGSIS 85
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY GGVF+L I P YP P
Sbjct: 25 RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F T+I+HPN++ G +
Sbjct: 85 PKVNFTTKIYHPNINSQGAI 104
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 8 RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 68 PKVAFTTRIYHPNINSNGSI 87
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE D++ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 10 RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F T+I+HPN++ +G +
Sbjct: 70 PKVAFTTKIYHPNINSNGSI 89
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPF 267
N+ R+ KE +D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P
Sbjct: 9 NSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 68
Query: 268 SYPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPKV F TRI+HPN++ +G +
Sbjct: 69 DYPFKPPKVAFTTRIYHPNINSNGSI 94
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE +D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 4 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 64 PKVAFTTRIYHPNINSNGSI 83
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE +D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 7 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 67 PKVAFTTRIYHPNINSNGSI 86
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW AT GP SPY+GGVF+L I P YP P
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 67 PKVAFTTRIYHPNINSNGSI 86
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE +D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 13 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 73 PKVAFTTRIYHPNINSNGSI 92
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE +D++ DPP A P+ + HW A+I GP SPY GGVF+L I P YP P
Sbjct: 6 RIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKP 65
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PK+ F T+I+HPN++ +G++
Sbjct: 66 PKISFTTKIYHPNINANGNI 85
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ +E D+ DPP A P+ + HW ATI GP SPY GGVF+L I P YP P
Sbjct: 5 RINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 65 PKVNFTTRIYHPNINSNGSI 84
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE +D++ DPP +A P+ + HW ATI GP S Y+GGVF+L + P YP P
Sbjct: 11 RIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 70
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PK+ F T+I+HPN++ +G +
Sbjct: 71 PKIAFTTKIYHPNINSNGSI 90
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE +D++ DPP A P+ + HW ATI GP S Y+GGVF+L + P YP P
Sbjct: 11 RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 70
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PK+ F T+I+HPN++ +G +
Sbjct: 71 PKIAFTTKIYHPNINSNGSI 90
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE +D++ DPP A P+ + HW ATI GP S Y+GGVF+L + P YP P
Sbjct: 7 RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PK+ F T+I+HPN++ +G +
Sbjct: 67 PKIAFTTKIYHPNINSNGSI 86
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE +D++ DPP A P+ + HW ATI GP S Y+GGVF+L + P YP P
Sbjct: 23 RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 82
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PK+ F T+I+HPN++ +G +
Sbjct: 83 PKIAFTTKIYHPNINSNGSI 102
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE +I+ DPP A P+ + HW ATI GP SPY+GG+F+L + P YP
Sbjct: 8 RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 274 PKVKFITRIFHPNVSRHG 291
P+V F+T+++HPN++++G
Sbjct: 68 PRVTFMTKVYHPNINKNG 85
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + DP GI A+P D+ ++ TI GP SPYE G+F L + +P YPM
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
PKV+F+T+I+HPN+ R G +S
Sbjct: 67 PKVRFLTKIYHPNIDRLGRIS 87
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 46/78 (58%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE DI LDPP A P + W +TI GP S YEGGVF+L I YP P
Sbjct: 52 RIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKP 111
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV F TRI+H N++ G
Sbjct: 112 PKVTFRTRIYHCNINSQG 129
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ++ +PP GI A P+ H+ I GP +PYEGG + L + +P YPM P
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPN+ + G
Sbjct: 65 PKVRFLTKIYHPNIDKLG 82
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ++ +PP GI A P+ H+ I GP +PYEGG + L + +P YPM P
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPN+ + G
Sbjct: 65 PKVRFLTKIYHPNIDKLG 82
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + DP GI A+P D+ ++ TI GP SPYE G+F L + +P YPM
Sbjct: 9 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 68
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPN+ R G
Sbjct: 69 PKVRFLTKIYHPNIDRLG 86
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + DP GI A+P D+ ++ TI GP SPYE G+F L + +P YPM
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPN+ R G
Sbjct: 67 PKVRFLTKIYHPNIDRLG 84
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL+KE DI+ + I A D+ W+ I GP +PYEGG F L I IP YP +
Sbjct: 26 LRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 273 PPKVKFITRIFHPNVSRH 290
PPK+KF+T+I+HPN+S
Sbjct: 86 PPKIKFVTKIWHPNISSQ 103
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + DP GI A+P D+ ++ TI GP SPYE G+F L + +P YPM
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
PKV+F+T+I+HP + R G +S
Sbjct: 67 PKVRFLTKIYHPAIDRLGRIS 87
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 46/78 (58%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE +I LDPP A P + W +TI GP S YEGGVF+L I YP P
Sbjct: 7 RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV F TRI+H N++ G
Sbjct: 67 PKVTFRTRIYHCNINSQG 84
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ ++ DPP GI P DN W A I GP +P++GG F L ++ YP P
Sbjct: 8 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P V+F++R+FHPN+ G +
Sbjct: 68 PTVRFVSRMFHPNIYADGSI 87
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ ++ DPP G+ P +N W A I GP +P+E G F L I YP P
Sbjct: 8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P V+F++++FHPNV G +
Sbjct: 68 PTVRFLSKMFHPNVYADGSI 87
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + +P GI+A+P ++ ++ IAGP SP+EGG F L + +P YPM
Sbjct: 9 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 68
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPNV + G
Sbjct: 69 PKVRFMTKIYHPNVDKLG 86
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + +P GI+A+P ++ ++ IAGP SP+EGG F L + +P YPM
Sbjct: 7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 66
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPNV + G
Sbjct: 67 PKVRFMTKIYHPNVDKLG 84
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + +P GI+A+P ++ ++ IAGP SP+EGG F L + +P YPM
Sbjct: 5 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 64
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPNV + G
Sbjct: 65 PKVRFMTKIYHPNVDKLG 82
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + +P GI+A+P ++ ++ IAGP SP+EGG F L + +P YPM
Sbjct: 10 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 69
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPNV + G
Sbjct: 70 PKVRFMTKIYHPNVDKLG 87
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ ++ DPP G+ P ++ W A I GP +P+E G F L + YP P
Sbjct: 8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P VKFI+++FHPNV G +
Sbjct: 68 PTVKFISKMFHPNVYADGSI 87
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ +K D P G+ A PL + W A I GP +PYE G F L + YP P
Sbjct: 8 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P VKF++ +FHPNV +G++
Sbjct: 68 PHVKFLSEMFHPNVYANGEI 87
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + +P GI+A+P ++ ++ IAGP SP+EGG F L + +P YPM
Sbjct: 12 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 71
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPNV + G
Sbjct: 72 PKVRFMTKIYHPNVDKLG 89
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL EY + L+PP+GI A P++ + W A I GP + +E GVF + P YP+
Sbjct: 7 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 66
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK++F +FHPN+ G + HAP + + + AE W + IL S
Sbjct: 67 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 121
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ ++ DPP G+ P ++ W A I GP +P+E G F L + YP P
Sbjct: 11 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P VKFI+++FHPNV G +
Sbjct: 71 PTVKFISKMFHPNVYADGSI 90
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL EY + L+PP+GI A P++ + W A I GP + +E GVF + P YP+
Sbjct: 13 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 72
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK++F +FHPN+ G + HAP + + + AE W + IL S
Sbjct: 73 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 127
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL EY + L+PP+GI A P++ + W A I GP + +E GVF + P YP+
Sbjct: 10 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 69
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK++F +FHPN+ G + HAP + + + AE W + IL S
Sbjct: 70 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 124
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL EY + L+PP+GI A P++ + W A I GP + +E GVF + P YP+
Sbjct: 11 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 70
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK++F +FHPN+ G + HAP + + + AE W + IL S
Sbjct: 71 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 125
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 217 KEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKV 276
KE + DPPDGI+ P + TI GP +PY GG+F + + + +P PPK
Sbjct: 20 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 79
Query: 277 KFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSI 324
F+T+IFHPNV A GEI + + + G RH L +I
Sbjct: 80 YFLTKIFHPNVG---------ANGEICVNVLKRDWTAELGIRHVLLTI 118
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
LR++ ++ +P +G A +D N W I GP + YEGGVF ++ P YP+ P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 274 PKVKFITRIFHPNVSRHGDLS----HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PK+KFIT I+HPNV ++GD+ H P + + + + E W H + +I+ S
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGY----EKPEERWLPIHTVETIMIS 135
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 194 QHMIRPDTSSLQEDNTWRHF------------RLRKEYNDI---KLDPPDGIQAQPLDNK 238
QHM PD + +D R+++E+ ++ + + I+ +D
Sbjct: 29 QHMDSPDLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 88
Query: 239 RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288
IAGP +PYEGG + L I+IP +YP +PPKV+FIT+I+HPN+S
Sbjct: 89 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 138
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 229 GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288
G+ AQ + W IAGP+ +PYEGG F L I IP YP +PPK+KF+T+I+HPN+S
Sbjct: 64 GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 191 TCLQHMIRPDTSSLQEDNTWRHFR--LRKE---YNDIKLDPPDGIQAQPLDNKRCHWMAT 245
T Q M R +++ R F+ L+ E N IK+D +D
Sbjct: 8 TGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDL--------VDENFTELRGE 59
Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288
IAGP +PYEGG + L I+IP +YP +PPKV+FIT+I+HPN+S
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 102
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 214 RLRKEYNDI---KLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R+++E+ ++ + + I+ +D IAGP +PYEGG + L I+IP +YP
Sbjct: 10 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 69
Query: 271 MHPPKVKFITRIFHPNVS 288
+PPKV+FIT+I+HPN+S
Sbjct: 70 FNPPKVRFITKIWHPNIS 87
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 214 RLRKEYNDI---KLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R+++E+ ++ + + I+ +D IAGP +PYEGG + L I+IP +YP
Sbjct: 9 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 68
Query: 271 MHPPKVKFITRIFHPNVS 288
+PPKV+FIT+I+HPN+S
Sbjct: 69 FNPPKVRFITKIWHPNIS 86
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWM-ATIAGPVASPYEGGVFYLYIRIPFSY 269
R R+ KE +K DP I + + H + T GP +PYEGG F + I +P Y
Sbjct: 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62
Query: 270 PMHPPKVKFITRIFHPNVS 288
P PPK++F T+++HPN+S
Sbjct: 63 PFKPPKMQFDTKVYHPNIS 81
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 214 RLRKEYNDI---KLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R+++E+ ++ + + I+ +D IAGP +PYEGG + L I+IP +YP
Sbjct: 12 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71
Query: 271 MHPPKVKFITRIFHPNVS 288
+PPKV+FIT+I+HPN+S
Sbjct: 72 FNPPKVRFITKIWHPNIS 89
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLDNKRCH-WMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
L+K+ D++ P DG A +D+ + W + GP + YEGG F + P YP P
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 274 PKVKFITRIFHPNVSRHGDLS----HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PK+KFI+ I+HPN+ + G++ H P + + E W H + +IL S
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYER----PEERWLPVHTVETILLS 121
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWM-ATIAGPVASPYEGGVFYLYIRIPFSY 269
R R+ KE +K DP I + + H + T GP +PYEGG F + I +P Y
Sbjct: 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 270 PMHPPKVKFITRIFHPNVS 288
P PPK++F T+++HPN+S
Sbjct: 62 PFKPPKMQFDTKVYHPNIS 80
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R RL++E + + +PP GI ++ A I G +PYE GVF L + IP YP
Sbjct: 5 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 64
Query: 271 MHPPKVKFITRIFHPNVSRHG----DLSHAPAQG 300
PP+++F+T I+HPN+ G D+ P +G
Sbjct: 65 FEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKG 98
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL KE + D P GI A P +N W I GP +PY GVF + P YP+
Sbjct: 8 RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 67
Query: 273 PPKVKFITRIFHPNVSRHGDLS----HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK+ F I HPN+ +G++ H+P N+ E W + IL S
Sbjct: 68 PPKLTFTPSILHPNIYPNGEVCISILHSPGD----DPNMYELAEERWSPVQSVEKILLS 122
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL++E + + GI A P + W+AT+ GP + YE + L + P YP P
Sbjct: 13 RLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP 72
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P VKF T +HPNV + G++
Sbjct: 73 PVVKFTTPCWHPNVDQSGNI 92
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 229 GIQAQPLDNKRC---------HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI 279
G+Q +P++ R +W I GP + YEGG F ++ P YP PP +F+
Sbjct: 15 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFL 74
Query: 280 TRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
T+++HPN+ GD+ + + +E W + +IL S
Sbjct: 75 TKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 122
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 229 GIQAQPLDNKRC---------HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI 279
G+Q +P++ R +W I GP + YEGG F ++ P YP PP +F+
Sbjct: 18 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFL 77
Query: 280 TRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
T+++HPN+ GD+ + + +E W + +IL S
Sbjct: 78 TKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 125
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL++E + + GI A P + W+ TI G + YE + L + P YP +
Sbjct: 34 RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA 93
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
P VKF+T +HPNV G++S
Sbjct: 94 PTVKFLTPCYHPNVDTQGNIS 114
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%)
Query: 212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
+ L +++ D+K + GI A+P+ W I G S ++G VF L I Y
Sbjct: 25 YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 84
Query: 272 HPPKVKFITRIFHPNVSRH 290
PP VKFIT FHPNV H
Sbjct: 85 APPVVKFITIPFHPNVDPH 103
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV+ G +
Sbjct: 71 YPSSPPKCKFEPPLFHPNVAPSGTV 95
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDLS 294
YP PPK KF +FHPNV G +S
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVS 93
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL++E + D P G A+P+ W A I G + + GGV+ + + P
Sbjct: 8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPKVKF +HPNV G +
Sbjct: 68 YPSKPPKVKFPAGFYHPNVYPSGTI 92
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL++E + D P G A+P+ W A I G + + GGV+ + + P
Sbjct: 10 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 69
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPKVKF +HPNV G +
Sbjct: 70 YPSKPPKVKFPAGFYHPNVYPSGTI 94
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL+++Y IK DP I A+PL + W + GP +PYEGG ++ + P +P P
Sbjct: 18 RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP 77
Query: 274 PKVKFIT 280
P + IT
Sbjct: 78 PSIYMIT 84
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
R+ KE D++ PP ++ D+ + P PY F L I P YP
Sbjct: 4 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 63
Query: 273 PPKVKFITRIFHPNVSRHGDL 293
PP +KF T+I+HPNV +G +
Sbjct: 64 PPMIKFTTKIYHPNVDENGQI 84
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
R+ KE D++ PP ++ D+ + P PY F L I P YP
Sbjct: 7 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 66
Query: 273 PPKVKFITRIFHPNVSRHGDL 293
PP +KF T+I+HPNV +G +
Sbjct: 67 PPMIKFTTKIYHPNVDENGQI 87
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTV 94
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTV 92
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKR-----CHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL++E + D P G A+P + +W I G + +EGG++ L + P
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK +F +FHPNV G +
Sbjct: 74 YPTRPPKCRFTPPLFHPNVYPSGTV 98
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 9 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 68
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 69 YPSSPPKCKFEPPLFHPNVYPSGTV 93
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTV 95
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTV 95
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTV 94
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGTV 95
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPP 274
L KE +++ + P + D + H P Y+GG F +P +Y M PP
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPP 78
Query: 275 KVKFITRIFHPNVSRHGDL 293
KVK +T+I+HPN++ G++
Sbjct: 79 KVKCLTKIWHPNITETGEI 97
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 13 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 72
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 73 YPSSPPKCKFEPPLFHPNVYPSGTV 97
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHPNV G +
Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTV 92
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPP 274
L KE +++ + P + D + H P Y+GG F +P +Y M PP
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPP 78
Query: 275 KVKFITRIFHPNVSRHGDL 293
KVK +T+I+HPN++ G++
Sbjct: 79 KVKCLTKIWHPNITETGEI 97
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI-TRIFHPNVSRHGDLSHAPAQG 300
W A I+GP +PYE F + I +P SYPM+PPK+ F+ I H NV A G
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKS--------ATG 101
Query: 301 EIYHSNIS-SECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLD 345
EI + + E W H ++++ + R P PLD
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVW-------RLLREPVCDSPLD 140
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI-TRIFHPNVSRHGDLSHAPAQG 300
W A I+GP +PYE F + I +P SYPM+PPK+ F+ I H NV A G
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKS--------ATG 101
Query: 301 EIYHSNIS-SECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLD 345
EI + + E W H ++++ + R P PLD
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVW-------RLLREPVCDSPLD 140
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
W I P PY+ G F + I P YP PPK+ F T+I+HPN+ G +
Sbjct: 35 WQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 85
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
W I P PY+ G F + I P YP PPK+ F T+I+HPN+ G +
Sbjct: 37 WQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 87
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI-TRIFHPNVSRHGDLSHAPAQG 300
W A I+GP +PYE F + I +P SYPM+PPK+ F+ I H NV A G
Sbjct: 50 WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKS--------ATG 101
Query: 301 EI 302
EI
Sbjct: 102 EI 103
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK KF +FHP V G +
Sbjct: 71 YPSSPPKCKFEPPLFHPQVYPSGTV 95
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 241 HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287
++ GP +PYEGGV+ + + +P YP P + F+ +IFHPN+
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNI 98
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 248 GPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287
GP +PYE G + L++++P YP P + F RI HPNV
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV 85
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 248 GPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR 289
GP + YEGG++ +++ +P YP P + F+ ++ HPNV
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L++ W I GP + YE ++ L +
Sbjct: 11 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 70
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
YP PP V+F+T+I ++ + A
Sbjct: 71 PKYPEAPPSVRFVTKINMNGINNSSGMVDA 100
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L++ W I GP + YE ++ L +
Sbjct: 5 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 64
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
YP PP V+F+T+I ++ + A
Sbjct: 65 PKYPEAPPSVRFVTKINMNGINNSSGMVDA 94
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L++ W I GP + YE ++ L +
Sbjct: 6 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 65
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
YP PP V+F+T+I ++ + A
Sbjct: 66 PKYPEAPPSVRFVTKINMNGINNSSGMVDA 95
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L++ W I GP + YE ++ L +
Sbjct: 16 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 75
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
YP PP V+F+T+I ++ + A
Sbjct: 76 PKYPEAPPSVRFVTKINMNGINNSSGMVDA 105
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 214 RLRKEYNDIKLDPPDG--IQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
RL+KE ++ DPP G + + + N W+ + G + YEG F L + YP
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 85
Query: 272 HPPKVKFITRIF--HPNVSRHGDL 293
P+V F HP+V +G +
Sbjct: 86 DSPQVMFTGENIPVHPHVYSNGHI 109
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L++ W I GP + YE ++ L I
Sbjct: 8 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECG 67
Query: 267 FSYPMHPPKVKFITRI 282
YP PP V+F+T+I
Sbjct: 68 PKYPEAPPFVRFVTKI 83
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L++ W I GP + YE ++ L I
Sbjct: 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 95
Query: 267 FSYPMHPPKVKFITRI 282
YP PP V+F+T+I
Sbjct: 96 PKYPEAPPFVRFVTKI 111
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L++ W I GP + YE ++ L I
Sbjct: 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 85
Query: 267 FSYPMHPPKVKFITRI 282
YP PP V+F+T+I
Sbjct: 86 PKYPEAPPFVRFVTKI 101
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 200 DTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQA----QPLDNKRCHWMATIAGPVASPYE 255
++SS+Q + + RL+++ + + L P + D + + I P Y
Sbjct: 19 NSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYN 78
Query: 256 GGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
G + YP+ PPKV + +IFHPN+ G++
Sbjct: 79 YGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNV 116
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 193 LQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVAS 252
L+ + + + + R++K+ N++ L P D + P
Sbjct: 9 LKQQKKEEEKGSSKKASAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVICPDEG 66
Query: 253 PYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLS 294
Y+ G F ++ YP PPKVK T ++HPN+ G+++
Sbjct: 67 FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVA 108
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
R++K+ N++ L P D + P Y+ G F ++ YP
Sbjct: 8 QLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPH 65
Query: 272 HPPKVKFITRIFHPNVSRHGDL 293
PPKVK T ++HPN+ G++
Sbjct: 66 DPPKVKCETXVYHPNIDLEGNV 87
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGE 301
W TI GP S +E ++ L I +YP PPKV FI++I P V+ P GE
Sbjct: 41 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN--------PTTGE 92
Query: 302 I---YHSNISSECAETWGRRHRLYSILF 326
+ +H+ W R + + ++L
Sbjct: 93 VQTDFHT------LRDWKRAYTMETLLL 114
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGE 301
W TI GP S +E ++ L I +YP PPKV FI++I P V+ P GE
Sbjct: 42 WNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN--------PTTGE 93
Query: 302 I---YHSNISSECAETWGRRHRLYSILF 326
+ +H+ W R + + ++L
Sbjct: 94 VQTDFHT------LRDWKRAYTMETLLL 115
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 211 RHFRL-----RKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRI 265
R FRL R + ++ G+++ D +W TI G + +E ++ L I
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFC 80
Query: 266 PFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
+YP PP VKF T+I ++S G + +N+ + W R + + +IL
Sbjct: 81 DDNYPDSPPTVKFDTKI---------EMSCVDNCGRVIKNNL--HILKNWNRNYTIETIL 129
Query: 326 FSNSIRDHIQRRPRVRFP 343
S+R + R P
Sbjct: 130 I--SLRQEMLSSANKRLP 145
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 211 RHFRL-----RKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRI 265
R FRL R + ++ G+++ D +W TI G + +E ++ L I
Sbjct: 26 RSFRLLDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFC 84
Query: 266 PFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
+YP PP VKF T+I ++S G + +N+ + W R + + +IL
Sbjct: 85 DDNYPDSPPTVKFDTKI---------EMSCVDNCGRVIKNNL--HILKNWNRNYTIETIL 133
Query: 326 FSNSIRDHIQRRPRVRFP 343
S+R + R P
Sbjct: 134 I--SLRQEMLSSANKRLP 149
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 106 QNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFP 165
+N G S SLP E+L+ +FS L L VS C RW+ + +D F +
Sbjct: 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMD 61
Query: 166 LFNSNITVSNWYSVYAK 182
L NS I VS + + ++
Sbjct: 62 LSNSVIEVSTLHGILSQ 78
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 241 HWMATIAGPVASPYEGGVFYLYIRIPFS--YPMHPPKVKFITRIFHPNVSRHGDL 293
+W+ + P S Y G + + FS YP PP V+F+T ++ P V+ G +
Sbjct: 51 NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGI 105
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 34.7 bits (78), Expect = 0.084, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
++R++KE ++ +PP N W+ G + Y V+ L I P YP+
Sbjct: 8 NYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPL 67
Query: 272 HPPKVKFITR-IFHPNVSRHGDL 293
PP V F+ + H +V +GD+
Sbjct: 68 KPPIVYFLQKPPKHTHVYSNGDI 90
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 53
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 106 QNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
+N G S SLP E+L+ +FS L L VS C RW+ + +D
Sbjct: 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 212 HFRLRKEYNDIKLDPPDG--IQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSY 269
++R++KE N+ +PP I P N R W+ G + Y V+ + I P +Y
Sbjct: 22 NYRIQKELNNFLKNPPINCTIDVHP-SNIRI-WIVQYVGLENTIYANEVYKIKIIFPDNY 79
Query: 270 PMHPPKVKFITR-IFHPNVSRHGDL 293
P+ PP V F+ + H +V +GD+
Sbjct: 80 PLKPPIVYFLQKPPKHTHVYSNGDI 104
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 106 QNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
+N G S SLP E+L+ +FS L L VS C RW+ + +D
Sbjct: 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-----FHPNVSRHGDL 293
I GP +PY G F + P YP PP V T F+PN+ G +
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 31.6 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 115 SLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
SLP E+L+ +FS L L VS C RW+ + +D
Sbjct: 3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37
>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 312
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 109 GGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFN 168
S++ LP +V + + S+L LC + W + D I WRYF+L P ++
Sbjct: 1 AASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI---LWRYFLLRDLPSWS 57
Query: 169 S 169
S
Sbjct: 58 S 58
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 234 PLDNKRCHWMATIAGPVASPYEGGVFY--------LYIRIPFSYPMHPPKVKFITRIFHP 285
+ ++R +AGP P+EG + LY+ SY ++K + ++
Sbjct: 292 AMKDERVKASKVLAGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNW 351
Query: 286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQR 336
N+ R+GD++ G I + + E + R L ++L + +D ++R
Sbjct: 352 NL-RYGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYFKDIVER 401
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 234 PLDNKRCHWMATIAGPVASPYEGGVFY--------LYIRIPFSYPMHPPKVKFITRIFHP 285
+ ++R +AGP P+EG + LY+ SY ++K + ++
Sbjct: 293 AMKDERVKASKVLAGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNW 352
Query: 286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQR 336
N+ R+GD++ G I + + E + R L ++L + +D ++R
Sbjct: 353 NL-RYGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYFKDIVER 402
>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 803
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 212 HFRLRKEYNDIKLDPPDG---IQAQPLDNKRCHWMATIAGPVAS 252
H R++K + D L P + A+ L + HWM T+AG VA+
Sbjct: 58 HGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAA 101
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 124 VFSYLDDLSLCSVSRACTRWFTIIAD 149
+ SYLD SLC+ C W+ + +D
Sbjct: 26 ILSYLDAKSLCAAELVCKEWYRVTSD 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,487,211
Number of Sequences: 62578
Number of extensions: 521412
Number of successful extensions: 1191
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 146
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)