Query psy2846
Match_columns 392
No_of_seqs 334 out of 1979
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:23:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2.3E-41 4.9E-46 302.8 15.4 141 209-380 4-145 (153)
2 KOG0417|consensus 100.0 1.2E-41 2.7E-46 299.8 13.1 139 211-380 2-140 (148)
3 KOG0419|consensus 100.0 1.2E-38 2.6E-43 274.7 12.7 142 207-379 1-142 (152)
4 KOG0425|consensus 100.0 9.1E-38 2E-42 276.2 14.7 152 210-379 5-157 (171)
5 PTZ00390 ubiquitin-conjugating 100.0 9.2E-38 2E-42 280.0 14.7 139 211-380 3-141 (152)
6 PLN00172 ubiquitin conjugating 100.0 3.6E-37 7.7E-42 274.7 14.9 139 211-380 2-140 (147)
7 KOG0426|consensus 100.0 3E-37 6.4E-42 266.2 13.5 154 208-379 2-156 (165)
8 PF00179 UQ_con: Ubiquitin-con 100.0 2.4E-34 5.1E-39 252.6 13.2 137 214-380 1-138 (140)
9 KOG0421|consensus 100.0 9.8E-34 2.1E-38 247.5 11.1 140 206-377 25-164 (175)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 7.6E-33 1.7E-37 243.5 14.4 138 213-380 2-139 (141)
11 KOG0418|consensus 100.0 2.9E-33 6.3E-38 254.1 11.4 139 211-380 4-146 (200)
12 KOG0424|consensus 100.0 2E-32 4.2E-37 239.3 14.2 144 208-380 2-150 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.4E-31 3.1E-36 236.5 14.4 138 213-380 1-139 (145)
14 KOG0427|consensus 100.0 1.3E-28 2.8E-33 212.5 11.3 148 197-360 2-155 (161)
15 KOG0422|consensus 100.0 1.5E-28 3.3E-33 214.0 11.5 138 210-378 2-140 (153)
16 KOG0420|consensus 99.9 6.5E-27 1.4E-31 210.1 10.7 141 206-380 24-168 (184)
17 KOG0423|consensus 99.9 8.6E-27 1.9E-31 209.4 6.0 145 205-380 5-149 (223)
18 KOG0416|consensus 99.9 7.3E-26 1.6E-30 203.0 10.3 137 211-380 4-141 (189)
19 KOG0894|consensus 99.9 1.8E-24 3.8E-29 200.5 13.2 150 207-372 2-165 (244)
20 KOG0428|consensus 99.8 5E-20 1.1E-24 173.8 9.3 137 207-362 8-151 (314)
21 KOG0895|consensus 99.7 3.9E-18 8.4E-23 186.2 9.6 126 210-343 851-979 (1101)
22 KOG0895|consensus 99.6 1.8E-15 3.9E-20 165.6 11.5 128 202-337 274-405 (1101)
23 KOG0429|consensus 99.6 2.2E-14 4.8E-19 134.0 11.3 136 211-378 20-161 (258)
24 PF12937 F-box-like: F-box-lik 99.4 1.1E-13 2.3E-18 100.1 3.6 47 113-162 1-47 (47)
25 KOG0896|consensus 99.4 1.2E-12 2.7E-17 114.1 6.5 126 208-346 3-133 (138)
26 smart00256 FBOX A Receptor for 98.9 1.8E-09 3.8E-14 74.5 4.6 40 116-158 1-40 (41)
27 PF00646 F-box: F-box domain; 98.9 6.1E-10 1.3E-14 80.1 2.3 47 112-161 2-48 (48)
28 KOG2997|consensus 98.5 7.6E-08 1.7E-12 95.4 4.2 68 112-182 106-186 (366)
29 KOG0281|consensus 98.4 2.3E-07 5.1E-12 92.9 4.2 51 110-163 72-126 (499)
30 KOG2120|consensus 98.3 5.6E-07 1.2E-11 89.4 4.7 47 112-161 97-143 (419)
31 KOG3926|consensus 97.8 4.9E-05 1.1E-09 74.3 6.3 85 103-190 192-284 (332)
32 KOG0274|consensus 97.7 2.6E-05 5.7E-10 83.2 3.5 56 108-166 103-158 (537)
33 KOG4341|consensus 97.7 2.3E-05 5E-10 80.7 2.9 50 112-164 71-120 (483)
34 PF14461 Prok-E2_B: Prokaryoti 97.6 8.9E-05 1.9E-09 65.2 5.8 69 255-335 34-105 (133)
35 KOG0897|consensus 97.5 8.3E-05 1.8E-09 63.9 3.8 74 259-346 13-88 (122)
36 PF05743 UEV: UEV domain; Int 97.1 0.00036 7.7E-09 60.8 3.1 77 239-335 32-116 (121)
37 PF06881 Elongin_A: RNA polyme 96.8 0.0026 5.6E-08 54.2 5.7 96 112-229 3-101 (109)
38 PF08694 UFC1: Ubiquitin-fold 95.5 0.011 2.4E-07 52.9 3.0 87 206-297 20-116 (161)
39 KOG2391|consensus 94.4 0.12 2.5E-06 52.4 7.1 108 210-337 20-138 (365)
40 PF05773 RWD: RWD domain; Int 93.4 0.15 3.3E-06 41.9 5.1 68 213-281 4-73 (113)
41 PF14462 Prok-E2_E: Prokaryoti 93.3 0.63 1.4E-05 40.9 8.9 99 229-334 13-119 (122)
42 PF13013 F-box-like_2: F-box-l 92.6 0.17 3.7E-06 43.5 4.3 30 112-141 21-50 (109)
43 smart00591 RWD domain in RING 92.0 0.53 1.1E-05 38.5 6.4 40 241-280 24-64 (107)
44 KOG3357|consensus 91.7 0.28 6E-06 43.6 4.6 85 206-296 23-118 (167)
45 PLN03215 ascorbic acid mannose 90.9 0.21 4.6E-06 51.5 3.5 37 113-149 4-41 (373)
46 KOG4408|consensus 78.1 0.43 9.4E-06 48.5 -1.4 54 112-168 7-60 (386)
47 PF14457 Prok-E2_A: Prokaryoti 77.0 3.8 8.3E-05 37.6 4.5 60 261-334 57-124 (162)
48 PF09372 PRANC: PRANC domain; 74.9 2.8 6.2E-05 34.5 2.9 26 111-136 70-95 (97)
49 KOG0309|consensus 46.7 63 0.0014 36.7 7.4 74 206-281 416-491 (1081)
50 PHA03100 ankyrin repeat protei 44.3 17 0.00037 37.3 2.7 30 112-141 447-476 (480)
51 PF09765 WD-3: WD-repeat regio 37.1 53 0.0011 33.0 4.7 60 210-278 99-158 (291)
52 KOG4018|consensus 34.9 72 0.0016 30.8 5.0 60 215-277 7-69 (215)
53 PHA03095 ankyrin-like protein; 31.8 39 0.00085 34.5 3.0 24 114-137 443-466 (471)
54 PHA02875 ankyrin repeat protei 31.0 27 0.00058 35.4 1.5 26 111-136 385-410 (413)
55 PF14460 Prok-E2_D: Prokaryoti 27.2 28 0.00061 32.0 0.9 22 278-299 88-112 (175)
56 PHA02989 ankyrin repeat protei 25.9 57 0.0012 34.2 3.0 28 111-138 457-484 (494)
57 cd03571 ENTH_epsin ENTH domain 24.0 1.2E+02 0.0026 26.5 4.2 22 154-185 41-62 (123)
58 PHA02878 ankyrin repeat protei 23.9 56 0.0012 34.0 2.4 26 111-136 445-470 (477)
59 PF06113 BRE: Brain and reprod 21.6 3.3E+02 0.0072 28.1 7.3 43 238-286 52-95 (333)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=302.81 Aligned_cols=141 Identities=39% Similarity=0.688 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
..+.+||++|+++|++++++++++.+.++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 34999999999999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
|.+|+|||+||+ ++|+|+++|++||+| |+++|. .||.++|+|.+| |++|
T Consensus 84 ~~~G~vCLdIL~-------------~~WsP~~~l~sILls--l~slL~-~PN~~~Pln~da---------------a~~~ 132 (153)
T COG5078 84 DPSGNVCLDILK-------------DRWSPVYTLETILLS--LQSLLL-SPNPDSPLNTEA---------------ATLY 132 (153)
T ss_pred CCCCCChhHHHh-------------CCCCccccHHHHHHH--HHHHHc-CCCCCCCCChHH---------------HHHH
Confidence 999999999998 899999999999998 999996 699999999877 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 133 ~~d~~~y~~~vr~ 145 (153)
T COG5078 133 REDKEEYEKKVRE 145 (153)
T ss_pred HhCHHHHHHHHHH
Confidence 9999999998874
No 2
>KOG0417|consensus
Probab=100.00 E-value=1.2e-41 Score=299.76 Aligned_cols=139 Identities=38% Similarity=0.697 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH 290 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~ 290 (392)
+.+||.||+++|++++++|+++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846 291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD 370 (392)
Q Consensus 291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d 370 (392)
|+||+|||+ ++|+|+.+|.+||+| |+++| ++|+.++|+.+++ |++|+.|
T Consensus 82 G~IclDILk-------------~~WsPAl~i~~Vlls--I~sLL-~~PnpddPL~~~i---------------a~~~k~d 130 (148)
T KOG0417|consen 82 GRICLDILK-------------DQWSPALTISKVLLS--ICSLL-SDPNPDDPLVPDI---------------AELYKTD 130 (148)
T ss_pred ccchHHhhh-------------ccCChhhHHHHHHHH--HHHHh-cCCCCCccccHHH---------------HHHHHhh
Confidence 999999998 679999999999998 99988 6999999999877 9999999
Q ss_pred HHHHHHHhcC
Q psy2846 371 QWRYFVLTRF 380 (392)
Q Consensus 371 ~~~y~~~~r~ 380 (392)
+.+|+..+|.
T Consensus 131 ~~~~~~~ARe 140 (148)
T KOG0417|consen 131 RAKYERTARE 140 (148)
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 3
>KOG0419|consensus
Probab=100.00 E-value=1.2e-38 Score=274.66 Aligned_cols=142 Identities=33% Similarity=0.619 Sum_probs=135.6
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN 286 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN 286 (392)
|+..|.+||++++++|+++++.||++.|.++|+++|.++|+||.+|||+||.|++.|.|+++||.+||.|+|++++||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846 287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL 366 (392)
Q Consensus 287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l 366 (392)
||.+|.+|||||+ .+|+|.+++.+||+| ||+|| ++|+.++|+|.+| |++
T Consensus 81 vya~G~iClDiLq-------------NrWsp~Ydva~ILts--iQslL-~dPn~~sPaN~eA---------------A~L 129 (152)
T KOG0419|consen 81 VYADGSICLDILQ-------------NRWSPTYDVASILTS--IQSLL-NDPNPNSPANSEA---------------ARL 129 (152)
T ss_pred cCCCCcchHHHHh-------------cCCCCchhHHHHHHH--HHHHh-cCCCCCCcccHHH---------------HHH
Confidence 9999999999998 699999999999998 99988 5999999999776 999
Q ss_pred HHhCHHHHHHHhc
Q psy2846 367 ISSDQWRYFVLTR 379 (392)
Q Consensus 367 ~~~d~~~y~~~~r 379 (392)
|++|+.+|...++
T Consensus 130 f~e~~rey~rrVk 142 (152)
T KOG0419|consen 130 FSENKREYERRVK 142 (152)
T ss_pred HhhChHHHHHHHH
Confidence 9999999987665
No 4
>KOG0425|consensus
Probab=100.00 E-value=9.1e-38 Score=276.20 Aligned_cols=152 Identities=24% Similarity=0.426 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~ 288 (392)
.+..-|+++|+.|++.+..|+++...++ |+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|+|||||||
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 3677889999999999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
++|+||++||.+...+....+...|+|+|.+|+++||+| |.+|| +.||..+|+|.+| |+.|+
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllS--iIsmL-~~PN~~SPANVDA---------------a~~~R 146 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLS--IISML-NSPNDESPANVDA---------------AKEWR 146 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHH--HHHHH-cCCCCCCccchHH---------------HHHHh
Confidence 999999999999998999999999999999999999999 99988 6999999999988 99999
Q ss_pred hCHHHHHHHhc
Q psy2846 369 SDQWRYFVLTR 379 (392)
Q Consensus 369 ~d~~~y~~~~r 379 (392)
+|+++|+..+|
T Consensus 147 en~~EykkkV~ 157 (171)
T KOG0425|consen 147 ENPEEYKKKVR 157 (171)
T ss_pred hCHHHHHHHHH
Confidence 99999988765
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=9.2e-38 Score=279.99 Aligned_cols=139 Identities=32% Similarity=0.613 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH 290 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~ 290 (392)
+.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846 291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD 370 (392)
Q Consensus 291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d 370 (392)
|.||+++|+ ++|+|++||++||++ |+++|. .|+.++|+|.++ |++|++|
T Consensus 83 G~iCl~iL~-------------~~W~p~~ti~~iL~~--i~~ll~-~P~~~~pln~~a---------------a~~~~~d 131 (152)
T PTZ00390 83 GRICLDILK-------------DKWSPALQIRTVLLS--IQALLS-APEPDDPLDTSV---------------ADHFKNN 131 (152)
T ss_pred CeEECccCc-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCCchHHHH---------------HHHHHHC
Confidence 999999997 689999999999998 999994 999999999766 9999999
Q ss_pred HHHHHHHhcC
Q psy2846 371 QWRYFVLTRF 380 (392)
Q Consensus 371 ~~~y~~~~r~ 380 (392)
+++|+..+|.
T Consensus 132 ~~~f~~~a~~ 141 (152)
T PTZ00390 132 RADAEKVARE 141 (152)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.6e-37 Score=274.68 Aligned_cols=139 Identities=35% Similarity=0.652 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH 290 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~ 290 (392)
+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846 291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD 370 (392)
Q Consensus 291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d 370 (392)
|.||+++|. ++|+|++||++||.+ |+++|. +|+.++|+|.++ |++|++|
T Consensus 82 G~iCl~il~-------------~~W~p~~ti~~il~~--i~~ll~-~P~~~~p~n~~a---------------a~~~~~~ 130 (147)
T PLN00172 82 GSICLDILR-------------DQWSPALTVSKVLLS--ISSLLT-DPNPDDPLVPEI---------------ARVFKEN 130 (147)
T ss_pred CEEEcccCc-------------CCCCCcCcHHHHHHH--HHHHHh-CCCCCCchHHHH---------------HHHHHHC
Confidence 999999997 689999999999998 999884 999999999766 9999999
Q ss_pred HHHHHHHhcC
Q psy2846 371 QWRYFVLTRF 380 (392)
Q Consensus 371 ~~~y~~~~r~ 380 (392)
+++|+..+|.
T Consensus 131 ~~~f~~~a~~ 140 (147)
T PLN00172 131 RSRYEATARE 140 (147)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 7
>KOG0426|consensus
Probab=100.00 E-value=3e-37 Score=266.22 Aligned_cols=154 Identities=26% Similarity=0.487 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN 286 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN 286 (392)
+..|+|||++||++|..++|+||.+.|.+ +|+++|.+.|.||++|+|+||.|-.++.||.+||.+||+++|...+||||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN 81 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN 81 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence 46899999999999999999999999965 68999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846 287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL 366 (392)
Q Consensus 287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l 366 (392)
||++|+||++||+....+.+.++...|+|+|.++++.||+| +.++| +.||.++++|.+| +++
T Consensus 82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS--V~SML-aEPNdESgANvdA---------------~~m 143 (165)
T KOG0426|consen 82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS--VVSML-AEPNDESGANVDA---------------CKM 143 (165)
T ss_pred ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH--HHHHH-cCCCcccCcccHH---------------HHH
Confidence 99999999999999999999999999999999999999998 77877 6999999999988 999
Q ss_pred HHhCHHHHHHHhc
Q psy2846 367 ISSDQWRYFVLTR 379 (392)
Q Consensus 367 ~~~d~~~y~~~~r 379 (392)
|++|+++|+.++|
T Consensus 144 WRe~R~ef~~i~~ 156 (165)
T KOG0426|consen 144 WREDREEFEKIAK 156 (165)
T ss_pred HHHhHHHHHHHHH
Confidence 9999999998876
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.4e-34 Score=252.59 Aligned_cols=137 Identities=37% Similarity=0.726 Sum_probs=124.9
Q ss_pred HHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCCc
Q psy2846 214 RLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292 (392)
Q Consensus 214 RL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G~ 292 (392)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCHH
Q psy2846 293 LSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQW 372 (392)
Q Consensus 293 VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~~ 372 (392)
||+++|+ .+.|+|+++|.+||.+ |+++| .+|+.++|+|.++ |++|++|++
T Consensus 81 icl~~l~------------~~~W~p~~~i~~il~~--i~~ll-~~p~~~~~~n~~a---------------~~~~~~~~~ 130 (140)
T PF00179_consen 81 ICLDILN------------PESWSPSYTIESILLS--IQSLL-SEPNPEDPLNEEA---------------AELYKNDRE 130 (140)
T ss_dssp BGHGGGT------------TTTC-TTSHHHHHHHH--HHHHH-HSTCTTSTSSHHH---------------HHHHHHCHH
T ss_pred chhhhhh------------cccCCcccccccHHHH--HHHHH-hCCCCCCcchHHH---------------HHHHHHCHH
Confidence 9999997 3569999999999998 99988 5899999999776 999999999
Q ss_pred HHHHHhcC
Q psy2846 373 RYFVLTRF 380 (392)
Q Consensus 373 ~y~~~~r~ 380 (392)
+|...+|.
T Consensus 131 ~f~~~~~~ 138 (140)
T PF00179_consen 131 EFEKKARE 138 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 9
>KOG0421|consensus
Probab=100.00 E-value=9.8e-34 Score=247.48 Aligned_cols=140 Identities=33% Similarity=0.552 Sum_probs=133.2
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP 285 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP 285 (392)
.......|||++||..|.....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.|||
T Consensus 25 ~~~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HP 104 (175)
T KOG0421|consen 25 VDGHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHP 104 (175)
T ss_pred ccCchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCC
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846 286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD 365 (392)
Q Consensus 286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~ 365 (392)
||+..|.||||||+ +.|+..+.+++||+| ||++| .+||.++|+|..| |+
T Consensus 105 NVD~~GnIcLDILk-------------dKWSa~YdVrTILLS--iQSLL-GEPNn~SPLNaqA---------------Ae 153 (175)
T KOG0421|consen 105 NVDLSGNICLDILK-------------DKWSAVYDVRTILLS--IQSLL-GEPNNSSPLNAQA---------------AE 153 (175)
T ss_pred CccccccchHHHHH-------------HHHHHHHhHHHHHHH--HHHHh-CCCCCCCcchhHH---------------HH
Confidence 99999999999998 899999999999999 99998 6999999999666 99
Q ss_pred HHHhCHHHHHHH
Q psy2846 366 LISSDQWRYFVL 377 (392)
Q Consensus 366 l~~~d~~~y~~~ 377 (392)
+|. |+++|+..
T Consensus 154 lW~-d~~eykk~ 164 (175)
T KOG0421|consen 154 LWS-DQEEYKKY 164 (175)
T ss_pred Hhc-CHHHHHHH
Confidence 999 99999864
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=7.6e-33 Score=243.51 Aligned_cols=138 Identities=37% Similarity=0.726 Sum_probs=130.6
Q ss_pred HHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCCc
Q psy2846 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292 (392)
Q Consensus 213 kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G~ 292 (392)
+||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCHH
Q psy2846 293 LSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQW 372 (392)
Q Consensus 293 VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~~ 372 (392)
||+++|. .+.|+|+++|++||.+ |+++|. +|+.++|+|.+| |++|++|++
T Consensus 82 icl~~l~------------~~~W~p~~~l~~il~~--i~~~l~-~p~~~~~~n~~a---------------a~~~~~~~~ 131 (141)
T cd00195 82 ICLSILK------------THGWSPAYTLRTVLLS--LQSLLN-EPNPSDPLNAEA---------------AKLYKENRE 131 (141)
T ss_pred CchhhcC------------CCCcCCcCcHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HHHHHHCHH
Confidence 9999997 2359999999999998 999997 999999999766 999999999
Q ss_pred HHHHHhcC
Q psy2846 373 RYFVLTRF 380 (392)
Q Consensus 373 ~y~~~~r~ 380 (392)
+|+..+|.
T Consensus 132 ~f~~~~~~ 139 (141)
T cd00195 132 EFKKKARE 139 (141)
T ss_pred HHHHHHHH
Confidence 99988763
No 11
>KOG0418|consensus
Probab=100.00 E-value=2.9e-33 Score=254.14 Aligned_cols=139 Identities=34% Similarity=0.622 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhhcCC---CCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 211 RHFRLRKEYNDIKLDP---PDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~---p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
+.+||++|.+++.+++ -.||.+...++++.+.++.|.||+|||||||.|.++|.+|++||++||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 8899999999999998 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846 288 S-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL 366 (392)
Q Consensus 288 ~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l 366 (392)
+ .+|.||||||. +.|.+++||+++|+| ||++| +.|+.++|.+... |+.
T Consensus 84 Ss~tGaICLDilk-------------d~Wa~slTlrtvLis--lQalL-~~pEp~dPqDavv---------------a~q 132 (200)
T KOG0418|consen 84 SSQTGAICLDILK-------------DQWAASLTLRTVLIS--LQALL-CAPEPKDPQDAVV---------------AEQ 132 (200)
T ss_pred Ccccccchhhhhh-------------cccchhhhHHHHHHH--HHHHH-cCCCCCChHHHHH---------------HHH
Confidence 8 59999999997 799999999999998 99999 5999999999666 999
Q ss_pred HHhCHHHHHHHhcC
Q psy2846 367 ISSDQWRYFVLTRF 380 (392)
Q Consensus 367 ~~~d~~~y~~~~r~ 380 (392)
|.+|++.|.+-+||
T Consensus 133 y~~n~~~F~~TAr~ 146 (200)
T KOG0418|consen 133 YVDNYEMFYKTARY 146 (200)
T ss_pred HhhhHHHHHHHHHH
Confidence 99999999999887
No 12
>KOG0424|consensus
Probab=100.00 E-value=2e-32 Score=239.33 Aligned_cols=144 Identities=28% Similarity=0.504 Sum_probs=132.7
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCC-----CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-----NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI 282 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-----~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I 282 (392)
++.++.||+.|-+.+.++.|.|+++.|.. .|++.|++.|.|+++|+||||.|.+.+.||++||.+||+++|.+++
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 45679999999999999999999999864 3799999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHH
Q psy2846 283 FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTI 362 (392)
Q Consensus 283 fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~ 362 (392)
||||||++|.|||+||+.+ .+|+|+.||.+||++ ||.|| ..||..+|++.+|
T Consensus 82 ~HPNVypsgtVcLsiL~e~-----------~~W~paitikqiL~g--IqdLL-~~Pn~~~pAq~eA-------------- 133 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNEE-----------KDWRPAITIKQILLG--IQDLL-DTPNITSPAQTEA-------------- 133 (158)
T ss_pred cCCCcCCCCcEehhhhccc-----------cCCCchhhHHHHHHH--HHHHh-cCCCCCCchhhHH--------------
Confidence 9999999999999999832 459999999999998 99998 6999999999777
Q ss_pred HHHHHHhCHHHHHHHhcC
Q psy2846 363 IADLISSDQWRYFVLTRF 380 (392)
Q Consensus 363 ~A~l~~~d~~~y~~~~r~ 380 (392)
-..|..|+.+|+..+|-
T Consensus 134 -~~~~~~~r~eYekrvr~ 150 (158)
T KOG0424|consen 134 -YTIYCQDRAEYEKRVRA 150 (158)
T ss_pred -HHHHhhCHHHHHHHHHH
Confidence 78899999999987763
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=1.4e-31 Score=236.47 Aligned_cols=138 Identities=39% Similarity=0.713 Sum_probs=129.8
Q ss_pred HHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCC
Q psy2846 213 FRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG 291 (392)
Q Consensus 213 kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G 291 (392)
+||++|++++++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988775 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCH
Q psy2846 292 DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQ 371 (392)
Q Consensus 292 ~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~ 371 (392)
.||+++|. .++|+|+++|++||.+ |+++|. +|+.++|+|.+| |++|++|+
T Consensus 81 ~icl~~l~------------~~~W~p~~~l~~il~~--i~~~l~-~p~~~~~~n~ea---------------a~~~~~~~ 130 (145)
T smart00212 81 EICLDILK------------QEKWSPATTLETVLLS--IQSLLS-EPNPDSPLNADA---------------ATLYKKNR 130 (145)
T ss_pred CEehhhcC------------CCCCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHHHHCH
Confidence 99999986 3689999999999997 999885 799999999776 99999999
Q ss_pred HHHHHHhcC
Q psy2846 372 WRYFVLTRF 380 (392)
Q Consensus 372 ~~y~~~~r~ 380 (392)
+.|+..+|.
T Consensus 131 ~~f~~~~~~ 139 (145)
T smart00212 131 EEFKKKARE 139 (145)
T ss_pred HHHHHHHHH
Confidence 999988874
No 14
>KOG0427|consensus
Probab=99.96 E-value=1.3e-28 Score=212.49 Aligned_cols=148 Identities=22% Similarity=0.449 Sum_probs=135.3
Q ss_pred cCCCCCcCccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcC
Q psy2846 197 IRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKV 276 (392)
Q Consensus 197 ~~~s~~s~~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V 276 (392)
.+.+.++....+..+.+||+|||.+++.++|.|+... ..+|+.+|.+-+.|.+||.|+|..|.+.+.||+.||++.|+|
T Consensus 2 tss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV 80 (161)
T KOG0427|consen 2 TSSSAPSRKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV 80 (161)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence 3344344567788999999999999999999999887 778999999999999999999999999999999999999999
Q ss_pred cccccc-ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhh----
Q psy2846 277 KFITRI-FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCS---- 351 (392)
Q Consensus 277 ~F~T~I-fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~---- 351 (392)
.|..++ .||+||.+|.|||+||. ++|+|++++.+|.+| |.++|.+.+....|.+++-|.+
T Consensus 81 mF~~~~P~HPHiYSNGHICL~iL~-------------d~WsPAmsv~SvClS--IlSMLSSs~eKqrP~Dn~~Yvk~C~~ 145 (161)
T KOG0427|consen 81 MFVGPAPLHPHIYSNGHICLDILY-------------DSWSPAMSVQSVCLS--ILSMLSSSKEKQRPTDNDRYVKNCKN 145 (161)
T ss_pred EEecCCCCCCceecCCeEEEEeec-------------ccCCcchhhHHHHHH--HHHHHccCccccCCCccchhhhhccC
Confidence 999986 79999999999999997 899999999999998 9999999999999999999984
Q ss_pred -hhhhhhhhH
Q psy2846 352 -VSRACTRWF 360 (392)
Q Consensus 352 -~~~~~~~w~ 360 (392)
.+.+.||||
T Consensus 146 grsPk~TrWw 155 (161)
T KOG0427|consen 146 GRSPKETRWW 155 (161)
T ss_pred CCCcccceee
Confidence 455788887
No 15
>KOG0422|consensus
Probab=99.95 E-value=1.5e-28 Score=214.00 Aligned_cols=138 Identities=29% Similarity=0.482 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcee-eeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQA-QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v-~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~ 288 (392)
.+.+||++||.+|++++...+.- ..+++++..|++.|. |++.||..|.|+++|.||.+|||+||+|+|.|+||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 35789999999999998876543 345679999999999 8999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
+.|.||+.||. .|+|.|++++++||.+ +..++ .+|+.+.|+..+. |..|.
T Consensus 81 e~gqvClPiis------------~EnWkP~T~teqVlqa--Li~li-N~P~pe~plr~dl---------------A~ey~ 130 (153)
T KOG0422|consen 81 EKGQVCLPIIS------------AENWKPATRTEQVLQA--LIALI-NDPEPEHPLRIDL---------------AEEYI 130 (153)
T ss_pred CCCceeeeeee------------cccccCcccHHHHHHH--HHHHh-cCCCccccchhhH---------------HHHHH
Confidence 99999999998 6899999999999997 88877 6999999999666 99999
Q ss_pred hCHHHHHHHh
Q psy2846 369 SDQWRYFVLT 378 (392)
Q Consensus 369 ~d~~~y~~~~ 378 (392)
+|+..|...+
T Consensus 131 ~d~~kF~K~A 140 (153)
T KOG0422|consen 131 KDPKKFVKNA 140 (153)
T ss_pred HCHHHHHHhH
Confidence 9999987654
No 16
>KOG0420|consensus
Probab=99.94 E-value=6.5e-27 Score=210.12 Aligned_cols=141 Identities=25% Similarity=0.447 Sum_probs=120.1
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceee--eCCCCc--cEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQ--PLDNKR--CHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~--p~~~dl--~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~ 281 (392)
...+.+.-||++|+.++. .|++++.. ...+++ .+++++|. |+++.|+||.|.|.+.+|+.||+.||+|+|+|+
T Consensus 24 ~~~s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 24 KKVSAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred ccccHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 445667777777776665 55555432 222333 35999999 999999999999999999999999999999999
Q ss_pred cccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHH
Q psy2846 282 IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFT 361 (392)
Q Consensus 282 IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~ 361 (392)
||||||+.+|.|||+||. ++|+|+.+|.+|+.+ ++.++ .+|+.++|+|-+|
T Consensus 101 V~HPNId~~GnVCLnILR-------------edW~P~lnL~sIi~G--L~~LF-~epn~eDpLN~eA------------- 151 (184)
T KOG0420|consen 101 VYHPNIDLDGNVCLNILR-------------EDWRPVLNLNSIIYG--LQFLF-LEPNPEDPLNKEA------------- 151 (184)
T ss_pred cccCCcCCcchHHHHHHH-------------hcCccccchHHHHHH--HHHHh-ccCCCcccccHHH-------------
Confidence 999999999999999998 789999999999998 88877 5999999999666
Q ss_pred HHHHHHHhCHHHHHHHhcC
Q psy2846 362 IIADLISSDQWRYFVLTRF 380 (392)
Q Consensus 362 ~~A~l~~~d~~~y~~~~r~ 380 (392)
|+++++|++.|+-.+|-
T Consensus 152 --A~~l~~n~e~F~~~Vr~ 168 (184)
T KOG0420|consen 152 --AAVLKSNREGFENNVRR 168 (184)
T ss_pred --HHHHHhCHHHHHHHHHH
Confidence 99999999999988774
No 17
>KOG0423|consensus
Probab=99.93 E-value=8.6e-27 Score=209.40 Aligned_cols=145 Identities=26% Similarity=0.489 Sum_probs=136.0
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH 284 (392)
.....-.++.+.+|++.|..+||+||.+.+.++|+...++.|.||.||||++|.|++.+.+..|||++||+-.|+|+|||
T Consensus 5 enlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFH 84 (223)
T KOG0423|consen 5 ENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFH 84 (223)
T ss_pred cCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeecc
Confidence 35566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846 285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA 364 (392)
Q Consensus 285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A 364 (392)
|||..+|.||.+.|. .+|+|...|..||+. |+.+|+ .|+.++.+|.++ .
T Consensus 85 PNVaaNGEICVNtLK-------------kDW~p~LGirHvLlt--ikCLLI-~PnPESALNEeA---------------G 133 (223)
T KOG0423|consen 85 PNVAANGEICVNTLK-------------KDWNPSLGIRHVLLT--IKCLLI-EPNPESALNEEA---------------G 133 (223)
T ss_pred CCcccCceehhhhhh-------------cccCcccchhhHhhh--hheeee-cCChHHHHhHHH---------------H
Confidence 999999999999997 789999999999996 888886 999999999766 9
Q ss_pred HHHHhCHHHHHHHhcC
Q psy2846 365 DLISSDQWRYFVLTRF 380 (392)
Q Consensus 365 ~l~~~d~~~y~~~~r~ 380 (392)
+++.+++++|...+|.
T Consensus 134 kmLLEnYdeYa~rARl 149 (223)
T KOG0423|consen 134 KMLLENYDEYARRARL 149 (223)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999999998885
No 18
>KOG0416|consensus
Probab=99.93 E-value=7.3e-26 Score=203.03 Aligned_cols=137 Identities=24% Similarity=0.467 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-C
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS-R 289 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~-~ 289 (392)
..|||..++..|..+ +..+...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+ .
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 357999999888764 457777889999999999999999999999999999999999999999999999999999 5
Q ss_pred CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846 290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS 369 (392)
Q Consensus 290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~ 369 (392)
+|.|||+.|+ ..|+|.+.+..|+.+ ++=+|| +.||..+|+|.+| |.+|..
T Consensus 81 SGsVCLDViN-------------QtWSp~yDL~NIfet-fLPQLL-~YPNp~DPLN~eA---------------Aal~l~ 130 (189)
T KOG0416|consen 81 SGSVCLDVIN-------------QTWSPLYDLVNIFET-FLPQLL-RYPNPSDPLNGEA---------------AALYLR 130 (189)
T ss_pred cCccHHHHHh-------------hhhhHHHHHHHHHHH-HhHHHh-cCCCCCCCcccHH---------------HHHHhc
Confidence 9999999998 689999999999987 555555 7999999999877 999999
Q ss_pred CHHHHHHHhcC
Q psy2846 370 DQWRYFVLTRF 380 (392)
Q Consensus 370 d~~~y~~~~r~ 380 (392)
++++|+..+|-
T Consensus 131 ~~~~Y~~~v~e 141 (189)
T KOG0416|consen 131 DPEEYEEKVKE 141 (189)
T ss_pred CHHHHHHHHHH
Confidence 99999987764
No 19
>KOG0894|consensus
Probab=99.92 E-value=1.8e-24 Score=200.53 Aligned_cols=150 Identities=22% Similarity=0.357 Sum_probs=120.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc--ccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR--IFH 284 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~--IfH 284 (392)
++..+.|||+|||+.|+++|.++|.+.|..+|+.+||.+|.||++|||+||.|+.+|.||.+||++||-|+++|| .|-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 347899999999999999999999999999999999999999999999999999999999999999999999995 444
Q ss_pred ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhh------------hh
Q psy2846 285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLC------------SV 352 (392)
Q Consensus 285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~------------~~ 352 (392)
+| -++||+|-+ .|++.|+|.+++.+||.+ +.++|..+--..--.+-..+. =.
T Consensus 82 tn----tRLCLSiSD----------fHPdsWNP~WsVStILtG--LlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN~k 145 (244)
T KOG0894|consen 82 TN----TRLCLSISD----------FHPDSWNPGWSVSTILTG--LLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFNLK 145 (244)
T ss_pred cC----ceEEEeccc----------cCcCcCCCcccHHHHHHH--HHHHHhcCCCccCcccccHHHHHHHHHhhhhhccC
Confidence 44 789999765 889999999999999998 999997332222222222222 11
Q ss_pred hhhhhhhHHHHHHHHHhCHH
Q psy2846 353 SRACTRWFTIIADLISSDQW 372 (392)
Q Consensus 353 ~~~~~~w~~~~A~l~~~d~~ 372 (392)
..+.+..|.++-+.|....-
T Consensus 146 n~~F~~lFPE~Vee~nq~~~ 165 (244)
T KOG0894|consen 146 NPKFCELFPEVVEEYNQEQL 165 (244)
T ss_pred ChHHHHHhHHHHHHHHHHHH
Confidence 22345666777666655433
No 20
>KOG0428|consensus
Probab=99.81 E-value=5e-20 Score=173.78 Aligned_cols=137 Identities=27% Similarity=0.486 Sum_probs=114.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN 286 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN 286 (392)
-.+.+.|||++|.++|+ +|.+.+.+.|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+| ||
T Consensus 8 ~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pN 82 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PN 82 (314)
T ss_pred ccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CC
Confidence 35789999999999999 78888899999999999999999999999999999999999999999999999988 55
Q ss_pred cc--CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhh-----hhhhhhhhh
Q psy2846 287 VS--RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLC-----SVSRACTRW 359 (392)
Q Consensus 287 V~--~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~-----~~~~~~~~w 359 (392)
-- -+-+|||+|-+ +|+|.|.|+++|++.|+. |+.+|-+.|+- .+-...|+ .++++...|
T Consensus 83 GRFE~nkKiCLSISg----------yHPEtWqPSWSiRTALlA--lIgFmPt~p~G--AlGSlDYpp~ERr~LAkkS~e~ 148 (314)
T KOG0428|consen 83 GRFEVNKKICLSISG----------YHPETWQPSWSIRTALLA--LIGFMPTKPEG--ALGSLDYPPEERRALAKKSQEF 148 (314)
T ss_pred CceeeCceEEEEecC----------CCccccCcchhHHHHHHH--HHccccCCCCC--ccccCcCCHHHHHHHHHhhccc
Confidence 42 35689999754 889999999999999997 99999777764 33333343 555555555
Q ss_pred HHH
Q psy2846 360 FTI 362 (392)
Q Consensus 360 ~~~ 362 (392)
-.+
T Consensus 149 ~ck 151 (314)
T KOG0428|consen 149 CCK 151 (314)
T ss_pred Ccc
Confidence 444
No 21
>KOG0895|consensus
Probab=99.74 E-value=3.9e-18 Score=186.22 Aligned_cols=126 Identities=21% Similarity=0.456 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc--cccccc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR--IFHPNV 287 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~--IfHPNV 287 (392)
.-.+..+.|++.|..+.|.||.++..++.|....+.|.||.+|||++|.|.|+|.||.+||..||.|.+.+. .++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 445556667888888999999999999999999999999999999999999999999999999999999886 689999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHh-cCCCCCCC
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQ-RRPRVRFP 343 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~-~~P~~~~P 343 (392)
|.+|+||+++|+ +|.|...|.|+|+.+|.+||+| ||+|+. .+|..+.|
T Consensus 931 y~~g~vc~s~l~------tw~g~~~e~w~~~s~~lq~l~s--~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 931 YEDGKVCLSLLN------TWHGRGNEVWNPSSSILQVLVS--IQGLVLNEEPYFNEA 979 (1101)
T ss_pred ccccceehhhhc------cccCCCccccCcchhHHHHHHH--hhhhhcccccccCcc
Confidence 999999999999 7788889999999999999999 999876 44544433
No 22
>KOG0895|consensus
Probab=99.61 E-value=1.8e-15 Score=165.61 Aligned_cols=128 Identities=27% Similarity=0.454 Sum_probs=116.9
Q ss_pred CcCccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846 202 SSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281 (392)
Q Consensus 202 ~s~~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~ 281 (392)
.+...-+....+|+++|++.+.++.|+||.+++.+.++...+++|.||.+|||++|+|.|.|.||..||..||.|+++|.
T Consensus 274 ~~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~ 353 (1101)
T KOG0895|consen 274 KSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTG 353 (1101)
T ss_pred CCCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeec
Confidence 33345677889999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---cccccccCCCceeccCCCCcccccCCCCcCCCCCccc-ccHHHHHhHHHHHHHHhcC
Q psy2846 282 ---IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRR-HRLYSILFSNSIRDHIQRR 337 (392)
Q Consensus 282 ---IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~-~sI~sILlS~~IqslL~~~ 337 (392)
.+.||.|.+|+||+++|. +|.+...+.|+|. .+|.++|.| ||.++..+
T Consensus 354 ~~~R~nPNlYn~GKVcLslLg------Twtg~~~e~wtp~~~sl~qvL~s--IQ~Li~~e 405 (1101)
T KOG0895|consen 354 GGVRLNPNLYNDGKVCLSLLG------TWTGSRREKWTPNGSSLLQVLES--IQGLILNE 405 (1101)
T ss_pred cceeecCCcccCceEEeeeee------ecccccccCCCccccchhhhhhh--hhhhhccc
Confidence 689999999999999998 5555567899999 889999998 99999644
No 23
>KOG0429|consensus
Probab=99.56 E-value=2.2e-14 Score=134.03 Aligned_cols=136 Identities=24% Similarity=0.399 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCC--CCcCcccccccccccc
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH--PPKVKFITRIFHPNVS 288 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~--PP~V~F~T~IfHPNV~ 288 (392)
.-..|..|+..+.+.+.+||++.|.-.+-+.|.++|++ ..+.|.||+|+|+|.+|++||.. -|+|.|.+.+|||.|.
T Consensus 20 qey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic 98 (258)
T KOG0429|consen 20 QEYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence 34568889999999999999999999999999999995 67899999999999999999954 8999999999999999
Q ss_pred C-CCceeccCCCCcccccCCCCcCCCCCccccc-HHHHHhHHHHHHHHhcCCCCCCC-C-CchhhhhhhhhhhhhHHHHH
Q psy2846 289 R-HGDLSHAPAQGEIYHSNISSECAETWGRRHR-LYSILFSNSIRDHIQRRPRVRFP-L-DDLSLCSVSRACTRWFTIIA 364 (392)
Q Consensus 289 ~-~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~s-I~sILlS~~IqslL~~~P~~~~P-l-n~~a~~~~~~~~~~w~~~~A 364 (392)
+ ++.+|+.-- ...|+-... |.+||.. +|..+. +|+.+.+ + |++ +|
T Consensus 99 p~skeLdl~ra-------------f~eWRk~ehhiwqvL~y--lqriF~-dpd~si~kl~N~e---------------Aa 147 (258)
T KOG0429|consen 99 PKSKELDLNRA-------------FPEWRKEEHHIWQVLVY--LQRIFY-DPDVSIDKLINPE---------------AA 147 (258)
T ss_pred CCccceeHhhh-------------hhhhhccccHHHHHHHH--HHHHhc-CcccchhhhcChH---------------HH
Confidence 5 899999832 345877655 9999996 999885 8877766 4 544 49
Q ss_pred HHHHhCHHHHHHHh
Q psy2846 365 DLISSDQWRYFVLT 378 (392)
Q Consensus 365 ~l~~~d~~~y~~~~ 378 (392)
.+|++++++|...+
T Consensus 148 ~l~~k~r~ef~~rv 161 (258)
T KOG0429|consen 148 VLYKKHRDEFRERV 161 (258)
T ss_pred HHHHHhHHHHHHHH
Confidence 99999999998764
No 24
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.42 E-value=1.1e-13 Score=100.13 Aligned_cols=47 Identities=45% Similarity=0.809 Sum_probs=41.0
Q ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHh
Q psy2846 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLT 162 (392)
Q Consensus 113 ~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~ 162 (392)
+..||+||+.+||+|||+.||+++++|||+|++++.++ .+|++++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~---~lW~~~~~r 47 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN---SLWRRLCLR 47 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC---CHHHHHC--
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh---hhhhhhccC
Confidence 46799999999999999999999999999999999999 999998753
No 25
>KOG0896|consensus
Probab=99.35 E-value=1.2e-12 Score=114.09 Aligned_cols=126 Identities=25% Similarity=0.400 Sum_probs=102.7
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCc-eeeeCC-CC--ccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGI-QAQPLD-NK--RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF 283 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI-~v~p~~-~d--l~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If 283 (392)
...++.||.+|+..-++...+|. +....+ +| +..|..+|.||+.|+||+.+|.++|.+..+||..||.|+|.++|-
T Consensus 3 ~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin 82 (138)
T KOG0896|consen 3 KVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN 82 (138)
T ss_pred ccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee
Confidence 45678999999999988766554 443333 23 678999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCc
Q psy2846 284 HPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDD 346 (392)
Q Consensus 284 HPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~ 346 (392)
-+.|+ .+|.|.-..++ ..++|+-.+++..||.. ++.+|++..|...|.-.
T Consensus 83 m~gvn~~~g~Vd~~~i~-----------~L~~W~~~y~~~~vl~~--lr~~m~~~eN~kl~qp~ 133 (138)
T KOG0896|consen 83 MNGVNSSNGVVDPRDIT-----------VLARWQRSYSIKMVLGQ--LRKEMMSKENRKLPQPP 133 (138)
T ss_pred ecccccCCCccCccccc-----------hhhcccccchhhHHHHh--hhHHHHHHHhhcccCCC
Confidence 88888 47777765443 34799999999999996 88888777776655443
No 26
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.91 E-value=1.8e-09 Score=74.51 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=38.4
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHH
Q psy2846 116 LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRY 158 (392)
Q Consensus 116 LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~ 158 (392)
||.|++.+||+||+..|++++++|||+|+.++.++ .+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~---~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH---DFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh---hhhhc
Confidence 79999999999999999999999999999999999 99975
No 27
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.90 E-value=6.1e-10 Score=80.13 Aligned_cols=47 Identities=28% Similarity=0.602 Sum_probs=40.1
Q ss_pred ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHH
Q psy2846 112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVL 161 (392)
Q Consensus 112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~ 161 (392)
.+..||.|++.+||+||+..|++++++|||+|++++.+. .+|+..++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~---~~~~~~~r 48 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP---RLWKKIIR 48 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH---HHHHHHH-
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC---CccHHHhC
Confidence 355799999999999999999999999999999999999 99998874
No 28
>KOG2997|consensus
Probab=98.51 E-value=7.6e-08 Score=95.41 Aligned_cols=68 Identities=29% Similarity=0.542 Sum_probs=59.4
Q ss_pred ccCCCCHHHHHHHhc-----cCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC----Cc----cCccccchHH
Q psy2846 112 SIHSLPPEVLITVFS-----YLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL----FN----SNITVSNWYS 178 (392)
Q Consensus 112 ~~~~LP~eil~~IFs-----yLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~----~~----~~~~~~~Wkk 178 (392)
.|..||+|||+.||. -||..+|.+||+|||.|+..+.++ ++||..|.+.|+. .. .....++||+
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~---~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~ 182 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP---ELWRLACLKVWQRSCIKLNPKILQSKYYTSWRE 182 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh---HHHHHHHHHHHHHhhhccchhhhhhHHHhHHHH
Confidence 467899999999996 578899999999999999999999 9999999999985 11 2446789999
Q ss_pred HHHh
Q psy2846 179 VYAK 182 (392)
Q Consensus 179 ~Y~k 182 (392)
|+.+
T Consensus 183 Mfl~ 186 (366)
T KOG2997|consen 183 MFLE 186 (366)
T ss_pred HHhh
Confidence 9987
No 29
>KOG0281|consensus
Probab=98.39 E-value=2.3e-07 Score=92.88 Aligned_cols=51 Identities=29% Similarity=0.638 Sum_probs=48.6
Q ss_pred CCccCCCC----HHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhh
Q psy2846 110 GSSIHSLP----PEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTR 163 (392)
Q Consensus 110 ~~~~~~LP----~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~ 163 (392)
+||++.|| ++|.+.||||||..|||.|-+|||+|++++.++ .+||+++.+.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg---~~WKkLie~~ 126 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG---MLWKKLIERM 126 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc---hHHHHHHHHh
Confidence 34999999 999999999999999999999999999999999 9999999885
No 30
>KOG2120|consensus
Probab=98.31 E-value=5.6e-07 Score=89.37 Aligned_cols=47 Identities=36% Similarity=0.641 Sum_probs=43.5
Q ss_pred ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHH
Q psy2846 112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVL 161 (392)
Q Consensus 112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~ 161 (392)
..++||+||++.|||.|-.++|++++.||||||+++.|+ .+|..+=.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de---~lW~~lDl 143 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE---SLWQTLDL 143 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc---cceeeecc
Confidence 467999999999999999999999999999999999999 99986543
No 31
>KOG3926|consensus
Probab=97.76 E-value=4.9e-05 Score=74.30 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=71.0
Q ss_pred cccCCCCCCccCCCCHHHHHHHhccC-CHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC-------CccCcccc
Q psy2846 103 LTSQNTGGSSIHSLPPEVLITVFSYL-DDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL-------FNSNITVS 174 (392)
Q Consensus 103 ~~~~~~~~~~~~~LP~eil~~IFsyL-d~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~-------~~~~~~~~ 174 (392)
.+.++..+..+..||.|+++.|...| |..||..++||--.-+.++++. .+||++|.-.|.- .-...+..
T Consensus 192 i~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~---~iWkkLcqfHF~erQi~~~l~l~k~~q~ 268 (332)
T KOG3926|consen 192 ITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER---RIWKKLCQFHFNERQIHTILILSKKGQK 268 (332)
T ss_pred ccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHhhhhccccch
Confidence 33444456788899999999998888 8999999999999999999988 9999999977653 44556778
Q ss_pred chHHHHHhhhccCCcc
Q psy2846 175 NWYSVYAKLVESTPCY 190 (392)
Q Consensus 175 ~Wkk~Y~kLves~pc~ 190 (392)
+||.||.+|...-||+
T Consensus 269 dWkqmyf~L~r~yg~k 284 (332)
T KOG3926|consen 269 DWKQMYFQLRRTYGVK 284 (332)
T ss_pred hHHHHHHHHHHhcChH
Confidence 9999999999887764
No 32
>KOG0274|consensus
Probab=97.68 E-value=2.6e-05 Score=83.24 Aligned_cols=56 Identities=21% Similarity=0.440 Sum_probs=49.7
Q ss_pred CCCCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC
Q psy2846 108 TGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL 166 (392)
Q Consensus 108 ~~~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~ 166 (392)
..++++..||.|+..+||+|||.++|++++|||+.|+.+++++ ..|.+.+......
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~---~~~~~~~~~~~~~ 158 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD---KVWWRMCRELIGR 158 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc---chhhhhhhhhccc
Confidence 3445999999999999999999999999999999999999999 8888887775443
No 33
>KOG4341|consensus
Probab=97.67 E-value=2.3e-05 Score=80.68 Aligned_cols=50 Identities=42% Similarity=0.755 Sum_probs=43.8
Q ss_pred ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhC
Q psy2846 112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRF 164 (392)
Q Consensus 112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~ 164 (392)
....||+|++++||||||..+|++|+|||+-||..+.|. .-|+.+=...+
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~---~~~q~idL~t~ 120 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG---SCWQHIDLFTF 120 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc---ccceeeehhcc
Confidence 455699999999999999999999999999999999999 77886644444
No 34
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.65 E-value=8.9e-05 Score=65.19 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=57.7
Q ss_pred CCcEEEEEEEeCCCCCCCCCcCcccccc---ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHH
Q psy2846 255 EGGVFYLYIRIPFSYPMHPPKVKFITRI---FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIR 331 (392)
Q Consensus 255 egG~F~~~I~fP~dYP~~PP~V~F~T~I---fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~Iq 331 (392)
.|+.|.+.|.+|++||..||.|....+. +-|||+.+|.+|+--- +...+.|.|.-++..+|.. ++
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~----------~~~~D~~~P~~~~~~~l~~--a~ 101 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDE----------ELVLDPWDPEGIIADCLER--AI 101 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecC----------CcccCccCHHHHHHHHHHH--HH
Confidence 6899999999999999999999888654 6899999999999411 1224799999999999985 78
Q ss_pred HHHh
Q psy2846 332 DHIQ 335 (392)
Q Consensus 332 slL~ 335 (392)
.+|.
T Consensus 102 ~lL~ 105 (133)
T PF14461_consen 102 RLLE 105 (133)
T ss_pred HHHH
Confidence 8885
No 35
>KOG0897|consensus
Probab=97.53 E-value=8.3e-05 Score=63.90 Aligned_cols=74 Identities=15% Similarity=0.325 Sum_probs=53.9
Q ss_pred EEEEEEeCCCCCCCCCcCccccccccc-cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHh-c
Q psy2846 259 FYLYIRIPFSYPMHPPKVKFITRIFHP-NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQ-R 336 (392)
Q Consensus 259 F~~~I~fP~dYP~~PP~V~F~T~IfHP-NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~-~ 336 (392)
..+.+.|+++||+.||.++-..|+-.- -|-.+|.||+.+|+ .++|+.+++|+.+++. |-..+. .
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt------------~qgwssay~Ve~vi~q--iaatlVkG 78 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT------------KQGWSSAYEVERVIMQ--IAATLVKG 78 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc------------cccccchhhHHHHHHH--HHHHhhcc
Confidence 456788999999999999876643221 22258999999998 5799999999999995 666553 3
Q ss_pred CCCCCCCCCc
Q psy2846 337 RPRVRFPLDD 346 (392)
Q Consensus 337 ~P~~~~Pln~ 346 (392)
.-...+|++.
T Consensus 79 ~~ri~~~a~k 88 (122)
T KOG0897|consen 79 GARIEFPAEK 88 (122)
T ss_pred ceeEecCcch
Confidence 3334456543
No 36
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.12 E-value=0.00036 Score=60.77 Aligned_cols=77 Identities=21% Similarity=0.360 Sum_probs=49.5
Q ss_pred ccEEEEEEecCCCCCCCCcEEE--EEEEeCCCCCCCCCcCcccccc-----ccccccCCCceeccCCCCcccccCCCCcC
Q psy2846 239 RCHWMATIAGPVASPYEGGVFY--LYIRIPFSYPMHPPKVKFITRI-----FHPNVSRHGDLSHAPAQGEIYHSNISSEC 311 (392)
Q Consensus 239 l~~W~v~I~GP~~TPYegG~F~--~~I~fP~dYP~~PP~V~F~T~I-----fHPNV~~~G~VCL~iL~~~~~~~~~~~~~ 311 (392)
+....++|. -.|+|..|. +.|-+|.+||..||.+...... -+.+|+.+|+|.+..|+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~------------ 95 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ------------ 95 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH------------
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc------------
Confidence 445555554 357787775 5566899999999998775432 24499999999999886
Q ss_pred CCCCcc-cccHHHHHhHHHHHHHHh
Q psy2846 312 AETWGR-RHRLYSILFSNSIRDHIQ 335 (392)
Q Consensus 312 ~e~WsP-~~sI~sILlS~~IqslL~ 335 (392)
+|++ ..+|..++.. ++..+.
T Consensus 96 --~W~~~~s~L~~lv~~--l~~~F~ 116 (121)
T PF05743_consen 96 --NWNPPSSNLVDLVQE--LQAVFS 116 (121)
T ss_dssp --T--TTTS-HHHHHHH--HHHCCC
T ss_pred --cCCCCCCCHHHHHHH--HHHHHh
Confidence 8888 5667777764 555443
No 37
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=96.81 E-value=0.0026 Score=54.18 Aligned_cols=96 Identities=18% Similarity=0.328 Sum_probs=71.1
Q ss_pred ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC---CccCccccchHHHHHhhhccCC
Q psy2846 112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL---FNSNITVSNWYSVYAKLVESTP 188 (392)
Q Consensus 112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~---~~~~~~~~~Wkk~Y~kLves~p 188 (392)
.+..+|-+++.-|+..+.+..|.++-.-|. .|+.+. ++||+++|.+.||. -.......+|+++|.++.+..
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np---~l~~~t--deLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~e~- 76 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNP---HLIEDT--DELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKKER- 76 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCC---Ccchhh--HHHHHHHHHhHCcChhhcccccccchHHHHHHHHHHHH-
Confidence 467799999999999999999999999884 444332 49999999999985 222334469999999876531
Q ss_pred ccceeccccCCCCCcCccccHHHHHHHHHHHHHhhcCCCCC
Q psy2846 189 CYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDG 229 (392)
Q Consensus 189 c~~~~~~m~~~s~~s~~~~~s~a~kRL~kEl~~L~k~~p~g 229 (392)
......+..||.+-++..++....+
T Consensus 77 ----------------e~~~~~~~~~L~~~~~~~~~~K~~~ 101 (109)
T PF06881_consen 77 ----------------EEKLKEATERLRKKIKKLQQEKQSR 101 (109)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHhcCccC
Confidence 1122345678888888887766554
No 38
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.48 E-value=0.011 Score=52.90 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHHHHhhcC-------CCCCceeeeCCCCccEEEEEEecCCCCCCCCcE--EEEEEEeCCCCCCCCCcC
Q psy2846 206 EDNTWRHFRLRKEYNDIKLD-------PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGV--FYLYIRIPFSYPMHPPKV 276 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~-------~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~--F~~~I~fP~dYP~~PP~V 276 (392)
.....-..||..||+.|-+. ..+.+.+.. +.+=..|.+..-= .|+--. |.+++.+|..||..||.+
T Consensus 20 rd~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 20 RDGDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcce
Confidence 34467789999999987541 222344432 2222334332210 112223 455566799999999998
Q ss_pred cccccc-ccccccCCCceeccC
Q psy2846 277 KFITRI-FHPNVSRHGDLSHAP 297 (392)
Q Consensus 277 ~F~T~I-fHPNV~~~G~VCL~i 297 (392)
..-.-- --.-.|..|+|||++
T Consensus 95 ~lPeLdGKTaKMYRGGkIClt~ 116 (161)
T PF08694_consen 95 ALPELDGKTAKMYRGGKICLTD 116 (161)
T ss_dssp B-GGGTTT-SSBCCCCBB---T
T ss_pred eccccCCchhhhhcCceEeeec
Confidence 763210 012345689999984
No 39
>KOG2391|consensus
Probab=94.37 E-value=0.12 Score=52.41 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCc-eeeeCCC--CccEEEEEEecCCCCCCCCcEEEEE--EEeCCCCCCCCCcCccccc---
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGI-QAQPLDN--KRCHWMATIAGPVASPYEGGVFYLY--IRIPFSYPMHPPKVKFITR--- 281 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI-~v~p~~~--dl~~W~v~I~GP~~TPYegG~F~~~--I~fP~dYP~~PP~V~F~T~--- 281 (392)
.+.+-+..-+.....-.|.-- +...++. .++...++|. .+|.|..|.+= |-+.+.||..||.+.....
T Consensus 20 ~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M 95 (365)
T KOG2391|consen 20 LTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTM 95 (365)
T ss_pred hHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchh
Confidence 344445555555444333322 2222222 4555555553 57888887755 4569999999998865432
Q ss_pred --cccccccCCCceeccCCCCcccccCCCCcCCCCCccccc-HHHHHhHHHHHHHHhcC
Q psy2846 282 --IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHR-LYSILFSNSIRDHIQRR 337 (392)
Q Consensus 282 --IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~s-I~sILlS~~IqslL~~~ 337 (392)
-.|-+|+.+|+|-|..|+ .|.+..+ |..++. .+.+.+...
T Consensus 96 ~ik~~~hVd~nG~V~LPYLh--------------~W~~pssdLv~Liq--~l~a~f~~~ 138 (365)
T KOG2391|consen 96 IIKVHEHVDPNGKVYLPYLH--------------NWDPPSSDLVGLIQ--ELIAAFSED 138 (365)
T ss_pred hhHHhhccCCCCeEechhhc--------------cCCCccchHHHHHH--HHHHHhcCC
Confidence 138999999999999997 8998777 444443 244555433
No 40
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=93.44 E-value=0.15 Score=41.93 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEec--CCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAG--PVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281 (392)
Q Consensus 213 kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~G--P~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~ 281 (392)
.+...|+..|+.-=+..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+.++
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 466788888886544333 22233445566777732 234444556899999999999999999876553
No 41
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=93.33 E-value=0.63 Score=40.92 Aligned_cols=99 Identities=17% Similarity=0.285 Sum_probs=62.6
Q ss_pred CceeeeCCCCccEEEEEEec--CCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-CC-Cce--eccCCCCcc
Q psy2846 229 GIQAQPLDNKRCHWMATIAG--PVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS-RH-GDL--SHAPAQGEI 302 (392)
Q Consensus 229 gI~v~p~~~dl~~W~v~I~G--P~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~-~~-G~V--CL~iL~~~~ 302 (392)
|+......+.-..|.+ |.| -+.+.|.+..-.+.|.+|..||..+|.+.+..+ -+. .+ |.| |-+......
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQTFD 87 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhhcC
Confidence 5555555554445655 666 466779999999999999999999998877654 332 23 334 444333222
Q ss_pred cccC-CCCcCCCCCccccc-HHHHHhHHHHHHHH
Q psy2846 303 YHSN-ISSECAETWGRRHR-LYSILFSNSIRDHI 334 (392)
Q Consensus 303 ~~~~-~~~~~~e~WsP~~s-I~sILlS~~IqslL 334 (392)
+..+ ..+.|...|+|... |.+.|.- |...|
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~--v~~~L 119 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLAR--VEHAL 119 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHH--HHHHH
Confidence 2111 12456788999766 8887774 55555
No 42
>PF13013 F-box-like_2: F-box-like domain
Probab=92.59 E-value=0.17 Score=43.55 Aligned_cols=30 Identities=37% Similarity=0.662 Sum_probs=27.8
Q ss_pred ccCCCCHHHHHHHhccCCHHHHHHHHHHhH
Q psy2846 112 SIHSLPPEVLITVFSYLDDLSLCSVSRACT 141 (392)
Q Consensus 112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk 141 (392)
.+.+||.||+..||.|++..+|..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 467799999999999999999999999998
No 43
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=91.96 E-value=0.53 Score=38.48 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=27.0
Q ss_pred EEEEEEecCCC-CCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846 241 HWMATIAGPVA-SPYEGGVFYLYIRIPFSYPMHPPKVKFIT 280 (392)
Q Consensus 241 ~W~v~I~GP~~-TPYegG~F~~~I~fP~dYP~~PP~V~F~T 280 (392)
.+.+.+..... +.-..-.+.+.+.||.+||..+|.|.+.+
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence 45555542211 12234568899999999999999988754
No 44
>KOG3357|consensus
Probab=91.74 E-value=0.28 Score=43.57 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcE----------EEEEEEeCCCCCCCCCc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGV----------FYLYIRIPFSYPMHPPK 275 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~----------F~~~I~fP~dYP~~PP~ 275 (392)
.....-.+||..||+.|-.. ++...++-..|.-.=.-+.||-|-|.+ |.+++.+|-.||..+|.
T Consensus 23 rd~~~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 23 RDGDLWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred ccchHHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 44567789999999998642 221111112232222446777776643 44555669999999999
Q ss_pred Ccccccc-ccccccCCCceecc
Q psy2846 276 VKFITRI-FHPNVSRHGDLSHA 296 (392)
Q Consensus 276 V~F~T~I-fHPNV~~~G~VCL~ 296 (392)
+..-.-- ----.|..|+|||.
T Consensus 97 ialpeldgktakmyrggkiclt 118 (167)
T KOG3357|consen 97 IALPELDGKTAKMYRGGKICLT 118 (167)
T ss_pred ccccccCchhhhhhcCceEeec
Confidence 8652100 01123458999997
No 45
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.87 E-value=0.21 Score=51.49 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=33.8
Q ss_pred cCCCCHHHHHHHhccC-CHHHHHHHHHHhHHHHHHHhC
Q psy2846 113 IHSLPPEVLITVFSYL-DDLSLCSVSRACTRWFTIIAD 149 (392)
Q Consensus 113 ~~~LP~eil~~IFsyL-d~~sL~~~~~VCk~W~~i~~~ 149 (392)
...||+|||..|...| ...|+.+.+.|||.|+..+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4579999999999999 688999999999999998764
No 46
>KOG4408|consensus
Probab=78.12 E-value=0.43 Score=48.51 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=49.5
Q ss_pred ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCCCc
Q psy2846 112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFN 168 (392)
Q Consensus 112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~~~ 168 (392)
.+..||..++..|.++|+.++|.+|+.|.++-..+.... .+|.+.|++.|.+..
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~---~lw~r~c~k~l~is~ 60 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHL---PLWNRPCKKYLLISE 60 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhcc---ccccccccccccccc
Confidence 567799999999999999999999999999999999999 999999998887643
No 47
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=76.97 E-value=3.8 Score=37.56 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred EEEEeCCCCCCCCCcCccccccc---cccccCC-----CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHH
Q psy2846 261 LYIRIPFSYPMHPPKVKFITRIF---HPNVSRH-----GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRD 332 (392)
Q Consensus 261 ~~I~fP~dYP~~PP~V~F~T~If---HPNV~~~-----G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~Iqs 332 (392)
+.|.|+.+||..+|.|.++-+.| +|+++.. ..+|+.--. ...|.+..++..+|.- |..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~------------~~e~~~~~g~~~~l~r--l~~ 122 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP------------WSEWRPSWGPEGFLDR--LFD 122 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC------------HHHhhhccCHHHHHHH--HHH
Confidence 45889999999999877776644 5777754 679997443 3689999999888874 555
Q ss_pred HH
Q psy2846 333 HI 334 (392)
Q Consensus 333 lL 334 (392)
-|
T Consensus 123 Wl 124 (162)
T PF14457_consen 123 WL 124 (162)
T ss_pred HH
Confidence 44
No 48
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=74.91 E-value=2.8 Score=34.53 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.5
Q ss_pred CccCCCCHHHHHHHhccCCHHHHHHH
Q psy2846 111 SSIHSLPPEVLITVFSYLDDLSLCSV 136 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd~~sL~~~ 136 (392)
..+..||.||-.+|++||+..||...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 47889999999999999999999764
No 49
>KOG0309|consensus
Probab=46.72 E-value=63 Score=36.68 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCc-EEEEEEEeCCCCCCC-CCcCccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGG-VFYLYIRIPFSYPMH-PPKVKFITR 281 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG-~F~~~I~fP~dYP~~-PP~V~F~T~ 281 (392)
.......+-|.+|+.-|-..- .++.+.-.+-.-..-.+.+.||-..- .|- ..++.|.||.+||.+ +|.++|..+
T Consensus 416 ~~n~~~pQnLgeE~S~Ig~k~-~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 416 LFNETLPQNLGEEFSLIGVKI-RNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred ccchhhhhhHHhHHhHhhccc-cccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 334556667888887775432 23444333322234556666654332 222 346778899999998 889998754
No 50
>PHA03100 ankyrin repeat protein; Provisional
Probab=44.26 E-value=17 Score=37.34 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=25.8
Q ss_pred ccCCCCHHHHHHHhccCCHHHHHHHHHHhH
Q psy2846 112 SIHSLPPEVLITVFSYLDDLSLCSVSRACT 141 (392)
Q Consensus 112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk 141 (392)
....||.||-.+|++||+..||-....-|+
T Consensus 447 ~w~~lP~Eik~~Il~~l~~~dl~~~~~~~~ 476 (480)
T PHA03100 447 YWNILPIEIKYKILEYLSNRDLKSLIENFT 476 (480)
T ss_pred chhhCcHHHHHHHHHhCCHHHHHHHHhhhc
Confidence 677899999999999999999987765554
No 51
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=37.06 E-value=53 Score=32.95 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKF 278 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F 278 (392)
....+|.+|+.++..+..- .+ ..++++...++.+.. + +....++|.+|.+||.++|.+..
T Consensus 99 ~~ys~ll~EIe~IGW~kl~--~i-~~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~ 158 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKLV--QI-QFDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSL 158 (291)
T ss_dssp GGC-CHHHHHHHHHCGCCE--EE-EE-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS
T ss_pred HHHHHHHHHHHHhccccce--EE-ecCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeC
Confidence 4466899999999876442 22 237788889999872 2 26788999999999999997543
No 52
>KOG4018|consensus
Probab=34.87 E-value=72 Score=30.77 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCCCCc-eeeeCCCCccEEEEEEecCCCCCCCC--cEEEEEEEeCCCCCCCCCcCc
Q psy2846 215 LRKEYNDIKLDPPDGI-QAQPLDNKRCHWMATIAGPVASPYEG--GVFYLYIRIPFSYPMHPPKVK 277 (392)
Q Consensus 215 L~kEl~~L~k~~p~gI-~v~p~~~dl~~W~v~I~GP~~TPYeg--G~F~~~I~fP~dYP~~PP~V~ 277 (392)
...|+..|...-+.-+ .+ .+.++..+.++|. ...+-+.. |.+.+.+.++.+||..||.+.
T Consensus 7 Qe~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHI--NSEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred HHHHHHHHHHhccchhhhh--hccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCccee
Confidence 4556777765544443 22 2233444666776 32222211 278999999999999999983
No 53
>PHA03095 ankyrin-like protein; Provisional
Probab=31.83 E-value=39 Score=34.54 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhccCCHHHHHHHH
Q psy2846 114 HSLPPEVLITVFSYLDDLSLCSVS 137 (392)
Q Consensus 114 ~~LP~eil~~IFsyLd~~sL~~~~ 137 (392)
..||.||-.+|++||+..||-.+.
T Consensus 443 ~~lP~Ei~~~Il~~l~~~dl~~~~ 466 (471)
T PHA03095 443 CALPPEIVMRILDFLPDDDLRNLL 466 (471)
T ss_pred CCCCHHHHHHHHHhCCHHHHHHHh
Confidence 789999999999999999996643
No 54
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.00 E-value=27 Score=35.36 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.8
Q ss_pred CccCCCCHHHHHHHhccCCHHHHHHH
Q psy2846 111 SSIHSLPPEVLITVFSYLDDLSLCSV 136 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd~~sL~~~ 136 (392)
..+..||.||-.+|++||+..||...
T Consensus 385 ~~w~~LP~Eik~~Il~~l~~~dL~~~ 410 (413)
T PHA02875 385 SKWNILPHEIKYLILEKIGNKDIDIA 410 (413)
T ss_pred cchhcCcHHHHHHHHHHhccchhhhh
Confidence 45677999999999999999999764
No 55
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=27.21 E-value=28 Score=31.99 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=17.0
Q ss_pred ccccccc---ccccCCCceeccCCC
Q psy2846 278 FITRIFH---PNVSRHGDLSHAPAQ 299 (392)
Q Consensus 278 F~T~IfH---PNV~~~G~VCL~iL~ 299 (392)
-.|+.|| +||+.+|+||+.-..
T Consensus 88 ~~T~Ly~aPf~NV~~~g~vC~G~~~ 112 (175)
T PF14460_consen 88 PDTPLYHAPFFNVYSNGSVCWGNNS 112 (175)
T ss_pred CCCeeEeCCccccCCCCcEeeCCCc
Confidence 4566776 599999999998543
No 56
>PHA02989 ankyrin repeat protein; Provisional
Probab=25.89 E-value=57 Score=34.18 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.8
Q ss_pred CccCCCCHHHHHHHhccCCHHHHHHHHH
Q psy2846 111 SSIHSLPPEVLITVFSYLDDLSLCSVSR 138 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd~~sL~~~~~ 138 (392)
..+..||.||-.+|++||+..||-....
T Consensus 457 ~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 457 NYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred cHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 3667899999999999999999966544
No 57
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=23.97 E-value=1.2e+02 Score=26.48 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=16.1
Q ss_pred hHHHHHHHhhCCCCccCccccchHHHHHhhhc
Q psy2846 154 DQWRYFVLTRFPLFNSNITVSNWYSVYAKLVE 185 (392)
Q Consensus 154 ~lW~~~~~~~~~~~~~~~~~~~Wkk~Y~kLve 185 (392)
.+|+++-.. ..+|+.+|+.|+-
T Consensus 41 ~l~kRL~~~----------~k~WR~vyKaL~l 62 (123)
T cd03571 41 MLWKRLNDK----------GKNWRHVYKALTL 62 (123)
T ss_pred HHHHHHHhc----------cccHHHHHHHHHH
Confidence 678877554 5688999988654
No 58
>PHA02878 ankyrin repeat protein; Provisional
Probab=23.89 E-value=56 Score=34.01 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=23.1
Q ss_pred CccCCCCHHHHHHHhccCCHHHHHHH
Q psy2846 111 SSIHSLPPEVLITVFSYLDDLSLCSV 136 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd~~sL~~~ 136 (392)
..+..||.||-.+|++||+..||...
T Consensus 445 ~~w~~lP~Eik~~Il~~l~~~dl~~~ 470 (477)
T PHA02878 445 YMWNRLPLEIKHYIMELLDDASLCNM 470 (477)
T ss_pred CcHhhCCHHHHHHHHHHcCcHHHHHH
Confidence 46888999999999999999999653
No 59
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=21.65 E-value=3.3e+02 Score=28.06 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=35.5
Q ss_pred CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccc-ccccccc
Q psy2846 238 KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI-TRIFHPN 286 (392)
Q Consensus 238 dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~-T~IfHPN 286 (392)
....+++.| ||.|...+-+|.|...||..||-+.|. ..-|+|.
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 355677777 699999999999999999999999996 3348884
Done!