Query psy2846
Match_columns 392
No_of_seqs 334 out of 1979
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:23:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ucz_A UBC7, ubiquitin conjuga 100.0 9.2E-40 3.1E-44 294.2 17.4 155 208-380 2-157 (165)
2 3h8k_A Ubiquitin-conjugating e 100.0 1.3E-39 4.3E-44 292.9 17.8 154 209-380 2-156 (164)
3 4gpr_A Ubiquitin-conjugating e 100.0 6.7E-39 2.3E-43 284.9 17.0 142 208-380 2-143 (151)
4 1zdn_A Ubiquitin-conjugating e 100.0 7.8E-39 2.7E-43 286.6 15.1 145 205-380 8-152 (158)
5 1ayz_A UBC2, ubiquitin-conjuga 100.0 9E-39 3.1E-43 289.6 15.6 142 208-380 2-143 (169)
6 2ayv_A Ubiquitin-conjugating e 100.0 1.3E-38 4.4E-43 287.8 16.2 145 205-380 16-160 (166)
7 2awf_A Ubiquitin-conjugating e 100.0 5.7E-39 2E-43 291.5 13.1 155 207-379 14-170 (172)
8 1z2u_A Ubiquitin-conjugating e 100.0 1.6E-38 5.4E-43 282.1 15.5 141 209-380 3-143 (150)
9 2aak_A UBC1, ubiquitin conjuga 100.0 1.6E-38 5.5E-43 282.6 15.6 142 208-380 2-143 (152)
10 2c4o_A Ubiquitin-conjugating e 100.0 2.9E-38 9.8E-43 285.2 17.3 144 206-380 15-158 (165)
11 2c2v_B Ubiquitin-conjugating e 100.0 5.2E-39 1.8E-43 286.7 11.8 140 210-380 5-144 (154)
12 1yh2_A HSPC150 protein similar 100.0 4.6E-38 1.6E-42 284.6 17.4 146 208-380 2-147 (169)
13 3rz3_A Ubiquitin-conjugating e 100.0 2.2E-38 7.4E-43 290.2 15.1 155 207-379 4-165 (183)
14 2r0j_A Ubiquitin carrier prote 100.0 3.2E-38 1.1E-42 280.0 15.6 138 212-380 3-140 (149)
15 3rcz_B SUMO-conjugating enzyme 100.0 3.5E-38 1.2E-42 284.2 15.4 145 207-380 7-156 (163)
16 2e2c_A Ubiquitin conjugating e 100.0 3.1E-38 1.1E-42 282.0 14.6 142 207-380 6-147 (156)
17 1jat_A Ubiquitin-conjugating e 100.0 2.3E-38 7.8E-43 282.6 13.4 140 210-380 5-144 (155)
18 1fxt_A Ubiquitin-conjugating e 100.0 2.3E-38 7.8E-43 280.8 11.8 139 211-380 2-142 (149)
19 2gjd_A Ubiquitin-conjugating e 100.0 9.8E-38 3.3E-42 279.2 15.5 144 208-380 2-150 (157)
20 2bep_A Ubiquitin-conjugating e 100.0 1.7E-37 6E-42 278.0 16.5 143 207-380 5-151 (159)
21 1i7k_A Ubiquitin-conjugating e 100.0 8.7E-38 3E-42 285.7 13.6 142 207-380 27-168 (179)
22 1yrv_A Ubiquitin-conjugating l 100.0 8.7E-38 3E-42 283.2 13.3 144 205-377 18-162 (169)
23 2grr_A Ubiquitin-conjugating e 100.0 2.5E-37 8.5E-42 277.7 15.3 146 206-380 3-153 (161)
24 3bzh_A Ubiquitin-conjugating e 100.0 4.1E-37 1.4E-41 284.5 17.0 142 208-380 46-187 (194)
25 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.4E-37 8.2E-42 285.9 14.8 143 207-380 29-185 (193)
26 3fn1_B NEDD8-conjugating enzym 100.0 4.3E-37 1.5E-41 277.3 15.3 151 205-380 9-160 (167)
27 2pwq_A Ubiquitin conjugating e 100.0 2.1E-37 7.2E-42 290.8 13.6 144 206-380 19-163 (216)
28 3k9o_A Ubiquitin-conjugating e 100.0 5E-37 1.7E-41 284.7 14.9 142 208-380 3-148 (201)
29 1wzv_A Ubiquitin-conjugating e 100.0 6.9E-37 2.4E-41 272.9 14.6 140 210-380 4-144 (155)
30 1y8x_A Ubiquitin-conjugating e 100.0 1.5E-36 5.3E-41 272.5 15.2 140 208-381 4-144 (160)
31 3e46_A Ubiquitin-conjugating e 100.0 4.2E-36 1.4E-40 287.9 16.6 145 205-380 52-200 (253)
32 2y9m_A Ubiquitin-conjugating e 100.0 4.4E-36 1.5E-40 272.4 15.4 145 206-380 2-161 (172)
33 1tte_A Ubiquitin-conjugating e 100.0 8.3E-37 2.9E-41 286.5 10.2 140 210-380 2-143 (215)
34 2nvu_C NEDD8-conjugating enzym 100.0 4.3E-36 1.5E-40 274.6 14.5 141 206-380 22-163 (180)
35 1c4z_D UBCH7, ubiquitin conjug 100.0 3.4E-36 1.2E-40 268.1 10.4 140 210-380 2-142 (154)
36 2onu_A Ubiquitin-conjugating e 100.0 4.1E-36 1.4E-40 267.6 7.7 137 211-380 3-140 (152)
37 3o2u_A NEDD8-conjugating enzym 100.0 5.5E-35 1.9E-39 269.4 14.9 142 206-381 25-173 (190)
38 4ds2_A Ubiquitin-conjugating e 100.0 1.2E-35 4E-40 268.2 9.9 145 207-380 5-164 (167)
39 4ddg_A Ubiquitin-conjugating e 100.0 1.7E-34 5.8E-39 292.5 15.9 141 209-380 2-142 (399)
40 2fo3_A Ubiquitin-conjugating e 100.0 1.2E-34 4.1E-39 250.2 12.3 116 209-340 5-121 (125)
41 2z5d_A Ubiquitin-conjugating e 100.0 4.5E-35 1.6E-39 267.8 9.9 137 210-380 25-162 (179)
42 2a4d_A Ubiquitin-conjugating e 100.0 2.5E-34 8.7E-39 258.6 14.0 130 206-348 21-155 (160)
43 1yf9_A Ubiquitin carrier prote 100.0 8.5E-35 2.9E-39 264.0 9.8 136 210-380 12-149 (171)
44 2q0v_A Ubiquitin-conjugating e 100.0 1.1E-34 3.9E-39 259.7 10.0 127 205-348 16-149 (156)
45 2h2y_A Ubiquitin-conjugating e 100.0 6.5E-34 2.2E-38 249.1 13.9 117 208-340 18-135 (136)
46 2hlw_A Ubiquitin-conjugating e 100.0 1E-33 3.6E-38 256.8 10.1 129 207-348 32-165 (170)
47 3ceg_A Baculoviral IAP repeat- 100.0 2.3E-33 7.7E-38 276.8 12.2 135 206-348 72-217 (323)
48 2a7l_A Hypothetical ubiquitin- 100.0 2.4E-33 8.2E-38 245.9 10.5 108 212-334 24-135 (136)
49 1jat_B Ubiquitin-conjugating e 100.0 2.1E-33 7.1E-38 246.3 8.7 123 209-348 5-134 (138)
50 2f4w_A Ubiquitin-conjugating e 100.0 6.5E-31 2.2E-35 241.6 14.1 121 206-341 10-130 (187)
51 1zuo_A Hypothetical protein LO 100.0 7.7E-31 2.6E-35 241.0 8.0 121 205-340 22-158 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 2.7E-23 9.1E-28 186.8 3.2 105 206-326 28-144 (172)
53 3r3q_A Suppressor protein STP2 99.5 1.1E-14 3.6E-19 131.1 7.8 113 213-342 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.5 7E-15 2.4E-19 129.9 3.7 87 206-298 30-127 (168)
55 1fs1_A SKP2 F-BOX, cyclin A/CD 99.3 6E-13 2.1E-17 97.1 3.7 47 110-159 6-52 (53)
56 2e31_A FBS1, F-box only protei 99.2 2.8E-11 9.7E-16 118.3 6.5 68 111-182 49-120 (297)
57 3v7d_B Cell division control p 99.2 1.8E-11 6.2E-16 119.8 5.1 53 109-164 11-64 (464)
58 3obq_A Tumor susceptibility ge 99.1 4.5E-11 1.5E-15 105.8 6.0 81 237-338 51-140 (146)
59 3l2o_B F-box only protein 4; s 99.1 4E-11 1.4E-15 117.3 5.3 52 111-165 3-54 (312)
60 2ovr_B FBW7, F-BOX/WD repeat p 99.1 8.7E-11 3E-15 115.0 7.6 71 109-182 15-95 (445)
61 1p22_A F-BOX/WD-repeat protein 99.0 6E-11 2E-15 116.3 3.4 53 110-165 8-64 (435)
62 2ast_B S-phase kinase-associat 98.2 3E-07 1E-11 87.2 2.2 46 111-159 7-52 (336)
63 2p1m_B Transport inhibitor res 97.8 8.7E-06 3E-10 82.8 3.5 36 111-146 4-40 (594)
64 3ogk_B Coronatine-insensitive 97.3 7.7E-05 2.6E-09 75.9 2.4 35 113-147 13-48 (592)
65 4hfx_A Transcription elongatio 96.8 0.00058 2E-08 56.3 2.9 65 116-186 13-77 (97)
66 2yz0_A Serine/threonine-protei 92.5 0.55 1.9E-05 39.7 8.8 70 210-280 10-85 (138)
67 2ebm_A RWD domain-containing p 91.8 0.28 9.4E-06 40.9 5.9 68 211-280 11-78 (128)
68 2day_A Ring finger protein 25; 90.2 0.82 2.8E-05 38.0 7.3 67 214-280 12-82 (128)
69 2ebk_A RWD domain-containing p 87.3 1.6 5.5E-05 36.3 7.2 65 214-279 11-78 (128)
70 3zqs_A E3 ubiquitin-protein li 83.5 5.5 0.00019 36.1 9.2 82 214-334 5-86 (186)
71 1ukx_A GCN2, GCN2 EIF2alpha ki 82.2 3.8 0.00013 34.2 7.3 67 212-279 12-85 (137)
72 2daw_A RWD domain containing p 76.0 5.7 0.00019 34.3 6.6 68 209-280 13-98 (154)
73 2dax_A Protein C21ORF6; RWD do 70.2 5.1 0.00018 34.3 4.8 23 258-280 74-96 (152)
No 1
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.2e-40 Score=294.23 Aligned_cols=155 Identities=26% Similarity=0.446 Sum_probs=142.5
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN 286 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN 286 (392)
++.+.+||++|+++|++++++||++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 2 ~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 81 (165)
T 2ucz_A 2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN 81 (165)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence 46889999999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846 287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL 366 (392)
Q Consensus 287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l 366 (392)
|+.+|+||+++|++...+.+..+.+.++|+|+++|++||+| |+++|. +|+.++|+|.++ |++
T Consensus 82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s--i~~ll~-~Pn~~~p~n~~a---------------a~~ 143 (165)
T 2ucz_A 82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS--VMSMLS-EPNIESGANIDA---------------CIL 143 (165)
T ss_dssp BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHH--HHHHHH-SCCGGGCCCHHH---------------HHH
T ss_pred CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HHH
Confidence 99999999999976544555555667899999999999998 999885 899999999776 999
Q ss_pred HHhCHHHHHHHhcC
Q psy2846 367 ISSDQWRYFVLTRF 380 (392)
Q Consensus 367 ~~~d~~~y~~~~r~ 380 (392)
|++|+++|...+|.
T Consensus 144 ~~~~~~~y~~~v~~ 157 (165)
T 2ucz_A 144 WRDNRPEFERQVKL 157 (165)
T ss_dssp HHTTHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHH
Confidence 99999999998874
No 2
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.3e-39 Score=292.88 Aligned_cols=154 Identities=26% Similarity=0.490 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
+.+.+||++|+++|++++++||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 46899999999999999999999998776 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
+.+|+||+++|++...+....+.+.++|+|++||++||++ |+++|. +|+.++|+|.++ |++|
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~--i~~ll~-~pn~~~p~n~~a---------------a~~~ 143 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS--VVSMLA-EPNDESGANVDA---------------SKMW 143 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHH--HHHHHH-SCCCSSCSSHHH---------------HHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHH--HHHHHc-CCCCCCccCHHH---------------HHHH
Confidence 9999999999986555666667778999999999999998 999885 999999999777 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|+..+|.
T Consensus 144 ~~~~~~f~~~~~~ 156 (164)
T 3h8k_A 144 RDDREQFYKIAKQ 156 (164)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHH
Confidence 9999999998874
No 3
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=6.7e-39 Score=284.93 Aligned_cols=142 Identities=32% Similarity=0.661 Sum_probs=135.9
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
++.+.+||++|++++++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
+.+|+||+++|. ++|+|+++|++||++ |+++|. +|+.++|+|.++ |++|
T Consensus 82 ~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~ 130 (151)
T 4gpr_A 82 NKNGVICLDILK-------------DQWSPALTLSRVLLS--ISSLLT-DPNPSDPLDPEV---------------ANVL 130 (151)
T ss_dssp CTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-CCCTTSCSSHHH---------------HHHH
T ss_pred CCCCEEEccccc-------------CCCCCCCcHHHHHHH--HHHHhc-CCCCCCchhHHH---------------HHHH
Confidence 999999999996 789999999999998 999985 999999999776 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 131 ~~d~~~f~~~ar~ 143 (151)
T 4gpr_A 131 RANKKQFEDTARE 143 (151)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHH
Confidence 9999999998874
No 4
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.8e-39 Score=286.62 Aligned_cols=145 Identities=27% Similarity=0.505 Sum_probs=137.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH 284 (392)
..++..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 8 ~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 87 (158)
T 1zdn_A 8 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH 87 (158)
T ss_dssp CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred cccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCccc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846 285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA 364 (392)
Q Consensus 285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A 364 (392)
|||+.+|+||+++|. ++|+|+++|++||++ |+++|. +|+.++|+|.++ |
T Consensus 88 Pnv~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~pn~~~p~n~~a---------------a 136 (158)
T 1zdn_A 88 PNVGANGEICVNVLK-------------RDWTAELGIRHVLLT--IKCLLI-HPNPESALNEEA---------------G 136 (158)
T ss_dssp TTBCTTSBBCHHHHT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCGGGCSSHHH---------------H
T ss_pred CCCCCCCEEehhhcC-------------CCCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------H
Confidence 999999999999996 789999999999998 999885 999999999776 9
Q ss_pred HHHHhCHHHHHHHhcC
Q psy2846 365 DLISSDQWRYFVLTRF 380 (392)
Q Consensus 365 ~l~~~d~~~y~~~~r~ 380 (392)
++|++|+++|...+|.
T Consensus 137 ~~~~~d~~~f~~~a~~ 152 (158)
T 1zdn_A 137 RLLLENYEEYAARARL 152 (158)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHH
Confidence 9999999999998874
No 5
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9e-39 Score=289.57 Aligned_cols=142 Identities=32% Similarity=0.576 Sum_probs=134.8
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||
T Consensus 2 s~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI 81 (169)
T 1ayz_A 2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81 (169)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
+.+|.||+++|. ++|+|+++|.+||+| |+++| ..|+.++|+|.++ |++|
T Consensus 82 ~~~G~ICl~iL~-------------~~WsP~~~i~~vL~s--i~~ll-~~Pn~~~P~n~~a---------------a~~~ 130 (169)
T 1ayz_A 82 YANGEICLDILQ-------------NRWTPTYDVASILTS--IQSLF-NDPNPASPANVEA---------------ATLF 130 (169)
T ss_dssp CTTSBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHH-TCCCCSSCSSHHH---------------HHHH
T ss_pred CCCCeEeehhhc-------------cCCCCcCcHHHHHHH--HHHHH-hCCCCCcHHHHHH---------------HHHH
Confidence 999999999997 789999999999998 99988 4999999999776 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 131 ~~d~~~y~~~~r~ 143 (169)
T 1ayz_A 131 KDHKSQYVKRVKE 143 (169)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHH
Confidence 9999999988774
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-38 Score=287.79 Aligned_cols=145 Identities=37% Similarity=0.644 Sum_probs=135.7
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH 284 (392)
....+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus 16 ~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 95 (166)
T 2ayv_A 16 NLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH 95 (166)
T ss_dssp ---CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred cccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846 285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA 364 (392)
Q Consensus 285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A 364 (392)
|||+.+|+||+++|+ ++|+|+++|++||++ |+++|. +|+.++|+|.++ |
T Consensus 96 PNI~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~sll~-~pn~~~Pln~~a---------------a 144 (166)
T 2ayv_A 96 PNINSQGAICLDILK-------------DQWSPALTISKVLLS--ISSLLT-DPNPDDPLVPEI---------------A 144 (166)
T ss_dssp TTBCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------H
T ss_pred CcCCCCCeEEccccc-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCchhhHHH---------------H
Confidence 999999999999997 789999999999998 999985 999999999776 9
Q ss_pred HHHHhCHHHHHHHhcC
Q psy2846 365 DLISSDQWRYFVLTRF 380 (392)
Q Consensus 365 ~l~~~d~~~y~~~~r~ 380 (392)
++|++|+++|...+|.
T Consensus 145 ~l~~~d~~~f~~~ar~ 160 (166)
T 2ayv_A 145 HLYKSDRMRYDQTARE 160 (166)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHH
Confidence 9999999999988874
No 7
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=5.7e-39 Score=291.53 Aligned_cols=155 Identities=28% Similarity=0.453 Sum_probs=113.2
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP 285 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP 285 (392)
.++.+.+||++|+++|++++++||++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP 93 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP 93 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence 457889999999999999999999999876 6999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846 286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD 365 (392)
Q Consensus 286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~ 365 (392)
||+.+|+||+++|++...+.+..+...++|+|+++|++||++ |+++| .+|+.++|+|.+| |+
T Consensus 94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~s--I~sll-~~Pn~~~p~n~~a---------------a~ 155 (172)
T 2awf_A 94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS--VISML-ADPNGDSPANVDA---------------AK 155 (172)
T ss_dssp TBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHH--HHHHH-SCC---------------------------
T ss_pred CCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHH--HHHHH-HCcCCCCccCHHH---------------HH
Confidence 999999999999985444444445567899999999999998 99988 5899999999877 99
Q ss_pred HHHhCHH-HHHHHhc
Q psy2846 366 LISSDQW-RYFVLTR 379 (392)
Q Consensus 366 l~~~d~~-~y~~~~r 379 (392)
+|++|++ +|+..+|
T Consensus 156 ~~~~d~~~~f~~~vr 170 (172)
T 2awf_A 156 EWREDRNGEFKRKVA 170 (172)
T ss_dssp ---------------
T ss_pred HHHHCcHHHHHHHHH
Confidence 9999999 9998776
No 8
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.6e-38 Score=282.11 Aligned_cols=141 Identities=38% Similarity=0.668 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288 (392)
Q Consensus 209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~ 288 (392)
..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
.+|+||+++|+ ++|+|+++|.+||++ |+++|. +|+.++|+|.++ |++|+
T Consensus 83 ~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~pn~~~p~n~~a---------------a~~~~ 131 (150)
T 1z2u_A 83 SNGSICLDILR-------------SQWSPALTISKVLLS--ICSLLC-DPNPDDPLVPEI---------------ARIYK 131 (150)
T ss_dssp TTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHHH
T ss_pred CCCeEeecccc-------------CCCCCCCCHHHHHHH--HHHHhh-CCCCCCccCHHH---------------HHHHH
Confidence 99999999997 789999999999998 999985 999999999776 99999
Q ss_pred hCHHHHHHHhcC
Q psy2846 369 SDQWRYFVLTRF 380 (392)
Q Consensus 369 ~d~~~y~~~~r~ 380 (392)
+|+++|...+|.
T Consensus 132 ~~~~~f~~~~~~ 143 (150)
T 1z2u_A 132 TDRERYNQLARE 143 (150)
T ss_dssp HCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 9
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.6e-38 Score=282.61 Aligned_cols=142 Identities=32% Similarity=0.588 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 s~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (152)
T 2aak_A 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81 (152)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
+.+|+||+++|. ++|+|+++|.+||++ |+++| .+|+.++|+|.++ |++|
T Consensus 82 ~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll-~~p~~~~p~n~~a---------------a~~~ 130 (152)
T 2aak_A 82 YADGSICLDILQ-------------NQWSPIYDVAAILTS--IQSLL-CDPNPNSPANSEA---------------ARMY 130 (152)
T ss_dssp CTTSBBCCGGGT-------------TSCCTTCCHHHHHHH--HHHHH-TSCCTTSCSSHHH---------------HHHH
T ss_pred CCCCEEechhhc-------------CCCCCCCcHHHHHHH--HHHHH-hCCCCCccccHHH---------------HHHH
Confidence 999999999997 789999999999998 99988 4999999999776 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 131 ~~~~~~y~~~~~~ 143 (152)
T 2aak_A 131 SESKREYNRRVRD 143 (152)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHH
Confidence 9999999998874
No 10
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=2.9e-38 Score=285.16 Aligned_cols=144 Identities=36% Similarity=0.655 Sum_probs=136.4
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP 285 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP 285 (392)
...+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HP 94 (165)
T 2c4o_A 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP 94 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846 286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD 365 (392)
Q Consensus 286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~ 365 (392)
||+.+|+||+++|+ ++|+|+++|++||++ |+++|. +|+.++|+|.++ |+
T Consensus 95 nV~~~G~ICl~iL~-------------~~W~P~~ti~~vL~s--i~~ll~-~pn~~~P~n~~a---------------a~ 143 (165)
T 2c4o_A 95 NINSNGSICLDILR-------------SQWSPALTISKVLLS--ICSLLC-DPNPDDPLVPEI---------------AR 143 (165)
T ss_dssp TBCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------HH
T ss_pred cCCCCCeEeehhhc-------------CCCCCcCcHHHHHHH--HHHHHh-CCCCCccccHHH---------------HH
Confidence 99999999999997 789999999999998 999885 999999999776 99
Q ss_pred HHHhCHHHHHHHhcC
Q psy2846 366 LISSDQWRYFVLTRF 380 (392)
Q Consensus 366 l~~~d~~~y~~~~r~ 380 (392)
+|++|+++|...+|.
T Consensus 144 ~~~~d~~~y~~~ar~ 158 (165)
T 2c4o_A 144 IYKTDREKYNRIARE 158 (165)
T ss_dssp HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 11
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-39 Score=286.67 Aligned_cols=140 Identities=31% Similarity=0.540 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR 289 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~ 289 (392)
.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 84 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846 290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS 369 (392)
Q Consensus 290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~ 369 (392)
+|+||+++|+ ++|+|+++|++||++ |+++| .+|+.++|+|.++ |++|++
T Consensus 85 ~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll-~~pn~~~p~n~~a---------------a~~~~~ 133 (154)
T 2c2v_B 85 LGRICLDILK-------------DKWSPALQIRTVLLS--IQALL-SAPNPDDPLANDV---------------AEQWKT 133 (154)
T ss_dssp TCBBCCHHHH-------------TSCCTTCCHHHHHHH--HHHHT-TSCCCCCC--CHH---------------HHHHHH
T ss_pred CCeEEchhcc-------------CCCCCCCcHHHHHHH--HHHHH-hCCCCCCcccHHH---------------HHHHHH
Confidence 9999999996 789999999999998 99988 5999999999877 999999
Q ss_pred CHHHHHHHhcC
Q psy2846 370 DQWRYFVLTRF 380 (392)
Q Consensus 370 d~~~y~~~~r~ 380 (392)
|+++|...+|.
T Consensus 134 d~~~f~~~ar~ 144 (154)
T 2c2v_B 134 NEAQAIETARA 144 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999988874
No 12
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.6e-38 Score=284.60 Aligned_cols=146 Identities=27% Similarity=0.441 Sum_probs=136.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
+.+|+||+++|+.. ..++|+|+++|++||+| |+++|. +|+.++|+|.++ |++|
T Consensus 82 ~~~G~iCl~iL~~~---------~~~~W~p~~~i~~vL~s--i~~ll~-~p~~~~p~n~~a---------------a~~~ 134 (169)
T 1yh2_A 82 DSAGRICLDVLKLP---------PKGAWRPSLNIATVLTS--IQLLMS-EPNPDDPLMADI---------------SSEF 134 (169)
T ss_dssp CTTCBBCCGGGSCT---------TTSCCCTTSCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHH
T ss_pred CcCCeEecccccCC---------cccCCCCCCcHHHHHHH--HHHHHh-CCCCcchHhHHH---------------HHHH
Confidence 99999999999721 13789999999999998 999885 899999999776 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 135 ~~~~~~y~~~~r~ 147 (169)
T 1yh2_A 135 KYNKPAFLKNARQ 147 (169)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH
Confidence 9999999988764
No 13
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.2e-38 Score=290.23 Aligned_cols=155 Identities=22% Similarity=0.450 Sum_probs=130.7
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceee-eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQ-PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP 285 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~-p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP 285 (392)
+++.+.+||++||++|++++++||++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 4 ~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 83 (183)
T 3rz3_A 4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP 83 (183)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccC
Confidence 346789999999999999999999999 6778999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846 286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD 365 (392)
Q Consensus 286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~ 365 (392)
||+.+|+||+++|++..++.+..+...++|+|+++|++||++ |+++| .+|+.++|+|.+| |+
T Consensus 84 nV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s--i~~ll-~~Pn~~~p~n~~a---------------a~ 145 (183)
T 3rz3_A 84 NIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS--VISLL-NEPNTFSPANVDA---------------SV 145 (183)
T ss_dssp TBCTTSBBCCTTC--------------CCCCTTCCHHHHHHH--HHHHH-HSCCCSSCSSHHH---------------HH
T ss_pred CCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHH--HHHHH-hCCCCCCcccHHH---------------HH
Confidence 999999999999986555555555556899999999999998 99988 4999999999877 88
Q ss_pred HHHh------CHHHHHHHhc
Q psy2846 366 LISS------DQWRYFVLTR 379 (392)
Q Consensus 366 l~~~------d~~~y~~~~r 379 (392)
+|++ |+++|...+|
T Consensus 146 ~~~~~~~~~~~~~~y~~~v~ 165 (183)
T 3rz3_A 146 MYRKWKESKGKDREYTDIIR 165 (183)
T ss_dssp HHHHHHHTTTCCCHHHHHHH
T ss_pred HHHhcccccccHHHHHHHHH
Confidence 8887 6778876665
No 14
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=3.2e-38 Score=280.01 Aligned_cols=138 Identities=33% Similarity=0.624 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCC
Q psy2846 212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG 291 (392)
Q Consensus 212 ~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G 291 (392)
.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 82 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 82 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCH
Q psy2846 292 DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQ 371 (392)
Q Consensus 292 ~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~ 371 (392)
+||+++|+ ++|+|+++|++||++ |+++|. +|+.++|+|.++ |++|++|+
T Consensus 83 ~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~~~~ 131 (149)
T 2r0j_A 83 RICLDILK-------------DKWSPALQIRTVLLS--IQALLS-SPEPDDPLDSKV---------------AEHFKQDK 131 (149)
T ss_dssp BBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHHH-SCCTTSCSSCHH---------------HHHHHHCH
T ss_pred EEechhcC-------------CCCCCCCcHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HHHHHHCH
Confidence 99999997 789999999999998 999985 999999999877 99999999
Q ss_pred HHHHHHhcC
Q psy2846 372 WRYFVLTRF 380 (392)
Q Consensus 372 ~~y~~~~r~ 380 (392)
++|...+|.
T Consensus 132 ~~f~~~~~~ 140 (149)
T 2r0j_A 132 NDAEHVARQ 140 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988874
No 15
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-38 Score=284.20 Aligned_cols=145 Identities=27% Similarity=0.505 Sum_probs=135.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceeeeCCC-----CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~-----dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~ 281 (392)
.+..+.+||++|+++|++++++||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3578999999999999999999999999765 89999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHH
Q psy2846 282 IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFT 361 (392)
Q Consensus 282 IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~ 361 (392)
||||||+.+|+||+++|+. .++|+|+++|++||++ |+++| .+|+.++|+|.++
T Consensus 87 i~HPnV~~~G~iCl~iL~~-----------~~~W~p~~ti~~vL~~--i~~ll-~~P~~~~p~n~~a------------- 139 (163)
T 3rcz_B 87 LFHPNVYPSGTVCLSILNE-----------EEGWKPAITIKQILLG--IQDLL-DDPNIASPAQTEA------------- 139 (163)
T ss_dssp CCSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHH--HHHHH-TSCCTTSCSCHHH-------------
T ss_pred CccCCCCCCCcEeccccCC-----------CCCcCCcCcHHHHHHH--HHHHH-hCCCCCCccCHHH-------------
Confidence 9999999999999999972 2579999999999998 99999 5999999999777
Q ss_pred HHHHHHHhCHHHHHHHhcC
Q psy2846 362 IIADLISSDQWRYFVLTRF 380 (392)
Q Consensus 362 ~~A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 140 --a~~~~~d~~~y~~~~r~ 156 (163)
T 3rcz_B 140 --YTMFKKDKVEYEKRVRA 156 (163)
T ss_dssp --HHHHHHCHHHHHHHHHH
T ss_pred --HHHHHHCHHHHHHHHHH
Confidence 99999999999998874
No 16
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-38 Score=282.00 Aligned_cols=142 Identities=30% Similarity=0.510 Sum_probs=134.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN 286 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN 286 (392)
+++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 85 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN 85 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846 287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL 366 (392)
Q Consensus 287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l 366 (392)
|+.+|.||+++|. ++|+|+++|.+||++ |+++| .+|+.++|+|.++ |++
T Consensus 86 v~~~G~iCl~iL~-------------~~W~p~~~i~~vL~s--i~~ll-~~pn~~~p~n~~a---------------a~~ 134 (156)
T 2e2c_A 86 VDQSGNICLDILK-------------ENWTASYDVRTILLS--LQSLL-GEPNNASPLNAQA---------------ADM 134 (156)
T ss_dssp BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHT-TSCCCSSCSCHHH---------------HHH
T ss_pred CccCceEECcccc-------------ccCCCCCcHHHHHHH--HHHHH-hCCCCCCHHHHHH---------------HHH
Confidence 9999999999997 789999999999998 99988 5999999999776 999
Q ss_pred HHhCHHHHHHHhcC
Q psy2846 367 ISSDQWRYFVLTRF 380 (392)
Q Consensus 367 ~~~d~~~y~~~~r~ 380 (392)
| +|+++|...+|.
T Consensus 135 ~-~d~~~y~~~~~~ 147 (156)
T 2e2c_A 135 W-SNQTEYKKVLHE 147 (156)
T ss_dssp T-TCHHHHHHHHHH
T ss_pred h-cCHHHHHHHHHH
Confidence 9 899999988774
No 17
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=2.3e-38 Score=282.64 Aligned_cols=140 Identities=32% Similarity=0.530 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR 289 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~ 289 (392)
.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846 290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS 369 (392)
Q Consensus 290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~ 369 (392)
+|+||+++|. ++|+|+++|.+||++ |+++|. +|+.++|+|.++ |++|++
T Consensus 85 ~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~~ 133 (155)
T 1jat_A 85 LGRICLDVLK-------------TNWSPALQIRTVLLS--IQALLA-SPNPNDPLANDV---------------AEDWIK 133 (155)
T ss_dssp TCCBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSTTCCTT---------------HHHHHH
T ss_pred CCEEEchhhc-------------cCCCCCCCHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHHHH
Confidence 9999999996 789999999999998 999885 899999999988 999999
Q ss_pred CHHHHHHHhcC
Q psy2846 370 DQWRYFVLTRF 380 (392)
Q Consensus 370 d~~~y~~~~r~ 380 (392)
|+++|...+|.
T Consensus 134 ~~~~f~~~~r~ 144 (155)
T 1jat_A 134 NEQGAKAKARE 144 (155)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998874
No 18
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2.3e-38 Score=280.77 Aligned_cols=139 Identities=31% Similarity=0.531 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR 289 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~ 289 (392)
+.+||++|+++|++++++||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 579999999999999999999999887 9999999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 290 -HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 290 -~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
+|.||+++|. ++|+|+++|++||+| |+++|. .|+.++|+|.++ |++|+
T Consensus 82 ~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~ 130 (149)
T 1fxt_A 82 VTGAICLDILK-------------NAWSPVITLKSALIS--LQALLQ-SPEPNDPQDAEV---------------AQHYL 130 (149)
T ss_dssp SSCCBCCHHHH-------------TSCCTTCCHHHHHHH--HHHHHH-SCCSSSCSSHHH---------------HHHHH
T ss_pred CCCeEeCCcCC-------------CCCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHHH
Confidence 9999999996 789999999999998 999885 899999999776 99999
Q ss_pred hCHHHHHHHhcC
Q psy2846 369 SDQWRYFVLTRF 380 (392)
Q Consensus 369 ~d~~~y~~~~r~ 380 (392)
+|+++|...+|.
T Consensus 131 ~d~~~f~~~a~~ 142 (149)
T 1fxt_A 131 RDRESFNKTAAL 142 (149)
T ss_dssp HCSSHHHHHHHH
T ss_pred HCHHHHHHHHHH
Confidence 999999988874
No 19
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=9.8e-38 Score=279.23 Aligned_cols=144 Identities=26% Similarity=0.453 Sum_probs=133.5
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCC-----CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-----NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI 282 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-----~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I 282 (392)
++.+.+||++|+++|++++++||++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 2 s~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 81 (157)
T 2gjd_A 2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGF 81 (157)
T ss_dssp -CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTC
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCC
Confidence 35789999999999999999999999864 4899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHH
Q psy2846 283 FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTI 362 (392)
Q Consensus 283 fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~ 362 (392)
|||||+.+|+||+++|+. .++|+|+++|++||++ |+++| .+|+.++|+|.++
T Consensus 82 ~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~--i~~ll-~~p~~~~p~n~~a-------------- 133 (157)
T 2gjd_A 82 YHPNVYPSGTICLSILNE-----------DQDWRPAITLKQIVLG--VQDLL-DSPNPNSPAQEPA-------------- 133 (157)
T ss_dssp CCTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHH--HHHHH-TSCCTTCCCCHHH--------------
T ss_pred ccCCCCCCCcEeeecccC-----------CCCCCCCCcHHHHHHH--HHHHH-hCCCCCCccCHHH--------------
Confidence 999999999999999972 2489999999999998 99998 5899999999777
Q ss_pred HHHHHHhCHHHHHHHhcC
Q psy2846 363 IADLISSDQWRYFVLTRF 380 (392)
Q Consensus 363 ~A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 134 -a~~~~~~~~~y~~~~~~ 150 (157)
T 2gjd_A 134 -WRSFSRNKAEYDKKVLL 150 (157)
T ss_dssp -HHHHHHCHHHHHHHHHH
T ss_pred -HHHHHHCHHHHHHHHHH
Confidence 99999999999998874
No 20
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.7e-37 Score=277.99 Aligned_cols=143 Identities=28% Similarity=0.535 Sum_probs=134.1
Q ss_pred ccHHHHHHHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF 283 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If 283 (392)
|++.+.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 4567899999999999985 5889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHH
Q psy2846 284 HPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTI 362 (392)
Q Consensus 284 HPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~ 362 (392)
||||+ .+|+||+++|+ ++|+|+++|.+||++ |+++|. .|+.++|+|.++
T Consensus 85 HPni~~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a-------------- 134 (159)
T 2bep_A 85 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLS--LQALLA-AAEPDDPQDAVV-------------- 134 (159)
T ss_dssp BTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH--------------
T ss_pred ccCCCCCCCEEeChhhh-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH--------------
Confidence 99999 59999999997 789999999999998 999985 999999999776
Q ss_pred HHHHHHhCHHHHHHHhcC
Q psy2846 363 IADLISSDQWRYFVLTRF 380 (392)
Q Consensus 363 ~A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 135 -a~~~~~~~~~f~~~a~~ 151 (159)
T 2bep_A 135 -ANQYKQNPEMFKQTARL 151 (159)
T ss_dssp -HHHHHHCHHHHHHHHHH
T ss_pred -HHHHHHCHHHHHHHHHH
Confidence 99999999999998874
No 21
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.7e-38 Score=285.70 Aligned_cols=142 Identities=27% Similarity=0.475 Sum_probs=132.8
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN 286 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN 286 (392)
+++.+.+||++||++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846 287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL 366 (392)
Q Consensus 287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l 366 (392)
|+.+|+||+++|. ++|+|+++|++||++ |+++|. +|+.++|+|.++ |++
T Consensus 107 V~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~sll~-~Pn~~~Pln~~a---------------a~l 155 (179)
T 1i7k_A 107 VDTQGNISLDILK-------------EKWSALYDVRTILLS--IQSLLG-EPNIDSPLNTHA---------------AEL 155 (179)
T ss_dssp BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHH
T ss_pred cccCCeEEcccCc-------------CcCCCCCCHHHHHHH--HHHHHh-CCCCcchhhHHH---------------HHH
Confidence 9999999999997 789999999999998 999985 999999999776 999
Q ss_pred HHhCHHHHHHHhcC
Q psy2846 367 ISSDQWRYFVLTRF 380 (392)
Q Consensus 367 ~~~d~~~y~~~~r~ 380 (392)
| +|+++|...+|-
T Consensus 156 ~-~d~~~f~~~v~~ 168 (179)
T 1i7k_A 156 W-KNPTAFKKYLQE 168 (179)
T ss_dssp T-TSHHHHHHHHHH
T ss_pred h-hCHHHHHHHHHH
Confidence 9 999999988763
No 22
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.7e-38 Score=283.21 Aligned_cols=144 Identities=28% Similarity=0.461 Sum_probs=134.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH 284 (392)
..|++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus 18 ~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 97 (169)
T 1yrv_A 18 GSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH 97 (169)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred CccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHH
Q psy2846 285 PNV-SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTII 363 (392)
Q Consensus 285 PNV-~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~ 363 (392)
||| +.+|+||+++|++ .++|+|+++|++||++ |+++| .+|+.++|+|.+|
T Consensus 98 PNI~~~~G~ICL~iL~~-----------~~~WsP~~ti~~vL~s--I~sll-~~Pn~~~Pln~ea--------------- 148 (169)
T 1yrv_A 98 PNVDPHTGQPCIDFLDN-----------PEKWNTNYTLSSILLA--LQVML-SNPVLENPVNLEA--------------- 148 (169)
T ss_dssp TTBCTTTCCBCCHHHHC-----------GGGCCTTCCHHHHHHH--HHHHH-TSCCTTSCSCHHH---------------
T ss_pred CcccCCCCeEeehhhcC-----------CcCCCCcCCHHHHHHH--HHHHH-hCCCCCCchhHHH---------------
Confidence 999 7999999999962 2689999999999998 99988 4999999999776
Q ss_pred HHHHHhCHHHHHHH
Q psy2846 364 ADLISSDQWRYFVL 377 (392)
Q Consensus 364 A~l~~~d~~~y~~~ 377 (392)
|++|++|+++|...
T Consensus 149 a~l~~~d~~~y~~~ 162 (169)
T 1yrv_A 149 ARILVKDESLYRTI 162 (169)
T ss_dssp HHHHHSCHHHHHHH
T ss_pred HHHHHHCHHHHHHH
Confidence 99999999999865
No 23
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=2.5e-37 Score=277.66 Aligned_cols=146 Identities=26% Similarity=0.453 Sum_probs=135.0
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCC-----CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLD-----NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT 280 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-----~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T 280 (392)
.|++.+.+||++|+++|++++++||.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 82 (161)
T 2grr_A 3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP 82 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence 3567899999999999999999999998863 58999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhH
Q psy2846 281 RIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWF 360 (392)
Q Consensus 281 ~IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~ 360 (392)
+||||||+.+|.||+++|+. .++|+|+++|++||++ |+++|. +|+.++|+|.++
T Consensus 83 ~i~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a------------ 136 (161)
T 2grr_A 83 PLFHPNVYPSGTVCLSILEE-----------DKDWRPAITIKQILLG--IQELLN-EPNIQSPAQAEA------------ 136 (161)
T ss_dssp CCCSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH------------
T ss_pred CcccCCCCCCCeEeehhcCC-----------CCCcCCCCcHHHHHHH--HHHHHh-CCCCCCccCHHH------------
Confidence 99999999999999999972 2589999999999998 999885 899999999777
Q ss_pred HHHHHHHHhCHHHHHHHhcC
Q psy2846 361 TIIADLISSDQWRYFVLTRF 380 (392)
Q Consensus 361 ~~~A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 137 ---a~~~~~~~~~y~~~~~~ 153 (161)
T 2grr_A 137 ---YTIYCQNRVEYEKRVRA 153 (161)
T ss_dssp ---HHHHHHCHHHHHHHHHH
T ss_pred ---HHHHHHCHHHHHHHHHH
Confidence 99999999999998874
No 24
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=4.1e-37 Score=284.47 Aligned_cols=142 Identities=32% Similarity=0.509 Sum_probs=135.3
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV 287 (392)
.+.+.+||++||++|++++++||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||
T Consensus 46 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 125 (194)
T 3bzh_A 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI 125 (194)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred ccHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
+.+|.|||++|. ++|+|+++|.+||++ |+++|. .|+.++|+|.++ |++|
T Consensus 126 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~~ll~-~pnp~~Pln~~a---------------a~l~ 174 (194)
T 3bzh_A 126 NSQGVICLDILK-------------DNWSPALTISKVLLS--ICSLLT-DCNPADPLVGSI---------------ATQY 174 (194)
T ss_dssp CTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHH
T ss_pred CCCCceechhhh-------------ccCCCcCcHHHHHHH--HHHHHh-CCCCccchhHHH---------------HHHH
Confidence 999999999997 789999999999998 999985 899999999776 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 175 ~~d~~~f~~~ar~ 187 (194)
T 3bzh_A 175 MTNRAEHDRMARQ 187 (194)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHH
Confidence 9999999998874
No 25
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-37 Score=285.88 Aligned_cols=143 Identities=32% Similarity=0.570 Sum_probs=130.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCC-------------CCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCC
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPP-------------DGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p-------------~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~P 273 (392)
....+.+||++|+++|+++++ .||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++|
T Consensus 29 ~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P 108 (193)
T 2f4z_A 29 GTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 108 (193)
T ss_dssp ---CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence 345688999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred CcCcccccccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhh
Q psy2846 274 PKVKFITRIFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSV 352 (392)
Q Consensus 274 P~V~F~T~IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~ 352 (392)
|+|+|.|+||||||+ .+|.|||++|+ ++|+|+++|++||++ |+++|. .|+.++|+|.++
T Consensus 109 P~V~F~T~i~HPNI~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~sll~-~pnp~~P~n~~a---- 168 (193)
T 2f4z_A 109 PKMKFVTKIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLS--IQAMLA-DPVPTDPQDAEV---- 168 (193)
T ss_dssp CEEEESSCCCBTTBCTTTCBBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHHH-SCCTTSCSCHHH----
T ss_pred CeEEEecCCccCCCcCCCCEEECcccc-------------ccCCCCCCHHHHHHH--HHHHHh-CCCCCCcccHHH----
Confidence 999999999999999 69999999997 689999999999998 999985 899999999776
Q ss_pred hhhhhhhHHHHHHHHHhCHHHHHHHhcC
Q psy2846 353 SRACTRWFTIIADLISSDQWRYFVLTRF 380 (392)
Q Consensus 353 ~~~~~~w~~~~A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 169 -----------a~l~~~d~~~f~~~ar~ 185 (193)
T 2f4z_A 169 -----------AKMMIENHPLFVQTAKL 185 (193)
T ss_dssp -----------HHHHHHCHHHHHHHHHH
T ss_pred -----------HHHHHHCHHHHHHHHHH
Confidence 99999999999998874
No 26
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.3e-37 Score=277.34 Aligned_cols=151 Identities=23% Similarity=0.324 Sum_probs=136.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCceeeeC-CCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF 283 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~-~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If 283 (392)
....+.+.+||++||++|++++++||++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 9 ~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (167)
T 3fn1_B 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW 87 (167)
T ss_dssp CCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred ccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence 4667899999999999999999999999864 57899999999 899999999999999999999999999999999999
Q ss_pred cccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHH
Q psy2846 284 HPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTII 363 (392)
Q Consensus 284 HPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~ 363 (392)
||||+.+|+||+++|+.. +...++|+|+++|++||++ |+++|...|+.++|+|.++
T Consensus 88 HPnv~~~G~iCl~iL~~~-------~~~~~~W~p~~~i~~vl~~--i~~ll~~~pn~~~p~n~ea--------------- 143 (167)
T 3fn1_B 88 HPNITETGEICLSLLREH-------SIDGTGWAPTRTLKDVVWG--LNSLFTDLLNFDDPLNIEA--------------- 143 (167)
T ss_dssp CSSBCTTCCBCCGGGSBC-------SSSTTSBCTTCCHHHHHHH--HHHTTTTTCCSSSCSCHHH---------------
T ss_pred cCCCCCCCEEechhhccC-------CCCCCCCCCcCcHHHHHHH--HHHHHcCCCCCCcchhHHH---------------
Confidence 999999999999999732 2345789999999999998 9998863379999999776
Q ss_pred HHHHHhCHHHHHHHhcC
Q psy2846 364 ADLISSDQWRYFVLTRF 380 (392)
Q Consensus 364 A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 144 a~~~~~~~~~f~~~~r~ 160 (167)
T 3fn1_B 144 AEHHLRDKEDFRNKVDD 160 (167)
T ss_dssp HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHH
Confidence 99999999999998874
No 27
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=2.1e-37 Score=290.79 Aligned_cols=144 Identities=31% Similarity=0.568 Sum_probs=135.6
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP 285 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP 285 (392)
...+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP 98 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHP 98 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846 286 NVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA 364 (392)
Q Consensus 286 NV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A 364 (392)
||+ .+|.|||++|+ ++|+|+++|.+||+| |+++|. .|+.++|+|.++ |
T Consensus 99 NI~~~~G~ICL~iL~-------------~~WsP~~ti~~VL~s--I~sLL~-~Pnp~dPln~ea---------------a 147 (216)
T 2pwq_A 99 NISSQTGAICLDVLK-------------NEWSPALTIRTALLS--IQALLS-DPQPDDPQDAEV---------------A 147 (216)
T ss_dssp TBCTTTCBBCCHHHH-------------HHCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------H
T ss_pred CCcCCCCEEEchhhc-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------H
Confidence 999 59999999997 679999999999998 999885 899999999766 9
Q ss_pred HHHHhCHHHHHHHhcC
Q psy2846 365 DLISSDQWRYFVLTRF 380 (392)
Q Consensus 365 ~l~~~d~~~y~~~~r~ 380 (392)
++|++|+++|...+|.
T Consensus 148 ~~~~~d~~~f~~~ar~ 163 (216)
T 2pwq_A 148 KMYKENHALFVKTASV 163 (216)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHH
Confidence 9999999999988874
No 28
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=5e-37 Score=284.74 Aligned_cols=142 Identities=28% Similarity=0.546 Sum_probs=132.6
Q ss_pred cHHHHHHHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH 284 (392)
++.+.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 82 (201)
T 3k9o_A 3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 82 (201)
T ss_dssp -CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCccc
Confidence 356799999999999987 37899999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHH
Q psy2846 285 PNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTII 363 (392)
Q Consensus 285 PNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~ 363 (392)
|||+ .+|.||+++|. ++|+|+++|++||+| |+++|. .|+.++|+|.++
T Consensus 83 Pnv~~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~p~p~~p~n~~a--------------- 131 (201)
T 3k9o_A 83 PNISSVTGAICLDILK-------------DQWAAAMTLRTVLLS--LQALLA-AAEPDDPQDAVV--------------- 131 (201)
T ss_dssp TTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------
T ss_pred CCCcCCCCeeeCcccc-------------cCCCCCCCHHHHHHH--HHHHhc-CCCCCCcccHHH---------------
Confidence 9999 59999999996 799999999999998 999985 999999999776
Q ss_pred HHHHHhCHHHHHHHhcC
Q psy2846 364 ADLISSDQWRYFVLTRF 380 (392)
Q Consensus 364 A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 132 a~~~~~~~~~f~~~a~~ 148 (201)
T 3k9o_A 132 ANQYKQNPEMFKQTARL 148 (201)
T ss_dssp HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHH
Confidence 99999999999988873
No 29
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=6.9e-37 Score=272.89 Aligned_cols=140 Identities=29% Similarity=0.503 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCcee-eeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQA-QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v-~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~ 288 (392)
.+.+||++|+++|++++++||++ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 46899999999999999999999 788899999999999 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
.+|.||+++|+ .++|+|+++|.+||++ |+++|. +|+.++|+|.++ |++|+
T Consensus 83 ~~G~iCl~iL~------------~~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~ 132 (155)
T 1wzv_A 83 ENGQICLPIIS------------SENWKPCTKTCQVLEA--LNVLVN-RPNIREPLRMDL---------------ADLLT 132 (155)
T ss_dssp TTCBCCCGGGC------------TTTCCTTCCHHHHHHH--HHHHHH-SCCSSSCSSHHH---------------HHHHH
T ss_pred CCCeEeecCCC------------ccCCCCCCcHHHHHHH--HHHHHh-CCCCCchHHHHH---------------HHHHH
Confidence 99999999994 2789999999999998 999885 899999999776 99999
Q ss_pred hCHHHHHHHhcC
Q psy2846 369 SDQWRYFVLTRF 380 (392)
Q Consensus 369 ~d~~~y~~~~r~ 380 (392)
+|+++|...+|.
T Consensus 133 ~~~~~y~~~~r~ 144 (155)
T 1wzv_A 133 QNPELFRKNAEE 144 (155)
T ss_dssp HCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
No 30
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-36 Score=272.49 Aligned_cols=140 Identities=21% Similarity=0.409 Sum_probs=131.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceee-eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQ-PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN 286 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~-p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN 286 (392)
.+.+.+||++|+++| ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (160)
T 1y8x_A 4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 80 (160)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence 357899999999999 578899998 7889999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846 287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL 366 (392)
Q Consensus 287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l 366 (392)
|+.+|.||+++|+ ++|+|+++|++||++ |+++|. +|+.++|+|.++ |++
T Consensus 81 v~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~Pn~~~p~n~~a---------------a~~ 129 (160)
T 1y8x_A 81 IDLEGNVCLNILR-------------EDWKPVLTINSIIYG--LQYLFL-EPNPEDPLNKEA---------------AEV 129 (160)
T ss_dssp BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCCSSCSCHHH---------------HHH
T ss_pred CCCCCeEEcccch-------------hhccCCCCHHHHHHH--HHHHHh-CCCCCCccCHHH---------------HHH
Confidence 9999999999997 789999999999998 999885 899999999776 999
Q ss_pred HHhCHHHHHHHhcCC
Q psy2846 367 ISSDQWRYFVLTRFP 381 (392)
Q Consensus 367 ~~~d~~~y~~~~r~~ 381 (392)
|++|+++|...+|.-
T Consensus 130 ~~~~~~~f~~~v~~~ 144 (160)
T 1y8x_A 130 LQNNRRLFEQNVQRS 144 (160)
T ss_dssp HHSCHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHH
Confidence 999999999998853
No 31
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=4.2e-36 Score=287.94 Aligned_cols=145 Identities=28% Similarity=0.528 Sum_probs=136.1
Q ss_pred ccccHHHHHHHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~ 281 (392)
..+++.+.+||++||++|+++ ++.||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus 52 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence 356789999999999999987 47899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhH
Q psy2846 282 IFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWF 360 (392)
Q Consensus 282 IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~ 360 (392)
||||||+ .+|.||+++|. ++|+|+++|++||++ |+++|. .|+.++|+|.++
T Consensus 132 i~HPNV~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~~ll~-~pnp~~Pln~ea------------ 183 (253)
T 3e46_A 132 IWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLS--LQALLA-AAEPDDPQDAVV------------ 183 (253)
T ss_dssp CCBTTBCTTTCBBCCGGGT-------------TCCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH------------
T ss_pred CccCCccCCCCeeeccccc-------------CCCCCCCCHHHHHHH--HHHHhc-CCCCCChhhHHH------------
Confidence 9999999 59999999996 799999999999998 999985 999999999776
Q ss_pred HHHHHHHHhCHHHHHHHhcC
Q psy2846 361 TIIADLISSDQWRYFVLTRF 380 (392)
Q Consensus 361 ~~~A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|...+|.
T Consensus 184 ---a~l~~~d~~~f~~~ar~ 200 (253)
T 3e46_A 184 ---ANQYKQNPEMFKQTARL 200 (253)
T ss_dssp ---HHHHHHCHHHHHHHHHH
T ss_pred ---HHHHHHCHHHHHHHHHH
Confidence 99999999999998873
No 32
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=4.4e-36 Score=272.44 Aligned_cols=145 Identities=28% Similarity=0.475 Sum_probs=130.7
Q ss_pred cccHHHHHHHHHHHHHhhc-C-C------CC---Cceeee-CCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCC
Q psy2846 206 EDNTWRHFRLRKEYNDIKL-D-P------PD---GIQAQP-LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k-~-~------p~---gI~v~p-~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~P 273 (392)
.|++.+.+||++||++|++ . + +. ++.+.+ .++|+++|+++|.||++|||+||.|+|+|.||++||++|
T Consensus 2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P 81 (172)
T 2y9m_A 2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81 (172)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence 3457899999999999998 4 3 33 467778 778999999999999999999999999999999999999
Q ss_pred CcCcccc-cccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhh
Q psy2846 274 PKVKFIT-RIFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCS 351 (392)
Q Consensus 274 P~V~F~T-~IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~ 351 (392)
|+|+|.| +||||||+ .+|+||+++|+ .++|+|+++|++||++ |+++|. +|+.++|+|.++
T Consensus 82 P~v~f~t~~i~HPni~~~~G~iCl~iL~------------~~~W~p~~~i~~vL~s--i~~ll~-~p~~~~p~n~~a--- 143 (172)
T 2y9m_A 82 PKISFMQNNILHCNVKSATGEICLNILK------------PEEWTPVWDLLHCVHA--VWRLLR-EPVCDSPLDVDI--- 143 (172)
T ss_dssp CEEEECTTSCCCTTEETTTTEECCGGGS------------TTTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---
T ss_pred CEEEEeeCCeecCCCcCCCCEEeccccC------------CCCCCCcCcHHHHHHH--HHHHHh-CCCCCCccCHHH---
Confidence 9999999 99999995 89999999996 4789999999999998 999885 999999999776
Q ss_pred hhhhhhhhHHHHHHHHHh-CHHHHHHHhcC
Q psy2846 352 VSRACTRWFTIIADLISS-DQWRYFVLTRF 380 (392)
Q Consensus 352 ~~~~~~~w~~~~A~l~~~-d~~~y~~~~r~ 380 (392)
|++|++ |+++|...+|.
T Consensus 144 ------------a~~~~~~d~~~f~~~~~~ 161 (172)
T 2y9m_A 144 ------------GNIIRCGDMSAYQGIVKY 161 (172)
T ss_dssp ------------HHHHTTTCHHHHHHHHHH
T ss_pred ------------HHHHHhCCHHHHHHHHHH
Confidence 999999 99999998874
No 33
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=8.3e-37 Score=286.53 Aligned_cols=140 Identities=31% Similarity=0.520 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~ 288 (392)
.+.+||++|+++|++++++||++.+.++ ++++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4689999999999999999999999876 567999999999999999999999999999999999999999999999999
Q ss_pred C-CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 289 R-HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 289 ~-~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
. +|.||+++|+ ++|+|++||.+||+| |+++|. .|+.++|+|.++ |++|
T Consensus 82 ~~~G~ICL~iL~-------------~~WsP~~ti~~VL~s--I~sLL~-~Pnp~~Pln~ea---------------a~~~ 130 (215)
T 1tte_A 82 SVTGAICLDILR-------------NAWSPVITLKSALIS--LQALLQ-SPEPNDPQDAEV---------------AQHY 130 (215)
T ss_dssp SSSSCCCSSTTT-------------CCSCTTCCHHHHHHH--HHHHHT-SCCCSSCSCHHH---------------HHHH
T ss_pred CCCCEEECccCC-------------CCCCCcCcHHHHHHH--HHHHHh-CCCCCCccCHHH---------------HHHH
Confidence 8 9999999997 789999999999998 999884 899999999776 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 131 ~~d~~~f~~~ar~ 143 (215)
T 1tte_A 131 LRDRESFNKTAAL 143 (215)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHH
Confidence 9999999988874
No 34
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-36 Score=274.57 Aligned_cols=141 Identities=21% Similarity=0.412 Sum_probs=132.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceee-eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQ-PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~-p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH 284 (392)
...+.+.+||++|+++| ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 22 ~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~H 98 (180)
T 2nvu_C 22 KKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH 98 (180)
T ss_dssp CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred CCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCcc
Confidence 45678999999999999 578899998 7889999999998 9999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846 285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA 364 (392)
Q Consensus 285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A 364 (392)
|||+.+|.||+++|+ ++|+|+++|++||++ |+++|. +|+.++|+|.++ |
T Consensus 99 PNV~~~G~iCl~iL~-------------~~W~p~~~i~~vL~s--i~~ll~-~Pn~~~p~n~~a---------------a 147 (180)
T 2nvu_C 99 PNIDLEGNVALNILR-------------EDWKPVLTINSIIYG--LQYLFL-EPNPEDPLNKEA---------------A 147 (180)
T ss_dssp TTBCTTSBBCCGGGT-------------TSCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------H
T ss_pred CCCCCCCcEEccccc-------------ccCCCCCCHHHHHHH--HHHHHh-CCCCCCccCHHH---------------H
Confidence 999999999999997 789999999999998 999885 899999999777 9
Q ss_pred HHHHhCHHHHHHHhcC
Q psy2846 365 DLISSDQWRYFVLTRF 380 (392)
Q Consensus 365 ~l~~~d~~~y~~~~r~ 380 (392)
++|++|+++|...+|.
T Consensus 148 ~~~~~d~~~f~~~v~~ 163 (180)
T 2nvu_C 148 EVLQNNRRLFEQNVQR 163 (180)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHH
Confidence 9999999999998875
No 35
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3.4e-36 Score=268.12 Aligned_cols=140 Identities=26% Similarity=0.460 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeee-CCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQP-LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p-~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~ 288 (392)
.+.+||++|+++|++++++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 3568999999999999999998655 6789999999998 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
.+|+||+++|+ .++|+|+++|.+||+| |+++|. +|+.++|+|.++ |++|+
T Consensus 81 ~~G~iCl~iL~------------~~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~ 130 (154)
T 1c4z_D 81 EKGQVCLPVIS------------AENWKPATKTDQVIQS--LIALVN-DPQPEHPLRADL---------------AEEYS 130 (154)
T ss_dssp TTCBBCCTTTS------------SSSCCTTCCHHHHHHH--HHHHHH-SCCCSSCSCHHH---------------HHHHH
T ss_pred CCCEEECCCCC------------CCCCCCCCcHHHHHHH--HHHHHc-CCCCCchhhHHH---------------HHHHH
Confidence 99999999996 3789999999999998 999885 999999999776 99999
Q ss_pred hCHHHHHHHhcC
Q psy2846 369 SDQWRYFVLTRF 380 (392)
Q Consensus 369 ~d~~~y~~~~r~ 380 (392)
+|+++|...+|.
T Consensus 131 ~~~~~f~~~~~~ 142 (154)
T 1c4z_D 131 KDRKKFCKNAEE 142 (154)
T ss_dssp TCSSTTHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 999999988774
No 36
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=4.1e-36 Score=267.63 Aligned_cols=137 Identities=20% Similarity=0.410 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-C
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS-R 289 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~-~ 289 (392)
+.+||++|+++++++ |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 79 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence 468999999999874 788999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846 290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS 369 (392)
Q Consensus 290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~ 369 (392)
+|.||+++|+ ++|+|+++|++||++ .|++|| .+|+.++|+|.++ |++|++
T Consensus 80 ~G~iCl~il~-------------~~W~p~~~i~~vl~~-ii~~Ll-~~Pn~~~P~n~~a---------------a~~~~~ 129 (152)
T 2onu_A 80 SGSVCLDVIN-------------QTWTPLYSLVNVFEV-FLPQLL-TYPNPSDPLNSDA---------------ASLLMK 129 (152)
T ss_dssp TCBBCHHHHH-------------HHCCTTCCHHHHHHT-HHHHHH-HSCCCSSCSSHHH---------------HHHHHH
T ss_pred CCeEeccccc-------------ccCCCCCCHHHHHHH-HHHHHH-hCCCCCCcccHHH---------------HHHHHH
Confidence 9999999996 689999999999997 256777 5999999999776 999999
Q ss_pred CHHHHHHHhcC
Q psy2846 370 DQWRYFVLTRF 380 (392)
Q Consensus 370 d~~~y~~~~r~ 380 (392)
|+++|...+|.
T Consensus 130 d~~~y~~~v~~ 140 (152)
T 2onu_A 130 DKNIYEEKVKE 140 (152)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999988874
No 37
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=5.5e-35 Score=269.37 Aligned_cols=142 Identities=22% Similarity=0.405 Sum_probs=132.5
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceee----eCCCCcc---EEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQ----PLDNKRC---HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKF 278 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~----p~~~dl~---~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F 278 (392)
...+.+.+||++||++|+ +++|+++. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|
T Consensus 25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f 101 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101 (190)
T ss_dssp CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence 445789999999999999 78899998 8889999 9999997 888999999999999999999999999999
Q ss_pred ccccccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhh
Q psy2846 279 ITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTR 358 (392)
Q Consensus 279 ~T~IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~ 358 (392)
.|+||||||+.+|.||+++|. ++|+|+++|++||++ |+++|. +|+.++|+|.++
T Consensus 102 ~t~i~HPnV~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~pn~~~pln~~a---------- 155 (190)
T 3o2u_A 102 LKKIFHPNIDLKGNVCLNILR-------------EDWSPALDLQSIITG--LLFLFL-EPNPNDPLNKDA---------- 155 (190)
T ss_dssp CSCCCCTTBCTTSBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH----------
T ss_pred ecCcccCCCCCCCeEechhcc-------------CCCCCCCCHHHHHHH--HHHHHh-CCCCCcchhHHH----------
Confidence 999999999999999999997 799999999999998 999885 999999999776
Q ss_pred hHHHHHHHHHhCHHHHHHHhcCC
Q psy2846 359 WFTIIADLISSDQWRYFVLTRFP 381 (392)
Q Consensus 359 w~~~~A~l~~~d~~~y~~~~r~~ 381 (392)
|++|++|+++|...+|.-
T Consensus 156 -----a~~~~~d~~~f~~~ar~~ 173 (190)
T 3o2u_A 156 -----AKLLCEGEKEFAEAVRLT 173 (190)
T ss_dssp -----HHHHHTCHHHHHHHHHHH
T ss_pred -----HHHHHHCHHHHHHHHHHH
Confidence 999999999999998853
No 38
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.2e-35 Score=268.24 Aligned_cols=145 Identities=14% Similarity=0.275 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHHHHHhhcCC------------CCCceeeeCCCCccEEEEEEecCCCCCCC--CcEEEEEEEeCCCCCCC
Q psy2846 207 DNTWRHFRLRKEYNDIKLDP------------PDGIQAQPLDNKRCHWMATIAGPVASPYE--GGVFYLYIRIPFSYPMH 272 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~------------p~gI~v~p~~~dl~~W~v~I~GP~~TPYe--gG~F~~~I~fP~dYP~~ 272 (392)
|++.+.+||++|+++|++++ +.+|.+.+.++|+++|+++|.||++|||+ ||.|++.|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 44567899999999999987 77899999999999999999999999999 99999999999999999
Q ss_pred CCcCccccccccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhc-CCCCCCCCCchhhhh
Q psy2846 273 PPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQR-RPRVRFPLDDLSLCS 351 (392)
Q Consensus 273 PP~V~F~T~IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~-~P~~~~Pln~~a~~~ 351 (392)
||+|+|.|+||||||+.+|+||+++|. ++|+|+++|++||++ .|++++.. .|+.++|+|.+|
T Consensus 85 pP~v~f~t~i~HPnv~~~G~iCl~il~-------------~~W~p~~~i~~vll~-~l~~l~~~~~pn~~~p~n~ea--- 147 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVTGEGGICDRMVN-------------DFWTPDQHASDVIKL-VLDRVFSQYKSRRDDDVNPEA--- 147 (167)
T ss_dssp CCEEEESSCCCCSSCCTTSCCCTHHHH-------------TTCCTTSCHHHHHHH-HHHHHHTSTTSCCSCCCCHHH---
T ss_pred CCEEEEeCCcccccCCCCCEEEcccCc-------------CCCCCCCChHHHHHH-HHHHHHhcCCCCCcchHhHHH---
Confidence 999999999999999999999999996 799999999998765 26666642 489999999776
Q ss_pred hhhhhhhhHHHHHHHHHhCHHHHHHHhcC
Q psy2846 352 VSRACTRWFTIIADLISSDQWRYFVLTRF 380 (392)
Q Consensus 352 ~~~~~~~w~~~~A~l~~~d~~~y~~~~r~ 380 (392)
|++|++|+++|+..+|.
T Consensus 148 ------------a~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 148 ------------RHYLEKFPQDFAARVRR 164 (167)
T ss_dssp ------------HHHHHHCHHHHHHHHTT
T ss_pred ------------HHHHHHCHHHHHHHHhh
Confidence 99999999999999873
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.7e-34 Score=292.54 Aligned_cols=141 Identities=38% Similarity=0.673 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288 (392)
Q Consensus 209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~ 288 (392)
+.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
.+|.||+++|. ++|+|++||++||+| |+++|. +|+.++|+|.++ |++|+
T Consensus 82 ~~G~iCl~il~-------------~~W~p~~~i~~vL~~--i~~ll~-~pnp~~p~n~~a---------------a~~~~ 130 (399)
T 4ddg_A 82 SNGSISLDILR-------------SQWSPALTISKVLLS--ICSLLC-DPNPDDPLVPEI---------------ARIYK 130 (399)
T ss_dssp TTCBBCCGGGT-------------TSCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------HHHHH
T ss_pred CCCeEeCcccc-------------cCCCccccHHHHHHH--HHHHHc-CCCCCchhhHHH---------------HHHHH
Confidence 99999999996 789999999999998 999985 999999999776 99999
Q ss_pred hCHHHHHHHhcC
Q psy2846 369 SDQWRYFVLTRF 380 (392)
Q Consensus 369 ~d~~~y~~~~r~ 380 (392)
+|+++|...+|.
T Consensus 131 ~d~~~y~~~~~~ 142 (399)
T 4ddg_A 131 TDREKYNRIARE 142 (399)
T ss_dssp HCHHHHHHHHHH
T ss_pred HCHHHHHHHHHH
Confidence 999999998874
No 40
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-34 Score=250.16 Aligned_cols=116 Identities=22% Similarity=0.399 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc-ccccc
Q psy2846 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-FHPNV 287 (392)
Q Consensus 209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I-fHPNV 287 (392)
+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCC
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRV 340 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~ 340 (392)
+.+|+||+++|+ ++|+|+++|++||+| |+++|. +|+.
T Consensus 85 ~~~G~iCl~iL~-------------~~W~P~~~i~~vl~s--i~~ll~-~p~~ 121 (125)
T 2fo3_A 85 YSNGDICLSLLG-------------DDYNPSLSISGLVLS--IISMLS-SAKE 121 (125)
T ss_dssp CTTSBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHC-----
T ss_pred CCCCEEEchhcC-------------CCCCCCCcHHHHHHH--HHHHHh-Cccc
Confidence 999999999996 789999999999998 999885 5554
No 41
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=267.77 Aligned_cols=137 Identities=23% Similarity=0.387 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR 289 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~ 289 (392)
.+.+||++||++|++ +|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~ 100 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence 689999999999985 57888887 67899999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846 290 -HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS 368 (392)
Q Consensus 290 -~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~ 368 (392)
+|.||+++|+ ++|+|+++|++||++ .|+++| .+|+.++|+|.++ |++|+
T Consensus 101 ~~G~ICL~iL~-------------~~WsP~~ti~~iL~s-~I~~Ll-~~Pn~~~p~n~ea---------------a~~~~ 150 (179)
T 2z5d_A 101 ASGTVCLDVIN-------------QTWTALYDLTNIFES-FLPQLL-AYPNPIDPLNGDA---------------AAMYL 150 (179)
T ss_dssp TTCBBCHHHHH-------------HHCCTTCCTTHHHHT-HHHHHH-HSCCCSSCSCHHH---------------HHHHH
T ss_pred CCCeEeccccc-------------cCCCCCCCHHHHHHH-HHHHHH-hCCCCCCccCHHH---------------HHHHH
Confidence 9999999996 689999999999996 378877 5999999999777 99999
Q ss_pred hCHHHHHHHhcC
Q psy2846 369 SDQWRYFVLTRF 380 (392)
Q Consensus 369 ~d~~~y~~~~r~ 380 (392)
+|+++|...+|.
T Consensus 151 ~d~~~y~~~vr~ 162 (179)
T 2z5d_A 151 HRPEEYKQKIKE 162 (179)
T ss_dssp HCHHHHHHHHHH
T ss_pred HCHHHHHHHHHH
Confidence 999999988874
No 42
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.5e-34 Score=258.56 Aligned_cols=130 Identities=23% Similarity=0.377 Sum_probs=119.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCC-ceeee-CCCC--ccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDG-IQAQP-LDNK--RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~g-I~v~p-~~~d--l~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~ 281 (392)
.+...|.+||++|+++|++++++| +++.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 456889999999999999999988 67776 4454 9999999999999999999999999999999999999999999
Q ss_pred ccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846 282 IFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS 348 (392)
Q Consensus 282 IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a 348 (392)
||||||+ .+|+||+++|+. .++|+|+++|++||++ |+++|.++|+.++|+|.++
T Consensus 101 i~HPNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~s--I~~ll~~~pn~~~P~n~ea 155 (160)
T 2a4d_A 101 INMNGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQE--LRRLMMSKENMKLPQPPEG 155 (160)
T ss_dssp CCCTTBCTTTCBBCGGGSHH-----------HHTCCTTCCHHHHHHH--HHHHHTSTTTTTCCCCCTT
T ss_pred ceeCCEECCCCEEehhhcCC-----------ccCCCccCcHHHHHHH--HHHHHccCCCCCCCCChhh
Confidence 9999999 699999999861 1689999999999998 9999988999999999887
No 43
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=8.5e-35 Score=264.04 Aligned_cols=136 Identities=26% Similarity=0.461 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS- 288 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~- 288 (392)
.+.+||++|+++|++++. ++ +.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 678999999999999874 43 3578999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHH-HHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846 289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSI-RDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI 367 (392)
Q Consensus 289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~I-qslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~ 367 (392)
.+|+||+++|+ ++|+|+++|++||++ | +++| ++|+.++|+|.++ |++|
T Consensus 88 ~~G~iCl~iL~-------------~~W~p~~~i~~vL~s--il~~ll-~~Pn~~~p~n~~a---------------a~~~ 136 (171)
T 1yf9_A 88 RSGSVCLDVIN-------------QTWTPMYQLENIFDV--FLPQLL-RYPNPSDPLNVQA---------------AHLL 136 (171)
T ss_dssp TTCBBCHHHHH-------------HHCCTTCCTHHHHHT--HHHHHH-HSCCSSCCSCHHH---------------HHHH
T ss_pred cCCeEeccccc-------------cCCCCCCcHHHHHHH--HHHHHH-hCCCCCCcccHHH---------------HHHH
Confidence 59999999996 689999999999998 6 6766 5999999999776 9999
Q ss_pred HhCHHHHHHHhcC
Q psy2846 368 SSDQWRYFVLTRF 380 (392)
Q Consensus 368 ~~d~~~y~~~~r~ 380 (392)
++|+++|...+|.
T Consensus 137 ~~d~~~y~~~vr~ 149 (171)
T 1yf9_A 137 HADRVGFDALLRE 149 (171)
T ss_dssp HHCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHH
Confidence 9999999988774
No 44
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.1e-34 Score=259.71 Aligned_cols=127 Identities=24% Similarity=0.327 Sum_probs=117.5
Q ss_pred ccccHHHHHHHHHHHHHhhcC-CCCCceeeeCC-C--CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLD-PPDGIQAQPLD-N--KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT 280 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~-~p~gI~v~p~~-~--dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T 280 (392)
..+...|.+||++|+++|+++ +++||++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 16 ~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t 95 (156)
T 2q0v_A 16 FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT 95 (156)
T ss_dssp CSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred CcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc
Confidence 456688999999999999999 78899998853 3 5999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCce---eccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846 281 RIFHPNVSRHGDL---SHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS 348 (392)
Q Consensus 281 ~IfHPNV~~~G~V---CL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a 348 (392)
+||||||+.+|+| |+++|+ +|+|+++|++||+| |+++| .+|+.++|++.++
T Consensus 96 ~i~HPNV~~~G~icisCL~iL~--------------~WsP~~ti~~vL~s--I~~ll-~~Pn~~~p~n~~a 149 (156)
T 2q0v_A 96 KIEMSCVDNCGRVIKNNLHILK--------------NWNRNYTIETILIS--LRQEM-LSSANKRLPQPNE 149 (156)
T ss_dssp CCCCTTBCTTSBBCGGGSHHHH--------------TCCTTCCHHHHHHH--HHHHT-TSTTTTTCCCCCT
T ss_pred ccccCCCccCCeEehhhccccc--------------CCCCcCcHHHHHHH--HHHHH-hCCCCCCcCChHH
Confidence 9999999999999 888875 59999999999998 99988 5999999999988
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=6.5e-34 Score=249.13 Aligned_cols=117 Identities=21% Similarity=0.392 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc-cccc
Q psy2846 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-FHPN 286 (392)
Q Consensus 208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I-fHPN 286 (392)
.+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 97 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH 97 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence 346889999999999999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCC
Q psy2846 287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRV 340 (392)
Q Consensus 287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~ 340 (392)
|+.+|+||+++|+ ++|+|+++|++||+| |+++|. +|+.
T Consensus 98 v~~~G~ICl~iL~-------------~~WsP~~ti~~vL~s--i~sll~-~p~~ 135 (136)
T 2h2y_A 98 VYSNGDICLSVLG-------------DDYNPSLSISGLILS--IISMLS-SAKE 135 (136)
T ss_dssp BCTTCCBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHS-SSCC
T ss_pred CCCCCEEECcccc-------------CCCCCCCcHHHHHHH--HHHHHh-CcCc
Confidence 9999999999997 789999999999998 999884 5543
No 46
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=256.78 Aligned_cols=129 Identities=23% Similarity=0.382 Sum_probs=118.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCC-ceeee-CCCC--ccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc
Q psy2846 207 DNTWRHFRLRKEYNDIKLDPPDG-IQAQP-LDNK--RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI 282 (392)
Q Consensus 207 ~~s~a~kRL~kEl~~L~k~~p~g-I~v~p-~~~d--l~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I 282 (392)
+.+.|.+||++|+++|++++++| +++.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 32 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 111 (170)
T 2hlw_A 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111 (170)
T ss_dssp CCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence 45678999999999999999888 67776 4454 99999999999999999999999999999999999999999999
Q ss_pred cccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846 283 FHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS 348 (392)
Q Consensus 283 fHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a 348 (392)
|||||+ .+|+||+++|+. .++|+|+++|++||++ |+++|.+.|+.++|+|.++
T Consensus 112 ~HPNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~s--I~~ll~~~pn~~~P~n~ea 165 (170)
T 2hlw_A 112 NMNGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQE--LRRLMMSKENMKLPQPPEG 165 (170)
T ss_dssp CCSSBCSSSCBBCTTTCHH-----------HHTCCSSCCHHHHHHH--HHHHHHSTTTSSSCCCSSC
T ss_pred ccCCEeCCCCEEEhhhcCC-----------CCCCCccCcHHHHHHH--HHHHHccCCCCCCCCCccc
Confidence 999999 799999999861 1689999999999998 9999988899999999887
No 47
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=276.78 Aligned_cols=135 Identities=23% Similarity=0.367 Sum_probs=121.7
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCC----ceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDG----IQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~g----I~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~ 281 (392)
.+++.+.+||++|+++|++++|+| +.+.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~ 151 (323)
T 3ceg_A 72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT 151 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence 567899999999999999998875 4566788999999999999999999999999999999999999999999999
Q ss_pred -----cccccccCCCceeccCCCCcccccCCCCcCCCCCcccc-cHHHHHhHHHHHHHHh-cCCCCCCCCCchh
Q psy2846 282 -----IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRH-RLYSILFSNSIRDHIQ-RRPRVRFPLDDLS 348 (392)
Q Consensus 282 -----IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~-sI~sILlS~~IqslL~-~~P~~~~Pln~~a 348 (392)
||||||+.+|+|||++|++ +.+...++|+|++ +|++||+| |+++|. .+|+.++|++.++
T Consensus 152 ~g~~~ifHPNV~~~G~ICLsiL~~------~~g~~~e~WsPa~stI~~VLls--IqsLL~~~~Pn~~dP~~~~a 217 (323)
T 3ceg_A 152 GGHSVRFNPNLYNDGKVCLSILNT------WHGRPEEKWNPQTSSFLQVLVS--VQSLILVAEPYFNEPGYERS 217 (323)
T ss_dssp TTTTCCCBTTBCTTCBBCCGGGTS------SCCCGGGSCCTTTCCHHHHHHH--HHHHTSCSSGGGGSTTGGGG
T ss_pred CCCcccccCCCCcCCeEechhhcc------ccCCCcCCCCcCcCCHHHHHHH--HHHHHcCCCCCCCCccCHHH
Confidence 9999999999999999973 3344568999999 89999998 999985 6888899998765
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-33 Score=245.89 Aligned_cols=108 Identities=28% Similarity=0.552 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhhcCCCCCceee--eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc--cccc
Q psy2846 212 HFRLRKEYNDIKLDPPDGIQAQ--PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF--HPNV 287 (392)
Q Consensus 212 ~kRL~kEl~~L~k~~p~gI~v~--p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If--HPNV 287 (392)
.+||++|++++++++++||++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 4999999999999999999965 78899999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHH
Q psy2846 288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHI 334 (392)
Q Consensus 288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL 334 (392)
+.+|+||+++|+ ++|+|+++|++||+| |+++|
T Consensus 104 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~slL 135 (136)
T 2a7l_A 104 YSNGHICLSILT-------------EDWSPALSVQSVCLS--IISML 135 (136)
T ss_dssp CTTCBBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHT
T ss_pred CCCCeEEchhcC-------------CCCCCCCcHHHHHHH--HHHHh
Confidence 999999999997 789999999999998 99987
No 49
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=2.1e-33 Score=246.25 Aligned_cols=123 Identities=27% Similarity=0.441 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhhcC-CCCCceeeeCC-C--CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846 209 TWRHFRLRKEYNDIKLD-PPDGIQAQPLD-N--KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284 (392)
Q Consensus 209 s~a~kRL~kEl~~L~k~-~p~gI~v~p~~-~--dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH 284 (392)
..|.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 84 (138)
T 1jat_B 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84 (138)
T ss_dssp CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence 45789999999999998 78899998853 3 49999999999999999999999999999999999999999999999
Q ss_pred ccccCC-Cce--eccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846 285 PNVSRH-GDL--SHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS 348 (392)
Q Consensus 285 PNV~~~-G~V--CL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a 348 (392)
|||+.+ |+| |+++|+ +|+|+++|++||++ |+++| .+|+.++|++.++
T Consensus 85 Pnv~~~~G~i~~cL~~l~--------------~W~p~~~i~~vl~~--i~~ll-~~pn~~~p~~~~~ 134 (138)
T 1jat_B 85 PCVNPTTGEVQTDFHTLR--------------DWKRAYTMETLLLD--LRKEM-ATPANKKLRQPKE 134 (138)
T ss_dssp TTBCTTTCBBCTTSHHHH--------------TCCTTCCHHHHHHH--HHHHH-TSHHHHTSCCCCT
T ss_pred CCEeCCCCEEeeecccCC--------------CCCCcCcHHHHHHH--HHHHH-cCCCCCCCCCcch
Confidence 999986 999 899874 79999999999998 99988 4999999999877
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=6.5e-31 Score=241.63 Aligned_cols=121 Identities=26% Similarity=0.435 Sum_probs=102.6
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP 285 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP 285 (392)
...+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ ||
T Consensus 10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~ 87 (187)
T 2f4w_A 10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG 87 (187)
T ss_dssp ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence 5667899999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCC
Q psy2846 286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVR 341 (392)
Q Consensus 286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~ 341 (392)
||+.+|+|||++|+ .+.++|+|+++|.+||++ |+++|. .|+.+
T Consensus 88 ~~~~~G~ICL~iL~----------~~~~~W~P~~ti~~vL~s--i~sll~-~p~p~ 130 (187)
T 2f4w_A 88 RFKCNTRLCLSITD----------FHPDTWNPAWSVSTILTG--LLSFMV-EKGPT 130 (187)
T ss_dssp SBCTTSCBC--------------------CCTTCCHHHHHHH--HHHHHH-SCCCC
T ss_pred eeccCCeEeeeccc----------cCccCCCCcCcHHHHHHH--HHHHhc-CCCCC
Confidence 99999999999995 224799999999999998 999995 66654
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.96 E-value=7.7e-31 Score=241.00 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=110.6
Q ss_pred ccccHHHHHHHHHHHHHhhcCC---CCCceeeeCCCCccEEEEEEecC-CCCCCCC-----------cEEEEEEEeCCCC
Q psy2846 205 QEDNTWRHFRLRKEYNDIKLDP---PDGIQAQPLDNKRCHWMATIAGP-VASPYEG-----------GVFYLYIRIPFSY 269 (392)
Q Consensus 205 ~~~~s~a~kRL~kEl~~L~k~~---p~gI~v~p~~~dl~~W~v~I~GP-~~TPYeg-----------G~F~~~I~fP~dY 269 (392)
..+++.+.+||++||++|++++ +.+|++.+.++|+++|+++|.|| ++|||+| |.|+|+|.||++|
T Consensus 22 ~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y 101 (186)
T 1zuo_A 22 VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF 101 (186)
T ss_dssp --CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence 3567789999999999999998 68899999999999999999998 9999998 8999999999999
Q ss_pred CCCCCcCccccccccc-cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCC
Q psy2846 270 PMHPPKVKFITRIFHP-NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRV 340 (392)
Q Consensus 270 P~~PP~V~F~T~IfHP-NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~ 340 (392)
|++||+|+|.|++||| ||+.+|.|||++|+ .++|+|+++|++||++ |+++|. +|+.
T Consensus 102 P~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~------------~~~WsP~~ti~~VL~s--I~slL~-~p~a 158 (186)
T 1zuo_A 102 PFDPPFVRVVLPVLSGGYVLGGGALCMELLT------------KQGWSSAYSIESVIMQ--INATLV-KGKA 158 (186)
T ss_dssp TSSCCEEEEEESCEESTTBCGGGBBCCGGGS------------TTTCCTTSCHHHHHHH--HHHHHH-HTTC
T ss_pred CCCCCeEEEeCCccCCCccCCCCcEEeccCC------------CCCCCCcCcHHHHHHH--HHHHHc-CCCh
Confidence 9999999999999999 69999999999996 3689999999999998 999996 4443
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.87 E-value=2.7e-23 Score=186.84 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=94.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCc----------EEEEEEEeCCCCCCCCCc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGG----------VFYLYIRIPFSYPMHPPK 275 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG----------~F~~~I~fP~dYP~~PP~ 275 (392)
.....-.+||++|++.|++ ++.+..+|+..|.++|.||++|+|+|| .|.++|.||.+||++||+
T Consensus 28 ~~~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPe 101 (172)
T 2z6o_A 28 RDRELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPE 101 (172)
T ss_dssp TCTHHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred CccHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCe
Confidence 3457779999999999998 467777899999999999999999999 999999999999999999
Q ss_pred Cccccc-cccccccCCCceeccCCC-CcccccCCCCcCCCCCcccccHHHHHh
Q psy2846 276 VKFITR-IFHPNVSRHGDLSHAPAQ-GEIYHSNISSECAETWGRRHRLYSILF 326 (392)
Q Consensus 276 V~F~T~-IfHPNV~~~G~VCL~iL~-~~~~~~~~~~~~~e~WsP~~sI~sILl 326 (392)
|+|.++ +||||||.+|+|||++|. +.| ..|+|+++|.+||.
T Consensus 102 V~F~~~~~~hpnmY~~G~ICLdIL~kp~W----------s~~~P~~~IahiL~ 144 (172)
T 2z6o_A 102 IAVPELDGKTAKMYRGGKICLTDHFKPLW----------ARNVPKFGLAHLMA 144 (172)
T ss_dssp CBCGGGTTTCSSBCTTSBBCCCTTHHHHH----------HHHTTSCCHHHHHH
T ss_pred eeeCCCCCCCCCCCCCCcEechhhccccc----------cccCCccCHHHHHh
Confidence 999998 999999999999999994 223 46779999999986
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.53 E-value=1.1e-14 Score=131.11 Aligned_cols=113 Identities=11% Similarity=0.178 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhcCCC---CCceeeeCCCCccEEEEEEecCCCCCCCCcE---EEEEEEeCCCCCCCCCcCcccc------
Q psy2846 213 FRLRKEYNDIKLDPP---DGIQAQPLDNKRCHWMATIAGPVASPYEGGV---FYLYIRIPFSYPMHPPKVKFIT------ 280 (392)
Q Consensus 213 kRL~kEl~~L~k~~p---~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~---F~~~I~fP~dYP~~PP~V~F~T------ 280 (392)
+|..+|+..+.+.-+ +...+...++....+.+.+.|.-.++|+||. |.+.|.||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 456677776654322 2233344556666777777777779999998 8899999999999999998855
Q ss_pred -c---cc-cccccCCCceeccCCCCcccccCCCCcCCCCCcc-cccHHHHHhHHHHHHHHhcCCCCCC
Q psy2846 281 -R---IF-HPNVSRHGDLSHAPAQGEIYHSNISSECAETWGR-RHRLYSILFSNSIRDHIQRRPRVRF 342 (392)
Q Consensus 281 -~---If-HPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP-~~sI~sILlS~~IqslL~~~P~~~~ 342 (392)
+ |+ ||||+.+|+||+++|. +|+| +.+|.++|.+ |+++| .+|+.+.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~--------------~W~p~~s~L~~ll~~--l~~lf-~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH--------------AWDPAAMNLIMVVQE--LMSLL-HEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG--------------SCCGGGCCHHHHHHH--HHHTT-SCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccc--------------cCCCCcCcHHHHHHH--HHHHh-cCCCCCC
Confidence 1 77 9999999999999996 6999 5789999997 88877 5887653
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.50 E-value=7e-15 Score=129.89 Aligned_cols=87 Identities=21% Similarity=0.385 Sum_probs=73.8
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCc----------EEEEEEEeCCCCCCCCCc
Q psy2846 206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGG----------VFYLYIRIPFSYPMHPPK 275 (392)
Q Consensus 206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG----------~F~~~I~fP~dYP~~PP~ 275 (392)
.....-..||..||+.|-+ ++....++-..|...+.||+||+|.|+ .|.+++.||.+||.+||+
T Consensus 30 rd~~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe 103 (168)
T 3kpa_A 30 RDGDKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE 103 (168)
T ss_dssp TSTHHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence 3446688999999999874 333333333469999999999999999 999999999999999999
Q ss_pred Cccccc-cccccccCCCceeccCC
Q psy2846 276 VKFITR-IFHPNVSRHGDLSHAPA 298 (392)
Q Consensus 276 V~F~T~-IfHPNV~~~G~VCL~iL 298 (392)
|+|.+. ++|||+|.+|+|||+++
T Consensus 104 I~Fp~ldgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 104 IALPELEGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp CBCGGGTTTCSSEETTTEECCCTT
T ss_pred eecccccCcCccccCCCcEEeccc
Confidence 999995 89999999999999963
No 55
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.32 E-value=6e-13 Score=97.14 Aligned_cols=47 Identities=38% Similarity=0.706 Sum_probs=40.3
Q ss_pred CCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHH
Q psy2846 110 GSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYF 159 (392)
Q Consensus 110 ~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~ 159 (392)
+..+..||.||+.+||+||+..||++|++|||+|+.++.++ .+|+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~---~lW~~l 52 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE---SLWQTL 52 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG---GGC---
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh---HHHHhc
Confidence 34788999999999999999999999999999999999998 999975
No 56
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.15 E-value=2.8e-11 Score=118.30 Aligned_cols=68 Identities=19% Similarity=0.396 Sum_probs=58.7
Q ss_pred CccCCCCHHHHHHHhccCCHHHHH-HHHHHhHHHHHHHhCCCChhHHHHHHHhhCCCCcc---CccccchHHHHHh
Q psy2846 111 SSIHSLPPEVLITVFSYLDDLSLC-SVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNS---NITVSNWYSVYAK 182 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd~~sL~-~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~~~~---~~~~~~Wkk~Y~k 182 (392)
..+..||+|||+.||+||++.+|+ +|++|||+|+.|+++. .+|+.+|.++ .+++. .....+||++|..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~---~~w~~~~~~~-g~~~~~~~~~~~~~Wk~~y~~ 120 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA---PLWLLKCQQE-GLVPEGSADEERDHWQQFYFL 120 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH---HHHHHHHHHT-TCCCC-----CCSCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh---HHHHHHhhcc-CcccccccCCCCCChhhhheh
Confidence 478889999999999999999999 9999999999999999 9999999997 33322 2256789999976
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.15 E-value=1.8e-11 Score=119.76 Aligned_cols=53 Identities=23% Similarity=0.443 Sum_probs=49.0
Q ss_pred CCCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhC-CCChhHHHHHHHhhC
Q psy2846 109 GGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD-LISSDQWRYFVLTRF 164 (392)
Q Consensus 109 ~~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~-~~~~~lW~~~~~~~~ 164 (392)
..|++..||.||+++||+|||+.+|++|++|||+|++++.+ + .+||.+|.+..
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~---~~w~~~~~~~~ 64 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST---SLWKKLLISEN 64 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCH---HHHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHhccc
Confidence 34599999999999999999999999999999999999998 7 99999998764
No 58
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.13 E-value=4.5e-11 Score=105.79 Aligned_cols=81 Identities=19% Similarity=0.402 Sum_probs=70.5
Q ss_pred CCccEEEEEEecCCCCCCCCcEEEE--EEEeCCCCCCCCCcCccccc------cccccccCCCceeccCCCCcccccCCC
Q psy2846 237 NKRCHWMATIAGPVASPYEGGVFYL--YIRIPFSYPMHPPKVKFITR------IFHPNVSRHGDLSHAPAQGEIYHSNIS 308 (392)
Q Consensus 237 ~dl~~W~v~I~GP~~TPYegG~F~~--~I~fP~dYP~~PP~V~F~T~------IfHPNV~~~G~VCL~iL~~~~~~~~~~ 308 (392)
.++..|.++|. .+|+|+.|.+ .|-||.+||++||.| |.++ .+||||+.+|+||++.|+
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~--------- 116 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH--------- 116 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH---------
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc---------
Confidence 57999999997 6899999995 888999999999999 7666 589999999999999996
Q ss_pred CcCCCCCcc-cccHHHHHhHHHHHHHHhcCC
Q psy2846 309 SECAETWGR-RHRLYSILFSNSIRDHIQRRP 338 (392)
Q Consensus 309 ~~~~e~WsP-~~sI~sILlS~~IqslL~~~P 338 (392)
+|++ ..+|.+++.+ +++.+..+|
T Consensus 117 -----~W~~~~snL~~ll~~--l~~~F~~ep 140 (146)
T 3obq_A 117 -----EWKHPQSDLLGLIQV--MIVVFGDEP 140 (146)
T ss_dssp -----TCCTTTCCHHHHHHH--HHHHHHHSC
T ss_pred -----ccCCCCCCHHHHHHH--HHHHHhhCC
Confidence 5887 7789999997 888887444
No 59
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.11 E-value=4e-11 Score=117.30 Aligned_cols=52 Identities=31% Similarity=0.693 Sum_probs=48.9
Q ss_pred CccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCC
Q psy2846 111 SSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFP 165 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~ 165 (392)
.+++.||.||+++|||||+++|||++++|||+|+.+++|+ .|||.++.+.++
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~---~LWr~~l~rd~~ 54 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP---ILWRYFLLRDLP 54 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH---HHHHHHHHSSGG
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc---hHHHHHHhccCC
Confidence 4788999999999999999999999999999999999999 999999998643
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.11 E-value=8.7e-11 Score=115.05 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=57.8
Q ss_pred CCCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCCC----------ccCccccchHH
Q psy2846 109 GGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLF----------NSNITVSNWYS 178 (392)
Q Consensus 109 ~~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~~----------~~~~~~~~Wkk 178 (392)
..|++..||.|++.+||+|||+.||++|++|||+|+.++.++ .+|+++|+++.-.- .+......||.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~ 91 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN---LLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS 91 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS---HHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch---hHhhhheeecccccccccccceecCCCccCCcHHH
Confidence 456999999999999999999999999999999999999999 99999998754221 11123356777
Q ss_pred HHHh
Q psy2846 179 VYAK 182 (392)
Q Consensus 179 ~Y~k 182 (392)
.|.+
T Consensus 92 ~~~~ 95 (445)
T 2ovr_B 92 AYIR 95 (445)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7764
No 61
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.04 E-value=6e-11 Score=116.32 Aligned_cols=53 Identities=26% Similarity=0.609 Sum_probs=50.2
Q ss_pred CCccCCCCHH----HHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCC
Q psy2846 110 GSSIHSLPPE----VLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFP 165 (392)
Q Consensus 110 ~~~~~~LP~e----il~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~ 165 (392)
.|++..||.| |+++||+|||+.||++|++|||+|+.++.++ .+||.+|.+++.
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~---~~w~~~~~~~~~ 64 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG---MLWKKLIERMVR 64 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT---THHHHHHHHHHT
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh---HHHHHHHHhhcC
Confidence 4599999999 9999999999999999999999999999999 999999999864
No 62
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.23 E-value=3e-07 Score=87.15 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=42.0
Q ss_pred CccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHH
Q psy2846 111 SSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYF 159 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~ 159 (392)
..++.||+||+.+||+||+..++++|++|||+|+.++.+. .+|+.+
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~---~~~~~l 52 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE---SLWQTL 52 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS---TTSSEE
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc---hhheee
Confidence 4678999999999999999999999999999999999887 777744
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.79 E-value=8.7e-06 Score=82.78 Aligned_cols=36 Identities=42% Similarity=0.698 Sum_probs=29.7
Q ss_pred CccCCCCHHHHHHHhccCC-HHHHHHHHHHhHHHHHH
Q psy2846 111 SSIHSLPPEVLITVFSYLD-DLSLCSVSRACTRWFTI 146 (392)
Q Consensus 111 ~~~~~LP~eil~~IFsyLd-~~sL~~~~~VCk~W~~i 146 (392)
|.++.||+|||.+||+||+ .+++.++++|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4788999999999999999 99999999999999999
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.29 E-value=7.7e-05 Score=75.89 Aligned_cols=35 Identities=31% Similarity=0.519 Sum_probs=32.4
Q ss_pred cCCCCHHHHHHHhccC-CHHHHHHHHHHhHHHHHHH
Q psy2846 113 IHSLPPEVLITVFSYL-DDLSLCSVSRACTRWFTII 147 (392)
Q Consensus 113 ~~~LP~eil~~IFsyL-d~~sL~~~~~VCk~W~~i~ 147 (392)
...||+||+.+||+|| +.+++.++++|||+|+.+.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 3469999999999999 8999999999999999983
No 65
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=96.81 E-value=0.00058 Score=56.31 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=41.2
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCCCccCccccchHHHHHhhhcc
Q psy2846 116 LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVES 186 (392)
Q Consensus 116 LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~~~~~~~~~~Wkk~Y~kLves 186 (392)
.|-++|.-|+...++..|.++-.-|- .++.+. ++||+.+|.+.|+...+ ....+||++|.+|.+.
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP---~L~~dT--deLWk~~c~rdF~~~~p-~e~esWRelY~rl~~e 77 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNH---VLIEET--DQLWKVHCHRDFKEERP-EEYESWREMYLRLQDA 77 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC---------CC--HHHHHHHC----CCSCC-CSSSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCc---ccchhh--HHHHHHHHHhHCcccCC-CCCCCHHHHHHHHHHH
Confidence 57789999999999999999999887 444333 59999999999997654 6678999999998753
No 66
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=92.53 E-value=0.55 Score=39.67 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeCC------CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846 210 WRHFRLRKEYNDIKLDPPDGIQAQPLD------NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT 280 (392)
Q Consensus 210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~------~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T 280 (392)
.-..+-..|+..|+.--+..+...... +....+.+.|.+..+ .-..-.+.+.|.+|.+||..||.|.+.+
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 10 QYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred chHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 334566789998886544444332111 124567788874222 1123478899999999999999988654
No 67
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.78 E-value=0.28 Score=40.94 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT 280 (392)
Q Consensus 211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T 280 (392)
...+...|+..|+.--+..+.+ .++....+.+.|..-.+..-+.-.+.+.|.||.+||..||.+.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3456778999998654444444 2333456677665322222233468899999999999999987643
No 68
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=90.19 E-value=0.82 Score=38.01 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCCCceeeeCC--CCccEEEEEEecCCCCCCC--CcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846 214 RLRKEYNDIKLDPPDGIQAQPLD--NKRCHWMATIAGPVASPYE--GGVFYLYIRIPFSYPMHPPKVKFIT 280 (392)
Q Consensus 214 RL~kEl~~L~k~~p~gI~v~p~~--~dl~~W~v~I~GP~~TPYe--gG~F~~~I~fP~dYP~~PP~V~F~T 280 (392)
....|+..|+.--+..+.+.... .....+.+.|..+.+..-+ .-.+.+.|.+|.+||..+|.|...+
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 57789998886555555443221 2345666666532221111 2478899999999999999988765
No 69
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.28 E-value=1.6 Score=36.30 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCC--CceeeeC-CCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccc
Q psy2846 214 RLRKEYNDIKLDPPD--GIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI 279 (392)
Q Consensus 214 RL~kEl~~L~k~~p~--gI~v~p~-~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~ 279 (392)
....|+..|+.--+. .+.+... ..+...+.+.|.. .+..=..-.+.+.|.+|.+||..||.+.+.
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 456788888754322 3433211 1234577788763 221101237899999999999999998765
No 70
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=83.46 E-value=5.5 Score=36.13 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCCce
Q psy2846 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293 (392)
Q Consensus 214 RL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G~V 293 (392)
+|.+|+.++-=+ .+...+.++...++.+..- .|....++|.++.+||.+||.+...-|+ |.
T Consensus 5 ~li~Ei~~iGW~-----~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------- 65 (186)
T 3zqs_A 5 SLIEEIGTLGWD-----KLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF------- 65 (186)
T ss_dssp SHHHHHHHHCGG-----GEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC-------
T ss_pred HHHHHHHHhCCc-----eeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-------
Confidence 688888888432 2333467888999999843 3788999999999999999986543332 10
Q ss_pred eccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHH
Q psy2846 294 SHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHI 334 (392)
Q Consensus 294 CL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL 334 (392)
.-.|++..++..|+.- ++..|
T Consensus 66 ------------------~~~w~~~ssL~~v~~q--F~~~L 86 (186)
T 3zqs_A 66 ------------------CASWTPQSSLISIYSQ--FLAAI 86 (186)
T ss_dssp ------------------CCCCCTTCCHHHHHHH--HHHHH
T ss_pred ------------------ccccCCCccHHHHHHH--HHHHH
Confidence 1368888898888773 55544
No 71
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=82.20 E-value=3.8 Score=34.21 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhcCCCCCceeeeCCC-----CccEEEEEEecCCC-C-CCCCcEEEEEEEeCCCCCCCCCcCccc
Q psy2846 212 HFRLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVA-S-PYEGGVFYLYIRIPFSYPMHPPKVKFI 279 (392)
Q Consensus 212 ~kRL~kEl~~L~k~~p~gI~v~p~~~-----dl~~W~v~I~GP~~-T-PYegG~F~~~I~fP~dYP~~PP~V~F~ 279 (392)
..+...|+..|+.--+..+....... ....+.+.|. |.+ . .-..-.+.+.|.||.+||..||.|.+.
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 45667899888865444444322111 1345666775 222 1 001246889999999999999999774
No 72
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=76.03 E-value=5.7 Score=34.34 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhcCCC--CCceeeeC-------------CCC-c--cEEEEEEecCCCCCCCCcEEEEEEEeCCCCC
Q psy2846 209 TWRHFRLRKEYNDIKLDPP--DGIQAQPL-------------DNK-R--CHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270 (392)
Q Consensus 209 s~a~kRL~kEl~~L~k~~p--~gI~v~p~-------------~~d-l--~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP 270 (392)
.....+-..|+..|+.-=+ .-+.+.-. ..+ . ..+.+.|.-. + + ...+.+.|.+|.+||
T Consensus 13 ~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~-~-~--~~~i~L~v~lP~~YP 88 (154)
T 2daw_A 13 KESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIE-E-P--KVKIDLQVTMPHSYP 88 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEET-T-T--TEEEEEEEEECSSTT
T ss_pred hhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecC-C-C--CceEEEEEEcCCCCC
Confidence 4445566778888886433 33443210 001 2 3455444321 1 1 237999999999999
Q ss_pred CCCCcCcccc
Q psy2846 271 MHPPKVKFIT 280 (392)
Q Consensus 271 ~~PP~V~F~T 280 (392)
..+|.|...+
T Consensus 89 ~~~P~i~l~~ 98 (154)
T 2daw_A 89 YLALQLFGRS 98 (154)
T ss_dssp SSCCEEEEEC
T ss_pred CCCCcEEEEe
Confidence 9999987544
No 73
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=70.18 E-value=5.1 Score=34.32 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=20.2
Q ss_pred EEEEEEEeCCCCCCCCCcCcccc
Q psy2846 258 VFYLYIRIPFSYPMHPPKVKFIT 280 (392)
Q Consensus 258 ~F~~~I~fP~dYP~~PP~V~F~T 280 (392)
.+.+.|.+|.+||..||.+....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 58899999999999999997654
Done!