RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2846
(392 letters)
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 128 bits (325), Expect = 3e-36
Identities = 43/92 (46%), Positives = 55/92 (59%)
Query: 202 SSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYL 261
S L + R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L
Sbjct: 11 SGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 70
Query: 262 YIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
I P YP PPKV F TRI+HPN++ +G +
Sbjct: 71 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 127 bits (322), Expect = 6e-36
Identities = 40/86 (46%), Positives = 53/86 (61%)
Query: 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPF 267
+ R++KE D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61
Query: 268 SYPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPKV F TRI+HPN++ +G +
Sbjct: 62 DYPFKPPKVAFTTRIYHPNINSNGSI 87
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 127 bits (321), Expect = 9e-36
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ++ +PP GI A P+ H+ I GP +PYEGG + L + +P YPM P
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 274 PKVKFITRIFHPNVSRHGD 292
PKV+F+T+I+HPN+ + G
Sbjct: 65 PKVRFLTKIYHPNIDKLGR 83
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 127 bits (320), Expect = 1e-35
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIP 266
+ R+ KE + +P GI+A+P ++ ++ IAGP SP+EGG F L + +P
Sbjct: 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDL 293
YPM PKV+F+T+I+HPNV + G +
Sbjct: 62 EEYPMAAPKVRFMTKIYHPNVDKLGRI 88
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 126 bits (320), Expect = 1e-35
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + DP GI A+P D+ ++ TI GP SPYE G+F L + +P YPM
Sbjct: 9 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 68
Query: 274 PKVKFITRIFHPNVSRHGD 292
PKV+F+T+I+HPN+ R G
Sbjct: 69 PKVRFLTKIYHPNIDRLGR 87
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 127 bits (321), Expect = 1e-35
Identities = 40/80 (50%), Positives = 50/80 (62%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY GGVF+L I P YP P
Sbjct: 25 RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F T+I+HPN++ G +
Sbjct: 85 PKVNFTTKIYHPNINSQGAI 104
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 127 bits (320), Expect = 2e-35
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL++E + + +PP GI ++ A I G +PYE GVF L + IP YP P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 274 PKVKFITRIFHPNVSRHGD 292
P+++F+T I+HPN+ G
Sbjct: 68 PQIRFLTPIYHPNIDSAGR 86
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 126 bits (319), Expect = 2e-35
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
+ KE + DPPDGI+ P + TI GP +PY GG+F + + + +P P
Sbjct: 17 LVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP 76
Query: 274 PKVKFITRIFHPNVSRHGD 292
PK F+T+IFHPNV +G+
Sbjct: 77 PKGYFLTKIFHPNVGANGE 95
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 127 bits (320), Expect = 6e-35
Identities = 37/90 (41%), Positives = 51/90 (56%)
Query: 202 SSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYL 261
+L + RL+KE DI+ + I A D+ W+ I GP +PYEGG F L
Sbjct: 15 ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 262 YIRIPFSYPMHPPKVKFITRIFHPNVSRHG 291
I IP YP +PPK+KF+T+I+HPN+S
Sbjct: 75 AITIPNDYPYNPPKIKFVTKIWHPNISSQT 104
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 126 bits (318), Expect = 6e-35
Identities = 40/107 (37%), Positives = 52/107 (48%)
Query: 186 STPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMAT 245
T + + S + + R++KE DI LDPP A P + W +T
Sbjct: 24 EKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRST 83
Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
I GP S YEGGVF+L I YP PPKV F TRI+H N++ G
Sbjct: 84 ILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGV 130
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 125 bits (315), Expect = 1e-34
Identities = 30/108 (27%), Positives = 46/108 (42%)
Query: 186 STPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMAT 245
P T + + S RL++E + + GI A P + W+ T
Sbjct: 6 RDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGT 65
Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
I G + YE + L + P YP + P VKF+T +HPNV G++
Sbjct: 66 IHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNI 113
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 121 bits (305), Expect = 2e-33
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIR 264
R+FRL +E + + DG + L++ W I GP + YE ++ L I
Sbjct: 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 83
Query: 265 IPFSYPMHPPKVKFITRIFHPNVSRHG 291
YP PP V+F+T+I V+
Sbjct: 84 CGPKYPEAPPFVRFVTKINMNGVNSSN 110
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 127 bits (320), Expect = 3e-33
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE ND+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 67 PKVAFTTRIYHPNINSNGSI 86
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 119 bits (301), Expect = 8e-33
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL++E + + GI A P + W+AT+ GP + YE + L + P YP P
Sbjct: 13 RLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP 72
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P VKF T +HPNV + G++
Sbjct: 73 PVVKFTTPCWHPNVDQSGNI 92
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 118 bits (299), Expect = 1e-32
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKR-CHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
R+ KE +K DP I + + H T GP +PYEGG F + I +P YP
Sbjct: 5 RIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFK 64
Query: 273 PPKVKFITRIFHPNVSR 289
PPK++F T+++HPN+S
Sbjct: 65 PPKMQFDTKVYHPNISS 81
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 120 bits (303), Expect = 2e-32
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKR-CHWMATIAGPVASPYEGGVFYLYIRIPF 267
+ R R+ KE +K DP I + + H T GP +PYEGG F + I +P
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 268 SYPMHPPKVKFITRIFHPNVSR 289
YP PPK++F T+++HPN+S
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISS 82
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 119 bits (300), Expect = 2e-32
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIR 264
R+FRL +E + + DG + L++ W I GP + YE ++ L I
Sbjct: 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 93
Query: 265 IPFSYPMHPPKVKFITRIFHPNVSRHG 291
YP PP V+F+T+I V+
Sbjct: 94 CGPKYPEAPPFVRFVTKINMNGVNSSN 120
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 118 bits (297), Expect = 3e-32
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 214 RLRKEYNDIKLDPPD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R+++E+ ++ I+ +D IAGP +PYEGG + L I+IP +YP
Sbjct: 12 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71
Query: 271 MHPPKVKFITRIFHPNVSR 289
+PPKV+FIT+I+HPN+S
Sbjct: 72 FNPPKVRFITKIWHPNISS 90
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 118 bits (297), Expect = 3e-32
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ ++ DPP GI P DN W A I GP +P++GG F L ++ YP P
Sbjct: 8 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P V+F++R+FHPN+ G +
Sbjct: 68 PTVRFVSRMFHPNIYADGSI 87
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 117 bits (295), Expect = 5e-32
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
L ++ D G + + + GP + YEGG++ +++ +P YP
Sbjct: 3 SLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS 62
Query: 274 PKVKFITRIFHPNVSR 289
P + F+ ++ HPNV
Sbjct: 63 PSIGFMNKLLHPNVDE 78
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 116 bits (293), Expect = 1e-31
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
L KE +++ + P + D + H P Y+GG F +P +Y M P
Sbjct: 18 LLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 274 PKVKFITRIFHPNVSRHGD 292
PKVK +T+I+HPN++ G+
Sbjct: 78 PKVKCLTKIWHPNITETGE 96
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 114 bits (288), Expect = 3e-31
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE ++ +PP N W+ G + Y V+ L I P YP+ P
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 274 PKVKFITR-IFHPNVSRHGDL 293
P V F+ + H +V +GD+
Sbjct: 70 PIVYFLQKPPKHTHVYSNGDI 90
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 115 bits (290), Expect = 4e-31
Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
L +++ D+K + GI A+P+ W I G S ++G VF L I Y P
Sbjct: 27 LLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP 86
Query: 274 PKVKFITRIFHPNVSRH 290
P VKFIT FHPNV H
Sbjct: 87 PVVKFITIPFHPNVDPH 103
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 116 bits (292), Expect = 4e-31
Identities = 32/81 (39%), Positives = 43/81 (53%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
+ R G+ AQ + W IAGP+ +PYEGG F L I IP YP
Sbjct: 46 QLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYP 105
Query: 271 MHPPKVKFITRIFHPNVSRHG 291
+PPK+KF+T+I+HPN+S
Sbjct: 106 YNPPKMKFVTKIWHPNISSQT 126
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 116 bits (292), Expect = 5e-31
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 214 RLRKEYNDIK---LDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R+++E+ ++ + I+ +D IAGP +PYEGG + L I+IP +YP
Sbjct: 9 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 68
Query: 271 MHPPKVKFITRIFHPNVSR 289
+PPKV+FIT+I+HPN+S
Sbjct: 69 FNPPKVRFITKIWHPNISS 87
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 116 bits (293), Expect = 1e-30
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 168 NSNITVSNWYSVYAKLVESTPCYTC-LQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDP 226
+ + + + +P D S + R+++E+ ++
Sbjct: 14 RGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSE 73
Query: 227 PD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF 283
I+ +D IAGP +PYEGG + L I+IP +YP +PPKV+FIT+I+
Sbjct: 74 ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133
Query: 284 HPNVSR 289
HPN+S
Sbjct: 134 HPNISS 139
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 112 bits (283), Expect = 2e-30
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE N+ +PP + W+ G + Y V+ + I P +YP+ P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 274 PKVKFITR-IFHPNVSRHGDL 293
P V F+ + H +V +GD+
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDI 104
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 113 bits (285), Expect = 2e-30
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL++E + D P G A+P+ W A I G + + GGV+ + + P
Sbjct: 8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHG 291
YP PPKVKF +HPNV G
Sbjct: 68 YPSKPPKVKFPAGFYHPNVYPSG 90
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 113 bits (284), Expect = 3e-30
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
R+ KE D++ PP ++ D W A + P PY F L I P YP
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 66
Query: 273 PPKVKFITRIFHPNVSRHGD 292
PP +KF T+I+HPNV +G
Sbjct: 67 PPMIKFTTKIYHPNVDENGQ 86
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 112 bits (282), Expect = 4e-30
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL KE +I+ + + + W I P PY+ G F + I P YP
Sbjct: 6 RLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFK 64
Query: 273 PPKVKFITRIFHPNVSRHGD 292
PPK+ F T+I+HPN+ G
Sbjct: 65 PPKITFKTKIYHPNIDEKGQ 84
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 112 bits (283), Expect = 4e-30
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ +K D P G+ A PL + W A I GP +PYE G F L + YP P
Sbjct: 8 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
P VKF++ +FHPNV +G++
Sbjct: 68 PHVKFLSEMFHPNVYANGEI 87
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 111 bits (280), Expect = 9e-30
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGD 292
YP PPK KF +FHPNV G
Sbjct: 71 YPSSPPKCKFEPPLFHPNVYPSGT 94
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 111 bits (280), Expect = 1e-29
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
LR++ ++ +P +G A + DN W I GP + YEGGVF ++ P YP+
Sbjct: 21 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 80
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK+KFIT I+HPNV ++G + H P + + + E W H + +I+ S
Sbjct: 81 PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPE----ERWLPIHTVETIMIS 135
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 111 bits (279), Expect = 1e-29
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL++E + D P G A+P + +W I G + +EGG++ L + P
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
YP PPK +F +FHPNV G +
Sbjct: 74 YPTRPPKCRFTPPLFHPNVYPSGTV 98
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 111 bits (279), Expect = 2e-29
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
L E ++ +P +G + +D +W I GP + YEGG F ++ P YP
Sbjct: 11 ALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYS 70
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PP +F+T+++HPN+ G + H P +E W + +IL S
Sbjct: 71 PPAFRFLTKMWHPNIYETGDVCISILHPPVDDP----QSGELPSERWNPTQNVRTILLS 125
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 109 bits (274), Expect = 3e-29
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL---DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
RL+KE ++ DPP G+ ++ W+ + G + YEG F L + YP
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQNSIT-QWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 271 MHPPKVKFITR--IFHPNVSRHGD 292
P+V F HP+V +G
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGH 108
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 108 bits (273), Expect = 5e-29
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 211 RHFRLRKEYNDIKLDPPDG-IQAQPLDNKRC---HWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + D+ W TI GP S +E ++ L I
Sbjct: 7 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 66
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
+YP PPKV FI++I P V+ P GE+ ++ + W R + + ++L
Sbjct: 67 PNYPDSPPKVTFISKINLPCVN--------PTTGEVQ-TDFHTL--RDWKRAYTMETLLL 115
Query: 327 S 327
Sbjct: 116 D 116
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 110 bits (277), Expect = 6e-29
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL+++Y IK DP I A+PL + W + GP +PYEGG ++ + P +P P
Sbjct: 18 RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP 77
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
P + IT + LS
Sbjct: 78 PSIYMITPNGRFKCNTRLCLS 98
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 109 bits (275), Expect = 9e-29
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 214 RLRKEYNDIKLDPPDGIQAQP----LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSY 269
RL+++ + + L P + D + + I P Y G + Y
Sbjct: 33 RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVY 92
Query: 270 PMHPPKVKFITRIFHPNVSRHG 291
P+ PPKV + +IFHPN+ G
Sbjct: 93 PIEPPKVVCLKKIFHPNIDLKG 114
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 108 bits (273), Expect = 1e-28
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL EY + L+PP+GI A P++ + W A I GP + +E GVF + P YP+
Sbjct: 7 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 66
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK++F +FHPN+ G + HAP + + + + E W + IL S
Sbjct: 67 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSA----ERWSPVQSVEKILLS 121
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 108 bits (271), Expect = 2e-28
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ D + P D + GP +PYE G + L++++P YP
Sbjct: 13 SNRRREMDYMRLCNSTRKVYPSDTVA-EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 71
Query: 274 PKVKFITRIFHPNVS 288
P + F RI HPNV
Sbjct: 72 PSIGFCNRILHPNVD 86
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 107 bits (269), Expect = 4e-28
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL KE + D P GI A P +N W I GP +PY GVF + P YP+
Sbjct: 8 RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 67
Query: 273 PPKVKFITRIFHPNVSRHGD--LS--HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK+ F I HPN+ +G+ +S H+P N+ E W + IL S
Sbjct: 68 PPKLTFTPSILHPNIYPNGEVCISILHSPGDDP----NMYELAEERWSPVQSVEKILLS 122
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 106 bits (267), Expect = 9e-28
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ + + + L+ ++ GP +PYEGGV+ + + +P YP
Sbjct: 29 RMDTDVIKLIESKHEVTILGGLN----EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKS 84
Query: 274 PKVKFITRIFHPNVSR 289
P + F+ +IFHPN+
Sbjct: 85 PSIGFMNKIFHPNIDE 100
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 105 bits (265), Expect = 2e-27
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++K+ N++ L I D+ ++ I P Y+ G F ++ YP P
Sbjct: 30 RIQKDINELNLPKTCDISFSDPDDLL-NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDP 87
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKVK T ++HPN+ G++
Sbjct: 88 PKVKCETMVYHPNIDLEGNV 107
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 104 bits (262), Expect = 3e-27
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 195 HMIRPDTSSLQEDNTWRHFRLRKEYNDI-KLDPPDGIQAQPL---DNKRCHWMATIAGPV 250
H + + R FRL E K + +G+ D +W TI G
Sbjct: 6 HHSSGRENLYFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQP 65
Query: 251 ASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
+ +E ++ L I +YP PP VKF T+I V G
Sbjct: 66 GTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGR 107
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 102 bits (257), Expect = 2e-26
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++K+ N++ L I D+ ++ I P Y+ G F ++ YP P
Sbjct: 10 RIQKDINELNLPKTCDISFSDPDDLL-NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKVK T ++HPN+ G++
Sbjct: 68 PKVKCETMVYHPNIDLEGNV 87
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 97.5 bits (243), Expect = 3e-24
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 214 RLRKEYNDIK---------LDPPDGIQAQPL---DNKRCHWMATIAGPVASPYEGGVFYL 261
R+ KEY I +P GI + W A I+GP +PYE F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 262 YIRIPFSYPMHPPKVKFI-TRIFHPNVS 288
I +P SYPM+PPK+ F+ I H NV
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVK 97
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 94.8 bits (236), Expect = 2e-23
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 214 RLRKEYNDIKLD------------PPDGIQAQPLDNKRCHWMATIAGPVASPY--EGGVF 259
R+ K+ + + P + +W+ + P S Y G +
Sbjct: 12 RIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTY 71
Query: 260 YLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
L + YP PP V+F+T ++ P V+ G
Sbjct: 72 QLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGG 104
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 85.9 bits (212), Expect = 5e-19
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 195 HMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPP----DGIQAQPLDNKRCHWMATIAGPV 250
H + ++ ++ R RL +E + P + + + + I GP
Sbjct: 61 HYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPA 120
Query: 251 ASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-----FHPNVSRHG 291
+PY G F + P YP PP V T F+PN+ G
Sbjct: 121 DTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDG 166
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 73.4 bits (180), Expect = 2e-15
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 15/93 (16%)
Query: 214 RLRKEYNDIKLDPPDGIQ---AQPLDNKRCHWMATIAG-PVASPYEGGV----------- 258
RL KE DI + +++ W + SP +
Sbjct: 31 RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEY 90
Query: 259 FYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG 291
L ++P PP V+ + + G
Sbjct: 91 ILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 8e-10
Identities = 54/322 (16%), Positives = 103/322 (31%), Gaps = 116/322 (36%)
Query: 8 SWNFDFSLTSDEELPVVPARHYVFNAGAAGGGGYHQQDDNHPVPPVRENNLLYDEVDNEL 67
SW F ++ + + +F G ++ N +PP ++L D ++N
Sbjct: 288 SWE-SFFVSVRKAI------TVLFFIGVRC----YEAYPNTSLPP----SILEDSLEN-- 330
Query: 68 EEGDDLPAPQ---NNPDEPELQRRIEELSAYNKNNRAVLTS-QN-------TGGSSIHSL 116
+ +P+P +N + ++Q + + +++ + V S N +G
Sbjct: 331 --NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG------- 381
Query: 117 PPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNW 176
PP+ L Y +L+L +A + DQ +R P + SN
Sbjct: 382 PPQSL-----YGLNLTLRKA-KAPS----------GLDQ------SRIPFSERKLKFSNR 419
Query: 177 YSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKL---DPPDGIQAQ 233
+ L ++P ++ H++ P + + +D + + DI++ D DG +
Sbjct: 420 F-----LPVASPFHS---HLLVPASDLINKDLVKNNVSFNAK--DIQIPVYDTFDGSDLR 469
Query: 234 PLDN------------KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR 281
L W T T
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFK-----------------------------ATH 500
Query: 282 I--FHP-NVSRHGDLSHAPAQG 300
I F P S G L+H G
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDG 522
Score = 55.8 bits (134), Expect = 2e-08
Identities = 77/490 (15%), Positives = 126/490 (25%), Gaps = 209/490 (42%)
Query: 2 FET------ETHSWNFDFSLTSDEELPVVPA----RHYVFNAGAAGGGGYHQQDDNHPVP 51
FE + H+ L + + +V ++Y A P
Sbjct: 91 FENCYLEGNDIHA--LAAKLLQENDTTLVKTKELIKNY-ITARIMA---------KRPFD 138
Query: 52 PVRENNLLYDEVDNELEEGDDLPAP-------QNNPDE--PELQ---------------- 86
+ L + EG+ A Q N D+ EL+
Sbjct: 139 KKSNSALF-----RAVGEGN---AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 87 --RRIEELSA--------YNK--NNRAVLTSQNTGGSSIH------SLPPEVLITVFSYL 128
+ EL + + N L + + + S P LI V
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP---LIGVIQLA 247
Query: 129 DDLSLCSVS-------RACTRWFT------IIADLIS-SDQWRYFVLTRFPLFNSNITVS 174
+ + R+ + T + A I+ +D W F F ITV
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF----FVSVRKAITVL 303
Query: 175 NW-----------YSVYAKLV-------ESTPCY---------TCLQHMIRPDTSSLQED 207
+ S+ ++ E P +Q + S L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 208 --------NTWRHF--------------RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMAT 245
N ++ LRK LD Q+
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-----QS------------- 405
Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHS 305
RIPFS K+KF R F P V+ +P +HS
Sbjct: 406 ------------------RIPFS----ERKLKFSNR-FLP-VA-------SP-----FHS 429
Query: 306 NISSECAETWGRRHRLYSILFSNSIRD-HIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA 364
++ ++ + ++ F+ D I P V D L +S + + I
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAK--DIQI---P-VYDTFDGSDLRVLSGSISE---RIV 480
Query: 365 DLISSDQ--W 372
D I W
Sbjct: 481 DCIIRLPVKW 490
Score = 51.6 bits (123), Expect = 3e-07
Identities = 68/419 (16%), Positives = 131/419 (31%), Gaps = 142/419 (33%)
Query: 49 PVPPVRENNLLYDEVDNELEEG--DDLPAPQNNP---DEP----EL--------QRRIE- 90
VP + + ++L+E LP P DEP EL +E
Sbjct: 21 LVPT----ASFF--IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 91 -ELSAYNKNNRAVLTS-QNT--GGSSIHS----LPPEVLITVF-------SYLDDLSLCS 135
++ +++ LT +N G+ IH+ L E T+ +Y+ +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT--ARIM 132
Query: 136 VSRACTRWFTIIADLISSDQWRYFVLTRFPLF----NSNITVS---NWYSVYAKLVESTP 188
R + + L + L +F N++ + Y Y LV
Sbjct: 133 AKRPFDKKSN--SALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGD-- 186
Query: 189 CYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAG 248
+I+ +L E L + D + G+ W +
Sbjct: 187 -------LIKFSAETLSE--------LIRTTLDAEKVFTQGLNIL-------EW---LEN 221
Query: 249 PVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS------RHGDLSHAPAQGEI 302
P +P YL + IP S P+ + ++ H V+ G+L + +G
Sbjct: 222 PSNTP---DKDYL-LSIPISCPLI-----GVIQLAHYVVTAKLLGFTPGEL-RSYLKGAT 271
Query: 303 YHSN-------ISSECAETW----GRRHRLYSILFSNSIRDHIQRRPRVRFP---LDD-- 346
HS I+ ++W + ++LF +R + + P P L+D
Sbjct: 272 GHSQGLVTAVAIAE--TDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSL 328
Query: 347 ----------LSLCSVSRACTRWFTIIAD--------------LISSDQWRYFVLTRFP 381
LS+ ++++ + L++ + V++ P
Sbjct: 329 ENNEGVPSPMLSISNLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGA--KNLVVSGPP 383
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich
repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A
{Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Length = 53
Score = 52.2 bits (126), Expect = 2e-09
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 106 QNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
+N G S SLP E+L+ +FS L L VS C RW+ + +D
Sbjct: 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45
Score = 26.0 bits (58), Expect = 3.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 344 LDDLSLCSVSRACTRWFTIIAD 365
L L VS C RW+ + +D
Sbjct: 24 LCLPELLKVSGVCKRWYRLASD 45
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 55.1 bits (132), Expect = 1e-08
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 110 GSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNS 169
S++ LP +V + + S+L LC + W + D WRYF+L P ++S
Sbjct: 2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRD---PILWRYFLLRDLPSWSS 58
Score = 31.6 bits (71), Expect = 0.40
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 344 LDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNS 385
L LC + W + D WRYF+L P ++S
Sbjct: 20 LSPHDLCQLGSTNHYWNETVRD---PILWRYFLLRDLPSWSS 58
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 54.9 bits (132), Expect = 1e-08
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 106 QNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
+N G S SLP E+L+ +FS L L VS C RW+ + +D
Sbjct: 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45
Score = 27.9 bits (62), Expect = 6.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 344 LDDLSLCSVSRACTRWFTIIAD 365
L L VS C RW+ + +D
Sbjct: 24 LCLPELLKVSGVCKRWYRLASD 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 1e-06
Identities = 41/286 (14%), Positives = 80/286 (27%), Gaps = 91/286 (31%)
Query: 110 GSSIHSLPPEV------LITVFS--------------YLDDLSLCSVSRACTRWFTIIAD 149
LP EV +++ + +++ L ++ + +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNV 365
Query: 150 LISSDQWRYFV-LTRFPLFNSNITVSN----WYS-------------VYAKLVESTPC-Y 190
L ++ + F L+ FP +++I W+ LVE P
Sbjct: 366 LEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 191 TCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPV 250
T I + E+ H + YN K D + LD
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------------- 471
Query: 251 ASPYEGGVFYLYIRIPFSYPM----HPPKVKFITRIF-------------HPNVSRHGDL 293
Y FY +I + + HP ++ +F + G +
Sbjct: 472 ---Y----FYSHI----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 294 SHAPAQGEIYHSNISSECAETWGRRHRLYSIL-FSNSIRDHIQRRP 338
+ Q + Y I + + +IL F I +++
Sbjct: 521 LNTLQQLKFYKPYICDNDPK---YERLVNAILDFLPKIEENLICSK 563
Score = 31.7 bits (71), Expect = 0.44
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 77/230 (33%)
Query: 202 SSLQEDNTWRHFRLRKE------------------YNDIKLDPPDGI------------- 230
L+ + + ++ E YND ++ +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 231 -QAQPLDNKRCHWMA-----TIAGPVASPYE------GGVFYLYIRIPFSYPMHPPKVKF 278
+ +P N + +A V Y+ +F+L ++
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK----------NCNS 194
Query: 279 ITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRP 338
+ + + SNI + R++SI +R ++ +P
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNI----------KLRIHSI--QAELRRLLKSKP 242
Query: 339 RVR--FPLDDLSLCSVSRA----C-----TRWFTIIADLISSDQWRYFVL 377
L ++ A C TR F + D +S+ + L
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISL 291
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 47.6 bits (113), Expect = 5e-06
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 112 SIHSLPPEVLITVFSYLDDLS-LCSVSRACTRWFTIIADLISS 153
S + +V+ V +Y+ D S S C RWF I ++
Sbjct: 12 SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREH 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 46.4 bits (110), Expect = 1e-05
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 111 SSIHSLPPEVLITVFSYLDDLS-LCSVSRACTRWFTI 146
S P EVL VFS++ SVS C W+ I
Sbjct: 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1;
2.40A {Mus musculus} PDB: 2e32_A
Length = 297
Score = 44.9 bits (105), Expect = 2e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 112 SIHSLPPEVLITVFSYLDDLSLCSVSRA-CTRWFTIIADLISSDQWRYFVLTRFPLFNSN 170
+ LP +L+ V + L L R C RW ++ D + P +++
Sbjct: 50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV-DGAPLWLLKCQQEGLVPEGSAD 108
Query: 171 ITVSNWYSVY 180
+W Y
Sbjct: 109 EERDHWQQFY 118
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 44.6 bits (106), Expect = 3e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
I LP E+ + V S+L+ L ++ C W + D
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED 55
Score = 28.4 bits (64), Expect = 4.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 344 LDDLSLCSVSRACTRWFTIIAD 365
L+ L ++ C W + D
Sbjct: 34 LEPKDLLQAAQTCRYWRILAED 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 43.4 bits (103), Expect = 9e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWR 157
I SLP E+ + +F+YL + + W II S+ W+
Sbjct: 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK--STSLWK 57
Score = 29.1 bits (66), Expect = 2.9
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 344 LDDLSLCSVSRACTRWFTIIADLISSDQWR 373
L + + W II S+ W+
Sbjct: 30 LQFEDIINSLGVSQNWNKIIRK--STSLWK 57
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 40.8 bits (96), Expect = 6e-04
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 113 IHSLPPEVL----ITVFSYLDDLSLCSVSRACTRWFTIIAD-LISSDQWRYFVLT 162
I +LP L + SYLD SLC+ C W+ + +D ++ V T
Sbjct: 11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 65
Score = 29.2 bits (66), Expect = 2.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 344 LDDLSLCSVSRACTRWFTIIAD-LISSDQWRYFVLT 378
LD SLC+ C W+ + +D ++ V T
Sbjct: 30 LDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 65
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 31.8 bits (72), Expect = 0.17
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 243 MATIAGPVASPYEGGVFYLYIRI--PFSYPMHPPKVK-FITRIFHPNVSRHGDLSHAPAQ 299
+ + G + PY G + + I + +YP +PP T +H D A
Sbjct: 53 LMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVD-----AN 107
Query: 300 GEIYHS 305
G+IY
Sbjct: 108 GKIYLP 113
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 31.4 bits (72), Expect = 0.41
Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 103 LTSQNTGG-SSIHSLPPEV----LITVFSYLD 129
L S +T G + + + ++
Sbjct: 41 LLSTHTSGYGTPAVVDLSTWLPQVFAHWTRAQ 72
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase
(THID), thiaminase II, transferase; 2.68A {Saccharomyces
cerevisiae}
Length = 550
Score = 31.6 bits (72), Expect = 0.53
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 103 LTSQNTGG-SSIHSLPPEVL 121
L +Q SI++ P EV+
Sbjct: 60 LNAQTPVKVYSINNTPKEVV 79
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family,
phophorylation, transferase; 2.30A {Salmonella
typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Length = 288
Score = 30.9 bits (71), Expect = 0.55
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 103 LTSQNTGG-SSIHSLPPEV----LITVFS 126
L ++NT G S++ + P+ L +VFS
Sbjct: 63 LVAENTCGVQSVYRIEPDFVAAQLDSVFS 91
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 2.2
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 34 GAAGG---GGYHQQDDNHPVPPVRENNLLYDEVDNELEEGDDLPAPQN 78
GAAG G Q ++ +P N D VD LE+ + + P
Sbjct: 1387 GAAGAWMMNGALQILNSGIIPG----NRNADNVDKILEQFEYVLYPSK 1430
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED
storage protein, allergen; 2.40A {Prunus dulcis} PDB:
3ehk_A
Length = 531
Score = 29.1 bits (64), Expect = 2.9
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 63 VDNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLI 122
+D E+++G PQN+ + + E A+ A + + S + +LP EVL
Sbjct: 439 LDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAFINTLAGRTSFLRALPDEVLA 498
Query: 123 TVF 125
+
Sbjct: 499 NAY 501
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 28.4 bits (64), Expect = 4.3
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 29/107 (27%)
Query: 34 GAAGGGGYHQQDDNH-PVPPVRENNLLYDEVDNELEEGDDLPAPQNNPDEPELQRRIEEL 92
G++ +H P P+ L + L+EGD L+ +EE+
Sbjct: 2 GSSHHHHHHSSGLGVLPGGPLHMEEKLAVSLQEALQEGDT----------RALREVLEEI 51
Query: 93 SAY---------NKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDD 130
+R V+ + LP V S+L
Sbjct: 52 HPQDLLALWDELKGEHRYVV---------LTLLPKAKAAEVLSHLSP 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.6
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 215 LRKEYNDIKLDPPD-----GIQAQ 233
L+K +KL D I+A
Sbjct: 22 LKKLQASLKLYADDSAPALAIKAT 45
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR
{Methanocaldococcus jannaschii} PDB: 2jnq_A
Length = 186
Score = 27.8 bits (61), Expect = 5.3
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 46 DNHPVPPVRENNLLYDEVDNELEEGDDLPAPQNNPDEPELQRRIEELS 93
+HPV + +L + ++ GD + P+NN + ++E +
Sbjct: 101 HDHPVYISKTGEVLEINAE-MVKVGDYIYIPKNNTINLDEVIKVETVD 147
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein,
pisum sativum L., SEED storage protein, storage protein,
plant protein; 2.61A {Pisum sativum}
Length = 496
Score = 28.0 bits (61), Expect = 6.2
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 64 DNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLIT 123
D ELE G L PQN + A+ N+RA + S I++LP +V+
Sbjct: 404 DGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVINNLPLDVVAA 463
Query: 124 VF 125
F
Sbjct: 464 TF 465
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
2evx_A
Length = 459
Score = 28.0 bits (61), Expect = 7.0
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 63 VDNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLI 122
D E+ EG L PQN R E A+ N+ A+ S + LP VL
Sbjct: 367 FDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPLGVLS 426
Query: 123 TVF 125
++
Sbjct: 427 NMY 429
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 27.3 bits (60), Expect = 7.2
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 246 IAGPVASPYEGGVFY---LYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL---SHAPAQ 299
I G +++ +G + + + +P YP+ PP + I + L + +
Sbjct: 67 IYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFI-SINLENFDMNTISSSLPIQEYIDSN 125
Query: 300 GEIYH 304
G I
Sbjct: 126 GWIAL 130
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A
{Arachis hypogaea}
Length = 510
Score = 27.6 bits (60), Expect = 9.4
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 63 VDNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLI 122
D EL+EG L PQN + Q E A+ ++R + + S I +LP EV+
Sbjct: 417 YDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVIDNLPEEVVA 476
Query: 123 TVF 125
+
Sbjct: 477 NSY 479
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.438
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,378,294
Number of extensions: 378955
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 90
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)