RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2846
(392 letters)
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 90.9 bits (225), Expect = 6e-23
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
LR++ ++ +P +G A +D N W I GP + YEGGVF ++ P YP+
Sbjct: 2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPL 61
Query: 272 HPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK+KFIT I+HPNV ++GD+ + + E W H + +I+ S
Sbjct: 62 RPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS 117
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 86.0 bits (212), Expect = 7e-21
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE D+ DPP A P+ + HW ATI GP SPY+GGVF+L I P YP P
Sbjct: 5 RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDL 293
PKV F TRI+HPN++ +G +
Sbjct: 65 PKVAFTTRIYHPNINSNGSI 84
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 85.6 bits (211), Expect = 1e-20
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
L+K+ D++ P DG A +D N W + GP + YEGG F + P YP
Sbjct: 3 LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 62
Query: 272 HPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK+KFI+ I+HPN+ + G++ + E W H + +IL S
Sbjct: 63 KPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLS 118
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 83.9 bits (207), Expect = 3e-20
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPL----DNKRCHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + + DG + L D W I GP + YE ++ L I
Sbjct: 6 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 65
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
YP PP V+F+T+I V+ G + IS W + + +L
Sbjct: 66 PKYPEAPPFVRFVTKINMNGVNSSN--------GVVDPRAIS--VLAKWQNSYSIKVVLQ 115
Query: 327 S 327
Sbjct: 116 E 116
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 81.7 bits (201), Expect = 3e-19
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ +K D P G+ A PL + W A I GP +PYE G F L + YP P
Sbjct: 7 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 66
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
P VKF++ +FHPNV + GEI + + T+ L SI
Sbjct: 67 PHVKFLSEMFHPNVYAN---------GEICLDILQNRWTPTYDVASILTSIQ 109
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 77.9 bits (191), Expect = 6e-18
Identities = 42/113 (37%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++KE +I LDPP A P + W +TI GP S YEGGVF+L I YP P
Sbjct: 6 RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKP 65
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
PKV F TRI+H N++ QG I + + L SI
Sbjct: 66 PKVTFRTRIYHCNINS---------QGVICLDILKDNWSPALTISKVLLSICS 109
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 77.2 bits (189), Expect = 1e-17
Identities = 33/110 (30%), Positives = 52/110 (47%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R RL++E + + +PP GI ++ A I G +PYE GVF L + IP YP
Sbjct: 3 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62
Query: 271 MHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHR 320
PP+++F+T I+HPN+ G + + + S T +
Sbjct: 63 FEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQ 112
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 77.1 bits (189), Expect = 1e-17
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + DP GI A+P D+ ++ TI GP SPYE G+F L + +P YPM
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPN+ R G
Sbjct: 67 PKVRFLTKIYHPNIDRLG 84
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 76.0 bits (186), Expect = 4e-17
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL++E + + GI A P + W+AT+ GP + YE + L + P YP P
Sbjct: 13 RLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP 72
Query: 274 PKVKFITRIFHPNVSRHG 291
P VKF T +HPNV + G
Sbjct: 73 PVVKFTTPCWHPNVDQSG 90
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 74.0 bits (181), Expect = 6e-17
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
+R++KE ++ +PP N W+ G + Y V+ L I P YP+
Sbjct: 1 YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 60
Query: 273 PPKVKFITRI-FHPNVSRHGDL 293
PP V F+ + H +V +GD+
Sbjct: 61 PPIVYFLQKPPKHTHVYSNGDI 82
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 74.4 bits (182), Expect = 9e-17
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL++E + + GI A P + W+ TI G + YE + L + P YP +
Sbjct: 5 RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA 64
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
P VKF+T +HPNV G I + + + + R L SI
Sbjct: 65 PTVKFLTPCYHPNVDTQ---------GNISLDILKEKWSALYDVRTILLSIQ 107
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 74.4 bits (182), Expect = 1e-16
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE + +P GI+A+P ++ ++ IAGP SP+EGG F L + +P YPM
Sbjct: 6 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 65
Query: 274 PKVKFITRIFHPNVSRHG 291
PKV+F+T+I+HPNV + G
Sbjct: 66 PKVRFMTKIYHPNVDKLG 83
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 73.2 bits (179), Expect = 3e-16
Identities = 28/97 (28%), Positives = 42/97 (43%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ KE D++ PP ++ D+ + P PY F L I P YP P
Sbjct: 4 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 63
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSE 310
P +KF T+I+HPNV +G + E + +
Sbjct: 64 PMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTC 100
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 71.6 bits (175), Expect = 5e-16
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 214 RLRKEYNDIKLDPPDGIQAQP--LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
RL+KE ++ DPP G+ + N W+ + G + YEG F L + YP
Sbjct: 7 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66
Query: 272 HPPKVKFITRIF--HPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
P+V F HP+V +G + S E W + S+ S
Sbjct: 67 DSPQVMFTGENIPVHPHVYSNGHICL-------------SILTEDWSPALSVQSVCLS 111
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 72.1 bits (176), Expect = 7e-16
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL+++Y IK DP I A+PL + W + GP +PYEGG ++ + P +P P
Sbjct: 5 RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGE 301
P + IT + LS +
Sbjct: 65 PSIYMITPNGRFKCNTRLCLSITDFHPD 92
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 71.7 bits (175), Expect = 1e-15
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
+ KE + DPPDGI+ P + TI GP +PY GG+F + + + +P P
Sbjct: 10 LVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP 69
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
PK F+T+IFHPNV A GEI + + + G RH L +I
Sbjct: 70 PKGYFLTKIFHPNV---------GANGEICVNVLKRDWTAELGIRHVLLTIK 112
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 71.0 bits (173), Expect = 3e-15
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL KE + D P GI A P +N W I GP +PY GVF + P YP+
Sbjct: 7 RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 66
Query: 273 PPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK+ F I HPN+ +G++ + N+ E W + IL S
Sbjct: 67 PPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 121
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 70.1 bits (171), Expect = 4e-15
Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
L +++ D+K + GI A+P+ W I G S ++G VF L I Y P
Sbjct: 8 LLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP 67
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
P VKFIT FHPNV H E W + L SIL +
Sbjct: 68 PVVKFITIPFHPNVDPHTGQPCIDFLD----------NPEKWNTNYTLSSILLA 111
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 69.3 bits (169), Expect = 5e-15
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 15/121 (12%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQ----AQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIP 266
R+FRL +E + A D W TI GP S +E ++ L I
Sbjct: 5 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 64
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
+YP PPKV FI++I P V+ GE+ W R + + ++L
Sbjct: 65 PNYPDSPPKVTFISKINLPCVNPTT--------GEVQ---TDFHTLRDWKRAYTMETLLL 113
Query: 327 S 327
Sbjct: 114 D 114
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 69.4 bits (169), Expect = 6e-15
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSY 269
R R+ KE +K DP I + + H T GP +PYEGG F + I +P Y
Sbjct: 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 270 PMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
P PPK++F T+++HPN+S + W L S L S
Sbjct: 62 PFKPPKMQFDTKVYHPNISSVT------------GAICLDILKNAWSPVITLKSALIS 107
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 69.0 bits (168), Expect = 7e-15
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
RL +++ ++ DPP G+ P ++ W A I GP +P+E G F L + YP P
Sbjct: 7 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 66
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
P VKFI+++FHPNV A G I + + + T+ L SI
Sbjct: 67 PTVKFISKMFHPNVY---------ADGSICLDILQNRWSPTYDVAAILTSIQS 110
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 68.7 bits (167), Expect = 2e-14
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKR-----CHWMATIAGPVASPYEGGVFYLYIRIPFS 268
RL +E + D P G A P N +W I G +P+EGG+F L +
Sbjct: 6 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 65
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDLSH 295
YP PPK KF +FHPNV G +S
Sbjct: 66 YPSSPPKCKFEPPLFHPNVYPSGTVSL 92
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 67.9 bits (165), Expect = 3e-14
Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 25/127 (19%)
Query: 214 RLRKEYNDIK-------------LDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFY 260
RL KE DI+ G+ AQ + W IAGP+ +PYEGG F
Sbjct: 5 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 64
Query: 261 LYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHR 320
L I IP YP +PPK+KF+T+I+HPN+S + W
Sbjct: 65 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQT------------GAICLDILKHEWSPALT 112
Query: 321 LYSILFS 327
+ + L S
Sbjct: 113 IRTALLS 119
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 66.7 bits (162), Expect = 5e-14
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
RL KE +I+ + +D W I P PY+ G F + I P YP
Sbjct: 3 RLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFK 61
Query: 273 PPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
PPK+ F T+I+HPN+ G + AE W + ++ S
Sbjct: 62 PPKITFKTKIYHPNIDEKG------------QVCLPVISAENWKPATKTDQVIQS 104
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 66.2 bits (161), Expect = 1e-13
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R++K+ N++ L I D+ ++ I P Y+ G F ++ YP P
Sbjct: 7 RIQKDINELNLPKTCDISFSDPDDLL-NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDP 64
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
PKVK T ++HPN+ G + + + + +Y + +
Sbjct: 65 PKVKCETMVYHPNIDLE---------GNVCLNILREDWKPVLTINSIIYGLQY 108
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 65.9 bits (160), Expect = 1e-13
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R+ + + + L+ ++ GP +PYEGGV+ + + +P YP
Sbjct: 7 RMDTDVVKLIESKHEVTILGGLN----EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKS 62
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRH 319
P + F+ +IFHPN+ + + +
Sbjct: 63 PSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQ 108
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 62.9 bits (152), Expect = 1e-12
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 214 RLRKEYNDIKLDPPD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
R+++E+ ++ I+ +D IAGP +PYEGG + L I+IP +YP
Sbjct: 8 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 67
Query: 271 MHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSI 324
+PPKV+FIT+I+HPN+S G I + + A R L S+
Sbjct: 68 FNPPKVRFITKIWHPNISSVT--------GAICLDILKDQWAAAMTLRTVLLSL 113
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 59.7 bits (144), Expect = 2e-11
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
R +Y + P D + GP +PYE G + L++++P YP
Sbjct: 4 RREMDYMRLCNSTRK---VYPSDTVA-EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 59
Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
P + F RI HPNV G + I+ + + L
Sbjct: 60 PSIGFCNRILHPNVD--------ERSGSVCLDVINQTWTPMYQLENIFDVFLPQ 105
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 58.8 bits (142), Expect = 2e-11
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 214 RLRKEYNDIKLDPPD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRI--PFS 268
+E ++ D + + ++ + + G + PY G + + I + +
Sbjct: 18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 77
Query: 269 YPMHPPKVKFIT-----RIFHPNVSRHGDLSH 295
YP +PP +V +G +
Sbjct: 78 YPYNPPICFVKPTSSMTIKTGKHVDANGKIYL 109
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 44.3 bits (105), Expect = 3e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 115 SLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
SLP E+L+ +FS L L VS C RW+ + +D
Sbjct: 3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37
Score = 25.4 bits (56), Expect = 1.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 344 LDDLSLCSVSRACTRWFTIIAD 365
L L VS C RW+ + +D
Sbjct: 16 LCLPELLKVSGVCKRWYRLASD 37
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 47.5 bits (112), Expect = 3e-07
Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 26/129 (20%)
Query: 214 RLRKEYNDIKLDPPDG---IQAQPLDNKRCHWMATIAGP------------VASPYEGGV 258
RL KE DI + +++ W + +
Sbjct: 8 RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEY 67
Query: 259 FYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRR 318
L ++P PP V+ + + + G + ++ + W
Sbjct: 68 ILLNFSFKDNFPFDPPFVRVVLPVLSGG--------YVLGGGALCMELLTKQG---WSSA 116
Query: 319 HRLYSILFS 327
+ + S++
Sbjct: 117 YSIESVIMQ 125
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 45.0 bits (106), Expect = 2e-06
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 14/74 (18%)
Query: 236 DNKRCHWMATIAGPVASPYEGGVFY---LYIRIPFSYPMHPPKVKFITR----------- 281
+ + +I G +++ +G + + + +P YP+ PP +
Sbjct: 48 SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSL 107
Query: 282 IFHPNVSRHGDLSH 295
+ +G ++
Sbjct: 108 PIQEYIDSNGWIAL 121
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 43.5 bits (102), Expect = 2e-06
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
I LP E+ + V S+L+ L ++ C W + D
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED 55
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 100
Score = 41.6 bits (97), Expect = 1e-05
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTR 163
I SLP E+ + +F+YL + + W II S+ W+ +++
Sbjct: 6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK--STSLWKKLLISE 54
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 40.1 bits (93), Expect = 6e-05
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 116 LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRF 164
+ + SYLD SLC+ C W+ + +D W+ +
Sbjct: 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD---GMLWKKLIERMV 63
Score = 26.7 bits (58), Expect = 2.4
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 331 RDHIQRRPRVRFP---------LDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRF 380
RD I P LD SLC+ C W+ + +D W+ +
Sbjct: 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD---GMLWKKLIERMV 63
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 29.8 bits (66), Expect = 0.53
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 59 LYDEVDNE-LEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLP 117
L+ + E L DLP P E ++ + L+A N + GG H +P
Sbjct: 26 LFAHLPKEILSPPIDLPEPL---PEWKVLEELRRLAA---QNLPAHKAFLGGGVRSHHVP 79
Query: 118 P 118
P
Sbjct: 80 P 80
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId:
9913]}
Length = 344
Score = 28.9 bits (64), Expect = 1.1
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPV 250
W R+++ + DG + + + CH V
Sbjct: 217 ADWAKNLKREDFRLL---CLDGTRKPVTEAQSCHLAVAPNHAV 256
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId:
9823]}
Length = 346
Score = 27.4 bits (60), Expect = 3.1
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 199 PDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPV 250
+ + + W + ++ + +G + + + CH V
Sbjct: 207 QQNTDGKNKDDWAKDLKQMDFELL---CQNGAREPVDNAENCHLARAPNHAV 255
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 201
Score = 27.2 bits (60), Expect = 3.2
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 12/69 (17%)
Query: 64 DNELEEGDDLPAPQ-------NNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSL 116
+ G+ P+ N + ++N N ++ T S +
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEA-----YMVVSFNSQNPGIVFVPLTLFGSDPPI 174
Query: 117 PPEVLITVF 125
P VL
Sbjct: 175 PTPVLTKAL 183
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 27.4 bits (60), Expect = 3.5
Identities = 21/153 (13%), Positives = 36/153 (23%), Gaps = 33/153 (21%)
Query: 125 FSYLDDLSLCSVSRACTRWFTI-IADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKL 183
+ L C + T + I + L + F S S KL
Sbjct: 102 WDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHCRFDEF---FSEGCAPGSKKDSSLCKL 158
Query: 184 VESTPCYTC--------------------------LQHMIRPDTSSLQEDNTWRHFRLRK 217
+ C ++H P + + + W K
Sbjct: 159 CMGSGLNLCEPNNKEGYYGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKNLNEK 218
Query: 218 EYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPV 250
+Y + DG + + CH V
Sbjct: 219 DYELL---CLDGTRKPVEEYANCHLARAPNHAV 248
>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon
(Antirrhinum majus) [TaxId: 4151]}
Length = 164
Score = 26.5 bits (58), Expect = 4.3
Identities = 13/78 (16%), Positives = 22/78 (28%)
Query: 195 HMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPY 254
H + P + +R + I DP + P + HW+ T
Sbjct: 34 HELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSS 93
Query: 255 EGGVFYLYIRIPFSYPMH 272
G Y + +H
Sbjct: 94 FGKEVVSYEMPRPNIGIH 111
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A
[TaxId: 556]}
Length = 361
Score = 26.7 bits (58), Expect = 6.0
Identities = 13/76 (17%), Positives = 28/76 (36%)
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
++ V+ + S + +S++ I + + +L+ LF
Sbjct: 172 YTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLF 231
Query: 327 SNSIRDHIQRRPRVRF 342
+N +R PRVR+
Sbjct: 232 NNVFNRVTERAPRVRY 247
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo
(Bubalus arnee bubalis) [TaxId: 89462]}
Length = 333
Score = 26.2 bits (57), Expect = 6.8
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 220 NDIKLDPPDGIQAQPLDNKRCHWMATIAGPV 250
+ +L + +A K CH + V
Sbjct: 225 DQYELLCLNNTRAPVDAFKECHLAQVPSHAV 255
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 25.8 bits (56), Expect = 9.4
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 220 NDIKLDPPDGIQAQPLDNKRCHWMATIAGPV 250
+D +L DG +A +D + C+ V
Sbjct: 230 DDFELLCTDGRRANVMDYRECNLAEVPTHAV 260
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.438
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,611,647
Number of extensions: 78155
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 48
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)