BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2847
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 11 SGAAAISTEL-----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK 65
SG A +S E+ KR+ L I + +G++E A ++ D K VG+ +P + K
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLP-GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAK 377
Query: 66 IVDPDE------EGNGEICLK 80
+VD D GE+C++
Sbjct: 378 VVDLDTGKTLGVNQRGELCVR 398
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 11 SGAAAISTEL-----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK 65
SG A +S E+ KR+ L I + +G++E A ++ D K VG+ +P + K
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLP-GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAK 372
Query: 66 IVDPDE------EGNGEICLK 80
+VD D GE+C++
Sbjct: 373 VVDLDTGKTLGVNQRGELCVR 393
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 11 SGAAAISTEL-----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK 65
SG A +S E+ KR+ L I + +G++E A ++ D K VG+ +P + K
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLP-GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAK 372
Query: 66 IVDPDE------EGNGEICLK 80
+VD D GE+C++
Sbjct: 373 VVDLDTGKTLGVNQRGELCVR 393
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 10 LSGAAAISTELKRYFL--DIAICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGTQTK 65
L G A +S + L ++ I FGM+E + P+ + D VG K
Sbjct: 280 LLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339
Query: 66 IVDPDEEGNGEICLK 80
I +P++EG+GE+ +K
Sbjct: 340 IKNPNKEGHGELMIK 354
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 11 SGAAAISTEL-----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK 65
SG A +S E+ KR+ L I + +G++E A ++ D K VG+ +P + K
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLP-GIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAK 377
Query: 66 IVDPD 70
+VD D
Sbjct: 378 VVDLD 382
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 11 SGAAAISTEL----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKI 66
SG A +S E+ R F + + +G++E A ++ D K G+ +P + K+
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKV 375
Query: 67 VDPDEEGN------GEICLK 80
+D D + + GE+C+K
Sbjct: 376 IDLDTKKSLGPNRRGEVCVK 395
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 11 SGAAAISTEL----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKI 66
SG A +S E+ R F + + +G++E A ++ D K G+ +P + K+
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKV 375
Query: 67 VDPDEEGN------GEICLK 80
+D D + + GE+C+K
Sbjct: 376 IDLDTKKSLGPNRRGEVCVK 395
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 11 SGAAAISTEL----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKI 66
SG A +S E+ R F + + +G++E A ++ D K G+ +P + K+
Sbjct: 316 SGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKV 375
Query: 67 VDPDEEGN------GEICLK 80
+D D + + GE+C+K
Sbjct: 376 IDLDTKKSLGPNRRGEVCVK 395
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 3 LDRCRVSLSGAAAISTELK----RYFLDIAICEVFGMSECAGAHTVS-----APDDFKLD 53
L RV SGAA + EL+ F + + + +GM+E +S P K
Sbjct: 343 LSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSG 402
Query: 54 GVGRTIPGTQTKIVDPD------EEGNGEICLK 80
G + + KIVDPD GEIC++
Sbjct: 403 ACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIR 435
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R+ +SG+A + + R + A+ E +GM+E +T + D ++ G VG +PG
Sbjct: 271 RLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNTSNPYDGDRVPGAVGPALPGV 329
Query: 63 QTKIVDPD 70
++ DP+
Sbjct: 330 SARVTDPE 337
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R+ +SG+A + + R + A+ E +GM+E +T + D ++ G VG +PG
Sbjct: 271 RLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNTSNPYDGDRVPGAVGPALPGV 329
Query: 63 QTKIVDPD 70
++ DP+
Sbjct: 330 SARVTDPE 337
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R+ +SG+A + + R + A+ E +GM+E +T + D ++ G VG +PG
Sbjct: 271 RLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNTSNPYDGDRVPGAVGPALPGV 329
Query: 63 QTKIVDPD 70
++ DP+
Sbjct: 330 SARVTDPE 337
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 3 LDRCRVSLSGAAAISTEL----KRYFLDIAICEVFGMSECAGAHTV-----SAPDDFKLD 53
L R+ SG A + EL + F + + +GM+E + P D K
Sbjct: 296 LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355
Query: 54 GVGRTIPGTQTKIVDPD------EEGNGEICLK 80
G + + KIVDP+ GEIC++
Sbjct: 356 ACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
Length = 493
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 FGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD--PDEEGNGEICLK 80
FG+ C + + FK++ ++ Q ++ PDE G+ +CL+
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLAKKQIWTLEQPPDEAGSAAVCLR 63
>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
Length = 493
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 FGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD--PDEEGNGEICLK 80
FG+ C + + FK++ ++ Q ++ PDE G+ +CL+
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLR 63
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
Length = 493
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 FGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD--PDEEGNGEICLK 80
FG+ C + + FK++ ++ Q ++ PDE G+ +CL+
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLR 63
>pdb|3P53|A Chain A, Structure Of Fascin
pdb|3P53|B Chain B, Structure Of Fascin
Length = 496
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 FGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD--PDEEGNGEICLK 80
FG+ C + + FK++ ++ Q ++ PDE G+ +CL+
Sbjct: 17 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLR 66
>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a
R151a Mutant
pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a
R151a Mutant
Length = 493
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 FGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD--PDEEGNGEICLK 80
FG+ C + + FK++ ++ Q ++ PDE G+ +CL+
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLR 63
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 41 AHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNG 75
A T +AP+ ++L + TIP + DPD G+G
Sbjct: 523 ARTRTAPE-YRLYALAETIPPKPGLVADPDFTGDG 556
>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
Length = 493
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 33 FGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD--PDEEGNGEICLK 80
FG+ C + + FK++ + Q ++ PDE G+ +CL+
Sbjct: 14 FGLINCGNKYLTAEAFGFKVNASASDLKKKQIWTLEQPPDEAGSAAVCLR 63
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 7 RVSLSGAAAISTELKRYFLDIAICEVFGMSECAGAHTVSAPDDF 50
R++ SG ISTE D A C GAHTV AP F
Sbjct: 722 RLARSGLLPISTEEGLSQFDAA---------CGGAHTVVAPVRF 756
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 25.4 bits (54), Expect = 9.7, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 29 ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD 70
+ E +GM+E +V A + + VG +PG + ++V+ D
Sbjct: 300 VIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEED 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,634,084
Number of Sequences: 62578
Number of extensions: 93835
Number of successful extensions: 200
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 23
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)