Query psy2847
Match_columns 83
No_of_seqs 108 out of 1955
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 18:24:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 99.7 7.6E-17 2.6E-21 105.7 8.9 82 2-83 305-396 (550)
2 3etc_A AMP-binding protein; ad 99.7 6E-17 2.1E-21 107.0 8.2 80 2-81 339-426 (580)
3 4fuq_A Malonyl COA synthetase; 99.7 1.8E-16 6.1E-21 103.1 8.3 81 3-83 267-356 (503)
4 3ni2_A 4-coumarate:COA ligase; 99.7 3.6E-16 1.2E-20 102.2 9.2 82 2-83 295-391 (536)
5 3ite_A SIDN siderophore synthe 99.7 3.1E-16 1E-20 102.9 8.4 82 2-83 292-383 (562)
6 2d1s_A Luciferase, luciferin 4 99.7 4.5E-16 1.5E-20 102.1 8.8 82 2-83 307-398 (548)
7 3c5e_A Acyl-coenzyme A synthet 99.6 4.1E-16 1.4E-20 102.8 7.5 79 2-80 320-406 (570)
8 3t5a_A Long-chain-fatty-acid-- 99.6 5.1E-16 1.7E-20 99.8 6.9 81 2-83 309-429 (480)
9 1pg4_A Acetyl-COA synthetase; 99.6 9.7E-16 3.3E-20 102.4 8.2 81 2-82 376-469 (652)
10 2v7b_A Benzoate-coenzyme A lig 99.6 1.2E-15 4.1E-20 99.5 8.2 79 5-83 301-387 (529)
11 4dg8_A PA1221; ANL superfamily 99.6 1.3E-15 4.5E-20 101.4 7.9 81 3-83 275-369 (620)
12 3nyq_A Malonyl-COA ligase; A/B 99.6 3.4E-16 1.2E-20 101.9 4.9 81 3-83 271-362 (505)
13 1amu_A GRSA, gramicidin synthe 99.6 1.8E-15 6.3E-20 99.6 8.2 81 3-83 292-381 (563)
14 1v25_A Long-chain-fatty-acid-C 99.6 1.6E-15 5.6E-20 99.3 7.8 82 2-83 291-392 (541)
15 3l8c_A D-alanine--poly(phospho 99.6 1.2E-15 4.1E-20 99.3 7.0 82 2-83 262-357 (521)
16 3e7w_A D-alanine--poly(phospho 99.6 1.6E-15 5.6E-20 98.6 7.6 81 3-83 259-353 (511)
17 4gr5_A Non-ribosomal peptide s 99.6 1.6E-15 5.4E-20 99.9 7.5 81 3-83 325-418 (570)
18 3g7s_A Long-chain-fatty-acid-- 99.6 2.5E-15 8.7E-20 98.5 8.2 82 2-83 294-392 (549)
19 3fce_A D-alanine--poly(phospho 99.6 3.2E-15 1.1E-19 97.2 7.9 82 2-83 259-354 (512)
20 3ipl_A 2-succinylbenzoate--COA 99.6 1.1E-15 3.7E-20 99.1 5.6 79 5-83 275-357 (501)
21 3tsy_A Fusion protein 4-coumar 99.6 4.4E-15 1.5E-19 102.6 8.1 82 2-83 342-438 (979)
22 1ry2_A Acetyl-coenzyme A synth 99.6 6.1E-15 2.1E-19 98.8 8.3 81 2-82 382-478 (663)
23 3r44_A Fatty acyl COA syntheta 99.6 4.4E-15 1.5E-19 96.8 7.3 82 2-83 282-371 (517)
24 3gqw_A Fatty acid AMP ligase; 99.6 1.1E-14 3.8E-19 95.3 7.7 82 2-83 297-420 (576)
25 3o83_A Peptide arylation enzym 99.6 2.9E-15 9.9E-20 98.2 4.6 81 3-83 306-396 (544)
26 1mdb_A 2,3-dihydroxybenzoate-A 99.5 5.2E-15 1.8E-19 96.9 5.4 81 2-83 296-387 (539)
27 1t5h_X 4-chlorobenzoyl COA lig 99.5 5.8E-14 2E-18 91.2 8.4 78 2-82 270-359 (504)
28 3kxw_A Saframycin MX1 syntheta 99.5 3E-14 1E-18 93.7 6.4 80 2-83 287-408 (590)
29 3rg2_A Enterobactin synthase c 99.5 3.3E-14 1.1E-18 94.4 5.9 82 2-83 300-391 (617)
30 3qov_A Phenylacetate-coenzyme 99.5 1.5E-13 5E-18 87.9 8.3 77 3-82 205-291 (436)
31 2vsq_A Surfactin synthetase su 99.5 5.4E-14 1.9E-18 99.5 6.7 80 4-83 720-812 (1304)
32 3hgu_A EHPF; phenazine, antibi 99.5 5.7E-14 1.9E-18 88.2 5.8 74 3-81 230-320 (369)
33 4gs5_A Acyl-COA synthetase (AM 99.5 7.7E-14 2.6E-18 87.8 5.3 75 3-82 147-223 (358)
34 3ivr_A Putative long-chain-fat 99.4 2.7E-13 9.1E-18 88.1 5.4 77 3-83 271-356 (509)
35 2y27_A Phenylacetate-coenzyme 99.4 1.2E-12 4.1E-17 83.7 8.2 78 3-82 209-296 (437)
36 2y4o_A Phenylacetate-coenzyme 99.4 9.9E-13 3.4E-17 84.2 7.8 78 3-82 211-298 (443)
37 4eql_A 4-substituted benzoates 76.8 8.8 0.0003 26.1 5.9 34 6-39 302-337 (581)
38 4epl_A Jasmonic acid-amido syn 67.1 21 0.00072 24.3 6.0 33 7-39 308-342 (581)
39 1rvg_A Fructose-1,6-bisphospha 44.7 18 0.0006 22.6 2.6 33 6-38 203-237 (305)
40 4b2g_A GH3-1 auxin conjugating 41.8 83 0.0028 21.6 6.5 34 6-39 307-342 (609)
41 3n9r_A Fructose-bisphosphate a 36.7 23 0.00079 22.1 2.2 32 7-38 206-239 (307)
42 2isw_A Putative fructose-1,6-b 35.0 27 0.00094 22.0 2.4 33 6-38 205-239 (323)
43 2vd2_A ATP phosphoribosyltrans 28.4 26 0.00089 20.7 1.4 19 25-43 132-150 (214)
44 2vd3_A ATP phosphoribosyltrans 25.9 50 0.0017 20.5 2.4 20 25-44 135-154 (289)
45 1ve4_A ATP phosphoribosyltrans 25.6 29 0.00099 20.4 1.3 27 18-44 116-147 (206)
46 1z7m_E ATP phosphoribosyltrans 25.3 26 0.0009 20.6 1.0 26 19-44 119-149 (208)
47 1o63_A ATP phosphoribosyltrans 22.5 30 0.001 20.5 1.0 27 18-44 111-142 (219)
48 2xet_A CAF1A usher, F1 capsule 21.2 76 0.0026 15.5 2.2 9 73-81 36-44 (89)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.70 E-value=7.6e-17 Score=105.67 Aligned_cols=82 Identities=27% Similarity=0.458 Sum_probs=70.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCe-EecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIA-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~-~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~ 71 (83)
++++||.+++||+++++++.+++ ++.. +++.||+||++..+........+.+++|+|+++++++++|++ .
T Consensus 305 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~ 384 (550)
T 3rix_A 305 DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 384 (550)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCT
T ss_pred CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCC
Confidence 47899999999999999999998 6654 889999999998777666555677899999999999999965 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++||+
T Consensus 385 g~~GEl~v~g~~ 396 (550)
T 3rix_A 385 NQRGELCVRGPM 396 (550)
T ss_dssp TCCEEEEEESTT
T ss_pred CCCeEEEEeCCC
Confidence 788999999974
No 2
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.70 E-value=6e-17 Score=107.02 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=70.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++||.+++||+++++++.++| ++..+++.||+||++..++..+....+.+++|+|+++++++|+|++ .|+
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~ 418 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE 418 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCC
Confidence 46899999999999999999998 6899999999999987666555444677899999999999999987 478
Q ss_pred cceEEEec
Q psy2847 74 NGEICLKD 81 (83)
Q Consensus 74 ~Gei~~~~ 81 (83)
.|||++++
T Consensus 419 ~GEl~v~~ 426 (580)
T 3etc_A 419 EGEIVINT 426 (580)
T ss_dssp CEEEEEEC
T ss_pred ceEEEEec
Confidence 99999986
No 3
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.68 E-value=1.8e-16 Score=103.10 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=67.8
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g~ 73 (83)
++++|.+++||+++++++.++| ++..+++.||+||++..+..........+++|+|+++++++++|++ .|+
T Consensus 267 ~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~ 346 (503)
T 4fuq_A 267 TGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGD 346 (503)
T ss_dssp TTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTC
T ss_pred hhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCC
Confidence 5789999999999999999998 6889999999999986644333233567889999999999999943 478
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++||+
T Consensus 347 ~GEl~v~g~~ 356 (503)
T 4fuq_A 347 IGMIEVKGPN 356 (503)
T ss_dssp CEEEEEESTT
T ss_pred ceEEEEECCc
Confidence 8999999974
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.67 E-value=3.6e-16 Score=102.23 Aligned_cols=82 Identities=28% Similarity=0.485 Sum_probs=68.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecC-----CCCcccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSA-----PDDFKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~-----~~~~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
++++||.+++||+++++++.+++ + +..+++.||+||++.+++... ....+.+++|+|+++++++++|++
T Consensus 295 ~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~ 374 (536)
T 3ni2_A 295 DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG 374 (536)
T ss_dssp CCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTC
T ss_pred CCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCC
Confidence 46889999999999999999988 5 889999999999987655431 112466889999999999999954
Q ss_pred ----CCCcceEEEecCC
Q psy2847 71 ----EEGNGEICLKDLI 83 (83)
Q Consensus 71 ----~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||.
T Consensus 375 ~~~~~g~~GEl~v~g~~ 391 (536)
T 3ni2_A 375 ASLPRNQPGEICIRGDQ 391 (536)
T ss_dssp CBCCTTCCEEEEEESTT
T ss_pred cCCCCCCccEEEEeCcc
Confidence 4788999999874
No 5
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.66 E-value=3.1e-16 Score=102.88 Aligned_cols=82 Identities=12% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCC-CCcccCceecCcCCcEEEEECCC------C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPD------E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~g~p~~~~~~~v~d~~------~ 71 (83)
++++||.+++||+++++++.++| ++..+++.||+||++..+..... ......++|+|+++++++++|++ .
T Consensus 292 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 292 DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 36789999999999999999998 58899999999999866554332 23456789999999999999965 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++||+
T Consensus 372 g~~GEl~v~g~~ 383 (562)
T 3ite_A 372 GMAGELVIEGSL 383 (562)
T ss_dssp TSCEEEEEESTT
T ss_pred CCceEEEEeccc
Confidence 678999999974
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.66 E-value=4.5e-16 Score=102.14 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=68.9
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~ 71 (83)
+++++|.+++||+++++++.+++ + +..+++.||+||++..+........+.+++|+|+++++++++|++ .
T Consensus 307 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~ 386 (548)
T 2d1s_A 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGP 386 (548)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCT
T ss_pred cccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCC
Confidence 46789999999999999999988 5 678999999999987766544333567889999999999999943 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++||+
T Consensus 387 g~~GEl~v~g~~ 398 (548)
T 2d1s_A 387 NRRGEVCVKGPM 398 (548)
T ss_dssp TCCEEEEEESTT
T ss_pred CCCeEEEECCHH
Confidence 788999999974
No 7
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.65 E-value=4.1e-16 Score=102.84 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=67.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
+++++|.+++||+++++++.++| ++..+++.||+||++..+........+.+++|+|+++++++|+|++ .|+
T Consensus 320 ~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~ 399 (570)
T 3c5e_A 320 KFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT 399 (570)
T ss_dssp CCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTC
T ss_pred ccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCCC
Confidence 46789999999999999999988 6889999999999986655443333566889999999999999976 478
Q ss_pred cceEEEe
Q psy2847 74 NGEICLK 80 (83)
Q Consensus 74 ~Gei~~~ 80 (83)
.|||+++
T Consensus 400 ~GEl~v~ 406 (570)
T 3c5e_A 400 EGDIGIR 406 (570)
T ss_dssp CEEEEEE
T ss_pred CCeeEEe
Confidence 8999998
No 8
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.64 E-value=5.1e-16 Score=99.84 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=65.9
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC------CeEecccCccccccceeecCCCC-----------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD------IAICEVFGMSECAGAHTVSAPDD----------------------- 49 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~------~~~~~~yG~tE~~~~~~~~~~~~----------------------- 49 (83)
++++||.+++||+++++++.+++ ++ ..+++.||+||++..++......
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 46899999999999999999988 42 36999999999987766543321
Q ss_pred --cccCceecCcCCcEEEEECCC------CCCcceEEEecCC
Q psy2847 50 --FKLDGVGRTIPGTQTKIVDPD------EEGNGEICLKDLI 83 (83)
Q Consensus 50 --~~~~~~g~p~~~~~~~v~d~~------~g~~Gei~~~~~~ 83 (83)
.+..++|+|++ ++++|+|++ .|+.|||+++||+
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~ 429 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDN 429 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTT
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCc
Confidence 23457999999 999999976 4788999999974
No 9
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.63 E-value=9.7e-16 Score=102.39 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=67.8
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC---CeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCC---
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD---IAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~---~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++||.+++||+++++++.+++ ++ ..+++.||+||++..+...... ..+.+++|+|+++++++|+|++
T Consensus 376 ~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~ 455 (652)
T 1pg4_A 376 DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHP 455 (652)
T ss_dssp CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCB
T ss_pred CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCC
Confidence 47899999999999999999988 56 8899999999998765544322 2567899999999999999976
Q ss_pred --CCCcceEEEecC
Q psy2847 71 --EEGNGEICLKDL 82 (83)
Q Consensus 71 --~g~~Gei~~~~~ 82 (83)
.|+.|||++++|
T Consensus 456 v~~g~~GEl~i~g~ 469 (652)
T 1pg4_A 456 QEGATEGNLVITDS 469 (652)
T ss_dssp CCSSEEEEEEECSC
T ss_pred cCCCceEEEEEccC
Confidence 367899999994
No 10
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.63 E-value=1.2e-15 Score=99.50 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=67.4
Q ss_pred ceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCCcce
Q psy2847 5 RCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEGNGE 76 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~~Ge 76 (83)
++|.+++||+++++++.+++ ++..+++.||+||++.++..........+++|+|+++++++++|++ .|+.||
T Consensus 301 ~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GE 380 (529)
T 2v7b_A 301 AIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGD 380 (529)
T ss_dssp CCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccE
Confidence 69999999999999999998 6889999999999976655544333566789999999999999976 478899
Q ss_pred EEEecCC
Q psy2847 77 ICLKDLI 83 (83)
Q Consensus 77 i~~~~~~ 83 (83)
|+++||+
T Consensus 381 l~v~g~~ 387 (529)
T 2v7b_A 381 LYIKGPS 387 (529)
T ss_dssp EEEECTT
T ss_pred EEEecCC
Confidence 9999974
No 11
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.62 E-value=1.3e-15 Score=101.43 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=66.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh----cCCeEecccCccccccceeecCCCC----cccCceecCcCCcEEEEECCC----
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF----LDIAICEVFGMSECAGAHTVSAPDD----FKLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~----~~~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~g~p~~~~~~~v~d~~---- 70 (83)
+++||.+++||++++++..+++ .+..++|.||+||++.+++...... ....++|+|+++++++|+|++
T Consensus 275 l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~ 354 (620)
T 4dg8_A 275 LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEI 354 (620)
T ss_dssp GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBC
T ss_pred CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCC
Confidence 5789999999999998888877 4789999999999987654332211 345689999999999999976
Q ss_pred --CCCcceEEEecCC
Q psy2847 71 --EEGNGEICLKDLI 83 (83)
Q Consensus 71 --~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|+.
T Consensus 355 ~~~g~~GEl~i~G~~ 369 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAG 369 (620)
T ss_dssp CSSSCCEEEEEEETT
T ss_pred CCCCCceEEEEeccc
Confidence 3678999999874
No 12
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.62 E-value=3.4e-16 Score=101.89 Aligned_cols=81 Identities=27% Similarity=0.405 Sum_probs=66.0
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC--------C
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD--------E 71 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~--------~ 71 (83)
++++|.+++||+++++++.+++ ++..+++.||+||++..+..........+++|+|+++++++++|++ +
T Consensus 271 l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~ 350 (505)
T 3nyq_A 271 LAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDG 350 (505)
T ss_dssp HHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCS
T ss_pred cccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCC
Confidence 3568999999999999999988 6889999999999987665554444567889999999999999976 1
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++||+
T Consensus 351 g~~GEl~v~g~~ 362 (505)
T 3nyq_A 351 ESVGEIQVRGPN 362 (505)
T ss_dssp CCCEEEEEESTT
T ss_pred CceEEEEEecCc
Confidence 688999999974
No 13
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.62 E-value=1.8e-15 Score=99.62 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=66.8
Q ss_pred CCceEEEEEecCCCCHHHHHHh-cCCeEecccCccccccceeecCCCC---cccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF-LDIAICEVFGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~-~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.+++||+++++++.++| ....+++.||+||++.+++...... .+..++|+|+++++++|+|++ .|+
T Consensus 292 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~ 371 (563)
T 1amu_A 292 ILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE 371 (563)
T ss_dssp CCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred cccccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCC
Confidence 4689999999999999999999 5578999999999986655432211 345689999999999999976 478
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++||+
T Consensus 372 ~GEl~v~g~~ 381 (563)
T 1amu_A 372 AGELCIGGEG 381 (563)
T ss_dssp EEEEEEEETT
T ss_pred cEEEEEechh
Confidence 8999999974
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.61 E-value=1.6e-15 Score=99.28 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=67.8
Q ss_pred CCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC-----------cccCceecCcCCcEEEEEC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIVD 68 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~-----------~~~~~~g~p~~~~~~~v~d 68 (83)
++++||.+++||+++++++.+++ ++.++++.||+||++.+++...... ...+++|+|+++++++|+|
T Consensus 291 ~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 370 (541)
T 1v25_A 291 RLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD 370 (541)
T ss_dssp CCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC
T ss_pred cchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC
Confidence 46789999999999999999998 7899999999999987766543320 2357899999999999999
Q ss_pred CCC-------CCcceEEEecCC
Q psy2847 69 PDE-------EGNGEICLKDLI 83 (83)
Q Consensus 69 ~~~-------g~~Gei~~~~~~ 83 (83)
+++ ++.|||+++||+
T Consensus 371 ~~g~~~~~~~~~~GEl~v~g~~ 392 (541)
T 1v25_A 371 EEGRPVPKDGKALGEVQLKGPW 392 (541)
T ss_dssp TTSCBCCSSSCCCEEEEEESTT
T ss_pred CCCCCCCCCCCcceEEEEeCcc
Confidence 762 257999999974
No 15
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.61 E-value=1.2e-15 Score=99.29 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=67.6
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCC-----cccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDD-----FKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~-----~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
+++++|.++++|+++++++.+++ + +..+++.||+||++..++...... ....++|+|+++++++++|++
T Consensus 262 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~ 341 (521)
T 3l8c_A 262 KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGK 341 (521)
T ss_dssp TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSC
T ss_pred cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcC
Confidence 36789999999999999999988 4 889999999999987655432211 345679999999999999986
Q ss_pred ---CCCcceEEEecCC
Q psy2847 71 ---EEGNGEICLKDLI 83 (83)
Q Consensus 71 ---~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||+
T Consensus 342 ~~~~g~~GEl~v~g~~ 357 (521)
T 3l8c_A 342 ELSSGEQGEIIVTGPA 357 (521)
T ss_dssp BCCTTCCEEEEEESTT
T ss_pred CCCCCCceEEEecccc
Confidence 4788999999974
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.61 E-value=1.6e-15 Score=98.59 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC-----CcccCceecCcCCcEEEEECCC---
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~-----~~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++|.++++|+++++++.+++ + +..+++.||+||++..++..... .....++|+|.++++++++|++
T Consensus 259 ~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~ 338 (511)
T 3e7w_A 259 LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQP 338 (511)
T ss_dssp CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCB
T ss_pred CCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCC
Confidence 5789999999999999999988 4 78999999999998765543221 1345679999999999999986
Q ss_pred --CCCcceEEEecCC
Q psy2847 71 --EEGNGEICLKDLI 83 (83)
Q Consensus 71 --~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||+
T Consensus 339 ~~~g~~GEl~v~g~~ 353 (511)
T 3e7w_A 339 LPEGEKGEIVIAGPS 353 (511)
T ss_dssp CCTTCCEEEEEESTT
T ss_pred CCCCCceEEEEecCc
Confidence 4788999999974
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.61 E-value=1.6e-15 Score=99.88 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC----CcccCceecCcCCcEEEEECCC----
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~g~p~~~~~~~v~d~~---- 70 (83)
+++||.+++||++++++..+++ + +..+++.||+||++.+++..... .....++|+|+++++++|+|++
T Consensus 325 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~ 404 (570)
T 4gr5_A 325 FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPA 404 (570)
T ss_dssp GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBC
T ss_pred CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCC
Confidence 5789999999999999888887 3 78999999999998765543221 1334569999999999999976
Q ss_pred -CCCcceEEEecCC
Q psy2847 71 -EEGNGEICLKDLI 83 (83)
Q Consensus 71 -~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||+
T Consensus 405 ~~G~~GEl~v~g~~ 418 (570)
T 4gr5_A 405 ANGALGELYVAGAG 418 (570)
T ss_dssp CTTCEEEEEEEETT
T ss_pred CCCCcEEEEEeecc
Confidence 4788999999974
No 18
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.61 E-value=2.5e-15 Score=98.45 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=68.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh-------cC---CeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEEC-C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF-------LD---IAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVD-P 69 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~-------~~---~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d-~ 69 (83)
+++++|.+++||+++++++.+++ ++ ..+++.||+||++.+++...... .+..++|+|+++++++|+| +
T Consensus 294 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 373 (549)
T 3g7s_A 294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLE 373 (549)
T ss_dssp CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSS
T ss_pred CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCC
Confidence 46789999999999999998887 24 78999999999988766654433 4567899999999999999 4
Q ss_pred C-----CCCcceEEEecCC
Q psy2847 70 D-----EEGNGEICLKDLI 83 (83)
Q Consensus 70 ~-----~g~~Gei~~~~~~ 83 (83)
+ .|+.|||+++||+
T Consensus 374 ~g~~~~~g~~GEl~v~g~~ 392 (549)
T 3g7s_A 374 DGRELGVGESGEIVIRGPN 392 (549)
T ss_dssp SCCEECTTCCEEEEEESTT
T ss_pred CCcCCCCCCceEEEEECcc
Confidence 3 4789999999974
No 19
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.60 E-value=3.2e-15 Score=97.19 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCC-----cccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDD-----FKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~-----~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
+++++|.++++|+++++++.+++ + +..+++.||+||++..++...... ....++|+|.++++++++|++
T Consensus 259 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~ 338 (512)
T 3fce_A 259 MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGT 338 (512)
T ss_dssp TSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSC
T ss_pred hCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCC
Confidence 36789999999999999999988 4 789999999999987655433221 345679999999999999976
Q ss_pred ---CCCcceEEEecCC
Q psy2847 71 ---EEGNGEICLKDLI 83 (83)
Q Consensus 71 ---~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||+
T Consensus 339 ~~~~g~~GEl~v~g~~ 354 (512)
T 3fce_A 339 IAPDGEKGEIVIVGPS 354 (512)
T ss_dssp BCCTTSCEEEEEESTT
T ss_pred CCCCCCeEEEEEeccc
Confidence 4789999999974
No 20
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.60 E-value=1.1e-15 Score=99.09 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=67.3
Q ss_pred ceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCCCCCcceEEEe
Q psy2847 5 RCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 80 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~~g~~Gei~~~ 80 (83)
++|.+++||+++++++.+++ ++.++++.||+||++..+....... .+.+++|+|+++++++++|++.++.|||+++
T Consensus 275 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~ 354 (501)
T 3ipl_A 275 NLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIK 354 (501)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEE
T ss_pred cccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEe
Confidence 79999999999999999988 7889999999999976554433221 4567899999999999999988889999999
Q ss_pred cCC
Q psy2847 81 DLI 83 (83)
Q Consensus 81 ~~~ 83 (83)
|+.
T Consensus 355 g~~ 357 (501)
T 3ipl_A 355 GAN 357 (501)
T ss_dssp STT
T ss_pred ccc
Confidence 974
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.59 E-value=4.4e-15 Score=102.57 Aligned_cols=82 Identities=32% Similarity=0.511 Sum_probs=68.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecC-----CCCcccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSA-----PDDFKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~-----~~~~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
++++||.+++||+++++++.+++ + +..+++.||+||++.+++... ....+.+++|+|+++++++|+|++
T Consensus 342 ~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~ 421 (979)
T 3tsy_A 342 DLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG 421 (979)
T ss_dssp CCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSC
T ss_pred CccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCC
Confidence 47899999999999999999988 4 789999999999987655431 112456789999999999999965
Q ss_pred ----CCCcceEEEecCC
Q psy2847 71 ----EEGNGEICLKDLI 83 (83)
Q Consensus 71 ----~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||.
T Consensus 422 ~~~~~g~~GEl~i~g~~ 438 (979)
T 3tsy_A 422 DSLSRNQPGEICIRGHQ 438 (979)
T ss_dssp CBCCTTCCEEEEEESTT
T ss_pred CCCCCCCccEEEEECCC
Confidence 4788999999974
No 22
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.58 E-value=6.1e-15 Score=98.80 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=67.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC---CeEecccCccccccceeecCC---CCcccCceecCcCCcEEEEECC-C-
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD---IAICEVFGMSECAGAHTVSAP---DDFKLDGVGRTIPGTQTKIVDP-D- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~---~~~~~~yG~tE~~~~~~~~~~---~~~~~~~~g~p~~~~~~~v~d~-~- 70 (83)
++++||.++++|+++++++.+++ ++ ..+++.||+||++..+..... ...+.+++|+|+++++++|+|+ +
T Consensus 382 ~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g 461 (663)
T 1ry2_A 382 SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTG 461 (663)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSST
T ss_pred CcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCC
Confidence 47899999999999999999988 55 789999999999866554432 2256789999999999999998 4
Q ss_pred ----C-CCcceEEEecC
Q psy2847 71 ----E-EGNGEICLKDL 82 (83)
Q Consensus 71 ----~-g~~Gei~~~~~ 82 (83)
. ++.|||++++|
T Consensus 462 ~~v~~~g~~Gel~i~g~ 478 (663)
T 1ry2_A 462 EELNTSHAEGVLAVKAA 478 (663)
T ss_dssp TCEECSSCEEEEEESSC
T ss_pred CcCCCCCcceEEEEecC
Confidence 2 67899999985
No 23
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.58 E-value=4.4e-15 Score=96.82 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=68.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCCC----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDE----EG 73 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~~----g~ 73 (83)
+++++|.+++||+++++++.+++ .+..+++.||+||++..++..... ..+.+++|+|.++++++++|+++ ..
T Consensus 282 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g 361 (517)
T 3r44_A 282 DAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG 361 (517)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE
T ss_pred CCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC
Confidence 56789999999999999999998 688999999999998766544332 25668899999999999999762 22
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++||.
T Consensus 362 ~GEl~v~g~~ 371 (517)
T 3r44_A 362 EGEVVIKSDI 371 (517)
T ss_dssp EEEEEEEETT
T ss_pred CeEEEEeCcc
Confidence 7999999974
No 24
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.56 E-value=1.1e-14 Score=95.33 Aligned_cols=82 Identities=26% Similarity=0.353 Sum_probs=66.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c------CCeEecccCccccccceeecCCCC-----------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L------DIAICEVFGMSECAGAHTVSAPDD----------------------- 49 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~------~~~~~~~yG~tE~~~~~~~~~~~~----------------------- 49 (83)
+++++|.+++||+++++++.+++ + +..+++.||+||++.+++......
T Consensus 297 ~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (576)
T 3gqw_A 297 DLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGA 376 (576)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCT
T ss_pred ChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCc
Confidence 47889999999999999999988 3 678999999999987766543211
Q ss_pred -----cccCceecCcCCcEEEEECCC-----CCCcceEEEecCC
Q psy2847 50 -----FKLDGVGRTIPGTQTKIVDPD-----EEGNGEICLKDLI 83 (83)
Q Consensus 50 -----~~~~~~g~p~~~~~~~v~d~~-----~g~~Gei~~~~~~ 83 (83)
....++|+|+++++++|+|++ .|+.|||+++||.
T Consensus 377 ~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~ 420 (576)
T 3gqw_A 377 ETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISGPS 420 (576)
T ss_dssp TCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEESTT
T ss_pred cccCccceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeCcc
Confidence 011278999999999999976 4788999999974
No 25
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.55 E-value=2.9e-15 Score=98.18 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=65.6
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCc-CCcEEEEECCC-----CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTI-PGTQTKIVDPD-----EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~-~~~~~~v~d~~-----~g 72 (83)
+++||.+++||+++++++.+++ ++..+++.||+||++..+....... ....++|+|+ ++.+++++|++ .|
T Consensus 306 ~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g 385 (544)
T 3o83_A 306 IQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEG 385 (544)
T ss_dssp HTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTT
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCC
Confidence 4689999999999999999988 6899999999999875433322221 3456799996 89999999976 47
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||+++||+
T Consensus 386 ~~GEl~v~g~~ 396 (544)
T 3o83_A 386 EIGMLATRGPY 396 (544)
T ss_dssp CCEEEEEECTT
T ss_pred CeeEEEEecCC
Confidence 88999999974
No 26
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.55 E-value=5.2e-15 Score=96.89 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=64.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC--cccCceecCcCCc-EEEEECCC-----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGT-QTKIVDPD----- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~-~~~v~d~~----- 70 (83)
++++||.+++||+++++++.+++ ++..+++.||+||++.. ....... ...+++|+|+++. +++++|++
T Consensus 296 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~-~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~ 374 (539)
T 1mdb_A 296 DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVN-YTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374 (539)
T ss_dssp CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEE-ECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCC
T ss_pred CccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCccc-ccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCc
Confidence 46899999999999999999988 78899999999996533 2222111 3456899999754 89999976
Q ss_pred CCCcceEEEecCC
Q psy2847 71 EEGNGEICLKDLI 83 (83)
Q Consensus 71 ~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||+
T Consensus 375 ~g~~GEl~v~g~~ 387 (539)
T 1mdb_A 375 PGETGHLLTRGPY 387 (539)
T ss_dssp TTCCEEEEEECTT
T ss_pred CCCcceEEeeCcc
Confidence 4788999999974
No 27
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.52 E-value=5.8e-14 Score=91.21 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=64.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC--------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-------- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-------- 70 (83)
++++||.+++||+++++++.+++ ++..+++.||+||+. .+.... ..+.+++|+|.++++++++|++
T Consensus 270 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~ 346 (504)
T 1t5h_X 270 KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVA 346 (504)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCC
T ss_pred cCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--CCCCCccccCCCCCceeEEeccCCCCCcCC
Confidence 46789999999999999999998 688899999999994 332221 2456789999999999999864
Q ss_pred CCCcceEEEe-cC
Q psy2847 71 EEGNGEICLK-DL 82 (83)
Q Consensus 71 ~g~~Gei~~~-~~ 82 (83)
.|+.|||+++ ++
T Consensus 347 ~g~~GEl~v~gg~ 359 (504)
T 1t5h_X 347 NGEEGELIVAASD 359 (504)
T ss_dssp TTCCEEEEEECCT
T ss_pred CCCcceEEEeCCc
Confidence 3678999999 65
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.51 E-value=3e-14 Score=93.69 Aligned_cols=80 Identities=28% Similarity=0.421 Sum_probs=62.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c------CCeEecccCccccccceeecCCC------------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L------DIAICEVFGMSECAGAHTVSAPD------------------------ 48 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~------~~~~~~~yG~tE~~~~~~~~~~~------------------------ 48 (83)
+++++|.+++||+++++++.+++ + +..+++.||+||++.+++.....
T Consensus 287 ~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (590)
T 3kxw_A 287 DLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDN 366 (590)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTT
T ss_pred CchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCC
Confidence 57899999999999999999988 3 23699999999998776543211
Q ss_pred ---CcccCceecCcCCcEEEEECCC------CCCcceEEEecCC
Q psy2847 49 ---DFKLDGVGRTIPGTQTKIVDPD------EEGNGEICLKDLI 83 (83)
Q Consensus 49 ---~~~~~~~g~p~~~~~~~v~d~~------~g~~Gei~~~~~~ 83 (83)
.....++|+|+++ ++|+|++ .|+.|||+++||+
T Consensus 367 ~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~ 408 (590)
T 3kxw_A 367 SPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNS 408 (590)
T ss_dssp CTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTT
T ss_pred CCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCc
Confidence 1234678999988 7888876 4678999999974
No 29
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.49 E-value=3.3e-14 Score=94.38 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=65.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCc-CCcEEEEECCC-----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTI-PGTQTKIVDPD-----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~-~~~~~~v~d~~-----~ 71 (83)
+++++|.+++||+++++++.+++ ++..+++.||+||++..+....... ....++|+|+ ++.++.++|++ .
T Consensus 300 ~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~ 379 (617)
T 3rg2_A 300 QLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQ 379 (617)
T ss_dssp TTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCT
T ss_pred cCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCC
Confidence 46789999999999999999998 6889999999999875443322211 2345789997 78899999976 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++||.
T Consensus 380 G~~GEl~i~G~~ 391 (617)
T 3rg2_A 380 GEVGRLMTRGPY 391 (617)
T ss_dssp TCCEEEEEECSS
T ss_pred CCceEEEecCcc
Confidence 789999999974
No 30
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.49 E-value=1.5e-13 Score=87.91 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=61.9
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccc-eeecCCCCcccCceecCcCCcEEEEECCC------CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGA-HTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~-~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g 72 (83)
++++|.+++||+++++++.+++ ++..+++.||+||+++. +..... .....+.|.+++.++++|++ .|
T Consensus 205 ~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g 281 (436)
T 3qov_A 205 ETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEG 281 (436)
T ss_dssp SSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTT
T ss_pred cCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCC
Confidence 5789999999999999999998 69999999999999544 333321 12347788889999999954 47
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||++++.
T Consensus 282 ~~Gel~v~~~ 291 (436)
T 3qov_A 282 EIGELVLTTL 291 (436)
T ss_dssp CCEEEEEEES
T ss_pred CceEEEEecc
Confidence 8899999974
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.48 E-value=5.4e-14 Score=99.52 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=65.3
Q ss_pred CceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC----CcccCceecCcCCcEEEEECCC-----
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPD----- 70 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~g~p~~~~~~~v~d~~----- 70 (83)
++||.+++||+++++++.++| + +..++|.||+||++..++..... .....++|+|+++++++|+|++
T Consensus 720 ~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p 799 (1304)
T 2vsq_A 720 KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP 799 (1304)
T ss_dssp HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCC
T ss_pred CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCC
Confidence 578999999999999999888 3 46899999999998765543221 1345679999999999999976
Q ss_pred CCCcceEEEecCC
Q psy2847 71 EEGNGEICLKDLI 83 (83)
Q Consensus 71 ~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|+.
T Consensus 800 ~G~~GEl~i~G~~ 812 (1304)
T 2vsq_A 800 FGAVGELCISGMG 812 (1304)
T ss_dssp TTCCEEEEEEETT
T ss_pred CCCceEEEEeccc
Confidence 4789999999973
No 32
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.48 E-value=5.7e-14 Score=88.21 Aligned_cols=74 Identities=12% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh----c-CCeEecccCccccccceeecCCCCcccCceecC------cCCcEEEEECC-C
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF----L-DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT------IPGTQTKIVDP-D 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~----~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p------~~~~~~~v~d~-~ 70 (83)
++++|.+++||+++++++.+++ + +..+++.||+||+++++..++. .++|+| +++++++|+|+ +
T Consensus 230 ~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~~~ 304 (369)
T 3hgu_A 230 KQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDSIT 304 (369)
T ss_dssp HHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECTTT
T ss_pred cCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECCCC
Confidence 3579999999999999999887 4 8999999999999866543321 147888 99999999998 3
Q ss_pred -----CCCcceEEEec
Q psy2847 71 -----EEGNGEICLKD 81 (83)
Q Consensus 71 -----~g~~Gei~~~~ 81 (83)
.|+.|||++++
T Consensus 305 g~~vp~G~~GEl~vt~ 320 (369)
T 3hgu_A 305 AQTVEYGERGNVIVTH 320 (369)
T ss_dssp CSBCCTTCEEEEEEEE
T ss_pred CcCCCCCCceEEEEEE
Confidence 47899999986
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.46 E-value=7.7e-14 Score=87.79 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=65.5
Q ss_pred CCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCCCCcceEEEe
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 80 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~g~~Gei~~~ 80 (83)
+++||.+++||+++++++.+++ ++.++++.||+||++..++....+....+.++.+.|++++.+.+ .|||+++
T Consensus 147 l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~-----~Gel~~~ 221 (358)
T 4gs5_A 147 VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE-----RGCLHIS 221 (358)
T ss_dssp GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT-----TSEEEEE
T ss_pred CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccceeeccCCCeEEEecC-----cCceEEe
Confidence 5789999999999999999999 78999999999999887777666556678899999999998866 6999998
Q ss_pred cC
Q psy2847 81 DL 82 (83)
Q Consensus 81 ~~ 82 (83)
++
T Consensus 222 g~ 223 (358)
T 4gs5_A 222 GA 223 (358)
T ss_dssp SG
T ss_pred cc
Confidence 75
No 34
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.41 E-value=2.7e-13 Score=88.12 Aligned_cols=77 Identities=23% Similarity=0.274 Sum_probs=61.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.++.+|++ ++.+++ + +..+++.||+||++.+++..... .....+|+|+++++++++|++ .|+
T Consensus 271 l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~~~~~~~g~ 346 (509)
T 3ivr_A 271 LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTVAVVDAEDRPLPPGE 346 (509)
T ss_dssp GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEEEEECTTSCBCCTTC
T ss_pred hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEEEEECCCCCCCCCCC
Confidence 5789999999987 666666 4 88999999999998766554332 233459999999999999986 478
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++||+
T Consensus 347 ~GEl~v~g~~ 356 (509)
T 3ivr_A 347 VGEIVLRGPT 356 (509)
T ss_dssp CEEEEEESTT
T ss_pred ceEEEEecCC
Confidence 8999999974
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.40 E-value=1.2e-12 Score=83.72 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=60.2
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccc-eeecCCCCcccCceecCcCCcEEEEECCC------CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGA-HTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~-~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g 72 (83)
++++|.+++||+++++++.+++ ++..+++.||+||+++. ++..... .....+.|.+++.++++|++ .|
T Consensus 209 ~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~--~~~g~~~~~~~~~~~i~d~~~g~~~~~g 286 (437)
T 2y27_A 209 QSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVE--TKDGPTIWEDHFYPEIIDPETGEVLPDG 286 (437)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTT--TCSSCEECTTTEEEEEECTTTCCBCCTT
T ss_pred cCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCC--CCCceeEccCceEEEEEcCCCCCCCCCC
Confidence 3689999999999999999988 69999999999998432 3333221 11136677789999999964 47
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||++++.
T Consensus 287 ~~Gel~v~~~ 296 (437)
T 2y27_A 287 ELGELVFTSL 296 (437)
T ss_dssp CCEEEEEEES
T ss_pred CccEEEEecC
Confidence 7899999874
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.40 E-value=9.9e-13 Score=84.23 Aligned_cols=78 Identities=21% Similarity=0.349 Sum_probs=60.0
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccc-eeecCCCCcccCceecCcCCcEEEEECCC------CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGA-HTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~-~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g 72 (83)
++++|.+++||+++++++.+++ ++..+++.||+||+++. ++..... .....+.|.+++.++++|++ .|
T Consensus 211 ~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~--~~~g~~~~~~~~~~~i~d~~~g~~~~~G 288 (443)
T 2y4o_A 211 ESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVE--TKDGPVIWEDHFYPEIIDPVTGEVLPDG 288 (443)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTT--TCCSEEECTTTEEEEEECTTTCCBCCTT
T ss_pred cCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCC--CCCceEEccCCeEEEEEcCCCCCCCCCC
Confidence 3689999999999999999988 69999999999997432 3332221 11126667789999999964 47
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||++++.
T Consensus 289 ~~Gel~v~~~ 298 (443)
T 2y4o_A 289 SQGELVFTSL 298 (443)
T ss_dssp CCEEEEEEES
T ss_pred CceEEEEeCC
Confidence 8899999874
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=76.82 E-value=8.8 Score=26.08 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=23.3
Q ss_pred eEEEEEecCCCCHHHHHHh-cCCeEe-cccCccccc
Q psy2847 6 CRVSLSGAAAISTELKRYF-LDIAIC-EVFGMSECA 39 (83)
Q Consensus 6 lr~~~~gg~~~~~~~~~~~-~~~~~~-~~yG~tE~~ 39 (83)
+.++++||...-...++.+ .+.+++ ..|++||+.
T Consensus 302 l~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~ 337 (581)
T 4eql_A 302 IETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETT 337 (581)
T ss_dssp EEEECSGGGGGGHHHHHHHHTTCCEECCEEECSSCE
T ss_pred EEEEcCCChHHHHHHHHHHcCCCccccCccccccce
Confidence 6677777754444455555 567766 999999963
No 38
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=67.06 E-value=21 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHh-cCCeEe-cccCccccc
Q psy2847 7 RVSLSGAAAISTELKRYF-LDIAIC-EVFGMSECA 39 (83)
Q Consensus 7 r~~~~gg~~~~~~~~~~~-~~~~~~-~~yG~tE~~ 39 (83)
.++++|+...-...++.+ .+.+++ ..|++||+.
T Consensus 308 ~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~ 342 (581)
T 4epl_A 308 YGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGW 342 (581)
T ss_dssp EEECSGGGGGGHHHHHHHHTTSCEEECCEEETTEE
T ss_pred EEEeCCChHHHHHHHHHHcCCCccccCceecccee
Confidence 455556543333444555 467766 999999974
No 39
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=44.70 E-value=18 Score=22.64 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCHHHHHHh--cCCeEecccCcccc
Q psy2847 6 CRVSLSGAAAISTELKRYF--LDIAICEVFGMSEC 38 (83)
Q Consensus 6 lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~ 38 (83)
+..++.||+.+|+++++.+ ++-.+-+.||.++-
T Consensus 203 vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e 237 (305)
T 1rvg_A 203 APLVLHGASAVPPELVERFRASGGEIGEAAGIHPE 237 (305)
T ss_dssp SCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHH
T ss_pred CCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHH
Confidence 4568899998999988888 77778888887754
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=41.85 E-value=83 Score=21.64 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCHHHHHHh-cCCeEe-cccCccccc
Q psy2847 6 CRVSLSGAAAISTELKRYF-LDIAIC-EVFGMSECA 39 (83)
Q Consensus 6 lr~~~~gg~~~~~~~~~~~-~~~~~~-~~yG~tE~~ 39 (83)
+.++++||...-...++.+ .+.+++ ..|++||+.
T Consensus 307 l~~~~tG~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~ 342 (609)
T 4b2g_A 307 LDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECY 342 (609)
T ss_dssp EEEECSGGGGGGHHHHHHHHTSCCEECCEEECSSCE
T ss_pred EEEEccCChHHHHHHHHHHcCCCccccCccccccee
Confidence 5566677754443445555 467766 999999974
No 41
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=36.67 E-value=23 Score=22.13 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=24.6
Q ss_pred EEEEEecCCCCHHHHHHh--cCCeEecccCcccc
Q psy2847 7 RVSLSGAAAISTELKRYF--LDIAICEVFGMSEC 38 (83)
Q Consensus 7 r~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~ 38 (83)
-.++.||+.+|++.++.+ ++-.+-+.||.++-
T Consensus 206 PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e 239 (307)
T 3n9r_A 206 PLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFE 239 (307)
T ss_dssp CEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHH
T ss_pred CeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHH
Confidence 467889998888888887 67777777777654
No 42
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=35.00 E-value=27 Score=21.98 Aligned_cols=33 Identities=9% Similarity=0.239 Sum_probs=24.9
Q ss_pred eEEEEEecCCCCHHHHHHh--cCCeEecccCcccc
Q psy2847 6 CRVSLSGAAAISTELKRYF--LDIAICEVFGMSEC 38 (83)
Q Consensus 6 lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~ 38 (83)
+-.++.||+.+|++.++.+ .+-.+-+.||.++-
T Consensus 205 vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e 239 (323)
T 2isw_A 205 IPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIE 239 (323)
T ss_dssp SCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccccccCCCCCHH
Confidence 3467889998888888887 67777777776654
No 43
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=28.44 E-value=26 Score=20.72 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=15.2
Q ss_pred cCCeEecccCcccccccee
Q psy2847 25 LDIAICEVFGMSECAGAHT 43 (83)
Q Consensus 25 ~~~~~~~~yG~tE~~~~~~ 43 (83)
....++..||++|..+...
T Consensus 132 i~~~ii~l~GsvE~aP~~G 150 (214)
T 2vd2_A 132 EQVEIIKLNGSIELAPLIG 150 (214)
T ss_dssp CCCEEEECCSCTTHHHHTT
T ss_pred CcEEEEECCCceeeccCCC
Confidence 4678999999999986543
No 44
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=25.94 E-value=50 Score=20.48 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=15.5
Q ss_pred cCCeEecccCccccccceee
Q psy2847 25 LDIAICEVFGMSECAGAHTV 44 (83)
Q Consensus 25 ~~~~~~~~yG~tE~~~~~~~ 44 (83)
.+..++..||++|..+...+
T Consensus 135 i~~~ii~l~GsvE~ap~~Gl 154 (289)
T 2vd3_A 135 IDAEVVELTGSTEIAPFIGV 154 (289)
T ss_dssp CCCEEEECSSCGGGTTTTTS
T ss_pred CcEEEEECCCceeeccCCCc
Confidence 45779999999999875433
No 45
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=25.57 E-value=29 Score=20.38 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHHHHHh-----cCCeEecccCccccccceee
Q psy2847 18 TELKRYF-----LDIAICEVFGMSECAGAHTV 44 (83)
Q Consensus 18 ~~~~~~~-----~~~~~~~~yG~tE~~~~~~~ 44 (83)
+.+.+++ ....++..||++|..+...+
T Consensus 116 p~l~~~yf~~~gi~~~ii~l~GsvE~ap~~Gl 147 (206)
T 1ve4_A 116 PNFTARLLKERGWAADVVELSGNIELAAVTGL 147 (206)
T ss_dssp HHHHHHHHHHTTCCCEEEECSSCTHHHHHTTS
T ss_pred hHHHHHHHHHCCCcEEEEECCCceeeccCCCC
Confidence 3455554 46779999999999865433
No 46
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=25.27 E-value=26 Score=20.58 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHh-----cCCeEecccCccccccceee
Q psy2847 19 ELKRYF-----LDIAICEVFGMSECAGAHTV 44 (83)
Q Consensus 19 ~~~~~~-----~~~~~~~~yG~tE~~~~~~~ 44 (83)
.+.+++ ....++..||++|..+...+
T Consensus 119 ~l~~~yf~~~gi~~~ii~l~GsvE~ap~~Gl 149 (208)
T 1z7m_E 119 RVTKKYFAQKQEDIEIIKLEGSVELGPVVGL 149 (208)
T ss_dssp HHHHHHHHHTTCCEEEEECSSCTTHHHHTTS
T ss_pred HHHHHHHHHcCCceEEEECCCceeeccCCCc
Confidence 455554 45679999999999865433
No 47
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=22.55 E-value=30 Score=20.54 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=18.8
Q ss_pred HHHHHHh-----cCCeEecccCccccccceee
Q psy2847 18 TELKRYF-----LDIAICEVFGMSECAGAHTV 44 (83)
Q Consensus 18 ~~~~~~~-----~~~~~~~~yG~tE~~~~~~~ 44 (83)
+.+.+++ ....++..||++|..+...+
T Consensus 111 p~l~r~yf~~~Gi~~~Ii~l~GsvE~aP~~Gl 142 (219)
T 1o63_A 111 PNVTQRYCESKGWHCRIIPLKGSVELAPIAGL 142 (219)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCTTHHHHHTS
T ss_pred HHHHHHHHHHCCCceEEEECCCceeeccCCCC
Confidence 3455555 45679999999999865433
No 48
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=21.25 E-value=76 Score=15.49 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=4.5
Q ss_pred CcceEEEec
Q psy2847 73 GNGEICLKD 81 (83)
Q Consensus 73 ~~Gei~~~~ 81 (83)
+-|.+|+++
T Consensus 36 ~~G~vyl~g 44 (89)
T 2xet_A 36 DNSGVYLTG 44 (89)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEC
Confidence 345555543
Done!