RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2847
(83 letters)
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 106 bits (267), Expect = 8e-29
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Query: 1 MGLDRCRVSLSGAAAISTELKRYFL--DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
+GLDRC+ +GAA IS E +FL +I I E++GMSE +G HTVS P +++L G+
Sbjct: 315 LGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCGKA 374
Query: 59 IPGTQTKIVDPDEEGNGEICL 79
+PG +TKI +PD +G GEIC+
Sbjct: 375 LPGCETKIHNPDADGIGEICI 395
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 86.4 bits (215), Expect = 1e-21
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 1 MGLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
+G R R ++SG A + E+ +F L I I E +G++E +G TV+ P D ++ VG+
Sbjct: 212 LGGGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIRIGTVGKP 271
Query: 59 IPGTQTKIVDPDEEGNGEICLK 80
+PG + +I + +GEI ++
Sbjct: 272 LPGVEVRIAE-----DGEILVR 288
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 78.5 bits (194), Expect = 9e-19
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 1 MGLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
+GLD+ R++ SGAA + L ++ L + ICE +GM+E T++ P D ++ VG+
Sbjct: 272 LGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTLNYPGDRRIGTVGKP 331
Query: 59 IPGTQTKIVDPDEEGNGEICLK 80
IPG + KI E+ GEI ++
Sbjct: 332 IPGVELKI---SED--GEILIR 348
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 70.0 bits (172), Expect = 8e-16
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 4 DRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPG 61
R R +LSG A +S EL +F L I I E +G++E + +V+ PD F L VG+ +PG
Sbjct: 353 GRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPG 412
Query: 62 TQTKIVDPDEEGNGEICLK 80
+ KI D +GEI ++
Sbjct: 413 IEVKIAD-----DGEILVR 426
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 59.8 bits (145), Expect = 3e-12
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 7 RVSLSGAAAISTELKRYFLD----IAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIP 60
R+ LSG A + EL F + IAI E +G++E + T++ PDD K VGR +P
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353
Query: 61 GTQTKIVDPDEEGN-----GEICLK 80
G + +IVDPD GEI ++
Sbjct: 354 GVEVRIVDPDGGEVLPGEVGEIWVR 378
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 59.0 bits (144), Expect = 4e-12
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPG 61
R+ + GAA + ELKR ++ + +GM+E T+ +P+D+ KL VGR +PG
Sbjct: 118 RLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPG 177
Query: 62 TQTKIVDPDEEGN-------GEICLK 80
+ +IVD D G GEI ++
Sbjct: 178 VEVRIVDED--GRELPPGEVGEIVVR 201
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 58.8 bits (143), Expect = 7e-12
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 7 RVSLSGAAAISTEL----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 62
RV SGAA +S EL ++ F + I + +GM+E A T++ P D K VGR +P
Sbjct: 266 RVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNV 325
Query: 63 QTKIVDPDEEGN------GEICLK 80
+ KIVD D + GE+C+K
Sbjct: 326 EAKIVDEDGGKSLGPNERGELCVK 349
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 58.3 bits (142), Expect = 8e-12
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIAICEV---FGMSECAGAHTVSAPDDFKLDGVGRTIPG 61
R R+ LSG A +S + + + C V +G++E T+S P D VG +P
Sbjct: 270 RVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPLPC 329
Query: 62 TQTKIVD-P-------DEEGNGEICLK 80
+ K+VD P D+ GEIC++
Sbjct: 330 CEIKLVDVPEMGYFAKDDPPRGEICIR 356
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 56.4 bits (137), Expect = 4e-11
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 7 RVSLSGAAAISTELKRYFLDIAICEV---FGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R+ +SG A + E+ F + + +G++E + TV+ D + G +G +PGT
Sbjct: 245 RLCISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGT 304
Query: 63 QTKIVDPDEEGN-------GEICLK 80
+ KIVD EGN GE+ ++
Sbjct: 305 EVKIVDD--EGNELPPGEVGELVVR 327
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 54.1 bits (131), Expect = 3e-10
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 16/92 (17%)
Query: 3 LDRCRVSLSGAAAISTEL-KRYFLDIAICEV---FGMSECAGAHTVSAPDDF---KLDGV 55
L R +SG A + EL +R + + E+ +GM+E +G T ++ DD + V
Sbjct: 116 LSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTV 175
Query: 56 GRTIPGTQTKIVDPDEEGN-------GEICLK 80
GR +PG + KIVDPD G GEIC++
Sbjct: 176 GRPLPGVEVKIVDPD--GGEVPPGEVGEICVR 205
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 53.8 bits (130), Expect = 4e-10
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R +L GAA + E+ R F + I E +G++E +V+ PD + G VG +P
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 63 QTKIVDPDEEGN----------GEICLK 80
+ ++V D+ G G +C+
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIA 423
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 52.0 bits (125), Expect = 2e-09
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLD----IAICEVFGMSECAGAHTVSAPDDFKLDG--VG 56
L R+ LSG + EL R + + + +G +E T + P D ++ +G
Sbjct: 246 LSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIG 305
Query: 57 RTIPGTQTKIVDPDEE-----GNGEICLK 80
R +PG + K++D + E GE+C++
Sbjct: 306 RPLPGVEVKVLDEEGEPVPPGEVGELCIR 334
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 51.1 bits (123), Expect = 3e-09
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R+ +SG +S EL F + I E +G++E + + + + K G VGR +PG
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178
Query: 63 QTKIVDPDEEGN-----GEICLK 80
+ ++VD + + GE+ ++
Sbjct: 179 EVRVVDEEGKPLPPGEVGELVVR 201
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 51.0 bits (123), Expect = 4e-09
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDG------VGR 57
R+ + G AA+ L R F + I + + +GM+E + +V P+D GR
Sbjct: 284 RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGR 343
Query: 58 TIPGTQTKIVDPDEE-----GN--GEICLK 80
+PG + +IVD D + G GEI ++
Sbjct: 344 PLPGVEARIVDDDGDELPPDGGEVGEIIVR 373
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 50.0 bits (120), Expect = 9e-09
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT 62
R +L+GAA + E+ R F + + E +GM+E G ++ + VG +P T
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYT 184
Query: 63 QTKIVDPDEEGN-GEIC 78
+ ++ D G G C
Sbjct: 185 RVRVAKLDAGGALGRDC 201
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 49.1 bits (118), Expect = 1e-08
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
R+ ++GA + + F + I I E +G +EC+ +V+ P K VGR +PG +
Sbjct: 262 RLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321
Query: 64 TKIVDPD 70
+IV P+
Sbjct: 322 VRIVSPE 328
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 48.8 bits (117), Expect = 2e-08
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 10 LSGAAAISTEL----KRYFLDIAICEVFGMSE-CAGAHTVSAP-DDFKLDGVGRTIPGTQ 63
SGAA + EL + F + + + +GM+E P D K VGR +P +
Sbjct: 281 GSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVE 340
Query: 64 TKIVDPD-----EEGN-GEICLK 80
KIVDP+ GE+ ++
Sbjct: 341 AKIVDPETGESLPPNQPGELWVR 363
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 46.8 bits (112), Expect = 1e-07
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 3 LDRCRVSLSGAAAISTEL--KRYFLDIAICEVFGMSECAGAHTVSAPDDF--KLDGVGRT 58
L R L G A I L + I + +GM+E A PDDF KL VG+
Sbjct: 188 LSSLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKP 247
Query: 59 IPGTQTKIVDPDEEGNGEICLK 80
+PG + +IV+P +GEI ++
Sbjct: 248 LPGRELRIVNP---QDGEILVR 266
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 46.4 bits (111), Expect = 1e-07
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSEC--AGAHTVSAPDDFKLDGVGRTIPG 61
RV L G A + EL R + + +GM+E T PDD + GR +PG
Sbjct: 211 RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPG 270
Query: 62 TQTKIVDPDEE-----GNGEICLK 80
+ +IVD D GE+ ++
Sbjct: 271 VEVRIVDDDGNDVPPGEEGELQVR 294
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 46.1 bits (110), Expect = 2e-07
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPD----------DFKLD 53
R+ ++GA + E+ F + I I E +G +E + +V+ PD K
Sbjct: 901 RLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEG 960
Query: 54 GVGRTIPGTQTKIVDPD 70
VG +PG +IVDP+
Sbjct: 961 SVGMPLPGVAVRIVDPE 977
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 45.3 bits (108), Expect = 4e-07
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAIC-EVFGMSECAGAHTVSAPDDFKLDG---VGRTI 59
R++++GAA++ L F L + I +G+SE +G T + DD + +G I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343
Query: 60 PGTQTKIVDPDEEGN-----GEICLK 80
G + KIV+ E GE+ ++
Sbjct: 344 AGVENKIVNELGEEVPVGEVGELLVR 369
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 44.4 bits (105), Expect = 7e-07
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
+++LSG A+ + ++ AICE +GM+E + +V+ ++ +G +P T
Sbjct: 329 KLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL 388
Query: 64 TKIVDPDEEGN-------GEICLK 80
K++D D GN GE+C+K
Sbjct: 389 CKVIDDD--GNELPLGEVGELCVK 410
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 43.8 bits (104), Expect = 1e-06
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDG------VGR 57
R+ +SG+AA+ + + + + E +GM+E A +S P LDG VG
Sbjct: 209 RLFVSGSAALPVPVLERWEERTGHTLLERYGMTETGMA--LSNP----LDGERRPGTVGL 262
Query: 58 TIPGTQTKIVDPD------EEGNGEICLK 80
+PG + +IVD D GEI ++
Sbjct: 263 PLPGVEVRIVDEDGGEPLAAGEVGEIQVR 291
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 40.1 bits (94), Expect = 3e-05
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 10 LSGAAAISTELKRYFLDIAICE------VFGMSECAGAHTVSAPDDFK-LDGVGRTIPGT 62
L G +AI L ++ A +GM+E T + P+ VGR + G
Sbjct: 225 LLGGSAIPAPL----IEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGR 280
Query: 63 QTKIVDPDEEGNGEICLK 80
+ KI ++EG+GEI +K
Sbjct: 281 EIKIKVDNKEGHGEIMVK 298
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 39.0 bits (92), Expect = 6e-05
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 26 DIAICEVFGMSECAGAHTVSAPDDFKLD----GVGRTIPGTQTKIVDPDEEGN------- 74
++ I +GM+E + T + DD L+ VGR +P + KIVDP E G
Sbjct: 343 EVTIA--YGMTETSPVSTQTRTDD-PLEKRVTTVGRALPHLEVKIVDP-ETGETVPRGEQ 398
Query: 75 GEIC 78
GE+C
Sbjct: 399 GELC 402
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 39.1 bits (91), Expect = 6e-05
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 19 ELKRYFLDIAICEVFGMSECAGAHTVSAPDD-FKLDGV--GRTIPGTQTKIVDPD 70
E L I +GM+E GA TV+ PDD + GR +PG + K++D +
Sbjct: 328 ERAWELLGALIVSAWGMTEN-GAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN 381
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 37.8 bits (88), Expect = 2e-04
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIAIC------EVFGMSE-CAGAHTVSAPDDFKLDGVGR 57
R R LSG A +S + +R+ I IC + +G++E CAGA T S DD + VG
Sbjct: 421 RIRFMLSGGAPLSGDTQRF---INICLGAPIGQGYGLTETCAGA-TFSEWDDTSVGRVGP 476
Query: 58 TIPGTQTKIVDPDEEG 73
+P K+V +E G
Sbjct: 477 PLPCCYVKLVSWEEGG 492
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 36.9 bits (85), Expect = 3e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 7 RVSLSGAAAISTELKRYFLDIAICEV---FGMSE-CAGAHTVSAPDDFKLDG-VGRTIPG 61
R+ LSGAA +++ ++ + +A C V +G++E CAG VS PD+ + G VG +P
Sbjct: 389 RIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTF-VSLPDELDMLGTVGPPVPN 447
Query: 62 TQTKIVDPDE--------EGNGEICLK 80
++ E GEIC++
Sbjct: 448 VDIRLESVPEMEYDALASTPRGEICIR 474
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 36.9 bits (86), Expect = 4e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 31 EVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD--EE----GNGEICLK 80
E +G++E + PD K +G + GT +++DP+ EE GEI ++
Sbjct: 229 EGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVR 284
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 36.1 bits (84), Expect = 7e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
RV S ++ E +F L + I +++G +E P K G +PG
Sbjct: 293 RVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRPP-VKNGSSGLPLPGYA 351
Query: 64 TKIVDPDEE----GNGEICLK 80
+ VD + G GE+ ++
Sbjct: 352 VRRVDDEGNPVPPGVGELVVR 372
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 35.9 bits (83), Expect = 8e-04
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIAIC----EVFGMSECAGAHTVSAPDDFKLDG-VGRTI 59
R R+ +SG A +STE++ FL + C + +G++E G T+ PD+ + G VG
Sbjct: 384 RLRLLISGGAPLSTEIEE-FLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG--A 440
Query: 60 PGTQTKI---------VDP-DEEGNGEICLK 80
P ++ DP E GEIC++
Sbjct: 441 PAVYNELRLEEVPEMGYDPLGEPPRGEICVR 471
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 35.8 bits (83), Expect = 8e-04
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIA----ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP 60
R R SGA+ +S ++ FL I + E +GM+E + + D VG P
Sbjct: 377 RVRFMSSGASPLSPDVME-FLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNP 435
Query: 61 GTQTKIVDPDEEG---------NGEICLK 80
+ K+VD E GEIC++
Sbjct: 436 ACEVKLVDVPEMNYTSEDQPYPRGEICVR 464
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 35.8 bits (83), Expect = 9e-04
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 5 RCRVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPG 61
R R ++GA + K+ + D + I E +G++ECA +++ P K VGR +PG
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPG 539
Query: 62 TQTKIV 67
+++
Sbjct: 540 MDARLL 545
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 35.3 bits (82), Expect = 0.001
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 36/102 (35%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLDI---------AICEVFGMSE-CAG---AHTVSAPDD 49
L R ++ A+ + R FL++ AI FGMSE C+G + D
Sbjct: 288 LSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPD 347
Query: 50 ------FKLDG-----------------VGRTIPGTQTKIVD 68
L G +GR IPG +IVD
Sbjct: 348 TGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD 389
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 35.1 bits (81), Expect = 0.002
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 10 LSGAAAISTELKRYFLDIAICEV---FGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQ 63
++GA ++R ++ + EV +GM+E + + D +++ VGRT P +
Sbjct: 324 MAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLE 383
Query: 64 TKIVDPDEE-----GNGEICLK 80
K+VDPD GE+C +
Sbjct: 384 VKVVDPDGATVPRGEIGELCTR 405
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 33.9 bits (78), Expect = 0.004
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 7 RVSLSGAAAIS---TELKRYFLDIAICEVFGMSECAGAHTVSAPDD-----FKLDGVGRT 58
R L A I E R L I +GM+E GA T++ DD DG
Sbjct: 315 RTFLCAGAPIPGALVERARAALGAKIVSAWGMTEN-GAVTLTKLDDPDERASTTDG--CP 371
Query: 59 IPGTQTKIVDPD 70
+PG + ++VD D
Sbjct: 372 LPGVEVRVVDAD 383
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 33.8 bits (78), Expect = 0.004
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 7 RVSLSGAAAISTELKRYFLD---------IAICEVFGMSE-CAGAHTVSAPDDFKLDGVG 56
R+ +GA IS +L FL+ A+ V+G++E + FK +
Sbjct: 231 RLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLD 290
Query: 57 RTIPGTQTKIVDPDEEGNGEICLKDL 82
R KI++ D + + I ++
Sbjct: 291 RNHLKVGVKIIEIDPKNSDAISFVEV 316
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 33.7 bits (78), Expect = 0.004
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD---FKLDGVG 56
L RV G A +S EL R L + +VFGM+E G + DD + G
Sbjct: 254 LSSLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--GLVNYTRLDDPPDVIMRTQG 311
Query: 57 RTI-PGTQTKIVDPD----EEGN-GEIC 78
R I P + +IVD G GE+
Sbjct: 312 RPISPADEIRIVDDQGEPVPPGEVGELL 339
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 33.4 bits (77), Expect = 0.006
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 19 ELKRYFLDIAICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGTQTKIVDPDEEGN-- 74
EL+ + +G +E A TV P++ + GR + +T++V D++GN
Sbjct: 305 ELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVV--DDDGNDV 362
Query: 75 -----GEIC 78
GEI
Sbjct: 363 APGEVGEIV 371
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 33.0 bits (76), Expect = 0.007
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 12 GAAAISTEL-KRYF-LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDP 69
G A +S L +R L + + E +G+SECA +++ P + VG+ +P Q I +
Sbjct: 245 GGARVSPSLLQRARALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSIAN- 303
Query: 70 DEEGNGEI 77
+GEI
Sbjct: 304 ----DGEI 307
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 33.1 bits (75), Expect = 0.009
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 5 RCRVSLSGA--AAISTELKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 62
RC VS A ++ L +F I I + G +E + D+++L +GR +P
Sbjct: 263 RCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPY 322
Query: 63 QTKIVDPD 70
+ ++V PD
Sbjct: 323 EIRVVAPD 330
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 32.9 bits (76), Expect = 0.009
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 23/95 (24%)
Query: 7 RVSLSGAA---AISTELKRYFLDIAICEVFGMSECAGAHTVS--------APDDFKLD-- 53
RV + G+A ++ +L+ +++ +GM+E + TVS P++ KL+
Sbjct: 283 RVVVGGSALPRSLIEKLEERGVEVI--HAWGMTETSPLGTVSRLKPHLVDLPEEEKLELR 340
Query: 54 -GVGRTIPGTQTKIVDP-------DEEGNGEICLK 80
GR +PG + +IVD D + GE+ ++
Sbjct: 341 AKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVR 375
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 32.5 bits (75), Expect = 0.011
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 31 EVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGN-------GEICLK 80
E +GM+E G ++ D GR PG + +IVD D G GE+ ++
Sbjct: 224 EGYGMTE-TGVPIIAPGDPAPPGSCGRPRPGVEVRIVDED--GREVPPGEVGELVVR 277
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 32.4 bits (74), Expect = 0.015
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 8 VSLSGAAAISTELKR---YFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTI-PGTQ 63
V L+G +S ++ L++ + +G++E G V DD + +G I P T+
Sbjct: 465 VILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTK 524
Query: 64 TKIV 67
K+
Sbjct: 525 YKVR 528
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 31.9 bits (73), Expect = 0.017
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 8 VSLSGAAAISTEL-KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDG---VGRTIPGTQ 63
+ L GA A + L + L + + +GM+E A PDDF L G G+ +P Q
Sbjct: 235 ILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDDF-LAGNNSSGQVLPHAQ 293
Query: 64 TKIVDPDEEGNGEI 77
I G I
Sbjct: 294 ITIPANQ---TGNI 304
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 31.9 bits (73), Expect = 0.017
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 23/92 (25%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIAICEVFGM---------SECAGAHTVSAPDDFKLDGV 55
R R LSG +S + F+++ VFGM + C G + D + + V
Sbjct: 429 RVRAMLSGGGPLSAATQE-FVNV----VFGMVIQGWGLTETVCCGG--IQRTGDLEPNAV 481
Query: 56 GRTIPGTQTKIVDPDE-------EGNGEICLK 80
G+ + G + K++D +E E GEI L+
Sbjct: 482 GQLLKGVEMKLLDTEEYKHTDTPEPRGEILLR 513
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 31.7 bits (72), Expect = 0.022
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 7 RVSLSGAAAISTELKR----YFLDIAICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIP 60
RV GAA S L R F + I FG +E + + +D KL VG+ IP
Sbjct: 293 RVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIP 352
Query: 61 GTQTKIVDPD 70
++VD +
Sbjct: 353 TVAARVVDEN 362
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 31.9 bits (73), Expect = 0.023
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 3 LDRCRVSLSGAAAISTELKRYFL----DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
L R S A S E+K+ L ++A+ + G SE G S G+
Sbjct: 134 LSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASE-TGGGGSSVSRAGGASATGKF 192
Query: 59 IPGTQTKIVDPD 70
G T ++D D
Sbjct: 193 ELGPDTVVLDED 204
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 30.8 bits (70), Expect = 0.044
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 33 FGMSECAGAHTVSA---PDDFKLDG----VGRTIPGTQTKIVDPDEE------GNGEICL 79
+GM+E T +A DDF L VG +PGT+ KI D + GEI +
Sbjct: 360 WGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVV 419
Query: 80 K 80
+
Sbjct: 420 R 420
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 30.7 bits (70), Expect = 0.046
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 19 ELKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGTQTKIVDPDEEGN 74
E K F I E +G +E ++ + G VGR P +V D E
Sbjct: 213 EFKERFGVPRIVEFYGSTEGNVG-FINLFNK---PGAVGRL-PPAAIAVVKYDVETE 264
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 31.0 bits (71), Expect = 0.046
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDG------VGR 57
R+ +SG+A + E R F + AI E +GM+E S P DG VG
Sbjct: 272 RLFISGSAPLLAETHREFQERTGHAILERYGMTE--TNMNTSNP----YDGERRAGTVGF 325
Query: 58 TIPGTQTKIVDPD---EEGNGEI 77
+PG ++ DP+ E GEI
Sbjct: 326 PLPGVSLRVTDPETGAELPPGEI 348
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 30.2 bits (69), Expect = 0.078
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 11 SGAAAISTELKRYFLD----IAICEVFGMSEC-AGAHTVSAPDDFKLDGVGRTIPGTQTK 65
SG A S +K L+ + + + G SE G A G R G +T
Sbjct: 303 SGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGAVH-TGGPRFTIGPRTV 361
Query: 66 IVDPD----EEGNGEI 77
++D D E G+GEI
Sbjct: 362 VLDEDGNPVEPGSGEI 377
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 30.1 bits (68), Expect = 0.083
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 12 GAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGTQTKI 66
AA ++KR ++ I E +G +E +GA T + +D VG+ PG + +
Sbjct: 279 AAAPCPADVKRAMIEWWGPVIYEYYGSTE-SGAVTFATSEDALSHPGTVGKAAPGAELRF 337
Query: 67 VDPD--EEGNGEI 77
VD D GEI
Sbjct: 338 VDEDGRPLPQGEI 350
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 30.2 bits (69), Expect = 0.086
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 10 LSGAAAISTELKRYFLDIAI---CEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKI 66
L G AAI EL I C +G++E A TV A L GVG +PG + K+
Sbjct: 246 LLGGAAIPVELTEQAEQQGIRCWCG-YGLTEMAS--TVCAKRADGLAGVGSPLPGREVKL 302
Query: 67 VDPDEEGNGEICLK 80
VD GEI L+
Sbjct: 303 VD------GEIWLR 310
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 29.9 bits (68), Expect = 0.092
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 19 ELKRYFLDIAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD 70
+L+R F D + ++G++E T P+ D + D +G+ IP + +VD D
Sbjct: 136 QLRRAFPDAKLFSMYGLTEAF-RSTYLPPEELDRRPDSIGKAIPNVELWVVDED 188
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 29.2 bits (66), Expect = 0.17
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 31 EVFGMSECAGAHTVSAPDDFKLDGV------GRTIPGTQTKIVDPD----EEGN-GEIC 78
+ +G +E T D D GR PG + ++D D +G GEIC
Sbjct: 311 QYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEIC 369
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 29.2 bits (66), Expect = 0.18
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
R +GA + E ++ +++ I I E +G++E A ++ P K VGR +PG +
Sbjct: 910 RYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIE 969
Query: 64 TKI 66
++
Sbjct: 970 YRL 972
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 29.1 bits (66), Expect = 0.20
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDG--VGRTIPG 61
++ +A+S EL L+ + ++G +E A A T++ P+D VGR G
Sbjct: 326 KIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFA-TIATPEDLAEAPGTVGRPPKG 384
Query: 62 TQTKIVDPD 70
KI+D +
Sbjct: 385 VTVKILDEN 393
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 29.0 bits (65), Expect = 0.20
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 28 AICEVFGMSECAG-AHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGN-------GEICL 79
I E +G++E + A T + +L VG +PGT K++ D++GN GE+C+
Sbjct: 360 TIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVI--DDDGNELPLGERGELCI 417
Query: 80 K 80
K
Sbjct: 418 K 418
>gnl|CDD|193565 cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoacylase 1 amhX_like
subfamily. Peptidase M20 family, Uncharacterized
subfamily of uncharacterized proteins predicted as
putative amidohydrolases, including the amhX gene
product from Bacillus subtilis. These are a class of
zinc binding homodimeric enzymes involved in hydrolysis
of N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic
N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 365
Score = 28.8 bits (65), Expect = 0.23
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 13 AAAISTELKRYFLDIAICEVFGMSECAGAHTVSAPDDF 50
AA + E + AI EV G + AG +DF
Sbjct: 279 AAEVDEEAVELMKE-AITEVLGEEKLAGPCVTPGGEDF 315
>gnl|CDD|178518 PLN02930, PLN02930, CDP-diacylglycerol-serine
O-phosphatidyltransferase.
Length = 353
Score = 28.9 bits (65), Expect = 0.25
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 25 LDIAICEVFGMSECAGAHTV 44
LD+ IC FG+ AG HTV
Sbjct: 194 LDVLICNWFGI--WAGMHTV 211
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 28.3 bits (64), Expect = 0.32
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 54 GVGRTIPGTQTKIVDPD-----EEGN-GEICLK 80
GR +PG + +IVDP+ +G GEI ++
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVR 388
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 28.0 bits (63), Expect = 0.43
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 1 MGLDRCRVSLSGAAAISTELKRYFLDIA---ICEVFGMSECAGAHTVSAP--DDFKLDGV 55
+ L R + SGA A+ + + + E +G++E + V P DD + V
Sbjct: 333 VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPI-IVGNPMSDDRRPGYV 391
Query: 56 GRTIPGTQTKIVDPD 70
G P T+ +IVDP+
Sbjct: 392 GVPFPDTEVRIVDPE 406
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 28.1 bits (63), Expect = 0.45
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 5 RCRVSLSGA--AAISTELKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 62
R VS A A ++ I I + G +E + P + GR +PG
Sbjct: 211 RLCVSAGEALPAGLAERWAEATG-IEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGY 269
Query: 63 QTKIVDPD 70
+ ++VD
Sbjct: 270 EARLVDES 277
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 28.0 bits (62), Expect = 0.54
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 5 RCRVSLSGAAAISTEL----KRYFLDIAICEVFGMSE--CAGAHTVSAPDD----FKLDG 54
+ + ++ AA ++ EL + F + + E +G++E C T P+ K +
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCI-TLTHGDPEKGHGIAKKNS 362
Query: 55 VGRTIPGTQTKIVDPD------EEGNGEICLK 80
VG +P + K +DPD + GE+C++
Sbjct: 363 VGFILPNLEVKFIDPDTGRSLPKNTPGELCVR 394
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 27.6 bits (62), Expect = 0.73
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 7 RVSLSGAAAISTEL-KRY---FLDIAICEVFGMSEC---AGAHTVSAPDD--FKLDGVGR 57
R+ + G A++ L R+ + ++G +E + A V D +GR
Sbjct: 238 RLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGR 297
Query: 58 TIPGTQTKIVDPDEE-----GNGEICL 79
+ T+ ++D D GE+ +
Sbjct: 298 PLANTRLYVLDDDLRPVPVGVVGELYI 324
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 27.6 bits (62), Expect = 0.74
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 12 GAA---AISTELKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP--GTQTKI 66
GAA A++ LK + E +G++E + PD KL +G IP G ++
Sbjct: 314 GAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPDRPKLQCLG--IPTFGVDARV 370
Query: 67 VDPD---EEGNGEI 77
+DP+ E GE+
Sbjct: 371 IDPETLEELPPGEV 384
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 26.9 bits (60), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 47 PDDFKLDGVGRTIPGTQTKIVDPD--EEGNGEI 77
P K G+ +PG + K+VD D E +GEI
Sbjct: 324 PGAVKYGTSGKPVPGYEVKLVDEDGEEVADGEI 356
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 26.8 bits (60), Expect = 1.3
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 32 VFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE------GNGEICL 79
+G +E T S K +GR +P ++DPD E GE+C+
Sbjct: 237 TYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCI 290
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 26.5 bits (59), Expect = 1.4
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 21/92 (22%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAIC-EVFGMSECAGAHTVSA--------PDDFKLDG 54
R+ LSGAA + EL+ F L A+ + +GM+E A V A P K
Sbjct: 301 RMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE---AGPVLAMCLAFAKEPFPVKSGS 357
Query: 55 VGRTIPGTQTKIVDPDEEGN------GEICLK 80
G + + KIVDP+ + GEIC++
Sbjct: 358 CGTVVRNAELKIVDPETGASLPRNQPGEICIR 389
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 26.5 bits (59), Expect = 1.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 25 LDIAICEVFGMSECAGAHTVSAPDD 49
L + V+G++E G TV
Sbjct: 304 LGFEVTHVYGLTETYGPITVCEWKP 328
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 26.0 bits (58), Expect = 2.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 55 VGRTIPGTQTKIVD----PDEEGN-GEICL 79
+G PG + I+D P G GE+ +
Sbjct: 274 IGYPKPGLRALILDEDGRPVPPGEEGELVI 303
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 25.9 bits (57), Expect = 3.0
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 11 SGAAAISTELKRYFLDIAICEV--FGMSECAGAHTVSAPDDF---KLDGVGRTIPGTQTK 65
+G A + E +LD I V FGMSE +S D K G P QT+
Sbjct: 259 TGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTR 318
Query: 66 IVDPDEEGN-------GEICLK 80
+V D++GN GE+ L+
Sbjct: 319 VV--DDQGNDCPAGVPGELLLR 338
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 25.6 bits (57), Expect = 3.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 49 DFKLDGVGRTIPGTQTKIVD-------PDEEGN 74
D K +G+ +PG + IVD P+ GN
Sbjct: 372 DIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGN 404
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 25.5 bits (56), Expect = 3.7
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 30/105 (28%)
Query: 3 LDRCRVSLSGAAAI--------STELKRYFLDI-AICEVFGMSECAGAHTVSAP------ 47
L RV+L+G + +T + + D A +G++E A TV P
Sbjct: 271 LGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRV 330
Query: 48 DDFKLDG---------VGRTIPGTQTKIVDPDE------EGNGEI 77
D+ D +G IPG + +I D GEI
Sbjct: 331 DEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEI 375
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 25.3 bits (56), Expect = 3.8
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLDIA------ICEVFGMSECAGAHTVSAPDDFKLDGVG 56
L R+ +SG+AA+ + F +A E +GM+E + A + + VG
Sbjct: 240 LRGARLLVSGSAALPVPV---FDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVG 296
Query: 57 RTIPGTQTKIVDPD 70
+ G +T++VD D
Sbjct: 297 LPLAGVETRLVDED 310
>gnl|CDD|131387 TIGR02334, prpF, probable AcnD-accessory protein PrpF. The
2-methylcitrate cycle is one of at least five
degradation pathways for propionate via propionyl-CoA.
Degradation of propionate toward pyruvate consumes
oxaloacetate and releases succinate. Oxidation of
succinate back into oxaloacetate by the TCA cycle makes
the 2-methylcitrate pathway a cycle. This family
consists of PrpF, an incompletely characterized protein
that appears to be an essential accessory protein for
the Fe/S-dependent 2-methylisocitrate dehydratase AcnD
(TIGR02333). This protein is related to but distinct
from FldA (part of Pfam family pfam04303), a putative
fluorene degradation protein of Sphingomonas sp. LB126
[Energy metabolism, Fermentation].
Length = 390
Score = 25.2 bits (55), Expect = 4.1
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 49 DFKLDGVGRTIPGTQTKI--VDPDEEGNGEI 77
DF+LDGV T P + ++ +DP ++G G +
Sbjct: 158 DFELDGV--TFPAAEVQLEFLDPADDGEGAM 186
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 25.2 bits (55), Expect = 5.3
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 46 APDDFKLDGVGRTIPGTQTKIVDPDEEG------NGEICL 79
P L G +PG Q IV+PD GEI +
Sbjct: 346 KPSSLPLQDSGMVMPGAQMCIVNPDTPPLCRTDEIGEIWV 385
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 25.1 bits (55), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 39 AGAHTVSAPDDFK--LDGVGRTIPGTQTKIVDPD--EEGNGEI 77
AG + P D + D GR GT+ +I+D D E GE+
Sbjct: 349 AGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEV 391
>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1
and RasA4. Rasal1 and RasA4 are both members of GAP1
(GTPase activating protein 1). Rasal1 responds to
repetitive Ca2+ signals by associating with the plasma
membrane and deactivating Ras. RasA4 suppresses Ras
function by enhancing the GTPase activity of Ras
proteins resulting in the inactive GDP-bound form of
Ras. In this way it can control cellular proliferation
and differentiation. Both of these proteins contains
two C2 domains, a Ras-GAP domain, a plextrin homology
(PH)-like domain, and a Bruton's Tyrosine Kinase (BTK)
zinc binding domain. C2 domains fold into an 8-standed
beta-sandwich that can adopt 2 structural arrangements:
Type I and Type II, distinguished by a circular
permutation involving their N- and C-terminal beta
strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the first C2
repeat, C2A, and has a type-I topology.
Length = 121
Score = 24.4 bits (53), Expect = 7.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 67 VDPDEEGNGEICLK 80
VDPDEE GEI L+
Sbjct: 105 VDPDEEVQGEIHLE 118
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.417
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,270,802
Number of extensions: 334047
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 84
Length of query: 83
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 31
Effective length of database: 8,631,194
Effective search space: 267567014
Effective search space used: 267567014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)