RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2847
(83 letters)
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 73.8 bits (182), Expect = 2e-17
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 7 RVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGT 62
+ L G A +S + ++ I FGM+E + P+ + D VG
Sbjct: 277 QKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANV 336
Query: 63 QTKIVDPDEEGNGEICLK 80
KI +P++EG+GE+ +K
Sbjct: 337 DVKIKNPNKEGHGELMIK 354
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 68.0 bits (167), Expect = 2e-15
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 7 RVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGT 62
R ++G A + L + + +I + + + ++E G T+ +D K GR T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346
Query: 63 QTKIVDPDEE----GNGEICLK 80
+ D G GE+ +K
Sbjct: 347 DVAVRGDDGVIREHGEGEVVIK 368
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 64.5 bits (158), Expect = 4e-14
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 7 RVSLSGAAAISTE-LKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK 65
R + E + + FG SE +G T + D + GR +
Sbjct: 275 RAVTGLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVA 333
Query: 66 IVDPDEEGN-------GEICLK 80
+VD + GEI L+
Sbjct: 334 VVDAE--DRPLPPGEVGEIVLR 353
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 63.4 bits (155), Expect = 9e-14
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
R+ +SG+AA+ + E +GM+E +V A + + VG +PG +
Sbjct: 275 RLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334
Query: 64 TKIVDPD--------EEGNGEICLK 80
++V+ D E GEI ++
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVR 359
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 62.2 bits (152), Expect = 2e-13
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
R+ +SG+A + + R + A+ E +GM+E + D VG +PG
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330
Query: 64 TKIVDPDEEGN-------GEICLK 80
++ DP E G G I +K
Sbjct: 331 ARVTDP-ETGKELPRGDIGMIEVK 353
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 61.9 bits (151), Expect = 3e-13
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 7 RVSLSGAAAISTELKRYFLDI----AICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 62
SG A +S E+ I + +G++E A ++ D K VG+ +P
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369
Query: 63 QTKIVDPDEEGN-------GEICLK 80
+ K+VD + G GE+C++
Sbjct: 370 EAKVVDL-DTGKTLGVNQRGELCVR 393
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 60.7 bits (148), Expect = 8e-13
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 7 RVSLSGAAAISTELKRYFLDI----AICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 62
SG A +S E+ + + +G++E A ++ D K G+ +P
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371
Query: 63 QTKIVDPDEEGN-------GEICLK 80
+ K++D + GE+C+K
Sbjct: 372 KAKVIDL-DTKKSLGPNRRGEVCVK 395
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 58.8 bits (143), Expect = 4e-12
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 7 RVSLSGAAAISTELKRYF----------LDIAICEVFGMSECAGAHTVSAPDDFKLDG-V 55
+V +GA ++ L + +++GM+E T + P
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358
Query: 56 GRTIPGTQTKIVDPDEEGN-------GEICLK 80
G + + K++ E+G GEI ++
Sbjct: 359 GVPMSDIELKVISL-EDGRELGVGESGEIVIR 389
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 58.0 bits (141), Expect = 7e-12
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 14/89 (15%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTI 59
LD R A + + ++G +E + + P K
Sbjct: 271 LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQP---KTGTEMAPG 327
Query: 60 PGTQTKIVDPDEEGN--------GEICLK 80
++ +IV + GE+ +
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEGELIVA 356
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 56.0 bits (136), Expect = 3e-11
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 7 RVSLSGAAAISTELKRYFL----DIAICEVFGMSECAGAHTVS-----APDDFKLDGVGR 57
R+ SG A + EL+ + + +GM+E + P D K G
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT 359
Query: 58 TIPGTQTKIVDPDEEGN-------GEICLK 80
+ + KIVDP E G GEIC++
Sbjct: 360 VVRNAEMKIVDP-ETGASLPRNQPGEICIR 388
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 52.7 bits (127), Expect = 5e-10
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 7 RVSLSGAAAISTEL----KRYFLDIAICEVFGMSECAGAHTVS-----APDDFKLDGVGR 57
RV SGAA + EL F + + + +GM+E +S P K G
Sbjct: 347 RVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT 406
Query: 58 TIPGTQTKIVDPDEEGN-------GEICLK 80
+ + KIVDP + G+ GEIC++
Sbjct: 407 VVRNAEMKIVDP-DTGDSLSRNQPGEICIR 435
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 49.9 bits (120), Expect = 6e-09
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
R+ S A+ E+ F I + G +E + + GR +PG +
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362
Query: 64 TKIVDPDEEGN-------GEICLK 80
++ DE G+ G++ +K
Sbjct: 363 IELR--DEAGHAVPDGEVGDLYIK 384
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 49.6 bits (119), Expect = 7e-09
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHT-VSAPDDFKLDGVGRTI-PG 61
++ G A +S L + + +VFGM+E +T + + + G + P
Sbjct: 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD 364
Query: 62 TQTKIVDPDEEGN-------GEICLK 80
+ + D + GN G + +
Sbjct: 365 DEVWVADAE--GNPLPQGEVGRLMTR 388
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 49.1 bits (118), Expect = 1e-08
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHT-VSAPDDFKLDGVGRTI-PG 61
+V G A S E R + +VFGM+E +T + P++ ++ G+ + P
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360
Query: 62 TQTKIVDPDEEGN-------GEIC 78
++++ D G +
Sbjct: 361 DESRVWDDH--DRDVKPGETGHLL 382
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 48.7 bits (117), Expect = 1e-08
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHT-VSAPDDFKLDGVGRTIPG- 61
++ G A+ L R L+ + +VFGM+E +T + D+ GR I
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369
Query: 62 TQTKIVDPDEEGN-------GEICLK 80
+ KIVD G + +
Sbjct: 370 DEIKIVDEQ--YREVPEGEIGMLATR 393
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 3 LDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGV----- 55
L R + G +A L F + + + + +G++E + + L+ +
Sbjct: 292 LKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKS-HLESLSEEEK 350
Query: 56 -------GRTIPGTQTKIVDPD 70
G IP + ++ D +
Sbjct: 351 LTLKAKTGLPIPLVRLRVADEE 372
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 36.2 bits (83), Expect = 4e-04
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 7 RVSLSGAAAISTELKR-----YFLDIAICEVFGMSECAG-AHTVSAPDDFKLDGVGRTIP 60
G ++ + + D +G + G + ++ + + P
Sbjct: 234 AQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSP 293
Query: 61 GTQTKIVDPD-----EEG-NGEICL 79
+VD E G G + +
Sbjct: 294 FITYDVVDSITAQTVEYGERGNVIV 318
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 32.6 bits (75), Expect = 0.006
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 25 LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGN-------GEI 77
+ I E +G +E VS K +G +I+ D++GN G+I
Sbjct: 346 TGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQII--DDKGNVLPPGTEGDI 403
Query: 78 CLK 80
++
Sbjct: 404 GIR 406
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 32.3 bits (74), Expect = 0.008
Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 44/123 (35%)
Query: 2 GLD--RCRVSLSGAAAISTELKRYFLDI---------AICEVFGMSECAGAHTVSAPDD- 49
LD RV+ GA IS E F + +G++E A A + S
Sbjct: 295 ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASG 354
Query: 50 ---------------------------FKLDGVGRTIPGTQTKIVDPD----EEGN-GEI 77
G+ +P +I + E G I
Sbjct: 355 VVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERVVGHI 414
Query: 78 CLK 80
C+
Sbjct: 415 CIS 417
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 30.8 bits (70), Expect = 0.025
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 41/120 (34%)
Query: 2 GLD--RCRVSLSGAAAISTELKRYFLDI---------AICEVFGMSECAGAHTVSAPD-- 48
G D LSG+ + + F D I + ++E S P
Sbjct: 307 GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQP 366
Query: 49 ------DFKLDGVGRTIP----------------GTQTKIVDPD-----EEGN-GEICLK 80
D + G P +IVD D +G GEI +
Sbjct: 367 PETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVH 426
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 28.4 bits (64), Expect = 0.23
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 46/123 (37%)
Query: 2 GLD--RCRVSLSGAAAISTELKRYFLDI---------AICEVFGMSE----CAGAHTVSA 46
GLD + +GA + E +F A +G++E G S+
Sbjct: 285 GLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344
Query: 47 PDDFKLD-----------------------GVGRTIPGTQTKIVDPD-----EEGN-GEI 77
L G P + KI+DPD + GEI
Sbjct: 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN--PIQEVKIIDPDTLIPCDFDQVGEI 402
Query: 78 CLK 80
++
Sbjct: 403 WVQ 405
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.25
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 27/64 (42%)
Query: 17 STELKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQT-KIV--DPDEEG 73
E ++ F +++ F P IP T ++ D +
Sbjct: 368 PAEYRKMFDRLSV---F-------------PPSAH-------IP-TILLSLIWFDVIKSD 403
Query: 74 NGEI 77
+
Sbjct: 404 VMVV 407
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 26.9 bits (58), Expect = 0.65
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 22 RYFLDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPG 61
+ FL+ I + +E A TV++ D + L GRT+ G
Sbjct: 192 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYG 232
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B
3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B
3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 25.7 bits (56), Expect = 1.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 7 RVSLSGAAAISTELKRYFLDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPG 61
R+S LK + ++ I + +E A TV+A D + L GRT+ G
Sbjct: 46 RISGLIYEETRGVLKVFLENV-IRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG 100
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA
binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1
PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Length = 84
Score = 25.5 bits (56), Expect = 1.2
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 7 RVSLSGAAAISTELKRYFLDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPG 61
R+S LK FL+ I + +E A TV+A D + L GRT+ G
Sbjct: 27 RISGLIYEETRGVLK-VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG 81
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 26.0 bits (58), Expect = 1.4
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 25 LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEEGN-------GE 76
I + E FG +E + P + K +G+ PG + +++ D +G GE
Sbjct: 365 TGIKLMEGFGQTET-VVTIATFPWMEPKPGSIGKPTPGYKIELM--DRDGRLCEVGEEGE 421
Query: 77 ICLK 80
I +
Sbjct: 422 IVIN 425
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 25.3 bits (54), Expect = 2.5
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 42 HTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKDL 82
H +S D + G G P + E + + + +
Sbjct: 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain,
endocytosis, structural prote; 3.92A {Bos taurus}
Length = 125
Score = 24.9 bits (54), Expect = 2.8
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 8 VSLSGAAAISTELKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGV 55
S S ++ EL ++FL EC GA + D + D V
Sbjct: 42 ASESKDTELAEELLQWFLQE------EKRECFGACLFTCYDLLRPDVV 83
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 24.9 bits (55), Expect = 3.0
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 29 ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP 60
+ E + E GA + D G
Sbjct: 151 LAEQGKLMESYGATCIYMA-----DSGGAMSM 177
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 24.6 bits (53), Expect = 5.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 26 DIAICEVFGMSECAGAHTVSAPDDFKLDGV 55
IA +V C+ ++A DD DGV
Sbjct: 128 RIAAYKVCWNDGCSDTDILAAYDDAIADGV 157
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 23.8 bits (52), Expect = 7.2
Identities = 3/16 (18%), Positives = 4/16 (25%)
Query: 56 GRTIPGTQTKIVDPDE 71
R PG +
Sbjct: 357 NRLTPGAHIPVRPASA 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.417
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,378,243
Number of extensions: 70601
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 34
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)