RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2847
         (83 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 52.7 bits (126), Expect = 2e-10
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 13/91 (14%)

Query: 3   LDRCRVSLSGAAAISTELKRYFLD------IAICEVFGMSECAGAHTVSAPDDF--KLDG 54
               R+  S    I+ E   ++          + + +  +E  G      P     K   
Sbjct: 373 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGS 432

Query: 55  VGRTIPGTQTKIVDPDEE-----GNGEICLK 80
             R   G Q  +VD +         G + + 
Sbjct: 433 ATRPFFGVQPALVDNEGHPQEGATEGNLVIT 463


>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 46.4 bits (109), Expect = 3e-08
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 3   LDRCRVSLSGAAAISTELKRYFLD----IAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
           L       SG A +S E+            I + +G++E   A  ++   D K   VG+ 
Sbjct: 303 LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKV 362

Query: 59  IPGTQTKIVDPDE------EGNGEICLK 80
           +P  + K+VD D          GE+C++
Sbjct: 363 VPFFEAKVVDLDTGKTLGVNQRGELCVR 390


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 42.2 bits (98), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 16/94 (17%)

Query: 3   LDRCRVSLSGAAAISTELKRYFLD------IAICEVFGMSECAGAHTVSAPDDF---KLD 53
           L   R   S    I+ E+  ++ +      I I + +  +E                K  
Sbjct: 360 LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419

Query: 54  GVGRTIPGTQTKIVDPD-------EEGNGEICLK 80
                  G    ++DP+           G + +K
Sbjct: 420 SASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK 453


>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
           {Thermus thermophilus [TaxId: 274]}
          Length = 534

 Score = 42.2 bits (98), Expect = 1e-06
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 20/98 (20%)

Query: 3   LDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDF---------- 50
           L   R  + G +A    L   F  + + + + +G++E +     +               
Sbjct: 285 LKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 344

Query: 51  -KLDGVGRTIPGTQTKIVDPD-------EEGNGEICLK 80
                 G  IP  + ++ D +        +  GE+ LK
Sbjct: 345 TLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLK 382


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 330,942
Number of extensions: 12927
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)