Query psy2848
Match_columns 86
No_of_seqs 109 out of 437
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 18:25:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4029|consensus 99.7 6.3E-19 1.4E-23 130.0 3.8 63 6-68 106-169 (228)
2 KOG3898|consensus 99.6 5E-17 1.1E-21 123.4 2.8 56 6-61 69-124 (254)
3 KOG4395|consensus 99.4 5.1E-13 1.1E-17 103.7 4.5 52 7-58 172-223 (285)
4 KOG4447|consensus 99.3 1.3E-12 2.8E-17 95.6 4.2 55 4-59 73-127 (173)
5 PF00010 HLH: Helix-loop-helix 99.3 9.7E-12 2.1E-16 73.6 6.1 52 9-60 1-54 (55)
6 KOG3960|consensus 99.3 7.1E-12 1.5E-16 97.4 6.3 53 6-59 115-167 (284)
7 cd00083 HLH Helix-loop-helix d 99.1 2.4E-10 5.1E-15 67.4 6.8 55 8-62 3-57 (60)
8 smart00353 HLH helix loop heli 99.1 2.1E-10 4.6E-15 66.7 5.9 49 14-62 1-49 (53)
9 KOG0561|consensus 99.0 2.5E-10 5.4E-15 91.0 5.2 64 7-71 58-121 (373)
10 KOG3910|consensus 98.7 1.6E-08 3.4E-13 84.9 4.1 55 3-57 520-575 (632)
11 KOG4447|consensus 97.3 0.00011 2.3E-09 54.3 1.8 53 7-60 19-72 (173)
12 KOG1319|consensus 97.1 0.00059 1.3E-08 52.0 3.9 55 10-64 63-121 (229)
13 KOG1318|consensus 95.8 0.022 4.7E-07 47.0 5.6 57 5-61 229-286 (411)
14 KOG2483|consensus 93.9 0.15 3.2E-06 39.1 5.2 50 8-57 58-107 (232)
15 KOG3561|consensus 93.8 0.17 3.7E-06 44.8 6.0 59 5-63 16-75 (803)
16 KOG4304|consensus 92.9 0.081 1.8E-06 40.7 2.4 50 15-64 38-92 (250)
17 KOG2588|consensus 92.1 0.12 2.6E-06 46.5 2.7 58 2-61 266-326 (953)
18 KOG3558|consensus 69.7 6.2 0.00013 35.2 3.7 42 18-60 55-98 (768)
19 KOG3560|consensus 65.3 5.5 0.00012 35.0 2.5 43 14-57 31-74 (712)
20 PF15459 RRP14: 60S ribosome b 48.5 20 0.00044 22.3 2.4 18 20-37 3-20 (64)
21 PF05687 DUF822: Plant protein 46.9 34 0.00073 25.1 3.7 28 10-37 12-39 (150)
22 PF02464 CinA: Competence-dama 33.0 50 0.0011 23.2 2.8 22 14-35 133-154 (154)
23 smart00271 DnaJ DnaJ molecular 31.5 42 0.00091 18.8 1.8 16 18-33 42-57 (60)
24 cd06257 DnaJ DnaJ domain or J- 30.2 47 0.001 18.2 1.9 16 17-32 39-54 (55)
25 KOG4395|consensus 29.8 22 0.00049 28.3 0.6 42 7-59 80-127 (285)
26 COG4985 ABC-type phosphate tra 29.1 1E+02 0.0022 24.6 4.1 28 6-33 173-200 (289)
27 PF06401 Alpha-2-MRAP_C: Alpha 25.5 64 0.0014 24.7 2.4 22 18-39 82-103 (214)
28 KOG3429|consensus 25.2 48 0.001 24.8 1.6 20 16-35 104-123 (172)
29 PF11408 Helicase_Sgs1: Sgs1 R 23.8 66 0.0014 21.1 1.9 14 22-35 3-16 (80)
30 PF10392 COG5: Golgi transport 23.2 94 0.002 21.1 2.7 18 18-35 78-95 (132)
31 PRK03657 hypothetical protein; 22.8 91 0.002 22.7 2.7 23 14-36 145-167 (170)
32 PRK03661 hypothetical protein; 22.5 94 0.002 22.3 2.7 22 14-35 140-161 (164)
No 1
>KOG4029|consensus
Probab=99.75 E-value=6.3e-19 Score=130.03 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=56.5
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHhhhhhhhhhccCCCC
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRECIPNILE-TDDIISIDDFKADLSNHSSHRKNKSQYD 68 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~-~~KLSKietLrlAi~~~~~~~~~~~~~~ 68 (86)
...+|.++|+|||.||++||.||++||.+||+.|. ++|||||||||+||.||.....-.....
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 45789999999999999999999999999999999 9999999999999999977666554443
No 2
>KOG3898|consensus
Probab=99.65 E-value=5e-17 Score=123.41 Aligned_cols=56 Identities=29% Similarity=0.442 Sum_probs=51.7
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~ 61 (86)
...+|.++|+|||.|||+||+||+.||++||+++.+.|||||||||+|-.||....
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als 124 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALS 124 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhc
Confidence 46789999999999999999999999999999999999999999999988885544
No 3
>KOG4395|consensus
Probab=99.37 E-value=5.1e-13 Score=103.74 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=49.0
Q ss_pred hHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhh
Q psy2848 7 VKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHS 58 (86)
Q Consensus 7 ~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~ 58 (86)
..+|.+||+|||+||++||.|||+||..+|..-+++||||.+||..|-.||.
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~ 223 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYIL 223 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999988883
No 4
>KOG4447|consensus
Probab=99.32 E-value=1.3e-12 Score=95.64 Aligned_cols=55 Identities=35% Similarity=0.454 Sum_probs=50.3
Q ss_pred HHHhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhh
Q psy2848 4 IRVVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSS 59 (86)
Q Consensus 4 ~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~ 59 (86)
.....+|.-||-|||+|.++||.||..||+.||+.|.| |||||.||++|-.|++-
T Consensus 73 dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidf 127 (173)
T KOG4447|consen 73 DELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDF 127 (173)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCch
Confidence 34567999999999999999999999999999999986 99999999999988854
No 5
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.30 E-value=9.7e-12 Score=73.65 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=47.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHhhCCCC--CCCCCCCHHHHHHHHhhhhhhh
Q psy2848 9 RRNTANKKERRRTQSINNAFSDLRECIPNI--LETDDIISIDDFKADLSNHSSH 60 (86)
Q Consensus 9 rR~~aN~RER~R~~~lN~AF~~LR~~IP~~--p~~~KLSKietLrlAi~~~~~~ 60 (86)
+|...|.+||.|...||.+|+.|+.+||.. ....|++|+++|..||.||...
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~L 54 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQL 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999985 3678999999999999998654
No 6
>KOG3960|consensus
Probab=99.28 E-value=7.1e-12 Score=97.37 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=48.4
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhh
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSS 59 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~ 59 (86)
.+.||.+|.-|||+|.+.||+||+.|+.+--..|+ ++|.|+||||.||.||..
T Consensus 115 svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPN-QRLPKVEILRsAI~YIE~ 167 (284)
T KOG3960|consen 115 SVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPN-QRLPKVEILRSAIRYIER 167 (284)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-ccccHHHHHHHHHHHHHH
Confidence 46899999999999999999999999998877775 799999999999999944
No 7
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.14 E-value=2.4e-10 Score=67.37 Aligned_cols=55 Identities=27% Similarity=0.498 Sum_probs=50.1
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 8 KRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 8 ~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~ 62 (86)
.+|...|..||.|...+|.+|+.|+.+||..+...|++|+.+|..||.|+...+.
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~ 57 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQE 57 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999988778999999999999999977543
No 8
>smart00353 HLH helix loop helix domain.
Probab=99.12 E-value=2.1e-10 Score=66.70 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 14 NKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 14 N~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~ 62 (86)
|..||.|...+|.+|+.|+..||......+++|+.+|..||.|+....+
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~ 49 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQE 49 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987778999999999999999976544
No 9
>KOG0561|consensus
Probab=99.05 E-value=2.5e-10 Score=91.03 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=54.6
Q ss_pred hHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhhccCCCCCCc
Q psy2848 7 VKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRKNKSQYDSPS 71 (86)
Q Consensus 7 ~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~~~~~~~~~s 71 (86)
.-||.-||..||+||++||.+|..||.+||..- ..||||.++|.....||.+..+.|-....++
T Consensus 58 RmRReIANsNERRRMQSINAGFqsLr~LlPr~e-GEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn 121 (373)
T KOG0561|consen 58 RMRREIANSNERRRMQSINAGFQSLRALLPRKE-GEKLSKAAILQQTADYIHQLEGHKTELLPQN 121 (373)
T ss_pred HHHHHhhcchHHHHHHhhhHHHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHHhccccccccc
Confidence 367889999999999999999999999999875 4699999999999999988766665544433
No 10
>KOG3910|consensus
Probab=98.69 E-value=1.6e-08 Score=84.94 Aligned_cols=55 Identities=27% Similarity=0.367 Sum_probs=50.6
Q ss_pred hHHHhHHHhHHhHHHHHHHHHHHHHHHHH-HhhCCCCCCCCCCCHHHHHHHHhhhh
Q psy2848 3 IIRVVKRRNTANKKERRRTQSINNAFSDL-RECIPNILETDDIISIDDFKADLSNH 57 (86)
Q Consensus 3 ~~~~~~rR~~aN~RER~R~~~lN~AF~~L-R~~IP~~p~~~KLSKietLrlAi~~~ 57 (86)
..|..+||.+.|+|||-|+++||+||.+| |.|--+.-++|--+|+-||..|+.-|
T Consensus 520 aeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVI 575 (632)
T KOG3910|consen 520 AEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVI 575 (632)
T ss_pred hhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHH
Confidence 45789999999999999999999999999 88888877899999999999998777
No 11
>KOG4447|consensus
Probab=97.34 E-value=0.00011 Score=54.29 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred hHHHhHHhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhh
Q psy2848 7 VKRRNTANKK-ERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSH 60 (86)
Q Consensus 7 ~~rR~~aN~R-ER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~ 60 (86)
+.++..+|.| ||.|...+|.||+.|++++|..|++ +.+++.|||.+-.++.+.
T Consensus 19 ~~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 19 VSEEECDRQRKERGRKRRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred hhhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhH
Confidence 3566677777 9999999999999999999999976 778999999987776543
No 12
>KOG1319|consensus
Probab=97.12 E-value=0.00059 Score=52.04 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=44.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHhhCCCC-CCC---CCCCHHHHHHHHhhhhhhhhhcc
Q psy2848 10 RNTANKKERRRTQSINNAFSDLRECIPNI-LET---DDIISIDDFKADLSNHSSHRKNK 64 (86)
Q Consensus 10 R~~aN~RER~R~~~lN~AF~~LR~~IP~~-p~~---~KLSKietLrlAi~~~~~~~~~~ 64 (86)
|.+...=||+|-..||.+|+.|..+||.. |++ .||||..+|--+|.|+......+
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k 121 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEK 121 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445559999999999999999999963 333 69999999999999996654333
No 13
>KOG1318|consensus
Probab=95.83 E-value=0.022 Score=46.98 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=49.3
Q ss_pred HHhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 5 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNI-LETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 5 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~-p~~~KLSKietLrlAi~~~~~~~ 61 (86)
+..++|.-.|+=||+|-.+||...-+|-..||.. -.+-|+.|--+|..+..||.+.+
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lq 286 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQ 286 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHH
Confidence 4566777889999999999999999999999964 45689999999999999996653
No 14
>KOG2483|consensus
Probab=93.91 E-value=0.15 Score=39.15 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=42.1
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhh
Q psy2848 8 KRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNH 57 (86)
Q Consensus 8 ~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~ 57 (86)
..|..-|+=||+|-..|=.-|+.|+..||..+..++=.-+.+|+-|+.+|
T Consensus 58 ~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i 107 (232)
T KOG2483|consen 58 SSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHI 107 (232)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHH
Confidence 45788899999999999999999999999987665554677777777776
No 15
>KOG3561|consensus
Probab=93.81 E-value=0.17 Score=44.84 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=50.7
Q ss_pred HHhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHhhhhhhhhhc
Q psy2848 5 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNIL-ETDDIISIDDFKADLSNHSSHRKN 63 (86)
Q Consensus 5 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p-~~~KLSKietLrlAi~~~~~~~~~ 63 (86)
+....|..+|.=|++|-..+|.-.++|=..||..- -.+|+=|..+||.||..+...++-
T Consensus 16 k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 16 KDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 34456888999999999999999999999999743 469999999999999998776553
No 16
>KOG4304|consensus
Probab=92.87 E-value=0.081 Score=40.69 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCC-----CCCCCHHHHHHHHhhhhhhhhhcc
Q psy2848 15 KKERRRTQSINNAFSDLRECIPNILE-----TDDIISIDDFKADLSNHSSHRKNK 64 (86)
Q Consensus 15 ~RER~R~~~lN~AF~~LR~~IP~~p~-----~~KLSKietLrlAi~~~~~~~~~~ 64 (86)
-=||+|-.-||.-+++|+.+||..-. ..||-|.|+|-+++.++...+.-.
T Consensus 38 l~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 38 LLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 34888999999999999999996332 279999999999999987765444
No 17
>KOG2588|consensus
Probab=92.07 E-value=0.12 Score=46.51 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=48.8
Q ss_pred chHHHh---HHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 2 PIIRVV---KRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 2 ~~~~~~---~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~ 61 (86)
||.++. .+|.+.|.=|++=--+||+-..+||..||..+ -|+.|-++||-||+++...+
T Consensus 266 Pi~rl~~G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~--aKl~kSavLr~ai~~i~dl~ 326 (953)
T KOG2588|consen 266 PIKRLLPGGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTE--AKLNKSAVLRKAIDYIEDLQ 326 (953)
T ss_pred chhhcCCCCcccchhhHHHHHhhcchhHHHHHHHHhcCccH--hhhhhhhhHHHHHHHHHHhh
Confidence 454443 46999999999988899999999999999664 59999999999999995543
No 18
>KOG3558|consensus
Probab=69.65 E-value=6.2 Score=35.17 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCC--CCCCCHHHHHHHHhhhhhhh
Q psy2848 18 RRRTQSINNAFSDLRECIPNILE--TDDIISIDDFKADLSNHSSH 60 (86)
Q Consensus 18 R~R~~~lN~AF~~LR~~IP~~p~--~~KLSKietLrlAi~~~~~~ 60 (86)
|.|--.=|.-|.+|-++|| .|. .-.|-|+.++|++|.|+--+
T Consensus 55 RsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLRlr 98 (768)
T KOG3558|consen 55 RSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLRLR 98 (768)
T ss_pred hhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHHHH
Confidence 3455677999999999999 554 47899999999999998554
No 19
>KOG3560|consensus
Probab=65.34 E-value=5.5 Score=34.98 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCHHHHHHHHhhhh
Q psy2848 14 NKKERRRTQSINNAFSDLRECIPNILET-DDIISIDDFKADLSNH 57 (86)
Q Consensus 14 N~RER~R~~~lN~AF~~LR~~IP~~p~~-~KLSKietLrlAi~~~ 57 (86)
|.=.|.| .-||.-+|.|-.+||..+.. -||-|+.+||+++.|+
T Consensus 31 NPSKRHR-dRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyL 74 (712)
T KOG3560|consen 31 NPSKRHR-DRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYL 74 (712)
T ss_pred CcchhHH-HHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHH
Confidence 4333443 23899999999999975542 6899999999999998
No 20
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=48.52 E-value=20 Score=22.35 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhCCC
Q psy2848 20 RTQSINNAFSDLRECIPN 37 (86)
Q Consensus 20 R~~~lN~AF~~LR~~IP~ 37 (86)
|++.=|.+|+.|=.+||.
T Consensus 3 rl~~h~~~Fd~Ll~LIPA 20 (64)
T PF15459_consen 3 RLRAHSSFFDGLLSLIPA 20 (64)
T ss_pred HHHHHHHHHHHHHHhCCh
Confidence 678889999999999994
No 21
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=46.86 E-value=34 Score=25.09 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=22.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHhhCCC
Q psy2848 10 RNTANKKERRRTQSINNAFSDLRECIPN 37 (86)
Q Consensus 10 R~~aN~RER~R~~~lN~AF~~LR~~IP~ 37 (86)
|.....|||+|-.---.-|..||.+==+
T Consensus 12 rEnnk~RERrRRAIaakIfaGLR~~Gny 39 (150)
T PF05687_consen 12 RENNKRRERRRRAIAAKIFAGLRAHGNY 39 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444569999998889999999997543
No 22
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=33.00 E-value=50 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhC
Q psy2848 14 NKKERRRTQSINNAFSDLRECI 35 (86)
Q Consensus 14 N~RER~R~~~lN~AF~~LR~~I 35 (86)
..|+..|.+..+.|++.|+++|
T Consensus 133 g~R~~ir~~~~~~al~~L~~~L 154 (154)
T PF02464_consen 133 GDREEIRQRAVNQALDLLRRYL 154 (154)
T ss_dssp S-HHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 3788999999999999999875
No 23
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=31.54 E-value=42 Score=18.80 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2848 18 RRRTQSINNAFSDLRE 33 (86)
Q Consensus 18 R~R~~~lN~AF~~LR~ 33 (86)
..++..||.||+.|..
T Consensus 42 ~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 42 EEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3478999999999864
No 24
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=30.19 E-value=47 Score=18.19 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2848 17 ERRRTQSINNAFSDLR 32 (86)
Q Consensus 17 ER~R~~~lN~AF~~LR 32 (86)
.-.+++.||.||+.|.
T Consensus 39 ~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 39 AEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3457899999999885
No 25
>KOG4395|consensus
Probab=29.78 E-value=22 Score=28.35 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=30.6
Q ss_pred hHHHhHHhHHHHHHHHHHHHHHHHHHhhCC------CCCCCCCCCHHHHHHHHhhhhhh
Q psy2848 7 VKRRNTANKKERRRTQSINNAFSDLRECIP------NILETDDIISIDDFKADLSNHSS 59 (86)
Q Consensus 7 ~~rR~~aN~RER~R~~~lN~AF~~LR~~IP------~~p~~~KLSKietLrlAi~~~~~ 59 (86)
+.++..+|. ++.+| |.||| ..|...++.|+-+++.+..++..
T Consensus 80 ~~l~~~~n~-----a~e~~------~h~v~A~~~e~a~p~~~~l~~~~~~~~~k~~~~~ 127 (285)
T KOG4395|consen 80 KYLRKTANA-----AREIN------RHCVPAIKGEDAAPTNEKLTKITTLRLAKKYITM 127 (285)
T ss_pred HhhhhhhhH-----HHHHh------hhccccccccccCchhhhhhcccccccccCCCcC
Confidence 445666664 44455 99999 45667899999999999887744
No 26
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.12 E-value=1e+02 Score=24.62 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.2
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHh
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRE 33 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~ 33 (86)
+-.-|..++.=+..-|..||..|++||-
T Consensus 173 v~~l~~q~~k~~~~qv~~in~qlErLRL 200 (289)
T COG4985 173 VETLRDQVDKMVEQQVRVINSQLERLRL 200 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777788889999999999974
No 27
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=25.45 E-value=64 Score=24.69 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q psy2848 18 RRRTQSINNAFSDLRECIPNIL 39 (86)
Q Consensus 18 R~R~~~lN~AF~~LR~~IP~~p 39 (86)
|..++.|+.+|++|+.++-..|
T Consensus 82 k~k~r~i~~~~drL~r~~~~g~ 103 (214)
T PF06401_consen 82 KEKHREINDGYDRLRRVSHQGP 103 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 5678899999999997654333
No 28
>KOG3429|consensus
Probab=25.20 E-value=48 Score=24.81 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q psy2848 16 KERRRTQSINNAFSDLRECI 35 (86)
Q Consensus 16 RER~R~~~lN~AF~~LR~~I 35 (86)
+-|.|..+|-+||+.||..|
T Consensus 104 ~TRsq~~NiaDcleKlr~~I 123 (172)
T KOG3429|consen 104 KTRSQHKNIADCLEKLRDII 123 (172)
T ss_pred hhHHhhccHHHHHHHHHHHH
Confidence 45677788999999999987
No 29
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner. Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.
Probab=23.83 E-value=66 Score=21.06 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhC
Q psy2848 22 QSINNAFSDLRECI 35 (86)
Q Consensus 22 ~~lN~AF~~LR~~I 35 (86)
..||.||++||..-
T Consensus 3 ~~i~~aY~~Lr~~~ 16 (80)
T PF11408_consen 3 RHITSAYEKLREIS 16 (80)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 57999999999864
No 30
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=23.15 E-value=94 Score=21.07 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhC
Q psy2848 18 RRRTQSINNAFSDLRECI 35 (86)
Q Consensus 18 R~R~~~lN~AF~~LR~~I 35 (86)
+..++.||.+|++||.-|
T Consensus 78 ~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 78 RSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457999999999999877
No 31
>PRK03657 hypothetical protein; Validated
Probab=22.76 E-value=91 Score=22.67 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCC
Q psy2848 14 NKKERRRTQSINNAFSDLRECIP 36 (86)
Q Consensus 14 N~RER~R~~~lN~AF~~LR~~IP 36 (86)
..|+..|.+.++.||+.|++.|-
T Consensus 145 g~R~~ir~~a~~~al~~L~~~l~ 167 (170)
T PRK03657 145 GDCETVLAKAVRFALAQLLQLLL 167 (170)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998763
No 32
>PRK03661 hypothetical protein; Validated
Probab=22.50 E-value=94 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhC
Q psy2848 14 NKKERRRTQSINNAFSDLRECI 35 (86)
Q Consensus 14 N~RER~R~~~lN~AF~~LR~~I 35 (86)
..|+..|.+.++.|++-|++.|
T Consensus 140 g~R~~ir~~~~~~AL~~L~~~l 161 (164)
T PRK03661 140 GDRDAVRRQATAYALQTLWQQF 161 (164)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999875
Done!