Query psy2848
Match_columns 86
No_of_seqs 109 out of 437
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:25:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 4.9E-23 1.7E-27 126.8 7.0 54 9-62 2-55 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.8 2.1E-21 7.1E-26 122.2 7.3 56 6-62 9-64 (68)
3 2lfh_A DNA-binding protein inh 99.8 5.8E-22 2E-26 125.9 1.9 51 11-61 16-66 (68)
4 4aya_A DNA-binding protein inh 99.8 2.4E-19 8.1E-24 120.2 5.6 56 9-64 25-80 (97)
5 3u5v_A Protein MAX, transcript 99.6 5.1E-16 1.7E-20 99.2 3.2 58 7-64 3-61 (76)
6 1hlo_A Protein (transcription 99.5 7.2E-14 2.5E-18 88.5 5.8 57 4-61 7-63 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.2E-13 7.7E-18 88.4 6.1 56 7-62 4-59 (88)
8 1nkp_B MAX protein, MYC proto- 99.4 3.2E-13 1.1E-17 85.8 5.8 52 9-61 2-53 (83)
9 1nlw_A MAD protein, MAX dimeri 99.3 5.3E-12 1.8E-16 80.9 6.6 53 10-62 2-54 (80)
10 1an4_A Protein (upstream stimu 99.0 6.3E-11 2.1E-15 72.1 2.0 56 8-63 4-62 (65)
11 1am9_A Srebp-1A, protein (ster 99.0 6.7E-10 2.3E-14 70.9 6.1 54 6-61 3-56 (82)
12 4h10_A ARYL hydrocarbon recept 98.9 2.7E-09 9.1E-14 67.5 4.8 58 4-61 4-62 (73)
13 4h10_B Circadian locomoter out 98.8 1.7E-08 6E-13 63.8 6.3 56 6-63 5-60 (71)
14 1a0a_A BHLH, protein (phosphat 98.7 5.7E-09 1.9E-13 64.1 2.3 54 9-62 2-59 (63)
15 4ati_A MITF, microphthalmia-as 98.6 4.6E-08 1.6E-12 66.2 5.8 56 5-60 23-79 (118)
16 4f3l_A Mclock, circadian locom 98.2 2.3E-06 7.7E-11 64.3 5.3 55 6-62 9-63 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 97.7 3.3E-05 1.1E-09 58.8 4.8 59 4-62 8-67 (387)
18 4ath_A MITF, microphthalmia-as 96.0 0.015 5.1E-07 37.7 5.2 38 23-60 6-44 (83)
19 3muj_A Transcription factor CO 87.7 0.85 2.9E-05 31.8 4.7 34 23-56 95-129 (138)
20 1iur_A KIAA0730 protein; DNAJ 52.9 17 0.00058 22.4 3.6 23 19-41 58-80 (88)
21 3mlp_A Transcription factor CO 38.1 4 0.00014 32.7 -1.3 35 23-57 321-356 (402)
22 1faf_A Large T antigen; J doma 35.9 26 0.00087 20.9 2.4 17 19-35 50-66 (79)
23 2guz_A Mitochondrial import in 31.6 32 0.0011 19.9 2.3 15 20-34 53-67 (71)
24 1gk7_A Vimentin; intermediate 27.7 49 0.0017 17.9 2.5 17 15-31 2-18 (39)
25 2dn9_A DNAJ homolog subfamily 23.5 51 0.0018 19.0 2.2 15 19-33 48-62 (79)
26 2dmx_A DNAJ homolog subfamily 23.2 51 0.0017 19.6 2.2 16 19-34 51-66 (92)
27 2a9s_A Competence/damage-induc 23.2 53 0.0018 22.7 2.5 22 14-35 145-166 (171)
28 2ctr_A DNAJ homolog subfamily 23.0 52 0.0018 19.6 2.2 16 18-33 46-61 (88)
29 2cug_A Mkiaa0962 protein; DNAJ 22.4 54 0.0019 19.5 2.2 15 19-33 57-71 (88)
30 2p01_A Alpha-2-macroglobulin r 22.1 48 0.0017 25.8 2.3 37 18-54 191-231 (323)
31 2ej7_A HCG3 gene; HCG3 protein 20.9 61 0.0021 18.8 2.2 15 19-33 51-65 (82)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.88 E-value=4.9e-23 Score=126.79 Aligned_cols=54 Identities=26% Similarity=0.419 Sum_probs=51.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 9 RRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 9 rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~ 62 (86)
+|.++|+|||.||+.||.||+.||.+||+.|.++|||||+||++||.||...++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999977553
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.85 E-value=2.1e-21 Score=122.23 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=51.4
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~ 62 (86)
...+|.++|+|||.||+.||.||+.||.+||..| ++|||||+||+.||.||...+.
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999876 7899999999999999977543
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-22 Score=125.92 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=47.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 11 NTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 11 ~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~ 61 (86)
..||+|||.||++||.||+.||.+||+.|.++|||||||||+||.||...+
T Consensus 16 ~~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 16 GPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQ 66 (68)
T ss_dssp CCCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999997654
No 4
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=120.25 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=45.6
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhhcc
Q psy2848 9 RRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRKNK 64 (86)
Q Consensus 9 rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~~~ 64 (86)
|+..+..+||.||++||.||+.||.+||+.|.++|||||||||+||.||...+.-.
T Consensus 25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L 80 (97)
T 4aya_A 25 RSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIAL 80 (97)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 33344567799999999999999999999999999999999999999997655444
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.59 E-value=5.1e-16 Score=99.24 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=46.7
Q ss_pred hHHHhHHhHHHHHHHHHHHHHHHHHHhhCC-CCCCCCCCCHHHHHHHHhhhhhhhhhcc
Q psy2848 7 VKRRNTANKKERRRTQSINNAFSDLRECIP-NILETDDIISIDDFKADLSNHSSHRKNK 64 (86)
Q Consensus 7 ~~rR~~aN~RER~R~~~lN~AF~~LR~~IP-~~p~~~KLSKietLrlAi~~~~~~~~~~ 64 (86)
..+|..+|++||+|+..||.+|+.||.+|| ..+.++.+||++||+.||.||...+...
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l 61 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQV 61 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999 4677777899999999999997765544
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=7.2e-14 Score=88.55 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=50.6
Q ss_pred HHHhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 4 IRVVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 4 ~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~ 61 (86)
.....+|..+|.+||+|+..||.+|+.||.+||..+. .|+||++||+.||.||...+
T Consensus 7 ~~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~ 63 (80)
T 1hlo_A 7 ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMR 63 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999998764 58999999999999996654
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=2.2e-13 Score=88.44 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=51.5
Q ss_pred hHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 7 VKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 7 ~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~ 62 (86)
..+|...|..||+|...||.+|+.||.+||..+...|+||+.||+.||.||...+.
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~ 59 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998888999999999999999966543
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=3.2e-13 Score=85.78 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=47.5
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 9 RRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 9 rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~ 61 (86)
+|..+|.+||+|+..||.+|+.||.+||..+ +.|+||++||+.||.||...+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~ 53 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMR 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999876 468999999999999996654
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.30 E-value=5.3e-12 Score=80.91 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=49.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 10 RNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 10 R~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~ 62 (86)
|...|..||.|...||.+|+.||.+||..+.+.|+||+.||+.|+.||...+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~ 54 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLED 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999889999999999999999966543
No 10
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.04 E-value=6.3e-11 Score=72.13 Aligned_cols=56 Identities=27% Similarity=0.267 Sum_probs=48.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCCHHHHHHHHhhhhhhhhhc
Q psy2848 8 KRRNTANKKERRRTQSINNAFSDLRECIPNILET---DDIISIDDFKADLSNHSSHRKN 63 (86)
Q Consensus 8 ~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~---~KLSKietLrlAi~~~~~~~~~ 63 (86)
.+|...|..||.|...||.+|+.|+.+||..... .|++|..+|..||.|+...++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999976543 5899999999999999876543
No 11
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.01 E-value=6.7e-10 Score=70.85 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=48.2
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~ 61 (86)
...+|...|..||+|...||.+|..|+.+||. .+.|++|..+|..||.||...+
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~--~~~k~~Ka~IL~~Ai~YI~~Lq 56 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQ 56 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999996 3689999999999999996543
No 12
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.86 E-value=2.7e-09 Score=67.54 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=50.2
Q ss_pred HHHhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHhhhhhhhh
Q psy2848 4 IRVVKRRNTANKKERRRTQSINNAFSDLRECIPNI-LETDDIISIDDFKADLSNHSSHR 61 (86)
Q Consensus 4 ~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~-p~~~KLSKietLrlAi~~~~~~~ 61 (86)
++...+|...+.-||+|-..||..|++|+.+||.. ....|+.|+++|+.||.|+...+
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~ 62 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence 35567888999999999999999999999999953 34689999999999999997654
No 13
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.77 E-value=1.7e-08 Score=63.81 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=49.1
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhhc
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRKN 63 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~~ 63 (86)
...+|...|.-||+|-..||..|.+|+.+||. .+.|+.|..+|..||.|+...++.
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~ 60 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEI 60 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999993 457999999999999999776543
No 14
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.70 E-value=5.7e-09 Score=64.10 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHhhCCCCC----CCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 9 RRNTANKKERRRTQSINNAFSDLRECIPNIL----ETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 9 rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p----~~~KLSKietLrlAi~~~~~~~~ 62 (86)
+|...+.=||.|...||.+|++|+.+||... +..++||.+||-.||.|+...+.
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~ 59 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQ 59 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHH
Confidence 3556677899999999999999999999642 25799999999999999987654
No 15
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.65 E-value=4.6e-08 Score=66.18 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHhhhhhhh
Q psy2848 5 RVVKRRNTANKKERRRTQSINNAFSDLRECIPNIL-ETDDIISIDDFKADLSNHSSH 60 (86)
Q Consensus 5 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p-~~~KLSKietLrlAi~~~~~~ 60 (86)
+...+|...|.-||+|-..||..|..|+.+||... .+.|++|..+|..||.|+...
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~L 79 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKL 79 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHH
Confidence 34456778899999999999999999999999753 478999999999999999654
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.16 E-value=2.3e-06 Score=64.30 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=41.0
Q ss_pred HhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 6 VVKRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 6 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p~~~KLSKietLrlAi~~~~~~~~ 62 (86)
...+|...|.-||+|-..+|..|.+|+.+|| ....||.|..+|++||.|+...+.
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~ 63 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKE 63 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999 456899999999999999976554
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.72 E-value=3.3e-05 Score=58.79 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=49.1
Q ss_pred HHHhHHHhHHhHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHhhhhhhhhh
Q psy2848 4 IRVVKRRNTANKKERRRTQSINNAFSDLRECIPNIL-ETDDIISIDDFKADLSNHSSHRK 62 (86)
Q Consensus 4 ~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~IP~~p-~~~KLSKietLrlAi~~~~~~~~ 62 (86)
.|...+|...|.-||+|-..+|..|.+|+.+||... ...||.|..+|++||.|+...++
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 355667888899999999999999999999999633 45899999999999999976653
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=95.97 E-value=0.015 Score=37.67 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHhhhhhhh
Q psy2848 23 SINNAFSDLRECIPNI-LETDDIISIDDFKADLSNHSSH 60 (86)
Q Consensus 23 ~lN~AF~~LR~~IP~~-p~~~KLSKietLrlAi~~~~~~ 60 (86)
+||..+.+|...||.. ..+-|++|-.+|+.|+.||...
T Consensus 6 nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~L 44 (83)
T 4ath_A 6 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKL 44 (83)
T ss_dssp HHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHH
Confidence 6999999999999963 3578999999999999999554
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=87.71 E-value=0.85 Score=31.83 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhCCCCCCC-CCCCHHHHHHHHhhh
Q psy2848 23 SINNAFSDLRECIPNILET-DDIISIDDFKADLSN 56 (86)
Q Consensus 23 ~lN~AF~~LR~~IP~~p~~-~KLSKietLrlAi~~ 56 (86)
.|+-+|++|.+.||..|.| .+|.|--+|+-|..-
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l 129 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADL 129 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHH
Confidence 4788999999999999876 899999999987654
No 20
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=52.91 E-value=17 Score=22.43 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Q psy2848 19 RRTQSINNAFSDLRECIPNILET 41 (86)
Q Consensus 19 ~R~~~lN~AF~~LR~~IP~~p~~ 41 (86)
.+++.||.||+.|....+-.+..
T Consensus 58 ~~F~~I~~AYevL~~~~~r~~~~ 80 (88)
T 1iur_A 58 EVFKHLQNEINRLEKQAFLDQNA 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSSS
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 47899999999999888755543
No 21
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=38.14 E-value=4 Score=32.72 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhCCCCCCC-CCCCHHHHHHHHhhhh
Q psy2848 23 SINNAFSDLRECIPNILET-DDIISIDDFKADLSNH 57 (86)
Q Consensus 23 ~lN~AF~~LR~~IP~~p~~-~KLSKietLrlAi~~~ 57 (86)
.|.-+|++|.+.||..|.| .+|.|--+|+-|..-.
T Consensus 321 tIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ 356 (402)
T 3mlp_A 321 TIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLV 356 (402)
T ss_dssp TTTTTTTTTTTC-----------CHHHHHHHHHHHH
T ss_pred ccccchhhhcccCCCCCCChHhChHHHHHHHHHHHH
Confidence 3567899999999998876 8999999998876544
No 22
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=35.90 E-value=26 Score=20.90 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhC
Q psy2848 19 RRTQSINNAFSDLRECI 35 (86)
Q Consensus 19 ~R~~~lN~AF~~LR~~I 35 (86)
.+++.||.||+.|...+
T Consensus 50 ~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 50 ALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 47899999999998743
No 23
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=31.58 E-value=32 Score=19.95 Aligned_cols=15 Identities=27% Similarity=0.129 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhh
Q psy2848 20 RTQSINNAFSDLREC 34 (86)
Q Consensus 20 R~~~lN~AF~~LR~~ 34 (86)
+++.||.||+.|...
T Consensus 53 ~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 53 LATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 789999999999864
No 24
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=27.74 E-value=49 Score=17.92 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2848 15 KKERRRTQSINNAFSDL 31 (86)
Q Consensus 15 ~RER~R~~~lN~AF~~L 31 (86)
..|+.=|++||+-|+.-
T Consensus 2 ~~EKe~mq~LNdrlAsy 18 (39)
T 1gk7_A 2 SNEKVELQELNDRFANY 18 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 46778899999888753
No 25
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.48 E-value=51 Score=18.95 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHh
Q psy2848 19 RRTQSINNAFSDLRE 33 (86)
Q Consensus 19 ~R~~~lN~AF~~LR~ 33 (86)
.+++.||.||+.|..
T Consensus 48 ~~f~~i~~Ay~~L~d 62 (79)
T 2dn9_A 48 EKFSQLAEAYEVLSD 62 (79)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC
Confidence 478999999999864
No 26
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.17 E-value=51 Score=19.65 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy2848 19 RRTQSINNAFSDLREC 34 (86)
Q Consensus 19 ~R~~~lN~AF~~LR~~ 34 (86)
.+++.||.||+.|..-
T Consensus 51 ~~f~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 51 KKFKLVSEAYEVLSDS 66 (92)
T ss_dssp HHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHCCH
Confidence 4789999999998653
No 27
>2a9s_A Competence/damage-inducible protein CINA; APC5759, ATC1417, MCSG, protei structure initiative; 1.75A {Agrobacterium tumefaciens} SCOP: c.51.5.1
Probab=23.16 E-value=53 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhC
Q psy2848 14 NKKERRRTQSINNAFSDLRECI 35 (86)
Q Consensus 14 N~RER~R~~~lN~AF~~LR~~I 35 (86)
-.|+..|.+..+.|++.||+.|
T Consensus 145 g~R~~ir~~a~~~AL~~L~~~L 166 (171)
T 2a9s_A 145 IGRTEIRLATVRTALEMLIALN 166 (171)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999876
No 28
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.99 E-value=52 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2848 18 RRRTQSINNAFSDLRE 33 (86)
Q Consensus 18 R~R~~~lN~AF~~LR~ 33 (86)
..+++.||.||+.|..
T Consensus 46 ~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 46 EAKFREIAEAYETLSD 61 (88)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3578999999999975
No 29
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=22.39 E-value=54 Score=19.47 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHh
Q psy2848 19 RRTQSINNAFSDLRE 33 (86)
Q Consensus 19 ~R~~~lN~AF~~LR~ 33 (86)
.+++.||.||+.|..
T Consensus 57 ~~f~~i~~Ay~~L~d 71 (88)
T 2cug_A 57 DRFIQISKAYEILSN 71 (88)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC
Confidence 478999999999964
No 30
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=22.15 E-value=48 Score=25.83 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCC---CCCHHHHHH-HHh
Q psy2848 18 RRRTQSINNAFSDLRECIPNILETD---DIISIDDFK-ADL 54 (86)
Q Consensus 18 R~R~~~lN~AF~~LR~~IP~~p~~~---KLSKietLr-lAi 54 (86)
|.+++.||.+|++|+..+-..|..+ .=.||.-|. +|.
T Consensus 191 k~~~r~i~~~ydrL~rl~~~g~~~~~eF~EPkVq~LW~lA~ 231 (323)
T 2p01_A 191 KEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQ 231 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSCSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCcccCccChHHHHHHHHHH
Confidence 5678899999999999885555422 334666664 444
No 31
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.93 E-value=61 Score=18.76 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHh
Q psy2848 19 RRTQSINNAFSDLRE 33 (86)
Q Consensus 19 ~R~~~lN~AF~~LR~ 33 (86)
.+++.||.||+.|..
T Consensus 51 ~~f~~i~~Ay~~L~d 65 (82)
T 2ej7_A 51 RRFKQVAEAYEVLSD 65 (82)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHCC
Confidence 478999999999954
Done!