RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2848
         (86 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 37.5 bits (87), Expect = 9e-06
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 5  RVVKRRNTANKKERRRTQSINNAFSDLRECIPN 37
              RR  A  +ERRR   +N AF  L+    +
Sbjct: 8  TNADRRKAATMRERRRLSKVNEAFETLKRSTSS 40


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 35.2 bits (81), Expect = 7e-05
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 9  RRNTANKKERRRTQSINNAFSDLRECIPNILETDDIIS 46
          +R +    E+ R   +  A  +L   IP   +  ++ +
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSA 39


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 5  RVVKRRNTANKKERRRTQSINNAFSDLRECIPNI 38
           +  +R T N  ER+R   +  +F  LR+ IP +
Sbjct: 2  HMNVKRRTHNVLERQRRNELKRSFFALRDQIPEL 35


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 34.4 bits (79), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 8  KRRNTANKKERRRTQSINNAFSDLRECIPNILETD 42
          KRR   N+ ERRR   INN    L + IP+     
Sbjct: 4  KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMES 38


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 32.1 bits (73), Expect = 0.001
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 9  RRNTANKKERRRTQSINNAFSDLRECIP 36
          +R   N  ER+R   I ++F  LR+ +P
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVP 29


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 31.4 bits (71), Expect = 0.002
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 10 RNTANKKERRRTQSINNAFSDLRECIPNILETD 42
          R+T N+ E+ R   +  +   L+  +P   ++ 
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS 34


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 30.3 bits (68), Expect = 0.006
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 8  KRRNTANKKERRRTQSINNAFSDLRECIPNILETDDIISI 47
          ++R   N  E+R   SIN+   +L++ +       +  ++
Sbjct: 5  EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAV 44


>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 170

 Score = 26.8 bits (59), Expect = 0.24
 Identities = 6/46 (13%), Positives = 14/46 (30%)

Query: 26  NAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRKNKSQYDSPS 71
           + FS     +P I +    + +           +   +K Q+    
Sbjct: 82  HLFSKQGNDLPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQFRYAL 127


>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha
           subunit {Oxytricha nova [TaxId: 200597]}
          Length = 169

 Score = 25.3 bits (55), Expect = 0.89
 Identities = 10/45 (22%), Positives = 14/45 (31%)

Query: 26  NAFSDLRECIPNILETDDIISIDDFKADLSNHSSHRKNKSQYDSP 70
             ++   E +P I    DII +      L N          Y S 
Sbjct: 66  VLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSS 110


>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1,
          Pot1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 140

 Score = 24.4 bits (53), Expect = 2.1
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 28 FSDLRECIPNILETDDIISIDDFKADLSNHS 58
          FS   E +P I +  DI+     K  +    
Sbjct: 57 FSGNYEALPIIYKNGDIVRFHRLKIQVYKKE 87


>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 187

 Score = 22.9 bits (48), Expect = 7.5
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 42  DDIISIDDFKADLSNHSSHRKNKSQYDS 69
           D  +++ +F+       S  +  S YD 
Sbjct: 158 DGKLTLQEFQEGSKADPSIVQALSLYDG 185


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.126    0.341 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,869
Number of extensions: 10627
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 14
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.4 bits)