BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy285
(842 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 108/199 (54%), Gaps = 3/199 (1%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
+RLGE + T+ DC+ + CAPPV ++ + + L HE Y +DIALL+L +S
Sbjct: 175 IRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVP 234
Query: 527 WNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVTEDGRSSLELLAVQQKVFNSEECKARY 585
+ ++ P+CLP + + E +T V GWG TE+G SS LL + C Y
Sbjct: 235 FQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQAY 294
Query: 586 QELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYG-PTCGTKSE 644
+ P SQ+CVGG +D+CKGDSGGPL + + G+VS G TCG S
Sbjct: 295 RRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISL 354
Query: 645 NPGVYTRMTYFLQWILDHL 663
PG+YT + ++QWI D +
Sbjct: 355 -PGLYTNVGEYVQWITDTM 372
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 111/264 (42%), Gaps = 66/264 (25%)
Query: 203 CGLASEQRIIGGYVAKLGSIPWIARIAYSR--------------------TPHCATNPEQ 242
CG QR+ GY KL S PW+A + Y + HC +
Sbjct: 111 CGNFLSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQN 170
Query: 243 -ISSVRLGEHDANSDPDCSPDHRQ--CAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRL 299
+ +RLGEH +++ DC R+ CAPPV ++ + K + HE + ++ +DIALL+L
Sbjct: 171 DLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDAR-HIMHDIALLKL 229
Query: 300 ERPPRLNGTHLMSCC----------------YYL---AYADNGISID------------- 327
R H+ C Y++ +NG S D
Sbjct: 230 NRSVPFQ-KHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRS 288
Query: 328 -----YNSG----QMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS 378
Y Q+CVGG +DSC GDSGGPL + + + G+VS G +
Sbjct: 289 ACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVT 348
Query: 379 CGVYEIPGVYSRTSYFLRWILDHL 402
CG +PG+Y+ +++WI D +
Sbjct: 349 CGQISLPGLYTNVGEYVQWITDTM 372
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 74/172 (43%), Gaps = 33/172 (19%)
Query: 668 NIPEVHYVQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVYDRYLCT 726
++P +++P+CLP D LK E T V GWG TE S +LL N + R C+
Sbjct: 232 SVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACS 291
Query: 727 AIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSG 786
Y R QLCVGG +DSC GDSG
Sbjct: 292 QAYRRA--------------------------------VPLSQLCVGGGDLQDSCKGDSG 319
Query: 787 GPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GPL + + + GIVS G TCG + +PG+YT +++WI T
Sbjct: 320 GPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDT 371
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMG 122
+TE+ S LL + C Y++ P SQ+CVGG +DSC GDSGGPL
Sbjct: 267 TTENGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPA 326
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDEWILD 175
+ + + G+VS G CG+ PG+YT + ++QWI D + +L+
Sbjct: 327 QYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGLLE 379
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 109/201 (54%), Gaps = 20/201 (9%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAP--PVQDIKVIQFLTHENYTDSGTKN---DIALLRL 521
VRLGE N TDPDC VC P P+ D+ + + + H +Y D G+K+ DIAL+RL
Sbjct: 84 VRLGEWNTATDPDC--YGAVRVCVPDKPI-DLGIEETIQHPDYVD-GSKDRYHDIALIRL 139
Query: 522 EKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEEC 581
+ E+ Y+ PVCLP N + + V GWG TE G+ S + V ++E+C
Sbjct: 140 NRQVEFTNYIRPVCLPQPNEEVQ--VGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQC 197
Query: 582 KARYQELD---PSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT 638
+ SSQ+C GG+ KD+C GDSGGPL + +L GLVS+G T
Sbjct: 198 AKTFGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPL-----LAERANQQFFLEGLVSFGAT 252
Query: 639 CGTKSENPGVYTRMTYFLQWI 659
CGT+ PG+YT++ + WI
Sbjct: 253 CGTEGW-PGIYTKVGKYRDWI 272
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 102/283 (36%), Gaps = 87/283 (30%)
Query: 190 QHKNWHLLPPKDKCGLASE-QRIIGGYVAKLGSIPWIARIAYSRT--------------- 233
+++ LLP + CG E +I+ G PW A I Y +
Sbjct: 3 RNRRPELLP--NDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINN 60
Query: 234 ------PHCATNP-----EQISSVRLGEHDANSDPDCSPDHRQCAP--PVQDIRVVKVIS 280
HC ++ VRLGE + +DPDC R C P P+ D+ + + I
Sbjct: 61 RYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPI-DLGIEETIQ 119
Query: 281 H-EHFSGEPNMRNDIALLRLERPPRLNG-------------------------------- 307
H ++ G + +DIAL+RL R
Sbjct: 120 HPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQ 179
Query: 308 ------------THLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWM 355
H C A + S Q+C GG KDSC GDSGGPL
Sbjct: 180 YSTIKQKLAVPVVHAEQCAKTFGAA----GVRVRSSQLCAGGEKAKDSCGGDSGGPL--- 232
Query: 356 GSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
+ + +L GLVS G A+CG PG+Y++ + WI
Sbjct: 233 --LAERANQQFFLEGLVSFG-ATCGTEGWPGIYTKVGKYRDWI 272
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 43/167 (25%)
Query: 672 VHYVQPVCLPYGDGLKYNFE---GKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAI 728
+Y++PVCLP + N E G+ V GWG TE S I + V C
Sbjct: 146 TNYIRPVCLP-----QPNEEVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKT 200
Query: 729 YERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGP 788
+ G+ + ++ QLC GG+ KDSC GDSGGP
Sbjct: 201 FGAAGVRVRSS-----------------------------QLCAGGEKAKDSCGGDSGGP 231
Query: 789 LMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L+ + + +L G+VS G +TCG PG+YT+ + WI
Sbjct: 232 LL-----AERANQQFFLEGLVSFG-ATCGTEGWPGIYTKVGKYRDWI 272
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Query: 62 FSTEDKRPSLELLAVQQ--KVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLT 119
+ST ++ ++ ++ +Q K F + + R SSQ+C GG+ KDSC GDSGGPL
Sbjct: 180 YSTIKQKLAVPVVHAEQCAKTFGAAGVRVR------SSQLCAGGEKAKDSCGGDSGGPL- 232
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ + +L GLVS+G CG PG+YT++ + WI
Sbjct: 233 ----LAERANQQFFLEGLVSFGAT-CGTEGWPGIYTKVGKYRDWI 272
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 20/172 (11%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLP-YGNAMTRNFENENTI 552
Q I V + + HEN+ + NDI+LL+L S +N V P+ LP G+ T + I
Sbjct: 75 QIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATG-----DVI 129
Query: 553 VAGWGVTEDGRSSLELL-AVQQKVFNSEECKARY---QELDPSSQICVG-GKVGKDACKG 607
V GWG T +G ++ ++L V + + E+C+A Y + LD S IC G + GKD+C+G
Sbjct: 130 VTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILD--SMICAGVPEGGKDSCQG 187
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
DSGGPL ++ YL G+VS+G C + PGVYT ++Y + WI
Sbjct: 188 DSGGPLA------ASDTGSTYLAGIVSWGYGC-ARPGYPGVYTEVSYHVDWI 232
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 73 LLAVQQKVFNSEKCKARY---QKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAI 128
L V + + E C+A Y + LD S IC G + GKDSC GDSGGPL ++
Sbjct: 146 LQKVTVPLVSDEDCRADYGADEILD--SMICAGVPEGGKDSCQGDSGGPLA------ASD 197
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ YL G+VS+G C + PGVYT ++Y + WI
Sbjct: 198 TGSTYLAGIVSWG-YGCARPGYPGVYTEVSYHVDWI 232
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 63/164 (38%), Gaps = 42/164 (25%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWGLT-EKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
V P+ LP + + D IV GWG T E +L V + C A Y +
Sbjct: 112 VAPIALPE----QGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADE 167
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMG 793
I D +C + E GKDSC GDSGGPL
Sbjct: 168 I------------LDSMICAGVPEG------------------GKDSCQGDSGGPLA--- 194
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILA 837
S + TYL GIVS G C PGVYT SY + WI A
Sbjct: 195 ---ASDTGSTYLAGIVSWGYG-CARPGYPGVYTEVSYHVDWIKA 234
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 61/166 (36%), Gaps = 46/166 (27%)
Query: 271 QDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNS 330
Q I V K+I HE+F + NDI+LL+L N + G I
Sbjct: 75 QIITVSKIILHENFDYNL-LDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGW 133
Query: 331 GQMCVGGNV--------------------------------------GKDSCNGDSGGPL 352
G GGN GKDSC GDSGGPL
Sbjct: 134 GTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPL 193
Query: 353 TWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
++ + TYL G+VS G C PGVY+ SY + WI
Sbjct: 194 A------ASDTGSTYLAGIVSWG-YGCARPGYPGVYTEVSYHVDWI 232
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
P IK I + H+NY S +DIAL++L+ E+ + P+ LP + + N
Sbjct: 72 PFSQIKEI--IIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTN--C 127
Query: 552 IVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGD 608
V GWG + E G L V + +EEC+ RYQ+ + + +C G K G KDACKGD
Sbjct: 128 WVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGD 187
Query: 609 SGGPLTWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
SGGPL + N L+G+ S+G C + E PGVYT++ ++ WIL+ +
Sbjct: 188 SGGPL---------VCKHNGMWRLVGITSWGEGC-ARREQPGVYTKVAEYMDWILEKTQ 236
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLT 119
FS E L V + +E+C+ RYQ + + +C G K G KD+C GDSGGPL
Sbjct: 134 FSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPLV 193
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ L+G+ S+G E C + E PGVYT++ ++ WIL+ +
Sbjct: 194 ------CKHNGMWRLVGITSWG-EGCARREQPGVYTKVAEYMDWILEKTQ 236
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 20/79 (25%)
Query: 770 LCVGGKVG-KDSCNGDSGGPL------MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIP 822
+C G K G KD+C GDSGGPL MW L+GI S G C P
Sbjct: 172 VCAGYKEGGKDACKGDSGGPLVCKHNGMWR------------LVGITSWGEG-CARREQP 218
Query: 823 GVYTRTSYFLRWILATPEA 841
GVYT+ + ++ WIL ++
Sbjct: 219 GVYTKVAEYMDWILEKTQS 237
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL + L+G+ S G C E PGVY++ + ++ WIL
Sbjct: 180 GKDACKGDSGGPLV------CKHNGMWRLVGITSWGEG-CARREQPGVYTKVAEYMDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
+++S +VRLGE D + E+ D+ + + H NY+ S T NDIAL
Sbjct: 44 MDESKKLLVRLGEY------DLRRWEKWEL------DLDIKEVFVHPNYSKSTTDNDIAL 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTR--NFENENTIVAGWGV-----TEDGRSSLELLA- 570
L L + + + P+CLP R N + T+V GWG E R+ +L
Sbjct: 92 LHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNF 151
Query: 571 VQQKVFNSEECKARYQELDPSSQICVGGKVG--KDACKGDSGGPLTWMGSFDSAILARNY 628
++ V EC + + +C G +G +DAC+GDSGGP+ + SF +
Sbjct: 152 IKIPVVPHNECSEVMSNMVSENMLC-AGILGDRQDACEGDSGGPM--VASFHGTW----F 204
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
L+GLVS+G CG N GVYT+++ +L WI H+ D+
Sbjct: 205 LVGLVSWGEGCGL-LHNYGVYTKVSRYLDWIHGHIRDK 241
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 96 SSQICVGGKVG--KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGV 153
S + G +G +D+C GDSGGP+ ++ +L+GLVS+G E CG N GV
Sbjct: 171 SENMLCAGILGDRQDACEGDSGGPMV------ASFHGTWFLVGLVSWG-EGCGLLHNYGV 223
Query: 154 YTRMTYFLQWILDHLEDE 171
YT+++ +L WI H+ D+
Sbjct: 224 YTKVSRYLDWIHGHIRDK 241
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 84/259 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
+I G + + G PW + S+ HC +++ VRLGE+D
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLL-VRLGEYDL 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
R+ D+ + +V H ++S + NDIALL L +P L+ T + C
Sbjct: 60 ----------RRWEKWELDLDIKEVFVHPNYS-KSTTDNDIALLHLAQPATLSQTIVPIC 108
Query: 314 C-----------------------YYLA----------YADNGISI-------------D 327
Y+ + + N I I +
Sbjct: 109 LPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN 168
Query: 328 YNSGQMCVGGNVG--KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
S M G +G +D+C GDSGGP+ ++ +L+GLVS G CG+
Sbjct: 169 MVSENMLCAGILGDRQDACEGDSGGPMV------ASFHGTWFLVGLVSWGEG-CGLLHNY 221
Query: 386 GVYSRTSYFLRWILDHLDD 404
GVY++ S +L WI H+ D
Sbjct: 222 GVYTKVSRYLDWIHGHIRD 240
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 41/175 (23%)
Query: 675 VQPVCLPYGDGL---KYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYER 731
+ P+CLP GL + N G++T+V GWG + N+ ++ +
Sbjct: 104 IVPICLP-DSGLAERELNQAGQETLVTGWGYHSSREKE---AKRNRTFVLNFIKIPVVPH 159
Query: 732 NGIS-IDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
N S + +N +V + LC I +G + +D+C GDSGGP++
Sbjct: 160 NECSEVMSN-----MVSENMLCAGI----------------LGDR--QDACEGDSGGPMV 196
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI---LATPEAP 842
S +L+G+VS G CG+L GVYT+ S +L WI + EAP
Sbjct: 197 ------ASFHGTWFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGHIRDKEAP 244
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 30/217 (13%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
+++S +VRLGE D + E+ D+ + + H NY+ S T NDIAL
Sbjct: 44 MDESKKLLVRLGEY------DLRRWEKWEL------DLDIKEVFVHPNYSKSTTDNDIAL 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTR--NFENENTIVAGWGV-----TEDGRSSLELLA- 570
L L + + + P+CLP R N + T+V GWG E R+ +L
Sbjct: 92 LHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNF 151
Query: 571 VQQKVFNSEECKARYQELDPSSQICVGGKVG--KDACKGDSGGPLTWMGSFDSAILARNY 628
++ V EC + + +C G +G +DAC+GDSGGP+ + SF +
Sbjct: 152 IKIPVVPHNECSEVMSNMVSENMLC-AGILGDRQDACEGDSGGPM--VASFHGTW----F 204
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
L+GLVS+G CG N GVYT+++ +L WI H+ D
Sbjct: 205 LVGLVSWGEGCGLL-HNYGVYTKVSRYLDWIHGHIRD 240
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 96 SSQICVGGKVG--KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGV 153
S + G +G +D+C GDSGGP+ ++ +L+GLVS+G E CG N GV
Sbjct: 171 SENMLCAGILGDRQDACEGDSGGPMV------ASFHGTWFLVGLVSWG-EGCGLLHNYGV 223
Query: 154 YTRMTYFLQWILDHLED 170
YT+++ +L WI H+ D
Sbjct: 224 YTKVSRYLDWIHGHIRD 240
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 84/259 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
+I G + + G PW + S+ HC +++ VRLGE+D
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLL-VRLGEYDL 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
R+ D+ + +V H ++S + NDIALL L +P L+ T + C
Sbjct: 60 ----------RRWEKWELDLDIKEVFVHPNYS-KSTTDNDIALLHLAQPATLSQTIVPIC 108
Query: 314 C-----------------------YYLA----------YADNGISI-------------D 327
Y+ + + N I I +
Sbjct: 109 LPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN 168
Query: 328 YNSGQMCVGGNVG--KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
S M G +G +D+C GDSGGP+ ++ +L+GLVS G CG+
Sbjct: 169 MVSENMLCAGILGDRQDACEGDSGGPMV------ASFHGTWFLVGLVSWGEG-CGLLHNY 221
Query: 386 GVYSRTSYFLRWILDHLDD 404
GVY++ S +L WI H+ D
Sbjct: 222 GVYTKVSRYLDWIHGHIRD 240
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 48/170 (28%)
Query: 675 VQPVCLPYGDGL---KYNFEGKDTIVAGWGL------TEKKIPSHILLGVNQLVYDRYLC 725
+ P+CLP GL + N G++T+V GWG K+ + +L + V C
Sbjct: 104 IVPICLP-DSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNEC 162
Query: 726 TAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDS 785
+ + +V + LC I +G + +D+C GDS
Sbjct: 163 SEVMSN-------------MVSENMLCAGI----------------LGDR--QDACEGDS 191
Query: 786 GGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GGP++ S +L+G+VS G CG+L GVYT+ S +L WI
Sbjct: 192 GGPMV------ASFHGTWFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWI 234
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 20/179 (11%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
P IK I + H+NY S +DIAL++L+ + + P+ LP + + N
Sbjct: 72 PFSQIKEI--IIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTN--C 127
Query: 552 IVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGD 608
V GWG + E G L V + +EEC+ RYQ+ + + +C G K G KDACKGD
Sbjct: 128 WVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGD 187
Query: 609 SGGPLTWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
SGGPL + N L+G+ S+G C + E PGVYT++ ++ WIL+ +
Sbjct: 188 SGGPL---------VCKHNGMWRLVGITSWGEGC-ARREQPGVYTKVAEYMDWILEKTQ 236
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLT 119
FS E L V + +E+C+ RYQ + + +C G K G KD+C GDSGGPL
Sbjct: 134 FSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPLV 193
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ L+G+ S+G E C + E PGVYT++ ++ WIL+ +
Sbjct: 194 ------CKHNGMWRLVGITSWG-EGCARREQPGVYTKVAEYMDWILEKTQ 236
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 20/79 (25%)
Query: 770 LCVGGKVG-KDSCNGDSGGPL------MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIP 822
+C G K G KD+C GDSGGPL MW L+GI S G C P
Sbjct: 172 VCAGYKEGGKDACKGDSGGPLVCKHNGMWR------------LVGITSWGEG-CARREQP 218
Query: 823 GVYTRTSYFLRWILATPEA 841
GVYT+ + ++ WIL ++
Sbjct: 219 GVYTKVAEYMDWILEKTQS 237
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL + L+G+ S G C E PGVY++ + ++ WIL
Sbjct: 180 GKDACKGDSGGPLV------CKHNGMWRLVGITSWGEG-CARREQPGVYTKVAEYMDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 10/175 (5%)
Query: 490 APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
AP VQ+ ++ + ++H + D DIALL LEK E++ V P+CLP +A +
Sbjct: 72 APGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLP--DASHVFPAGK 129
Query: 550 NTIVAGWGVTE-DGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKG 607
V GWG T+ G +L L + +V N C+ + +CVG G D+C+G
Sbjct: 130 AIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQG 189
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
DSGGPL+ S ++ R + G+VS+G C +++ PGVYTR+ F WI ++
Sbjct: 190 DSGGPLS---SVEAD--GRIFQAGVVSWGDGCAQRNK-PGVYTRLPLFRDWIKEN 238
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 56/203 (27%)
Query: 238 TNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALL 297
++P Q ++ LG HD + ++ AP VQ+ R+ ++ISH F+ + DIALL
Sbjct: 53 SDPTQWTAF-LGLHDQS---------QRSAPGVQERRLKRIISHPFFN-DFTFDYDIALL 101
Query: 298 RLERPPRL----------NGTHL--------MSCCYYLAYADNGISI------------- 326
LE+P + +H+ ++ + Y G I
Sbjct: 102 ELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTT 161
Query: 327 -------DYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS 378
MCVG + G DSC GDSGGPL+ R + G+VS G
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLS-----SVEADGRIFQAGVVSWGDG- 215
Query: 379 CGVYEIPGVYSRTSYFLRWILDH 401
C PGVY+R F WI ++
Sbjct: 216 CAQRNKPGVYTRLPLFRDWIKEN 238
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAI 128
+L L + +V N C+ + +CVG G DSC GDSGGPL+
Sbjct: 146 ALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLS-----SVEA 200
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
R + G+VS+G + C + PGVYTR+ F WI ++
Sbjct: 201 DGRIFQAGVVSWG-DGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 76/209 (36%), Gaps = 55/209 (26%)
Query: 641 TKSENPGVYTRMT-------YFLQWILDH----LEDEVNIPEVHYVQPVCLPYGDGLKYN 689
++ PGV R +F + D+ LE E V+P+CLP D
Sbjct: 68 SQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLP--DASHVF 125
Query: 690 FEGKDTIVAGWGLTEKKIPSHILLGVNQL-VYDRYLCTAIYERNGISIDTNKGQLCLVYD 748
GK V GWG T+ ++L ++ V ++ C + + +
Sbjct: 126 PAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQ-------------ITP 172
Query: 749 RYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISA--RTYLL 806
R +C G DSC GDSGGPL S+ A R +
Sbjct: 173 RMMCVGFLSG------------------GVDSCQGDSGGPL-------SSVEADGRIFQA 207
Query: 807 GIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G+VS G C PGVYTR F WI
Sbjct: 208 GVVSWG-DGCAQRNKPGVYTRLPLFRDWI 235
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 490 APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
AP VQ+ ++ + ++H + D DIALL LEK E++ V P+CLP +A +
Sbjct: 72 APGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLP--DASHVFPAGK 129
Query: 550 NTIVAGWGVTE-DGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKG 607
V GWG T+ G +L L + +V C+ + +CVG G D+C+G
Sbjct: 130 AIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENLLPQQITPRMMCVGFLSGGVDSCQG 189
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
DSGGPL+ S ++ R + G+VS+G C +++ PGVYTR+ F WI ++
Sbjct: 190 DSGGPLS---SVEAD--GRIFQAGVVSWGDGCAQRNK-PGVYTRLPLFRDWIKEN 238
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 56/203 (27%)
Query: 238 TNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALL 297
++P Q ++ LG HD + ++ AP VQ+ R+ ++ISH F+ + DIALL
Sbjct: 53 SDPTQWTAF-LGLHDQS---------QRSAPGVQERRLKRIISHPFFN-DFTFDYDIALL 101
Query: 298 RLERPPRL----------NGTHL--------MSCCYYLAYADNGISI------------- 326
LE+P + +H+ ++ + Y G I
Sbjct: 102 ELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTT 161
Query: 327 -------DYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS 378
MCVG + G DSC GDSGGPL+ R + G+VS G
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLS-----SVEADGRIFQAGVVSWGDG- 215
Query: 379 CGVYEIPGVYSRTSYFLRWILDH 401
C PGVY+R F WI ++
Sbjct: 216 CAQRNKPGVYTRLPLFRDWIKEN 238
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAI 128
+L L + +V C+ + +CVG G DSC GDSGGPL+
Sbjct: 146 ALILQKGEIRVIQQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLS-----SVEA 200
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
R + G+VS+G + C + PGVYTR+ F WI ++
Sbjct: 201 DGRIFQAGVVSWG-DGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 75/209 (35%), Gaps = 55/209 (26%)
Query: 641 TKSENPGVYTRMT-------YFLQWILDH----LEDEVNIPEVHYVQPVCLPYGDGLKYN 689
++ PGV R +F + D+ LE E V+P+CLP D
Sbjct: 68 SQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLP--DASHVF 125
Query: 690 FEGKDTIVAGWGLTEKKIPSHILLGVNQL-VYDRYLCTAIYERNGISIDTNKGQLCLVYD 748
GK V GWG T+ ++L ++ V + C + + +
Sbjct: 126 PAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENLLPQQ-------------ITP 172
Query: 749 RYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISA--RTYLL 806
R +C G DSC GDSGGPL S+ A R +
Sbjct: 173 RMMCVGFLSG------------------GVDSCQGDSGGPL-------SSVEADGRIFQA 207
Query: 807 GIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G+VS G C PGVYTR F WI
Sbjct: 208 GVVSWG-DGCAQRNKPGVYTRLPLFRDWI 235
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 29/198 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 51 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 98
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELL---AVQQKVFNSEECKA 583
N V V LP A E ++++GWG T+ SS L +++ V + CK+
Sbjct: 99 LNSRVATVSLPRSCAAA---GTECSLISGWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKS 155
Query: 584 RYQELDPSSQICVGG-KVGKDAC-KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGT 641
Y + ICVG + GKD+C +GDSGGP+ + + L G+VS+G C
Sbjct: 156 SYPGQITGNMICVGFLEGGKDSCSQGDSGGPV---------VCSNGQLQGIVSWGYGCSA 206
Query: 642 KSENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 207 QKNKPGVYTKVCNYVNWI 224
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSC-YGDSGGPLTW 120
S+ PSL +++ V + CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 130 SSGSSYPSLLQCSLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCSQGDSGGPV-- 187
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ + L G+VS+G + PGVYT++ ++ WI
Sbjct: 188 -------VCSNGQLQGIVSWGYGCSAQKNKPGVYTKVCNYVNWI 224
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 75/194 (38%), Gaps = 61/194 (31%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ D + Q I K+I+H +F+G + NDI L++L P L
Sbjct: 51 VRLGEHNI----DVLEGNEQ------FINAAKIITHPNFNGN-TLDNDIMLIKLSSPATL 99
Query: 306 N---------------GTH-------------------LMSCCYYL-AYADNGISIDY-- 328
N GT L+ C +D+ Y
Sbjct: 100 NSRVATVSLPRSCAAAGTECSLISGWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKSSYPG 159
Query: 329 --NSGQMCVGG-NVGKDSCN-GDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
+CVG GKDSC+ GDSGGP+ + + L G+VS G
Sbjct: 160 QITGNMICVGFLEGGKDSCSQGDSGGPV---------VCSNGQLQGIVSWGYGCSAQKNK 210
Query: 385 PGVYSRTSYFLRWI 398
PGVY++ ++ WI
Sbjct: 211 PGVYTKVCNYVNWI 224
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 770 LCVGG-KVGKDSCN-GDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
+CVG + GKDSC+ GDSGGP+ + + L GIVS G PGVYT+
Sbjct: 166 ICVGFLEGGKDSCSQGDSGGPV---------VCSNGQLQGIVSWGYGCSAQKNKPGVYTK 216
Query: 828 TSYFLRWILATPEA 841
++ WI T A
Sbjct: 217 VCNYVNWIQQTIAA 230
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 48 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V V LP A +++GWG T+ SS L ++ V ++ CK+
Sbjct: 96 LNSRVATVSLPRSCAAA----GTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + ICVG + GKD+C+GDSGGP ++ L G+VS+G C K+
Sbjct: 152 YPGQITGNMICVGFLQGGKDSCQGDSGGP----------VVCNGQLQGIVSWGYGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVNWI 216
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V ++ CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 126 SSGSSYPSL-LQCLKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPVVCN 184
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 185 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 216
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 88/241 (36%), Gaps = 78/241 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR---------------TPHCATNPEQISSVRLGEHDANS 255
I+GGY SIP+ + HC + Q VRLGEH+
Sbjct: 1 IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
D + Q I K+I+H +F+G + NDI L++L P LN
Sbjct: 56 --DVLEGNEQ------FINAAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP 106
Query: 307 ------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCVGG- 337
GT L+ C +++ Y +CVG
Sbjct: 107 RSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGNMICVGFL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ W
Sbjct: 167 QGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKVCNYVNW 215
Query: 398 I 398
I
Sbjct: 216 I 216
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 161 ICVGFLQGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVNWIQQTIAA 222
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q + V H Y + +ND+AL+ L +SP N +V P+CLP G E IV
Sbjct: 83 QHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQ----EGAMVIV 138
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPS---SQICVGGKV-GKDACKGDS 609
+GWG R L+ ++ + + C+ Y L IC G K GKDAC GDS
Sbjct: 139 SGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDS 198
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGP+ + + + YL+G VS+G CG K + GVY+ + + WI
Sbjct: 199 GGPMVTL----NRERGQWYLVGTVSWGDDCG-KKDRYGVYSYIHHNKDWI 243
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPS---SQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAI 128
L+ ++ + + C+ Y L IC G K G KD+C GDSGGP+ + +
Sbjct: 153 LMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTL----NRE 208
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ YL+G VS+G +DCGK + GVY+ + + WI
Sbjct: 209 RGQWYLVGTVSWG-DDCGKKDRYGVYSYIHHNKDWI 243
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 39/163 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
+V P+CLP G EG IV+GWG + L+ + + D C Y
Sbjct: 119 FVMPICLPEGP----QQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAP-- 172
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWM 792
+ + +C G K G KD+C GDSGGP++
Sbjct: 173 ---------------------------LKKKVTRDMICAGEKEGGKDACAGDSGGPMV-- 203
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ +R + YL+G VS G CG GVY+ + WI
Sbjct: 204 -TLNRE-RGQWYLVGTVSWG-DDCGKKDRYGVYSYIHHNKDWI 243
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ + + + YL+G VS G CG + GVYS + WI
Sbjct: 190 GKDACAGDSGGPMVTL----NRERGQWYLVGTVSWG-DDCGKKDRYGVYSYIHHNKDWI 243
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 56 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 103
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V V LP A +++GWG T+ SS L ++ V + CK+
Sbjct: 104 LNSRVATVSLPRSCAAA----GTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS 159
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + ICVG + GKD+C+GDSGGP ++ L G+VS+G C K+
Sbjct: 160 YPGQITGNMICVGFLEGGKDSCQGDSGGP----------VVCNGQLQGIVSWGYGCAQKN 209
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 210 K-PGVYTKVCNYVNWI 224
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V + CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 134 SSGSSYPSL-LQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCN 192
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 193 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 224
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 90/244 (36%), Gaps = 78/244 (31%)
Query: 208 EQRIIGGYVAKLGSIPWIARIAYSR---------------TPHCATNPEQISSVRLGEHD 252
+ +I+GGY SIP+ + HC + Q VRLGEH+
Sbjct: 6 DDKIVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQ---VRLGEHN 62
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
D + Q I K+I+H +F+G + NDI L++L P LN
Sbjct: 63 I----DVLEGNEQ------FINAAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATV 111
Query: 307 ---------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCV 335
GT L+ C +D+ Y +CV
Sbjct: 112 SLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICV 171
Query: 336 GG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYF 394
G GKDSC GDSGGP+ G L G+VS G C PGVY++ +
Sbjct: 172 GFLEGGKDSCQGDSGGPVVCNGQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNY 220
Query: 395 LRWI 398
+ WI
Sbjct: 221 VNWI 224
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 169 ICVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKV 217
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 218 CNYVNWIQQTIAA 230
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q + V H Y + +ND+AL+ L +SP N +V P+CLP G E IV
Sbjct: 238 QHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQ----EGAMVIV 293
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPS---SQICVGGKV-GKDACKGDS 609
+GWG R L+ ++ + + C+ Y L IC G K GKDAC GDS
Sbjct: 294 SGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDS 353
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGP+ + + + YL+G VS+G CG K + GVY+ + + WI
Sbjct: 354 GGPMVTL----NRERGQWYLVGTVSWGDDCG-KKDRYGVYSYIHHNKDWI 398
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPS---SQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAI 128
L+ ++ + + C+ Y L IC G K G KD+C GDSGGP+ + +
Sbjct: 308 LMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTL----NRE 363
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ YL+G VS+G +DCGK + GVY+ + + WI
Sbjct: 364 RGQWYLVGTVSWG-DDCGKKDRYGVYSYIHHNKDWI 398
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 39/163 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
+V P+CLP G EG IV+GWG + L+ + + D C Y
Sbjct: 274 FVMPICLPEGP----QQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAP-- 327
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWM 792
+ + +C G K G KD+C GDSGGP++
Sbjct: 328 ---------------------------LKKKVTRDMICAGEKEGGKDACAGDSGGPMV-- 358
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ +R + YL+G VS G CG GVY+ + WI
Sbjct: 359 -TLNRE-RGQWYLVGTVSWG-DDCGKKDRYGVYSYIHHNKDWI 398
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ + + + YL+G VS G CG + GVYS + WI
Sbjct: 345 GKDACAGDSGGPMVTL----NRERGQWYLVGTVSWG-DDCGKKDRYGVYSYIHHNKDWI 398
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 48 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V V LP A +++GWG T+ SS L ++ V + CK+
Sbjct: 96 LNSRVATVSLPRSCAAA----GTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + ICVG + GKD+C+GDSGGP ++ L G+VS+G C K+
Sbjct: 152 YPGQITGNMICVGFLEGGKDSCQGDSGGP----------VVCNGQLQGIVSWGYGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVNWI 216
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V + CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 126 SSGSSYPSL-LQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCN 184
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 185 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 216
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 87/240 (36%), Gaps = 78/240 (32%)
Query: 212 IGGYVAKLGSIPWIARIAYSR---------------TPHCATNPEQISSVRLGEHDANSD 256
+GGY SIP+ + HC + Q VRLGEH+
Sbjct: 2 VGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQ---VRLGEHNI--- 55
Query: 257 PDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN---------- 306
D + Q I K+I+H +F+G + NDI L++L P LN
Sbjct: 56 -DVLEGNEQ------FINAAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLPR 107
Query: 307 -----GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCVGG-N 338
GT L+ C +D+ Y +CVG
Sbjct: 108 SCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLE 167
Query: 339 VGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ WI
Sbjct: 168 GGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKVCNYVNWI 216
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 161 ICVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVNWIQQTIAA 222
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 48 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V V LP A +++GWG T+ SS L ++ V + CK+
Sbjct: 96 LNSRVATVSLPRSCAAA----GTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + ICVG + GKD+C+GDSGGP ++ L G+VS+G C K+
Sbjct: 152 YPGQITGNMICVGFLEGGKDSCQGDSGGP----------VVCNGQLQGIVSWGYGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVNWI 216
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V + CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 126 SSGSSYPSL-LQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCN 184
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 185 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 216
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 88/241 (36%), Gaps = 78/241 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR---------------TPHCATNPEQISSVRLGEHDANS 255
I+GGY SIP+ + HC + Q VRLGEH+
Sbjct: 1 IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
D + Q I K+I+H +F+G + NDI L++L P LN
Sbjct: 56 --DVLEGNEQ------FINAAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP 106
Query: 307 ------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCVGG- 337
GT L+ C +D+ Y +CVG
Sbjct: 107 RSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ W
Sbjct: 167 EGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKVCNYVNW 215
Query: 398 I 398
I
Sbjct: 216 I 216
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 161 ICVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVNWIQQTIAA 222
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 490 APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
AP VQ+ ++ + ++H + D DIALL LEK E++ V P+ LP + + F
Sbjct: 72 APGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHV---FPAG 128
Query: 550 NTI-VAGWGVTE-DGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK-DACK 606
I V GWG T+ G +L L + +V N C+ + +CVG G D+C+
Sbjct: 129 KAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQ 188
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
GDSGGPL+ S ++ R + G+VS+G C +++ PGVYTR+ F WI ++
Sbjct: 189 GDSGGPLS---SVEAD--GRIFQAGVVSWGDGCAQRNK-PGVYTRLPLFRDWIKEN 238
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 56/203 (27%)
Query: 238 TNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALL 297
++P Q ++ LG HD + ++ AP VQ+ R+ ++ISH F+ + DIALL
Sbjct: 53 SDPTQWTAF-LGLHDQS---------QRSAPGVQERRLKRIISHPFFN-DFTFDYDIALL 101
Query: 298 RLERPPRL----------NGTHL--------MSCCYYLAYADNGISI------------- 326
LE+P + +H+ ++ + Y G I
Sbjct: 102 ELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTT 161
Query: 327 -------DYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS 378
MCVG + G DSC GDSGGPL+ R + G+VS G
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLS-----SVEADGRIFQAGVVSWGDG- 215
Query: 379 CGVYEIPGVYSRTSYFLRWILDH 401
C PGVY+R F WI ++
Sbjct: 216 CAQRNKPGVYTRLPLFRDWIKEN 238
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAI 128
+L L + +V N C+ + +CVG G DSC GDSGGPL+
Sbjct: 146 ALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLS-----SVEA 200
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
R + G+VS+G + C + PGVYTR+ F WI ++
Sbjct: 201 DGRIFQAGVVSWG-DGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 770 LCVGGKVGK-DSCNGDSGGPLMWMGSFDRSISA--RTYLLGIVSLGPSTCGMLRIPGVYT 826
+CVG G DSC GDSGGPL S+ A R + G+VS G C PGVYT
Sbjct: 175 MCVGFLSGGVDSCQGDSGGPL-------SSVEADGRIFQAGVVSWG-DGCAQRNKPGVYT 226
Query: 827 RTSYFLRWI 835
R F WI
Sbjct: 227 RLPLFRDWI 235
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 48 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V V LP A +++GWG T+ SS L ++ V + CK+
Sbjct: 96 LNSRVATVSLPRSCAAA----GTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + ICVG + GKD+C+GDSGGP ++ L G+VS+G C K+
Sbjct: 152 YPGQITGNMICVGFLEGGKDSCQGDSGGP----------VVCNGQLQGIVSWGYGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVNWI 216
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V + CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 126 SSGSSYPSL-LQCLKAPVLSDSSCKSAYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCN 184
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 185 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 216
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 88/241 (36%), Gaps = 78/241 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR---------------TPHCATNPEQISSVRLGEHDANS 255
I+GGY S+P+ + HC + Q VRLGEH+
Sbjct: 1 IVGGYTCAANSVPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
D + Q I K+I+H +F+G + NDI L++L P LN
Sbjct: 56 --DVLEGNEQ------FINAAKIITHPNFNGN-TLDNDIMLIKLSSPATLNSRVATVSLP 106
Query: 307 ------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCVGG- 337
GT L+ C +D+ Y +CVG
Sbjct: 107 RSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAYPGQITGNMICVGFL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ W
Sbjct: 167 EGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKVCNYVNW 215
Query: 398 I 398
I
Sbjct: 216 I 216
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 161 ICVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVNWIQQTIAA 222
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQ 573
NDIAL+RL+ + V P+CLP ++ + + +++GWG TE ++ L A +
Sbjct: 173 NDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARL 232
Query: 574 KVFNSEECKARYQELDPS---------SQICVGGKVGKDACKGDSGGPLTWMGSFDSAIL 624
V +CK E + + IC GG+ G D+CKGDSGG D
Sbjct: 233 PVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDK--- 289
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
+ Y GLVS+GP CGT G+YTR+ ++ WI+ +++
Sbjct: 290 TKFYAAGLVSWGPQCGTY----GLYTRVKNYVDWIMKTMQE 326
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 34/180 (18%)
Query: 660 LDHLEDEVNIPEVHYVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKKIPSHILLGVNQL 718
L L+D V + V P+CLP G YN +G +++GWG TEK+ + L
Sbjct: 177 LVRLKDPVKMGPT--VSPICLP-GTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLP 233
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGK 778
V C + + + Y+ T +C GG+ G
Sbjct: 234 VAPLRKCKEVKVEKPTAD----------AEAYVFTP-------------NMICAGGEKGM 270
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
DSC GDSGG D++ + Y G+VS GP CG G+YTR ++ WI+ T
Sbjct: 271 DSCKGDSGGAFAVQDPNDKT---KFYAAGLVSWGPQ-CGTY---GLYTRVKNYVDWIMKT 323
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCK-ARYQKLDPSSQ--------ICVGGKVGKDSCYGDS 114
TE + ++ L A + V KCK + +K ++ IC GG+ G DSC GDS
Sbjct: 218 TEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDS 277
Query: 115 GGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
GG D + Y GLVS+GP+ CG G+YTR+ ++ WI+ +++
Sbjct: 278 GGAFAVQ---DPNDKTKFYAAGLVSWGPQ-CGTY---GLYTRVKNYVDWIMKTMQE 326
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 94/270 (34%), Gaps = 79/270 (29%)
Query: 203 CGLASE-----QRIIGGYVAKLGSIPWIARIAYSRTPHCATNPEQISSVRLGEHDANSDP 257
CG+ E QRIIGG A + + PW + P V H +
Sbjct: 70 CGVPREPFEEKQRIIGGSDADIKNFPWQV---FFDNPWAGGALINEYWVLTAAHVVEGNR 126
Query: 258 DCSPDHRQCAPPVQDIRVVK--VISHEHF------------SGEPNMRNDIALLRLERPP 303
+ P + VQ R+ K +++ EH G N NDIAL+RL+ P
Sbjct: 127 E--PTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPV 184
Query: 304 RLNGTHLMSCC------YYLAYADNGI--------------------------------- 324
++ T C Y L D G+
Sbjct: 185 KMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVK 244
Query: 325 ---------SIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLG 375
+ + +C GG G DSC GDSGG D + Y GLVS G
Sbjct: 245 VEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQ---DPNDKTKFYAAGLVSWG 301
Query: 376 PASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
P CG Y G+Y+R ++ WI+ + ++
Sbjct: 302 P-QCGTY---GLYTRVKNYVDWIMKTMQEN 327
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 502 LTHENYT-DSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
HE YT D+G NDIAL++L N + P+CLP A + ++ +GWG+T+
Sbjct: 235 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 294
Query: 561 DGRSSLELLAVQQKVFNSEECKARYQELD------PSSQICVGGKV-GKDACKGDSGGPL 613
G + L+ V + + ++C A Y++ ++ +C G + GKD+C+GDSGG L
Sbjct: 295 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 354
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
++ S R ++ G+VS+G ++ GVYT++ ++ WI + + D
Sbjct: 355 VFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 402
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNGI 734
+ P+CLP + + +GWGLT++ + L+ V+ + D CTA YE+
Sbjct: 265 ITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEK--- 321
Query: 735 SIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKV-GKDSCNGDSGGPLMWMG 793
Y R ++ + LC G + GKDSC GDSGG L+
Sbjct: 322 -------------------PPYPRGSVTAN----MLCAGLESGGKDSCRGDSGGALV--- 355
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
F S + R ++ GIVS G CG GVYT+ ++ WI
Sbjct: 356 -FLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 396
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 73 LLAVQQKVFNSEKCKARYQKLD------PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFD 125
L+ V + + +KC A Y+K ++ +C G + G KDSC GDSGG L ++ S
Sbjct: 302 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS-- 359
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
+ R ++ G+VS+G +CG+ GVYT++ ++ WI + + D
Sbjct: 360 --ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 402
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 97/257 (37%), Gaps = 60/257 (23%)
Query: 203 CGLASEQ---RIIGGYVAKLGSIPWIARIAYSRTPHCATNPEQ-----ISSVRLGEHDAN 254
CGL++ +I GG AK G PW I T A + +V +HDA+
Sbjct: 151 CGLSARTTGGQIYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDAS 210
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP------------ 302
+ ++ +P V HE ++ + NDIAL++L
Sbjct: 211 ALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 270
Query: 303 PRLNGTHLMSC-----------------CYYLAYADNGISIDYN---------------- 329
PR M L Y D I +D+
Sbjct: 271 PRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPI-VDHQKCTAAYEKPPYPRGSV 329
Query: 330 -SGQMCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGV 387
+ +C G + GKDSC GDSGG L ++ S + R ++ G+VS G +CG GV
Sbjct: 330 TANMLCAGLESGGKDSCRGDSGGALVFLDS----ETERWFVGGIVSWGSMNCGEAGQYGV 385
Query: 388 YSRTSYFLRWILDHLDD 404
Y++ ++ WI + + D
Sbjct: 386 YTKVINYIPWIENIISD 402
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 502 LTHENYT-DSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
HE YT D+G NDIAL++L N + P+CLP A + ++ +GWG+T+
Sbjct: 74 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 133
Query: 561 DGRSSLELLAVQQKVFNSEECKARYQE------LDPSSQICVGGKV-GKDACKGDSGGPL 613
G + L+ V + + ++C A Y++ ++ +C G + GKD+C+GDSGG L
Sbjct: 134 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 193
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
++ S R ++ G+VS+G ++ GVYT++ ++ WI + + D
Sbjct: 194 VFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 241
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNGI 734
+ P+CLP + + +GWGLT++ + L+ V+ + D CTA YE+
Sbjct: 104 ITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEK--- 160
Query: 735 SIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKV-GKDSCNGDSGGPLMWMG 793
Y R ++ + LC G + GKDSC GDSGG L+
Sbjct: 161 -------------------PPYPRGSVTAN----MLCAGLESGGKDSCRGDSGGALV--- 194
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
F S + R ++ GIVS G CG GVYT+ ++ WI
Sbjct: 195 -FLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 73 LLAVQQKVFNSEKCKARYQK------LDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFD 125
L+ V + + +KC A Y+K ++ +C G + G KDSC GDSGG L ++ S
Sbjct: 141 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSE- 199
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
+ R ++ G+VS+G +CG+ GVYT++ ++ WI + + D
Sbjct: 200 ---TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 241
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 91/246 (36%), Gaps = 57/246 (23%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHCATNPEQ-----ISSVRLGEHDANSDPDCSPDHRQ 265
I GG AK G PW I T A + +V +HDA++ ++
Sbjct: 1 IYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKR 60
Query: 266 CAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP------------PRLNGTHLMSC 313
+P V HE ++ + NDIAL++L PR M
Sbjct: 61 LSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRT 120
Query: 314 -----------------CYYLAYADNGISIDYN-----------------SGQMCVG-GN 338
L Y D I +D+ + +C G +
Sbjct: 121 DDIGTASGWGLTQRGFLARNLMYVDIPI-VDHQKCTAAYEKPPYPRGSVTANMLCAGLES 179
Query: 339 VGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGG L ++ S + R ++ G+VS G +CG GVY++ ++ WI
Sbjct: 180 GGKDSCRGDSGGALVFLDSE----TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
Query: 399 LDHLDD 404
+ + D
Sbjct: 236 ENIISD 241
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 502 LTHENYT-DSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
HE YT D+G NDIAL++L N + P+CLP A + ++ +GWG+T+
Sbjct: 160 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 219
Query: 561 DGRSSLELLAVQQKVFNSEECKARYQELD------PSSQICVGGKV-GKDACKGDSGGPL 613
G + L+ V + + ++C A Y++ ++ +C G + GKD+C+GDSGG L
Sbjct: 220 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 279
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
++ S R ++ G+VS+G ++ GVYT++ ++ WI + + D
Sbjct: 280 VFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 327
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNGI 734
+ P+CLP + + +GWGLT++ + L+ V+ + D CTA YE+
Sbjct: 190 ITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEK--- 246
Query: 735 SIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKV-GKDSCNGDSGGPLMWMG 793
Y R ++ + LC G + GKDSC GDSGG L+
Sbjct: 247 -------------------PPYPRGSVTAN----MLCAGLESGGKDSCRGDSGGALV--- 280
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
F S + R ++ GIVS G CG GVYT+ ++ WI
Sbjct: 281 -FLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 321
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 73 LLAVQQKVFNSEKCKARYQKLD------PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFD 125
L+ V + + +KC A Y+K ++ +C G + G KDSC GDSGG L ++ S
Sbjct: 227 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSE- 285
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
+ R ++ G+VS+G +CG+ GVYT++ ++ WI + + D
Sbjct: 286 ---TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 327
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 60/257 (23%)
Query: 203 CGLASEQ---RIIGGYVAKLGSIPWIARIAYSRTPHCATNPEQ-----ISSVRLGEHDAN 254
CGL++ RI GG AK G PW I T A + +V +HDA+
Sbjct: 76 CGLSARTTGGRIYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDAS 135
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP------------ 302
+ ++ +P V HE ++ + NDIAL++L
Sbjct: 136 ALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 195
Query: 303 PRLNGTHLMSC-----------------CYYLAYADNGISIDY----------------- 328
PR M L Y D I +D+
Sbjct: 196 PRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPI-VDHQKCTAAYEKPPYPRGSV 254
Query: 329 NSGQMCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGV 387
+ +C G + GKDSC GDSGG L ++ S + R ++ G+VS G +CG GV
Sbjct: 255 TANMLCAGLESGGKDSCRGDSGGALVFLDSE----TERWFVGGIVSWGSMNCGEAGQYGV 310
Query: 388 YSRTSYFLRWILDHLDD 404
Y++ ++ WI + + D
Sbjct: 311 YTKVINYIPWIENIISD 327
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 12/172 (6%)
Query: 502 LTHENYT-DSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
HE YT D+G NDIAL++L N + P+CLP A + ++ +GWG+T+
Sbjct: 74 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 133
Query: 561 DGRSSLELLAVQQKVFNSEECKARYQE------LDPSSQICVGGKV-GKDACKGDSGGPL 613
G + L+ V + + ++C A Y++ ++ +C G + GKD+C+GD+GG L
Sbjct: 134 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGAL 193
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
++ S R ++ G+VS+G ++ GVYT++ ++ WI + + D
Sbjct: 194 VFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 241
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNGI 734
+ P+CLP + + +GWGLT++ + L+ V+ + D CTA YE+
Sbjct: 104 ITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEK--- 160
Query: 735 SIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKV-GKDSCNGDSGGPLMWMG 793
Y R ++ + LC G + GKDSC GD+GG L+
Sbjct: 161 -------------------PPYPRGSVTAN----MLCAGLESGGKDSCRGDAGGALV--- 194
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
F S + R ++ GIVS G CG GVYT+ ++ WI
Sbjct: 195 -FLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 11/105 (10%)
Query: 73 LLAVQQKVFNSEKCKARYQK------LDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFD 125
L+ V + + +KC A Y+K ++ +C G + G KDSC GD+GG L ++ S
Sbjct: 141 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSE- 199
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
+ R ++ G+VS+G +CG+ GVYT++ ++ WI + + D
Sbjct: 200 ---TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 241
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 91/246 (36%), Gaps = 57/246 (23%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHCATNPEQ-----ISSVRLGEHDANSDPDCSPDHRQ 265
I GG AK G PW I T A + +V +HDA++ ++
Sbjct: 1 IYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKR 60
Query: 266 CAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP------------PRLNGTHLMSC 313
+P V HE ++ + NDIAL++L PR M
Sbjct: 61 LSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRT 120
Query: 314 -----------------CYYLAYADNGISIDYN-----------------SGQMCVG-GN 338
L Y D I +D+ + +C G +
Sbjct: 121 DDIGTASGWGLTQRGFLARNLMYVDIPI-VDHQKCTAAYEKPPYPRGSVTANMLCAGLES 179
Query: 339 VGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GD+GG L ++ S + R ++ G+VS G +CG GVY++ ++ WI
Sbjct: 180 GGKDSCRGDAGGALVFLDSE----TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
Query: 399 LDHLDD 404
+ + D
Sbjct: 236 ENIISD 241
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+CLP + RN + V GWG
Sbjct: 463 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLP--SKGDRNVIYTDCWVTGWG 520
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 521 Y-RKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 579
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ + +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 580 SCKHN------EVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 623
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 539 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 592
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 593 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 623
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 75/190 (39%), Gaps = 56/190 (29%)
Query: 660 LDHLEDEVNIPEVHYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL 718
L LE VN + +P+CLP GD N D V GWG +K+
Sbjct: 483 LLKLETTVNYTDSQ--RPICLPSKGD---RNVIYTDCWVTGWGY--RKL----------- 524
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG- 777
R+ I K ++ LV + C Y + I+ +C G + G
Sbjct: 525 ------------RDKIQNTLQKAKIPLVTNEE-CQKRYRGHKIT----HKMICAGYREGG 567
Query: 778 KDSCNGDSGGPL------MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYF 831
KD+C GDSGGPL +W +L+GI S G C PGVYT +
Sbjct: 568 KDACKGDSGGPLSCKHNEVW------------HLVGITSWGEG-CAQRERPGVYTNVVEY 614
Query: 832 LRWILATPEA 841
+ WIL +A
Sbjct: 615 VDWILEKTQA 624
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 567 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 619
Query: 400 D 400
+
Sbjct: 620 E 620
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+CLP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ + +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 SCKHN------EVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 660 LDHLEDEVNIPEVHYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL 718
L LE VN + +P+CLP GD N D V GWG +K+
Sbjct: 96 LLKLETTVNYTDSQ--RPICLPSKGD---RNVIYTDCWVTGWGY--RKL----------- 137
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG- 777
R+ I K ++ LV + C Y + I+ +C G + G
Sbjct: 138 ------------RDKIQNTLQKAKIPLVTNEE-CQKRYRGHKIT----HKMICAGYREGG 180
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILA 837
KD+C GDSGGPL + +L+GI S G C PGVYT ++ WIL
Sbjct: 181 KDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILE 233
Query: 838 TPEA 841
+A
Sbjct: 234 KTQA 237
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 494 QDIKVIQF---LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
+D KV + H +Y G++ DIALL+L + ++ Y+ P+ LP NA N +
Sbjct: 66 EDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAANASFPN--GLH 123
Query: 551 TIVAGWGVTEDGRSSLELLAVQQ---KVFNSEECKARYQ-ELDPSS-------QICVG-G 598
V GWG S L +QQ + + E C A Y + P +C G
Sbjct: 124 CTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYV 183
Query: 599 KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQW 658
+ GKDAC+GDSGGPL+ + YL G+VS+G CG ++ PGVYT + + W
Sbjct: 184 EGGKDACQGDSGGPLS------CPVEGLWYLTGIVSWGDACGARN-RPGVYTLASSYASW 236
Query: 659 ILDHLEDEVNIP 670
I + + +P
Sbjct: 237 IQSKVTELQLVP 248
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 35/165 (21%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL---VYDRYLCTAIYE 730
Y++P+ LP + N G V GWG + + QL + R C A+Y
Sbjct: 105 YIRPISLPAANASFPN--GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALY- 161
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ID + V + +C E GKD+C GDSGGPL
Sbjct: 162 ----NIDAKPEEPHFVQEDMVCAGYVEG------------------GKDACQGDSGGPL- 198
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ YL GIVS G CG PGVYT S + WI
Sbjct: 199 -----SCPVEGLWYLTGIVSWG-DACGARNRPGVYTLASSYASWI 237
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 52/111 (46%), Gaps = 22/111 (19%)
Query: 69 PSLELLA---VQQ---KVFNSEKCKARYQ--------KLDPSSQICVG-GKVGKDSCYGD 113
PS+ LL +QQ + + E C A Y +C G + GKD+C GD
Sbjct: 134 PSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGD 193
Query: 114 SGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
SGGPL+ + YL G+VS+G + CG PGVYT + + WI
Sbjct: 194 SGGPLS------CPVEGLWYLTGIVSWG-DACGARNRPGVYTLASSYASWI 237
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + YL G+VS G A CG PGVY+ S + WI
Sbjct: 186 GKDACQGDSGGPLS------CPVEGLWYLTGIVSWGDA-CGARNRPGVYTLASSYASWIQ 238
Query: 400 DHLDD 404
+ +
Sbjct: 239 SKVTE 243
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 48 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
V V LP A +++GWG T+ SS L ++ V + CK+
Sbjct: 96 LXSRVATVSLPRSCAAA----GTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + ICVG + GKD+C+GDSGGP ++ L G+VS+G C K+
Sbjct: 152 YPGQITGNMICVGFLEGGKDSCQGDSGGP----------VVCNGQLQGIVSWGYGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVNWI 216
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V + CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 126 SSGSSYPSL-LQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCN 184
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 185 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 216
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 87/241 (36%), Gaps = 78/241 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR---------------TPHCATNPEQISSVRLGEHDANS 255
I+GGY SIP+ + HC + Q VRLGEH+
Sbjct: 1 IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
D + Q I K+I+H +F+G + NDI L++L P L
Sbjct: 56 --DVLEGNEQ------FINAAKIITHPNFNGN-TLDNDIMLIKLSSPATLXSRVATVSLP 106
Query: 307 ------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCVGG- 337
GT L+ C +D+ Y +CVG
Sbjct: 107 RSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ W
Sbjct: 167 EGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKVCNYVNW 215
Query: 398 I 398
I
Sbjct: 216 I 216
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 161 ICVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVNWIQQTIAA 222
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+CLP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ + +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 SCKHN------EVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 660 LDHLEDEVNIPEVHYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL 718
L LE VN + +P+CLP GD N D V GWG +K+
Sbjct: 96 LLKLETTVNYADSQ--RPICLPSKGD---RNVIYTDCWVTGWGY--RKL----------- 137
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG- 777
R+ I K ++ LV + C Y + I+ +C G + G
Sbjct: 138 ------------RDKIQNTLQKAKIPLVTNEE-CQKRYRGHKIT----HKMICAGYREGG 180
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILA 837
KD+C GDSGGPL + +L+GI S G C PGVYT ++ WIL
Sbjct: 181 KDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILE 233
Query: 838 TPEA 841
+A
Sbjct: 234 KTQA 237
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+CLP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ + +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 SCKHN------EVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 660 LDHLEDEVNIPEVHYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL 718
L LE VN + +P+CLP GD N D V GWG +K+
Sbjct: 96 LLKLETTVNYADSQ--RPICLPSKGD---RNVIYTDCWVTGWGY--RKL----------- 137
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG- 777
R+ I K ++ LV + C Y + I+ +C G + G
Sbjct: 138 ------------RDKIQNTLQKAKIPLVTNEE-CQKRYRGHKIT----HKMICAGYREGG 180
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILA 837
KD+C GDSGGPL + +L+GI S G C PGVYT ++ WIL
Sbjct: 181 KDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILE 233
Query: 838 TPEA 841
+A
Sbjct: 234 KTQA 237
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGXLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGXLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 82/241 (34%), Gaps = 78/241 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHDANS 255
I+GGY ++P+ + HC + Q VRLGE + N
Sbjct: 1 IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCXKSGIQ---VRLGEDNINV 57
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
Q I K I H ++ + NDI L++L+ LN
Sbjct: 58 VEG----------NEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP 106
Query: 307 ------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCVGG- 337
GT ++ C +D+ Y S C G
Sbjct: 107 TSCASAGTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGXL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ W
Sbjct: 167 EGGKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSW 215
Query: 398 I 398
I
Sbjct: 216 I 216
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 19/183 (10%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN-ENTI 552
Q +V Q + Y T +DIALLRL + +V P+CLP R ++
Sbjct: 69 QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSL 128
Query: 553 VAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQI-----CVGGKVG-KDAC 605
V+GWG + + G ++LEL+ + +++C + +++ S I C G G KD+C
Sbjct: 129 VSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSC 188
Query: 606 KGDSGGPLT--WMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
KGDSGGP + G++ YL G+VS+G C T GVYTR++ +++W+ +
Sbjct: 189 KGDSGGPHATHYRGTW--------YLTGIVSWGQGCATVGHF-GVYTRVSQYIEWLQKLM 239
Query: 664 EDE 666
E
Sbjct: 240 RSE 242
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKLDPSSQI-----CVGGKVG-KDSCYGDSGGPLTWMGS 123
+LEL+ + ++ C + +K+ S I C G G KDSC GDSGGP
Sbjct: 142 ALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGP------ 195
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
+ YL G+VS+G + C + GVYTR++ +++W+ + E
Sbjct: 196 HATHYRGTWYLTGIVSWG-QGCATVGHFGVYTRVSQYIEWLQKLMRSE 242
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 752 CTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVS 810
C + G S + + C G G KDSC GDSGGP YL GIVS
Sbjct: 158 CLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGP------HATHYRGTWYLTGIVS 211
Query: 811 LGPSTCGMLRIPGVYTRTSYFLRWI 835
G C + GVYTR S ++ W+
Sbjct: 212 WGQG-CATVGHFGVYTRVSQYIEWL 235
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 333 MCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + G KDSC GDSGGP + YL G+VS G C GVY+R
Sbjct: 176 FCAGYSDGSKDSCKGDSGGP------HATHYRGTWYLTGIVSWG-QGCATVGHFGVYTRV 228
Query: 392 SYFLRWI 398
S ++ W+
Sbjct: 229 SQYIEWL 235
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + ++ CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + ++ CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSTSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 400 DHLDDH 405
+ +
Sbjct: 218 QTIASN 223
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V V LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASVSLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCAGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 33 VMIIKIKT------RARSPFIPNIRFKSPIHLLALFSTEDKRPSLE----LLAVQQKVFN 82
+M+IK+K+ R S +P + L K L ++ + +
Sbjct: 85 IMLIKLKSAASLNSRVASVSLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILS 144
Query: 83 SEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
CK+ Y S+ C G + GKDSC GDSGGP+ G L G+VS+G
Sbjct: 145 DSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCAGK----------LQGIVSWG 194
Query: 142 PEDCGKTENPGVYTRMTYFLQWI 164
C + PGVYT++ ++ WI
Sbjct: 195 -SGCAQKNKPGVYTKVCNYVSWI 216
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCAGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCAGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 68 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 115
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 116 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 171
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 172 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 221
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 222 K-PGVYTKVCNYVSWI 236
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 155 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 206
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 207 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 236
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 189 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 237
Query: 837 AT 838
T
Sbjct: 238 QT 239
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 84/244 (34%), Gaps = 78/244 (31%)
Query: 208 EQRIIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHD 252
+ +I+GGY ++P+ + HC + Q VRLGE +
Sbjct: 18 DDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQ---VRLGEDN 74
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
N Q I K I H ++ + NDI L++L+ LN
Sbjct: 75 INVVEG----------NEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASI 123
Query: 307 ---------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCV 335
GT ++ C +D+ Y S C
Sbjct: 124 SLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCA 183
Query: 336 GG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYF 394
G GKDSC GDSGGP+ G L G+VS G + C PGVY++ +
Sbjct: 184 GYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNY 232
Query: 395 LRWI 398
+ WI
Sbjct: 233 VSWI 236
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+CLP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRAL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ + +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 SCKHN------EVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 73/184 (39%), Gaps = 44/184 (23%)
Query: 660 LDHLEDEVNIPEVHYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL 718
L LE VN + +P+CLP GD N D V GWG
Sbjct: 96 LLKLETTVNYADSQ--RPICLPSKGD---RNVIYTDCWVTGWGY---------------- 134
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG- 777
R L R+ I K ++ LV + C Y + I+ +C G + G
Sbjct: 135 ---RAL------RDKIQNTLQKAKIPLVTNEE-CQKRYRGHKIT----HKMICAGYREGG 180
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILA 837
KD+C GDSGGPL + +L+GI S G C PGVYT ++ WIL
Sbjct: 181 KDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILE 233
Query: 838 TPEA 841
+A
Sbjct: 234 KTQA 237
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 29 LVNENWVVSAAHCYKSRVE------VRLGEHNI------------KVTEGSEQFISSSRV 70
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L KS N YV PV LP A V+GWG T
Sbjct: 71 IRHPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALPSSCAPAGTM----CTVSGWGNTMS 126
Query: 562 GRSSL-ELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 127 STADKNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 185
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 186 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFNDWLTSTM 219
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST DK +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 125 MSSTADKN---KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 181
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 182 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 168 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLT 216
Query: 837 AT 838
+T
Sbjct: 217 ST 218
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 59/194 (30%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L + L
Sbjct: 48 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKSATL 96
Query: 306 NG----THLMSCCY------------------------------YLAYAD--NGISIDYN 329
N L S C L+Y+D N
Sbjct: 97 NTYVQPVALPSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMIT 156
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 205
Query: 389 SRTSYFLRWILDHL 402
++ F W+ +
Sbjct: 206 AKVCIFNDWLTSTM 219
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 62 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 109
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 110 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 165
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 166 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 215
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 216 K-PGVYTKVCNYVSWI 230
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 149 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 200
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 201 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 230
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 183 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 231
Query: 837 AT 838
T
Sbjct: 232 QT 233
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 84/244 (34%), Gaps = 78/244 (31%)
Query: 208 EQRIIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHD 252
+ +I+GGY ++P+ + HC + Q VRLGE +
Sbjct: 12 DDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQ---VRLGEDN 68
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
N Q I K I H ++ + NDI L++L+ LN
Sbjct: 69 IN----------VVEGNEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASI 117
Query: 307 ---------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCV 335
GT ++ C +D+ Y S C
Sbjct: 118 SLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCA 177
Query: 336 GG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYF 394
G GKDSC GDSGGP+ G L G+VS G + C PGVY++ +
Sbjct: 178 GYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNY 226
Query: 395 LRWI 398
+ WI
Sbjct: 227 VSWI 230
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 53 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 101 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 156
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 157 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 206
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 207 K-PGVYTKVCNYVSWI 221
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 140 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 191
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 192 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 221
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 174 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 222
Query: 837 AT 838
T
Sbjct: 223 QT 224
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 84/244 (34%), Gaps = 78/244 (31%)
Query: 208 EQRIIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHD 252
+ +I+GGY ++P+ + HC + Q VRLGE +
Sbjct: 3 DDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQ---VRLGEDN 59
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
N Q I K I H ++ + NDI L++L+ LN
Sbjct: 60 IN----------VVEGNEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASI 108
Query: 307 ---------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCV 335
GT ++ C +D+ Y S C
Sbjct: 109 SLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCA 168
Query: 336 GG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYF 394
G GKDSC GDSGGP+ G L G+VS G + C PGVY++ +
Sbjct: 169 GYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNY 217
Query: 395 LRWI 398
+ WI
Sbjct: 218 VSWI 221
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 54 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 101
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 102 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 157
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 158 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 207
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 208 K-PGVYTKVCNYVSWI 222
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 141 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 192
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 193 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 222
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 175 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 223
Query: 837 AT 838
T
Sbjct: 224 QT 225
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 84/244 (34%), Gaps = 78/244 (31%)
Query: 208 EQRIIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHD 252
+ +I+GGY ++P+ + HC + Q VRLGE +
Sbjct: 4 DDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQ---VRLGEDN 60
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
N Q I K I H ++ + NDI L++L+ LN
Sbjct: 61 IN----------VVEGNEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASI 109
Query: 307 ---------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCV 335
GT ++ C +D+ Y S C
Sbjct: 110 SLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCA 169
Query: 336 GG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYF 394
G GKDSC GDSGGP+ G L G+VS G + C PGVY++ +
Sbjct: 170 GYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNY 218
Query: 395 LRWI 398
+ WI
Sbjct: 219 VSWI 222
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + + Q I ++ + H +Y NDI L++L K
Sbjct: 48 VRLGEHNIAVNEGTE------------QFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKAR 584
N YV V LP A + +V+GWG S+ L + + +S C +
Sbjct: 96 LNSYVSTVALPSSCASS----GTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSA 151
Query: 585 YQELDPSSQICVG-GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP ++ L G+VS+G C ++
Sbjct: 152 YPGQITSNMFCAGFMEGGKDSCQGDSGGP----------VVCNGQLQGVVSWGYGCAQRN 201
Query: 644 ENPGVYTRMTYFLQWILDHLEDE 666
+ PGVYT++ + WI +
Sbjct: 202 K-PGVYTKVCNYRSWISSTMSSN 223
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 80 VFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLV 138
+ +S C + Y S+ C G + GKDSC GDSGGP+ G L G+V
Sbjct: 142 ILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPVVCNGQ----------LQGVV 191
Query: 139 SYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
S+G C + PGVYT++ + WI +
Sbjct: 192 SWG-YGCAQRNKPGVYTKVCNYRSWISSTMSSN 223
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 83/227 (36%), Gaps = 68/227 (29%)
Query: 217 AKLGSIPWIARIAYSRTPHCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVV 276
L S W+ A HC + Q VRLGEH+ + Q I V
Sbjct: 27 GSLISSTWVVSAA-----HCYKSRIQ---VRLGEHNIAVNEG----------TEQFIDSV 68
Query: 277 KVISHEHFSGEPNMRNDIALLRLERPPRLNG-----THLMSC------CYYLAYAD-NGI 324
KVI H ++ N+ NDI L++L +P LN SC C + + +G
Sbjct: 69 KVIMHPSYNSR-NLDNDIMLIKLSKPASLNSYVSTVALPSSCASSGTRCLVSGWGNLSGS 127
Query: 325 SIDY-------------------------NSGQMCVG-GNVGKDSCNGDSGGPLTWMGSF 358
S +Y S C G GKDSC GDSGGP+ G
Sbjct: 128 SSNYPDTLRCLDLPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPVVCNGQ- 186
Query: 359 DSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
L G+VS G C PGVY++ + WI + +
Sbjct: 187 ---------LQGVVSWGYG-CAQRNKPGVYTKVCNYRSWISSTMSSN 223
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVYT+ + WI
Sbjct: 169 GKDSCQGDSGGPVVCNGQ----------LQGVVSWGYG-CAQRNKPGVYTKVCNYRSWIS 217
Query: 837 AT 838
+T
Sbjct: 218 ST 219
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 29 LVNENWVVSAAHCYKSRVE------VRLGEHNI------------KVTEGSEQFISSSRV 70
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L K N YV PV LP A V+GWG T
Sbjct: 71 IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM----CTVSGWGNTMS 126
Query: 562 GRS-SLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ S +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 127 STADSDKLQCLNIPILSYSDCNDSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 185
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 186 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFSDWLTSTM 219
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST D S +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 125 MSSTAD---SDKLQCLNIPILSYSDCNDSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 181
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 182 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFSDWLTSTM 219
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 73/197 (37%), Gaps = 59/197 (29%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P L
Sbjct: 48 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATL 96
Query: 306 NG----THLMSCCY------------------------------YLAYADNGISID--YN 329
N L + C L+Y+D S
Sbjct: 97 NTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSDKLQCLNIPILSYSDCNDSYPGMIT 156
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 205
Query: 389 SRTSYFLRWILDHLDDH 405
++ F W+ + +
Sbjct: 206 AKVCIFSDWLTSTMASY 222
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 168 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFSDWLT 216
Query: 837 AT 838
+T
Sbjct: 217 ST 218
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 49 LVNENWVVSAAHCYKSRVE------VRLGEHNI------------KVTEGSEQFISSSRV 90
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L K N YV PV LP A V+GWG T
Sbjct: 91 IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM----CTVSGWGNTMS 146
Query: 562 GRS-SLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ S +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 147 STADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 205
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 206 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFNDWLTSTM 239
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST D +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 145 MSSTADSN---KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 201
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 202 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTM 239
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 73/197 (37%), Gaps = 59/197 (29%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P L
Sbjct: 68 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATL 116
Query: 306 NG----THLMSCCY------------------------------YLAYAD--NGISIDYN 329
N L + C L+Y+D N
Sbjct: 117 NTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMIT 176
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 177 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 225
Query: 389 SRTSYFLRWILDHLDDH 405
++ F W+ + +
Sbjct: 226 AKVCIFNDWLTSTMASY 242
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 188 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLT 236
Query: 837 AT 838
+T
Sbjct: 237 ST 238
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 29 LVNENWVVSAAHCYKSRVE------VRLGEHNI------------KVTEGSEQFISSSRV 70
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L K N YV PV LP A V+GWG T
Sbjct: 71 IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM----CTVSGWGNTMS 126
Query: 562 GRS-SLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ S +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 127 STADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 185
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 186 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFNDWLTSTM 219
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST D S +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 125 MSSTAD---SNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 181
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 182 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 73/197 (37%), Gaps = 59/197 (29%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P L
Sbjct: 48 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATL 96
Query: 306 NG----THLMSCCY------------------------------YLAYAD--NGISIDYN 329
N L + C L+Y+D N
Sbjct: 97 NTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMIT 156
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 205
Query: 389 SRTSYFLRWILDHLDDH 405
++ F W+ + +
Sbjct: 206 AKVCIFNDWLTSTMASY 222
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 168 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLT 216
Query: 837 AT 838
+T
Sbjct: 217 ST 218
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 29 LVNENWVVSAAHCYKSRVE------VRLGEHNI------------KVTEGSEQFISSSRV 70
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L K N YV PV LP A V+GWG T
Sbjct: 71 IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM----CTVSGWGNTMS 126
Query: 562 GRS-SLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ S +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 127 STADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 185
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 186 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFNDWLTSTM 219
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST D S +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 125 MSSTAD---SNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 181
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 182 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 72/194 (37%), Gaps = 59/194 (30%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P L
Sbjct: 48 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATL 96
Query: 306 NG----THLMSCCY------------------------------YLAYAD--NGISIDYN 329
N L + C L+Y+D N
Sbjct: 97 NTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMIT 156
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 205
Query: 389 SRTSYFLRWILDHL 402
++ F W+ +
Sbjct: 206 AKVCIFNDWLTSTM 219
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 168 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLT 216
Query: 837 AT 838
+T
Sbjct: 217 ST 218
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 68 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 115
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 116 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 171
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GD+GGP+ G L G+VS+G C K+
Sbjct: 172 YPGQITSNMFCAGYLEGGKDSCQGDAGGPVVCSGK----------LQGIVSWGSGCAQKN 221
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 222 K-PGVYTKVCNYVSWI 236
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GD+GGP+ G
Sbjct: 155 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDAGGPVVCSGK-------- 206
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 207 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 236
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GD+GGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 189 GKDSCQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 237
Query: 837 AT 838
T
Sbjct: 238 QT 239
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 84/244 (34%), Gaps = 78/244 (31%)
Query: 208 EQRIIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHD 252
+ +I+GGY ++P+ + HC + Q VRLGE +
Sbjct: 18 DDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQ---VRLGEDN 74
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
N Q I K I H ++ + NDI L++L+ LN
Sbjct: 75 INVVEG----------NEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASI 123
Query: 307 ---------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCV 335
GT ++ C +D+ Y S C
Sbjct: 124 SLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCA 183
Query: 336 GG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYF 394
G GKDSC GD+GGP+ G L G+VS G + C PGVY++ +
Sbjct: 184 GYLEGGKDSCQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNY 232
Query: 395 LRWI 398
+ WI
Sbjct: 233 VSWI 236
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 44 LVNENWVVSAAHCYKSRVE------VRLGEHNI------------KVTEGSEQFISSSRV 85
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L K N YV PV LP A V+GWG T
Sbjct: 86 IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTM----CTVSGWGNTMS 141
Query: 562 GRS-SLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ S +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 142 STADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 200
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 201 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFNDWLTSTM 234
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST D +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 140 MSSTADSN---KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 196
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 197 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTM 234
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 73/197 (37%), Gaps = 59/197 (29%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P L
Sbjct: 63 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATL 111
Query: 306 NG----THLMSCCY------------------------------YLAYAD--NGISIDYN 329
N L + C L+Y+D N
Sbjct: 112 NTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMIT 171
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 172 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 220
Query: 389 SRTSYFLRWILDHLDDH 405
++ F W+ + +
Sbjct: 221 AKVCIFNDWLTSTMASY 237
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 183 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLT 231
Query: 837 AT 838
+T
Sbjct: 232 ST 233
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNKRRKNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 25/192 (13%)
Query: 501 FLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
+ H +Y G++ DIALL+L + ++ Y+ P+ LP A N + V GWG
Sbjct: 76 IIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPN--GLHCTVTGWGHVA 133
Query: 561 DGRSSLELLAVQQ---KVFNSEECKARYQ-ELDPSS-------QICVG-GKVGKDACKGD 608
S L +QQ + + E C + Y + P +C G + GKDAC+GD
Sbjct: 134 PSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGD 193
Query: 609 SGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI---LDHLED 665
SGGPL+ + YL G+VS+G CG ++ PGVYT + + WI + L+
Sbjct: 194 SGGPLS------CPVEGLWYLTGIVSWGDACGARN-RPGVYTLASSYASWIQSKVTELQP 246
Query: 666 EVNIPEVHYVQP 677
V +P+ QP
Sbjct: 247 RV-VPQTQESQP 257
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 63/165 (38%), Gaps = 35/165 (21%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL---VYDRYLCTAIYE 730
Y++P+ LP N G V GWG + + QL + R C ++Y
Sbjct: 105 YIRPISLPAAQASFPN--GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLY- 161
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ID + V + +C E GKD+C GDSGGPL
Sbjct: 162 ----NIDAKPEEPHFVQEDMVCAGYVEG------------------GKDACQGDSGGPL- 198
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ YL GIVS G CG PGVYT S + WI
Sbjct: 199 -----SCPVEGLWYLTGIVSWG-DACGARNRPGVYTLASSYASWI 237
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + YL G+VS G A CG PGVY+ S + WI
Sbjct: 186 GKDACQGDSGGPLS------CPVEGLWYLTGIVSWGDA-CGARNRPGVYTLASSYASWIQ 238
Query: 400 DHLDDHFVRLGEQNVITDPD 419
+ + R+ Q + PD
Sbjct: 239 SKVTELQPRVVPQTQESQPD 258
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 99 ICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRM 157
+C G + GKD+C GDSGGPL+ + YL G+VS+G + CG PGVYT
Sbjct: 178 VCAGYVEGGKDACQGDSGGPLS------CPVEGLWYLTGIVSWG-DACGARNRPGVYTLA 230
Query: 158 TYFLQWI 164
+ + WI
Sbjct: 231 SSYASWI 237
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 25/192 (13%)
Query: 501 FLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
+ H +Y G++ DIALL+L + ++ Y+ P+ LP A N + V GWG
Sbjct: 76 IIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPN--GLHCTVTGWGHVA 133
Query: 561 DGRSSLELLAVQQ---KVFNSEECKARYQ-ELDPSS-------QICVG-GKVGKDACKGD 608
S L +QQ + + E C + Y + P +C G + GKDAC+GD
Sbjct: 134 PSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGD 193
Query: 609 SGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI---LDHLED 665
SGGPL+ + YL G+VS+G CG ++ PGVYT + + WI + L+
Sbjct: 194 SGGPLS------CPVEGLWYLTGIVSWGDACGARN-RPGVYTLASSYASWIQSKVTELQP 246
Query: 666 EVNIPEVHYVQP 677
V +P+ QP
Sbjct: 247 RV-VPQTQESQP 257
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 63/165 (38%), Gaps = 35/165 (21%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL---VYDRYLCTAIYE 730
Y++P+ LP N G V GWG + + QL + R C ++Y
Sbjct: 105 YIRPISLPAAQASFPN--GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLY- 161
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ID + V + +C E GKD+C GDSGGPL
Sbjct: 162 ----NIDAKPEEPHFVQEDMVCAGYVEG------------------GKDACQGDSGGPL- 198
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ YL GIVS G CG PGVYT S + WI
Sbjct: 199 -----SCPVEGLWYLTGIVSWG-DACGARNRPGVYTLASSYASWI 237
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + YL G+VS G A CG PGVY+ S + WI
Sbjct: 186 GKDACQGDSGGPLS------CPVEGLWYLTGIVSWGDA-CGARNRPGVYTLASSYASWIQ 238
Query: 400 DHLDDHFVRLGEQNVITDPD 419
+ + R+ Q + PD
Sbjct: 239 SKVTELQPRVVPQTQESQPD 258
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 99 ICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRM 157
+C G + GKD+C GDSGGPL+ + YL G+VS+G + CG PGVYT
Sbjct: 178 VCAGYVEGGKDACQGDSGGPLS------CPVEGLWYLTGIVSWG-DACGARNRPGVYTLA 230
Query: 158 TYFLQWI 164
+ + WI
Sbjct: 231 SSYASWI 237
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 15/191 (7%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
PP+Q+ V + + HE Y+ S NDIAL+++ ++ P CLP A +
Sbjct: 77 PPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVP-QT 135
Query: 551 TIVAGWGVTEDG--RSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVGGKVGK-DAC 605
VAGWG ++ R+S L + + + C + Y S+ +C G GK D C
Sbjct: 136 CWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTC 195
Query: 606 KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
+GDSGGPL S +++ + ++G+ S+G C +++ PGVYT +L WI
Sbjct: 196 QGDSGGPLMCKDSAENSYV----VVGITSWGVGCA-RAKRPGVYTSTWSYLNWI----AS 246
Query: 666 EVNIPEVHYVQ 676
++ VH +Q
Sbjct: 247 KIGSTAVHMIQ 257
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 52/204 (25%)
Query: 268 PPVQDIRVVKVISHEHFSGEPNMRNDIALLRL-------------------ERPPRLNGT 308
PP+Q+ V K+I HE +S NDIAL+++ PPR+ T
Sbjct: 77 PPLQERYVEKIIIHEKYSASSEA-NDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQT 135
Query: 309 HLMSCCYYLAYADNGIS----------ID---------YN----SGQMCVGGNVGK-DSC 344
++ +L S ID YN S +C G GK D+C
Sbjct: 136 CWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTC 195
Query: 345 NGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDD 404
GDSGGPL S +++ ++G+ S G C + PGVY+ T +L WI +
Sbjct: 196 QGDSGGPLMCKDSAENSY----VVVGITSWG-VGCARAKRPGVYTSTWSYLNWIASKIGS 250
Query: 405 ---HFVRLGEQNVITDPDCQNING 425
H ++L + + P Q +G
Sbjct: 251 TAVHMIQLPTASPASTPGAQASSG 274
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 748 DRYLCTAIYERNGISIDTNKGQLCVGGKVGK-DSCNGDSGGPLMWMGSFDRSISARTYLL 806
D LC + NG TN +C G GK D+C GDSGGPLM S + S ++
Sbjct: 164 DLGLCNSTRWYNGRIRSTN---VCAGYPEGKIDTCQGDSGGPLMCKDSAENSY----VVV 216
Query: 807 GIVSLGPSTCGMLRIPGVYTRTSYFLRWILA 837
GI S G C + PGVYT T +L WI +
Sbjct: 217 GITSWG-VGCARAKRPGVYTSTWSYLNWIAS 246
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 96 SSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
S+ +C G GK D+C GDSGGPL S +++ ++G+ S+G C + + PGVY
Sbjct: 180 STNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSY----VVVGITSWG-VGCARAKRPGVY 234
Query: 155 TRMTYFLQWILDHL 168
T +L WI +
Sbjct: 235 TSTWSYLNWIASKI 248
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ EV Q I + + H Y NDI L++L
Sbjct: 48 VRLGEHNI------------EVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAV 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKAR 584
N +V + LP T +++GWG T + EL + V + +C+A
Sbjct: 96 INAHVSTISLPTAPPAT----GTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ CVG + GKD+C+GD+GGP+ G L G+VS+G C K+
Sbjct: 152 YPGKITSNMFCVGFLEGGKDSCQGDAGGPVVCNGQ----------LQGVVSWGDGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+ PGVYT++ +++WI + +
Sbjct: 202 K-PGVYTKVYNYVKWIKNTI 220
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
EL + V + KC+A Y S+ CVG + GKDSC GD+GGP+ G
Sbjct: 134 ELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDAGGPVVCNGQ------- 186
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G + C + PGVYT++ +++WI + +
Sbjct: 187 ---LQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTI 220
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKDSC GD+GGP++ G L G+VS G C PGVYT+
Sbjct: 161 FCVGFLEGGKDSCQGDAGGPVVCNGQ----------LQGVVSWGDG-CAQKNKPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
+++WI T A
Sbjct: 210 YNYVKWIKNTIAA 222
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
S CVG GKDSC GD+GGP+ G L G+VS G C PGVY
Sbjct: 158 SNMFCVGFLEGGKDSCQGDAGGPVVCNGQ----------LQGVVSWGDG-CAQKNKPGVY 206
Query: 389 SRTSYFLRWILDHL 402
++ +++WI + +
Sbjct: 207 TKVYNYVKWIKNTI 220
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ EV Q I + + H Y NDI L++L
Sbjct: 48 VRLGEHNI------------EVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAV 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKAR 584
N V + LP T +++GWG T + EL + V + +C+A
Sbjct: 96 INARVSTISLPTAPPAT----GTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ CVG + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGVVSWGDGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+ PGVYT++ +++WI + +
Sbjct: 202 K-PGVYTKVYNYVKWIKNTI 220
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
EL + V + KC+A Y S+ CVG + GKDSC GDSGGP+ G
Sbjct: 134 ELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ------- 186
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G + C + PGVYT++ +++WI + +
Sbjct: 187 ---LQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTI 220
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKDSC GDSGGP++ G L G+VS G C PGVYT+
Sbjct: 161 FCVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGVVSWGDG-CAQKNKPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
+++WI T A
Sbjct: 210 YNYVKWIKNTIAA 222
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
S CVG GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 158 SNMFCVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGVVSWGDG-CAQKNKPGVY 206
Query: 389 SRTSYFLRWILDHL 402
++ +++WI + +
Sbjct: 207 TKVYNYVKWIKNTI 220
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 30/201 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ + Q I I V + + H +Y NDI LL+L ++ +
Sbjct: 53 VTLGAHNIKAKEETQQI------------IPVAKAIPHPDYNPDDRSNDIMLLKLVRNAK 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARY 585
V P+ LP NA + + VAGWG VT DG L V+ V + C++++
Sbjct: 101 RTRAVRPLNLPRRNAHVK--PGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF 158
Query: 586 Q-ELDPSSQICVG-GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Q + +++ICVG K+ + +GDSGGPL + + G+VSYG T G+
Sbjct: 159 QSSYNRANEICVGDSKIKGASFRGDSGGPL----------VCKRAAAGIVSYGQTDGSA- 207
Query: 644 ENPGVYTRMTYFLQWILDHLE 664
P V+TR+ F+ WI ++
Sbjct: 208 --PQVFTRVLSFVSWIKKTMK 226
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 73 LLAVQQKVFNSEKCKARYQK-LDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISA 130
L V+ V + C++++Q + +++ICVG K+ S GDSGGPL
Sbjct: 141 LHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFRGDSGGPLV----------C 190
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ G+VSYG D P V+TR+ F+ WI ++
Sbjct: 191 KRAAAGIVSYGQTD---GSAPQVFTRVLSFVSWIKKTMK 226
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 668 NIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTA 727
N V+P+ LP + + G + VAGWG ++ D
Sbjct: 98 NAKRTRAVRPLNLPRRNA--HVKPGDECYVAGWG---------------KVTPDGEFPKT 140
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSG 786
++E + + K Q+C E S ++CVG K+ S GDSG
Sbjct: 141 LHE---VKLTVQKDQVC------------ESQFQSSYNRANEICVGDSKIKGASFRGDSG 185
Query: 787 GPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GPL+ + GIVS G + P V+TR F+ WI T
Sbjct: 186 GPLV----------CKRAAAGIVSYGQTDGSA---PQVFTRVLSFVSWIKKT 224
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 328 YN-SGQMCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
YN + ++CVG + S GDSGGPL + G+VS G P
Sbjct: 162 YNRANEICVGDSKIKGASFRGDSGGPLV----------CKRAAAGIVSYGQTDGSA---P 208
Query: 386 GVYSRTSYFLRWI 398
V++R F+ WI
Sbjct: 209 QVFTRVLSFVSWI 221
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 29 LVNENWVVSAAHCYKTRVE------VRLGEHNI------------KVTEGSEQFISSSRV 70
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L K N YV PV LP A V+GWG T
Sbjct: 71 IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTM----CTVSGWGNTMS 126
Query: 562 GRSSL-ELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 127 STADKNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 185
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 186 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFNNWLTSTM 219
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST DK +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 125 MSSTADKN---KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 181
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 182 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFNNWLTSTM 219
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 59/197 (29%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P L
Sbjct: 48 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATL 96
Query: 306 NG----THLMSCCY------------------------------YLAYAD--NGISIDYN 329
N L S C L+Y+D N
Sbjct: 97 NTYVQPVALPSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMIT 156
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 205
Query: 389 SRTSYFLRWILDHLDDH 405
++ F W+ + +
Sbjct: 206 AKVCIFNNWLTSTMATY 222
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 168 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNNWLT 216
Query: 837 AT 838
+T
Sbjct: 217 ST 218
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G GK D+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAYGLEGKGDSCQGDSGGPVVCSGK----------LQGIVSWGSGCQAKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G GK DSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCQAKNKPGVYTKVCNYVSWI 216
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 770 LCVGGKVGK-DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
C G GK DSC GDSGGP++ G L GIVS G S C PGVYT+
Sbjct: 161 FCAYGLEGKGDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCQAKNKPGVYTKV 209
Query: 829 SYFLRWILAT 838
++ WI T
Sbjct: 210 CNYVSWIKQT 219
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 82/241 (34%), Gaps = 78/241 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHDANS 255
I+GGY ++P+ + HC + Q VRLGE + N
Sbjct: 1 IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQ---VRLGEDNINV 57
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
Q I K I H ++ + NDI L++L+ LN
Sbjct: 58 VEG----------NEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP 106
Query: 307 ------GTH------------------LMSCCYYLAYADNGISIDY----NSGQMCVGGN 338
GT ++ C +D+ Y S C G
Sbjct: 107 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAYGL 166
Query: 339 VGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GK DSC GDSGGP+ G L G+VS G + C PGVY++ ++ W
Sbjct: 167 EGKGDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCQAKNKPGVYTKVCNYVSW 215
Query: 398 I 398
I
Sbjct: 216 I 216
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNINV------VEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GD GGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDXGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GD GGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDXGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GD GGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDXGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GD GGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDXGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q I V + + H +Y D NDI LL+L + + V P+ LP A + V
Sbjct: 67 QVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVK--PGMMCSV 124
Query: 554 AGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGG 611
AGWG + + S+ +L V +V + E+C AR++ P +QIC G K++ GDSGG
Sbjct: 125 AGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGG 184
Query: 612 PLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
PL G G+VSYG GT P VYTR++ FL WI
Sbjct: 185 PLVCNGVAQ----------GIVSYGRNDGT---TPDVYTRISSFLSWI 219
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISA 130
+L V +V + EKC AR++ P +QIC G K+S GDSGGPL G
Sbjct: 139 KLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCNGVAQ----- 193
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG D G T P VYTR++ FL WI
Sbjct: 194 -----GIVSYGRND-GTT--PDVYTRISSFLSWI 219
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 769 QLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
Q+C G K+S +GDSGGPL+ G GIVS G + P VYTR
Sbjct: 165 QICAGDPSKRKNSFSGDSGGPLVCNGVAQ----------GIVSYGRNDG---TTPDVYTR 211
Query: 828 TSYFLRWILAT 838
S FL WI +T
Sbjct: 212 ISSFLSWIHST 222
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 332 QMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
Q+C G + K+S +GDSGGPL G G+VS G P VY+R
Sbjct: 165 QICAGDPSKRKNSFSGDSGGPLVCNGVAQ----------GIVSYGRNDG---TTPDVYTR 211
Query: 391 TSYFLRWI 398
S FL WI
Sbjct: 212 ISSFLSWI 219
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 442 LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQF 501
L +EN+ + R+E VRLGE N+ +V Q I +
Sbjct: 29 LVNENWVVSAAHCYKSRVE------VRLGEHNI------------KVTEGSEQFISSSRV 70
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ H NY+ NDI L++L K N YV PV LP A V+GWG T
Sbjct: 71 IRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTM----CTVSGWGNTMS 126
Query: 562 GRSSL-ELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSF 619
+ +L + + + +C Y + ++ C G + GKD+C+GDSGGP+ G
Sbjct: 127 STADKNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE- 185
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 186 ---------LQGVVSWGYGC-AEPGNPGVYAKVCIFNDWLTSTM 219
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 61 LFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
+ ST DK +L + + + C Y + ++ C G + GKDSC GDSGGP+
Sbjct: 125 MSSTADKN---KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV 181
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 182 CNGE----------LQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 59/197 (29%)
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P L
Sbjct: 48 VRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATL 96
Query: 306 NG----THLMSCCY------------------------------YLAYAD--NGISIDYN 329
N L S C L+Y+D N
Sbjct: 97 NTYVQPVALPSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMIT 156
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ C G GKDSC GDSGGP+ G L G+VS G C PGVY
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGVY 205
Query: 389 SRTSYFLRWILDHLDDH 405
++ F W+ + +
Sbjct: 206 AKVCIFNDWLTSTMATY 222
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 168 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLT 216
Query: 837 AT 838
+T
Sbjct: 217 ST 218
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 70 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 117
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N +V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 118 LNAHVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 173
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 174 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 222
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 223 DNPGVYTKVCNYVDWIQDTI 242
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTW 120
S+ P L L + + C+A Y + +CVG + GKDSC GDSGGP+
Sbjct: 147 LSSGVNEPDL-LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVC 205
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C +NPGVYT++ ++ WI D +
Sbjct: 206 NGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQDTI 242
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 93/245 (37%), Gaps = 72/245 (29%)
Query: 208 EQRIIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANS 255
+ +I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 20 DDKIVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV 79
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 80 ----------LEGNEQFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNAHVATVALP 128
Query: 307 ------GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG- 337
GT L+ C L AD S +CVG
Sbjct: 129 SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFL 188
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ W
Sbjct: 189 EGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDW 237
Query: 398 ILDHL 402
I D +
Sbjct: 238 IQDTI 242
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 183 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 231
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 232 CNYVDWIQDTIAA 244
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+ LP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP--SKGERNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ N +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 S---------CKHNEVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 770 LCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+C G + G KD+C GDSGGPL + +L+GI S G C PGVYT
Sbjct: 172 ICAGYREGGKDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNV 224
Query: 829 SYFLRWILATPEA 841
++ WIL +A
Sbjct: 225 VEYVDWILEKTQA 237
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+ LP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ N +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 S---------CKHNEVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 770 LCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+C G + G KD+C GDSGGPL + +L+GI S G C PGVYT
Sbjct: 172 ICAGYREGGKDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNV 224
Query: 829 SYFLRWILATPEA 841
++ WIL +A
Sbjct: 225 VEYVDWILEKTQA 237
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYDSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
+ V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LDSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+ LP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ N +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 S---------CKHNEVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 770 LCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+C G + G KD+C GDSGGPL + +L+GI S G C PGVYT
Sbjct: 172 ICAGYREGGKDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNV 224
Query: 829 SYFLRWILATPEA 841
++ WIL +A
Sbjct: 225 VEYVDWILEKTQA 237
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 29/209 (13%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
+R GE + +T+ + P Q+ K+ Q + H N+ ND+ALL L++
Sbjct: 193 IRAGEWDTLTEKE----------RLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLV 242
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG---RSSLELLAVQQKVFNSEECKA 583
+ +CLP ++ F++ +GWG E G R S L +Q + ++C+A
Sbjct: 243 QADNIGTICLP---QQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQA 299
Query: 584 RYQE--------LDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ LD + +C GG+ GKD C GD G PL D +R +G+V++
Sbjct: 300 DLRNTRLGLKFVLD-QTFVCAGGEQGKDTCTGDGGSPLF---CPDPRNPSRYMQMGIVAW 355
Query: 636 GPTCGTKSENPGVYTRMTYFLQWILDHLE 664
G CG ++ PGVY + +F WI ++
Sbjct: 356 GIGCGDENV-PGVYANVAHFRNWIDQEMQ 383
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 35/161 (21%)
Query: 678 VCLPYGDGLKYNFEGKDTIVAGWGLTE---KKIPSHILLGVNQLVYDRYLCTAIYERNGI 734
+CLP + F+ + +GWG E + S+IL + DR C A
Sbjct: 250 ICLPQQSQI---FDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNT-- 304
Query: 735 SIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGS 794
R G+ ++ +C GG+ GKD+C GD G PL
Sbjct: 305 -----------------------RLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLF---C 338
Query: 795 FDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D +R +GIV+ G CG +PGVY ++F WI
Sbjct: 339 PDPRNPSRYMQMGIVAWGIG-CGDENVPGVYANVAHFRNWI 378
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 51/176 (28%)
Query: 269 PVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP------------PRLNGTHLMSCCYY 316
P Q+ ++ +VI H +F+ + + ND+ALL L+RP P+ + + C+
Sbjct: 208 PYQERKIRQVIIHSNFNPK-TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFA 266
Query: 317 LAYADN----------------------------------GISIDYNSGQMCVGGNVGKD 342
+ G+ + +C GG GKD
Sbjct: 267 SGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKD 326
Query: 343 SCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
+C GD G PL D +R +G+V+ G CG +PGVY+ ++F WI
Sbjct: 327 TCTGDGGSPLF---CPDPRNPSRYMQMGIVAWG-IGCGDENVPGVYANVAHFRNWI 378
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 73 LLAVQQKVFNSEKCKA--RYQKLD-----PSSQICVGGKVGKDSCYGDSGGPLTWMGSFD 125
L +Q + +KC+A R +L + +C GG+ GKD+C GD G PL D
Sbjct: 284 LKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLF---CPD 340
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+R +G+V++G CG PGVY + +F WI ++
Sbjct: 341 PRNPSRYMQMGIVAWGI-GCGDENVPGVYANVAHFRNWIDQEMQ 383
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+ LP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ N +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 S---------CKHNEVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 770 LCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+C G + G KD+C GDSGGPL + +L+GI S G C PGVYT
Sbjct: 172 ICAGYREGGKDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNV 224
Query: 829 SYFLRWILATPEA 841
++ WIL +A
Sbjct: 225 VEYVDWILEKTQA 237
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LXSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 186
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 187 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+ LP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ N +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 S---------CKHNEVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 770 LCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+C G + G KD+C GDSGGPL + +L+GI S G C PGVYT
Sbjct: 172 ICAGYREGGKDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNV 224
Query: 829 SYFLRWILATPEA 841
++ WIL +A
Sbjct: 225 VEYVDWILEKTQA 237
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V + + H+ Y + + DIALL+LE + + P+ LP + RN + V GWG
Sbjct: 76 VQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLP--SKGDRNVIYTDCWVTGWG 133
Query: 558 VTEDGRSSLELLAVQQKV--FNSEECKARYQELDPSSQ-ICVGGKVG-KDACKGDSGGPL 613
+ R ++ + K+ +EEC+ RY+ + + IC G + G KDACKGDSGGPL
Sbjct: 134 YRKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL 192
Query: 614 TWMGSFDSAILARN---YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ N +L+G+ S+G C + E PGVYT + ++ WIL+ +
Sbjct: 193 S---------CKHNEVWHLVGITSWGEGCAQR-ERPGVYTNVVEYVDWILEKTQ 236
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQ-ICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ +E+C+ RY+ + + IC G + G KD+C GDSGGPL+ + +L+G+
Sbjct: 152 LVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLS------CKHNEVWHLVGI 205
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 206 TSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL+ + +L+G+ S G C E PGVY+ ++ WIL
Sbjct: 180 GKDACKGDSGGPLS------CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWIL 232
Query: 400 D 400
+
Sbjct: 233 E 233
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 770 LCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+C G + G KD+C GDSGGPL + +L+GI S G C PGVYT
Sbjct: 172 ICAGYREGGKDACKGDSGGPL------SCKHNEVWHLVGITSWGEG-CAQRERPGVYTNV 224
Query: 829 SYFLRWILATPEA 841
++ WIL +A
Sbjct: 225 VEYVDWILEKTQA 237
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 88/199 (44%), Gaps = 29/199 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ +V Q I + + H NY+ NDI L++L K
Sbjct: 48 VRLGEHNI------------KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE-LLAVQQKVFNSEECKARY 585
N YV PV LP A V+GWG T + + L + + + +C Y
Sbjct: 96 LNTYVQPVALPSSCAPAGTM----CTVSGWGNTMSSTADGDKLQCLNIPILSYSDCNNSY 151
Query: 586 QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSE 644
+ ++ C G + GKD+C+GDSGGP+ G L G+VS+G C +
Sbjct: 152 PGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWGYGC-AEPG 200
Query: 645 NPGVYTRMTYFLQWILDHL 663
NPGVY ++ F W+ +
Sbjct: 201 NPGVYAKVCIFNDWLTSTM 219
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
+L + + + C Y + ++ C G + GKDSC GDSGGP+ G
Sbjct: 133 KLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE------- 185
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 186 ---LQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 74/198 (37%), Gaps = 59/198 (29%)
Query: 245 SVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPR 304
+VRLGEH+ + Q I +VI H ++S N+ NDI L++L +P
Sbjct: 47 AVRLGEHNI----------KVTEGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPAT 95
Query: 305 LNG----THLMSCCY------------------------------YLAYAD--NGISIDY 328
LN L S C L+Y+D N
Sbjct: 96 LNTYVQPVALPSSCAPAGTMCTVSGWGNTMSSTADGDKLQCLNIPILSYSDCNNSYPGMI 155
Query: 329 NSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGV 387
+ C G GKDSC GDSGGP+ G L G+VS G C PGV
Sbjct: 156 TNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----------LQGVVSWG-YGCAEPGNPGV 204
Query: 388 YSRTSYFLRWILDHLDDH 405
Y++ F W+ + +
Sbjct: 205 YAKVCIFNDWLTSTMATY 222
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + F W+
Sbjct: 168 GKDSCQGDSGGPVVCNGE----------LQGVVSWGYG-CAEPGNPGVYAKVCIFNDWLT 216
Query: 837 AT 838
+T
Sbjct: 217 ST 218
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 58 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 105
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 106 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 161
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 162 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 210
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 211 DNPGVYTKVCNYVDWIQDTI 230
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 104 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 162
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 163 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 211
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 212 NPGVYTKVCNYVDWIQDTI 230
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 92/245 (37%), Gaps = 72/245 (29%)
Query: 208 EQRIIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANS 255
+ I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 8 DDAIVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV 67
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 68 ----------LEGNEQFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALP 116
Query: 307 ------GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG- 337
GT L+ C L AD S +CVG
Sbjct: 117 SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFL 176
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ W
Sbjct: 177 EGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDW 225
Query: 398 ILDHL 402
I D +
Sbjct: 226 IQDTI 230
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 171 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 219
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 220 CNYVDWIQDTIAA 232
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 56 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 103
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 104 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEAS 159
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 160 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 208
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 209 DNPGVYTKVCNYVDWIQDTI 228
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 102 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LKCLDAPLLPQADCEASY 160
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 161 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 209
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 210 NPGVYTKVCNYVDWIQDTI 228
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 89/240 (37%), Gaps = 72/240 (30%)
Query: 213 GGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPDCS 260
GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 11 GGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----- 65
Query: 261 PDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-------------- 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 66 -----LEGNEQFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 119
Query: 307 -GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVGKD 342
GT L+ C L AD S +CVG GKD
Sbjct: 120 AGTQCLISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKD 179
Query: 343 SCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
SC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D +
Sbjct: 180 SCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 169 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 217
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 218 CNYVDWIQDTIAA 230
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 56 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 103
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 104 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 159
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 160 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 208
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 209 DNPGVYTKVCNYVDWIQDTI 228
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 102 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 160
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 161 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 209
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 210 NPGVYTKVCNYVDWIQDTI 228
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 89/240 (37%), Gaps = 72/240 (30%)
Query: 213 GGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPDCS 260
GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 11 GGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----- 65
Query: 261 PDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-------------- 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 66 -----LEGNEQFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 119
Query: 307 -GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVGKD 342
GT L+ C L AD S +CVG GKD
Sbjct: 120 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKD 179
Query: 343 SCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
SC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D +
Sbjct: 180 SCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 169 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 217
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 218 CNYVDWIQDTIAA 230
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 19/183 (10%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN-ENTI 552
Q +V Q + Y T +DIALLRL + +V P+CLP R ++
Sbjct: 69 QSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSL 128
Query: 553 VAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQI-----CVGGKVG-KDAC 605
V+GWG + + G ++L L + +++C + +++ S I C G G KD+C
Sbjct: 129 VSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSC 188
Query: 606 KGDSGGPLT--WMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
KGDSGGP + G++ YL G+VS+G C T GVYTR++ +++W+ +
Sbjct: 189 KGDSGGPHATHYRGTW--------YLTGIVSWGQGCATVGHF-GVYTRVSQYIEWLQKLM 239
Query: 664 EDE 666
E
Sbjct: 240 RSE 242
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKLDPSSQI-----CVGGKVG-KDSCYGDSGGPLTWMGS 123
+L L + ++ C + +K+ S I C G G KDSC GDSGGP
Sbjct: 142 ALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGP------ 195
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
+ YL G+VS+G + C + GVYTR++ +++W+ + E
Sbjct: 196 HATHYRGTWYLTGIVSWG-QGCATVGHFGVYTRVSQYIEWLQKLMRSE 242
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 752 CTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVS 810
C + G S + + C G G KDSC GDSGGP YL GIVS
Sbjct: 158 CLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGP------HATHYRGTWYLTGIVS 211
Query: 811 LGPSTCGMLRIPGVYTRTSYFLRWI 835
G C + GVYTR S ++ W+
Sbjct: 212 WGQG-CATVGHFGVYTRVSQYIEWL 235
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 333 MCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + G KDSC GDSGGP + YL G+VS G C GVY+R
Sbjct: 176 FCAGYSDGSKDSCKGDSGGP------HATHYRGTWYLTGIVSWG-QGCATVGHFGVYTRV 228
Query: 392 SYFLRWI 398
S ++ W+
Sbjct: 229 SQYIEWL 235
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNG----THLMSCC 314
Q + K+I H +F + NDI L++L P +LN L S C
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-HKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 315 Y------YLAYADNGISIDYNS---------------------------GQMCVGG-NVG 340
++ N +S N +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNG----YVHPVCLPYGNAMTRNFENENTIV 553
V + + HENY +NDIAL+ ++K P C+P+ + + N+ IV
Sbjct: 394 VDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQ--PNDTCIV 451
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKARY-QELDPSSQICVGGKVGK-DACKGDSGG 611
+GWG +D L + K+ ++ C Y C G G DACKGDSGG
Sbjct: 452 SGWGREKDNERVFSLQWGEVKLISN--CSKFYGNRFYEKEMECAGTYDGSIDACKGDSGG 509
Query: 612 PLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
PL M + + Y+ G+VS+G CG K E PGVYT++ + WI H+
Sbjct: 510 PLVCMDANNVT-----YVWGVVSWGENCG-KPEFPGVYTKVANYFDWISYHV 555
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 114/288 (39%), Gaps = 70/288 (24%)
Query: 178 EDEVNIPEVHPEQHKNWHLLPPKDKCGLASE-----QRIIGGYVAKLGSIPWIARIAYSR 232
E E+ ++ E+ + LLP K CG+ + +RI+GG A+LG +PW I +
Sbjct: 285 ETEILTADMDAERRRIKSLLP-KLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDAS 343
Query: 233 TPHCATNPEQISSVRLGEHDANSDPDCSPDHR-QCAPPVQDI------RVV-----KVIS 280
C + H + S HR Q V D R+V ++I
Sbjct: 344 GITCGGIYIGGCWILTAAHCLRA----SKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIF 399
Query: 281 HEHFSGEPNMRNDIALLRLERPPRLNGTHLM----SCCYYLAY----------------A 320
HE+++ +NDIAL+ +++ L +C + Y
Sbjct: 400 HENYNA-GTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREK 458
Query: 321 DNGISIDYNSGQMCVGGNVGK---------------------DSCNGDSGGPLTWMGSFD 359
DN G++ + N K D+C GDSGGPL M + +
Sbjct: 459 DNERVFSLQWGEVKLISNCSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANN 518
Query: 360 SAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDHFV 407
TY+ G+VS G +CG E PGVY++ + + WI H+ F+
Sbjct: 519 V-----TYVWGVVSWGE-NCGKPEFPGVYTKVANYFDWISYHVGRPFI 560
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
D+C GDSGGPL M + + Y+ G+VS+G E+CGK E PGVYT++ + WI H
Sbjct: 501 DACKGDSGGPLVCMDANNVT-----YVWGVVSWG-ENCGKPEFPGVYTKVANYFDWISYH 554
Query: 168 L 168
+
Sbjct: 555 V 555
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 45/192 (23%)
Query: 645 NPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDT-IVAGWGLT 703
N G Y ++ D + + +P P C+P+ Y F+ DT IV+GWG
Sbjct: 404 NAGTYQNDIALIEMKKDGNKKDCELPRSI---PACVPWS---PYLFQPNDTCIVSGWGRE 457
Query: 704 EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISI 763
+ N+ V+ S+ + +L ++ YE+
Sbjct: 458 KD----------NERVF--------------SLQWGEVKLISNCSKFYGNRFYEKEMECA 493
Query: 764 DTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPG 823
T G + D+C GDSGGPL+ M + + TY+ G+VS G + CG PG
Sbjct: 494 GTYDGSI--------DACKGDSGGPLVCMDA-----NNVTYVWGVVSWGEN-CGKPEFPG 539
Query: 824 VYTRTSYFLRWI 835
VYT+ + + WI
Sbjct: 540 VYTKVANYFDWI 551
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + + G+E Q I ++ + H Y NDI L++L
Sbjct: 48 VRLGEHNI------KVLEGNE------QFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAV 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKAR 584
N V + LP +++GWG T + EL + V ECKA
Sbjct: 96 INARVSTISLPTAPPAA----GTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y +S CVG + GKD+C+ DSGGP+ G L G+VS+G C K+
Sbjct: 152 YPGKITNSMFCVGFLEGGKDSCQRDSGGPVVCNGQ----------LQGVVSWGHGCAWKN 201
Query: 644 ENPGVYTRMTYFLQWILDHL 663
PGVYT++ ++ WI D +
Sbjct: 202 R-PGVYTKVYNYVDWIKDTI 220
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
EL + V +CKA Y +S CVG + GKDSC DSGGP+ G
Sbjct: 134 ELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDSGGPVVCNGQ------- 186
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G C PGVYT++ ++ WI D +
Sbjct: 187 ---LQGVVSWG-HGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 88/245 (35%), Gaps = 78/245 (31%)
Query: 211 IIGGYVAKLGSIPW---------------IARIAYSRTPHCATNPEQISSVRLGEHDANS 255
I+GGY + S+P+ I+ HC Q VRLGEH+
Sbjct: 1 IVGGYTCEENSLPYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
+ Q I VK+I H ++ + + NDI L++L P +N
Sbjct: 56 --------KVLEGNEQFINAVKIIRHPKYNRD-TLDNDIMLIKLSSPAVINARVSTISLP 106
Query: 307 ------GTHLM------SCCYYLAYADNGISID----------------YNSGQMCVGG- 337
GT + + + Y D +D + CVG
Sbjct: 107 TAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC DSGGP+ G L G+VS G C PGVY++ ++ W
Sbjct: 167 EGGKDSCQRDSGGPVVCNGQ----------LQGVVSWGHG-CAWKNRPGVYTKVYNYVDW 215
Query: 398 ILDHL 402
I D +
Sbjct: 216 IKDTI 220
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKDSC DSGGP++ G L G+VS G C PGVYT+
Sbjct: 161 FCVGFLEGGKDSCQRDSGGPVVCNGQ----------LQGVVSWGHG-CAWKNRPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 YNYVDWIKDTIAA 222
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 29/201 (14%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLR 520
K P+ V LG+ N+ Q + V++ + H +Y + DI LLR
Sbjct: 43 KKPNLQVFLGKHNLRQRESSQ------------EQSSVVRAVIHPDYDAASHDQDIMLLR 90
Query: 521 LEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEE 580
L + + + + P LP + N + + GWG T DG + + + EE
Sbjct: 91 LARPAKLSELIQP--LPLERDCSAN--TTSCHILGWGKTADGDFPDTIQCAYIHLVSREE 146
Query: 581 CKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT- 638
C+ Y + +C G K GKD+C+GDSGGPL + ++L GLVS+G
Sbjct: 147 CEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL----------VCGDHLRGLVSWGNIP 196
Query: 639 CGTKSENPGVYTRMTYFLQWI 659
CG+K E PGVYT + + WI
Sbjct: 197 CGSK-EKPGVYTNVCRYTNWI 216
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 57 HLLALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSG 115
H+L T D + + + E+C+ Y + +C G K GKDSC GDSG
Sbjct: 118 HILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSG 177
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GPL ++L GLVS+G CG E PGVYT + + WI
Sbjct: 178 GPLV----------CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 766 NKGQLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGV 824
+ LC G K GKDSC GDSGGPL+ +L G+VS G CG PGV
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----------CGDHLRGLVSWGNIPCGSKEKPGV 205
Query: 825 YTRTSYFLRWILATPEA 841
YT + WI T +A
Sbjct: 206 YTNVCRYTNWIQKTIQA 222
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 75/211 (35%), Gaps = 65/211 (30%)
Query: 224 WIARIAYSRTPHCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEH 283
W+ A+ + P+ V LG+H+ RQ + VV+ + H
Sbjct: 35 WVLTAAHCKKPNL--------QVFLGKHNL----------RQRESSQEQSSVVRAVIHPD 76
Query: 284 FSGEPNMRNDIALLRLERPPRLN------------GTHLMSC------------------ 313
+ + DI LLRL RP +L+ + SC
Sbjct: 77 YDAASH-DQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQ 135
Query: 314 CYYLAYADNGISIDYNSGQ-----MCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTY 367
C Y+ GQ +C G GKDSC GDSGGPL +
Sbjct: 136 CAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLV----------CGDH 185
Query: 368 LIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
L GLVS G CG E PGVY+ + WI
Sbjct: 186 LRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 31/195 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSE 644
Y S+ C G + G D+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGQITSNMFCAGLE-GGDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAK--N 198
Query: 645 NPGVYTRMTYFLQWI 659
PGVYT++ ++ WI
Sbjct: 199 KPGVYTKVCNYVSWI 213
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN 132
L ++ + + CK+ Y S+ C G + G DSC GDSGGP+ G
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGLE-GGDSCQGDSGGPVVCSGK--------- 184
Query: 133 YLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C K + PGVYT++ ++ WI
Sbjct: 185 -LQGIVSWG-SGCAKNK-PGVYTKVCNYVSWI 213
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 774 GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLR 833
G G DSC GDSGGP++ G L GIVS G S C + PGVYT+ ++
Sbjct: 164 GLEGGDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAKNK-PGVYTKVCNYVS 211
Query: 834 WILAT 838
WI T
Sbjct: 212 WIKQT 216
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 332 QMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
M G G DSC GDSGGP+ G L G+VS G PGVY++
Sbjct: 159 NMFCAGLEGGDSCQGDSGGPVVCSGK----------LQGIVSWGSGC--AKNKPGVYTKV 206
Query: 392 SYFLRWI 398
++ WI
Sbjct: 207 CNYVSWI 213
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ + +CVG + GKDAC+GDSGGP+ G L G+VS+G C
Sbjct: 152 SSFIITDNMVCVGFLEGGKDACQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASS 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ + +CVG + GKD+C GDSGGP+ G L G+VS+G C +
Sbjct: 153 SFIITDNMVCVGFLEGGKDACQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 92/242 (38%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV--- 57
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F E NDI L++L P +LN
Sbjct: 58 -------LEGNEQFVNAAKIIKHPNFDRE-TYNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISIDY--NSGQMCVGG-NVG 340
GT L+ C L AD S + +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KD+C GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDACQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKD+C GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDACQGDSGGPVVCNGE----------LQGIVSWGYG-CALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI--VAG 555
V++ + H +Y + DI LLRL + + + + P+ + R+ + T + G
Sbjct: 68 VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL------PLERDCSAQTTSCHILG 121
Query: 556 WGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLT 614
WG T DG + + + EEC+ Y + +C G K GKD+C+GDSGGPL
Sbjct: 122 WGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL- 180
Query: 615 WMGSFDSAILARNYLIGLVSYGPT-CGTKSENPGVYTRMTYFLQWI 659
+ ++L GLVS+G CG+K E PGVYT + + WI
Sbjct: 181 ---------VCGDHLRGLVSWGNIPCGSK-EKPGVYTNVCRYTNWI 216
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 57 HLLALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSG 115
H+L T D + + + E+C+ Y + +C G K GKDSC GDSG
Sbjct: 118 HILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSG 177
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GPL ++L GLVS+G CG E PGVYT + + WI
Sbjct: 178 GPLV----------CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 766 NKGQLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGV 824
+ LC G K GKDSC GDSGGPL+ +L G+VS G CG PGV
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----------CGDHLRGLVSWGNIPCGSKEKPGV 205
Query: 825 YTRTSYFLRWILATPEA 841
YT + WI T +A
Sbjct: 206 YTNVCRYTNWIQKTIQA 222
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 58/160 (36%), Gaps = 47/160 (29%)
Query: 275 VVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------GTHLMSC--------- 313
VV+ + H + + DI LLRL RP +L+ SC
Sbjct: 68 VVRAVIHPDYDAASH-DQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHILGWGKTA 126
Query: 314 ---------CYYLAYADNGISIDYNSGQ-----MCVGG-NVGKDSCNGDSGGPLTWMGSF 358
C Y+ GQ +C G GKDSC GDSGGPL
Sbjct: 127 DGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLV----- 181
Query: 359 DSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
+L GLVS G CG E PGVY+ + WI
Sbjct: 182 -----CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 216
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV--- 57
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNG----THLMSCC 314
Q + K+I H +F E NDI L++L P +LN L S C
Sbjct: 58 -------LEGNEQFVNAAKIIKHPNFDRE-TYNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 315 Y------YLAYADNGISIDYNS---------------------------GQMCVGG-NVG 340
++ N +S N +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI--VAG 555
V++ + H +Y + DI LLRL + + + + P+ + R+ + T + G
Sbjct: 69 VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL------PLERDCSAQTTSCHILG 122
Query: 556 WGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLT 614
WG T DG + + + EEC+ Y + +C G K GKD+C+GDSGGPL
Sbjct: 123 WGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL- 181
Query: 615 WMGSFDSAILARNYLIGLVSYGPT-CGTKSENPGVYTRMTYFLQWI 659
+ ++L GLVS+G CG+K E PGVYT + + WI
Sbjct: 182 ---------VCGDHLRGLVSWGNIPCGSK-EKPGVYTNVCRYTNWI 217
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 57 HLLALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSG 115
H+L T D + + + E+C+ Y + +C G K GKDSC GDSG
Sbjct: 119 HILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSG 178
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GPL ++L GLVS+G CG E PGVYT + + WI
Sbjct: 179 GPLV----------CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 217
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 766 NKGQLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGV 824
+ LC G K GKDSC GDSGGPL+ +L G+VS G CG PGV
Sbjct: 157 TQNMLCAGDEKYGKDSCQGDSGGPLV----------CGDHLRGLVSWGNIPCGSKEKPGV 206
Query: 825 YTRTSYFLRWILATPEA 841
YT + WI T +A
Sbjct: 207 YTNVCRYTNWIQKTIQA 223
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 58/160 (36%), Gaps = 47/160 (29%)
Query: 275 VVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------GTHLMSC--------- 313
VV+ + H + + DI LLRL RP +L+ SC
Sbjct: 69 VVRAVIHPDYDAASH-DQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHILGWGKTA 127
Query: 314 ---------CYYLAYADNGISIDYNSGQ-----MCVGG-NVGKDSCNGDSGGPLTWMGSF 358
C Y+ GQ +C G GKDSC GDSGGPL
Sbjct: 128 DGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLV----- 182
Query: 359 DSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
+L GLVS G CG E PGVY+ + WI
Sbjct: 183 -----CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 217
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 58 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 105
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 106 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 161
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GD+GGP+ G L G+VS+G C
Sbjct: 162 YPGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE----------LQGIVSWGYGCALP- 210
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 211 DNPGVYTKVCNYVDWIQDTI 230
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 104 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 162
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GD+GGP+ G L G+VS+G C +
Sbjct: 163 PGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE----------LQGIVSWG-YGCALPD 211
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 212 NPGVYTKVCNYVDWIQDTI 230
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 72/245 (29%)
Query: 208 EQRIIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANS 255
+ +I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 8 DDKIVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV 67
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 68 ----------LEGNEQFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALP 116
Query: 307 ------GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG- 337
GT L+ C L AD S +CVG
Sbjct: 117 SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFL 176
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GD+GGP+ G L G+VS G C + + PGVY++ ++ W
Sbjct: 177 EGGKDSCQGDAGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDW 225
Query: 398 ILDHL 402
I D +
Sbjct: 226 IQDTI 230
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GD+GGP++ G L GIVS G C + PGVYT+
Sbjct: 171 VCVGFLEGGKDSCQGDAGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 219
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 220 CNYVDWIQDTIAA 232
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 493 VQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPV-----CLPYGNAMTRNFE 547
Q IK + H Y+ ND+ L++L + V V C P G T
Sbjct: 61 AQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCT---- 116
Query: 548 NENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDA 604
V+GWG T + +L+ V K+ + ++C Y++L +S +C G K+A
Sbjct: 117 -----VSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNA 171
Query: 605 CKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
C GDSGGPL + R L GLVS+G + +PGVYT++ F +WI D ++
Sbjct: 172 CNGDSGGPL----------VCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 21/148 (14%)
Query: 33 VMIIKIKTRAR-SPFIPNIRFKS---------PIHLLALFSTEDKRPSLELLAVQQKVFN 82
+M++K+ ++AR S + +R S + ++ D +L+ V K+ +
Sbjct: 84 LMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLIS 143
Query: 83 SEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
+ C Y+ L +S +C G K++C GDSGGPL R L GLVS+G
Sbjct: 144 PQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLV----------CRGTLQGLVSWG 193
Query: 142 PEDCGKTENPGVYTRMTYFLQWILDHLE 169
CG+ +PGVYT++ F +WI D ++
Sbjct: 194 TFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 52/195 (26%)
Query: 644 ENPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLT 703
+PG Y+ T+ +L L + + + V+ V LP + G V+GWG T
Sbjct: 71 RHPG-YSTQTHVNDLMLVKLNSQARLSSM--VKKVRLPS----RCEPPGTTCTVSGWGTT 123
Query: 704 ---EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNG 760
+ PS L+ V+ + CT +Y+ L+ + LC I +
Sbjct: 124 TSPDVTFPSD-LMCVDVKLISPQDCTKVYKD-------------LLENSMLCAGIPDSK- 168
Query: 761 ISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLR 820
K++CNGDSGGPL+ G+ L G+VS G CG
Sbjct: 169 -----------------KNACNGDSGGPLVCRGT----------LQGLVSWGTFPCGQPN 201
Query: 821 IPGVYTRTSYFLRWI 835
PGVYT+ F +WI
Sbjct: 202 DPGVYTQVCKFTKWI 216
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 60/236 (25%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHCA---TNPEQI---SSVRLGEHDANSDPDCSPDHR 264
II G GS PW + HC N + + ++ E+ + D D R
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRR 60
Query: 265 QCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNG----THLMSCCYY---- 316
Q I+ K H +S + ++ ND+ L++L RL+ L S C
Sbjct: 61 -----AQRIKASKSFRHPGYSTQTHV-NDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTT 114
Query: 317 -------------LAYADNGISIDYN----------------SGQMCVG-GNVGKDSCNG 346
+ + + + +D + +C G + K++CNG
Sbjct: 115 CTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNG 174
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
DSGGPL G+ L GLVS G CG PGVY++ F +WI D +
Sbjct: 175 DSGGPLVCRGT----------LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTW 120
S+ P L L + + C+A Y + +CVG + GKDSC GDSGGP+
Sbjct: 125 LSSGVNHPDL-LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVC 183
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C +NPGVYT++ ++ WI D +
Sbjct: 184 NGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 493 VQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPV-----CLPYGNAMTRNFE 547
Q IK + H Y+ ND+ L++L + V V C P G T
Sbjct: 61 AQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCT---- 116
Query: 548 NENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDA 604
V+GWG T + +L+ V K+ + ++C Y++L +S +C G K+A
Sbjct: 117 -----VSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNA 171
Query: 605 CKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
C GDSGGPL + R L GLVS+G + +PGVYT++ F +WI D ++
Sbjct: 172 CNGDSGGPL----------VCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 21/148 (14%)
Query: 33 VMIIKIKTRAR-SPFIPNIRFKS---------PIHLLALFSTEDKRPSLELLAVQQKVFN 82
+M++K+ ++AR S + +R S + ++ D +L+ V K+ +
Sbjct: 84 LMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLIS 143
Query: 83 SEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
+ C Y+ L +S +C G K++C GDSGGPL R L GLVS+G
Sbjct: 144 PQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLV----------CRGTLQGLVSWG 193
Query: 142 PEDCGKTENPGVYTRMTYFLQWILDHLE 169
CG+ +PGVYT++ F +WI D ++
Sbjct: 194 TFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 90/239 (37%), Gaps = 60/239 (25%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHCA---TNPEQI---SSVRLGEHDANSDPDCSPDHR 264
II G GS PW + HC N + + ++ E+ + D D R
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRR 60
Query: 265 QCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNG----THLMSCCYY---- 316
Q I+ K H +S + ++ ND+ L++L RL+ L S C
Sbjct: 61 -----AQRIKASKSFRHPGYSTQTHV-NDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTT 114
Query: 317 -------------LAYADNGISIDYN----------------SGQMCVG-GNVGKDSCNG 346
+ + + + +D + +C G + K++CNG
Sbjct: 115 CTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNG 174
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
DSGGPL G+ L GLVS G CG PGVY++ F +WI D + H
Sbjct: 175 DSGGPLVCRGT----------LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKH 223
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 52/195 (26%)
Query: 644 ENPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLT 703
+PG Y+ T+ +L L + + + V+ V LP + G V+GWG T
Sbjct: 71 RHPG-YSTQTHVNDLMLVKLNSQARLSSM--VKKVRLPS----RCEPPGTTCTVSGWGTT 123
Query: 704 ---EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNG 760
+ PS L+ V+ + CT +Y+ L+ + LC I +
Sbjct: 124 TSPDVTFPSD-LMCVDVKLISPQDCTKVYKD-------------LLENSMLCAGIPDSK- 168
Query: 761 ISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLR 820
K++CNGDSGGPL+ G+ L G+VS G CG
Sbjct: 169 -----------------KNACNGDSGGPLVCRGT----------LQGLVSWGTFPCGQPN 201
Query: 821 IPGVYTRTSYFLRWI 835
PGVYT+ F +WI
Sbjct: 202 DPGVYTQVCKFTKWI 216
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 494 QDIKVIQFLTHENYTDSGTK--NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q VI+ + H NY + K +DIALL L++ N YV P+C+ + +
Sbjct: 66 QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 552 IVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDS 609
V+GWG V GRS+L L ++ + + C + ++ C G + G+D+C+GDS
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDS 185
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGP + + ++L G++S+G C K + G+YT+++ ++ WI
Sbjct: 186 GGPHV------TEVEGTSFLTGIISWGEECAMKGKY-GIYTKVSRYVNWI 228
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 37/162 (22%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
YV P+C+ + + V+GWG K S ++L +YL + +R
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVL--------QYLRVPLVDRAT 155
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMG 793
T +Y+ C +E G+DSC GDSGGP +
Sbjct: 156 CLRSTK----FTIYNNMFCAGFHEG------------------GRDSCQGDSGGPHV--- 190
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ ++L GI+S G C M G+YT+ S ++ WI
Sbjct: 191 ---TEVEGTSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWI 228
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 89/248 (35%), Gaps = 80/248 (32%)
Query: 211 IIGGYVAKLGSIPW----------------IARIAYSRTPHCATNPEQISSVRLGEHDAN 254
++GG AK G PW + HC +I+ V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV-AGEHNIE 59
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN-DIALLRLERPPRLNGTHLMSC 313
+H + Q V+++I H +++ N N DIALL L+ P LN C
Sbjct: 60 E-----TEHTE-----QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPIC 109
Query: 314 CYYLAYADNGISIDYNSGQMCVGGNV---------------------------------- 339
Y + I + + SG + G V
Sbjct: 110 IADKEYTN--IFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNN 167
Query: 340 ---------GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
G+DSC GDSGGP + + ++L G++S G C + G+Y++
Sbjct: 168 MFCAGFHEGGRDSCQGDSGGPHV------TEVEGTSFLTGIISWGE-ECAMKGKYGIYTK 220
Query: 391 TSYFLRWI 398
S ++ WI
Sbjct: 221 VSRYVNWI 228
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDS 126
R +L L ++ + + C + ++ C G + G+DSC GDSGGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHV------T 191
Query: 127 AISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++L G++S+G E+C G+YT+++ ++ WI
Sbjct: 192 EVEGTSFLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKN---DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN 548
P Q+I+V Q + H Y +S ++ DI L+RL+ S V PV L A
Sbjct: 62 PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL----ANLCPKVG 117
Query: 549 ENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACK 606
+ I++GWG + + L + K+++ +C+ Y +C G G D C+
Sbjct: 118 QKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQ 177
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
GDSGGPL G L G+ S+G K E PGVYT++ + WI ++
Sbjct: 178 GDSGGPLVCDG----------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD 225
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 37 KIKTRARSPFIPNIRFKSPIHLLALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPS 96
K+K + P + K I ++ + L + K+++ KC+ Y
Sbjct: 103 KVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITE 162
Query: 97 SQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTR 156
+C G G D+C GDSGGPL G L G+ S+G + CGK E PGVYT+
Sbjct: 163 GMVCAGSSNGADTCQGDSGGPLVCDG----------MLQGITSWGSDPCGKPEKPGVYTK 212
Query: 157 MTYFLQWILDHLE 169
+ + WI ++
Sbjct: 213 ICRYTTWIKKTMD 225
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 79/208 (37%), Gaps = 62/208 (29%)
Query: 235 HCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHF--SGEPNMRN 292
HC +Q SVRLG+H S P Q+I+V + I H + S + +
Sbjct: 41 HCK---KQKYSVRLGDHSLQSRDQ----------PEQEIQVAQSIQHPCYNNSNPEDHSH 87
Query: 293 DIALLRLERP---------------------------------PRLNGTHLMSCCYYLAY 319
DI L+RL+ P+ N + ++C Y
Sbjct: 88 DIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIY 147
Query: 320 ADNGISIDY----NSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLG 375
+ N Y G +C G + G D+C GDSGGPL G L G+ S G
Sbjct: 148 SQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPLVCDG----------MLQGITSWG 197
Query: 376 PASCGVYEIPGVYSRTSYFLRWILDHLD 403
CG E PGVY++ + WI +D
Sbjct: 198 SDPCGKPEKPGVYTKICRYTTWIKKTMD 225
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 767 KGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
+G +C G G D+C GDSGGPL+ G L GI S G CG PGVYT
Sbjct: 162 EGMVCAGSSNGADTCQGDSGGPLVCDG----------MLQGITSWGSDPCGKPEKPGVYT 211
Query: 827 RTSYFLRWILAT 838
+ + WI T
Sbjct: 212 KICRYTTWIKKT 223
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GD+GGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GD+GGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GD+GGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDAGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GD+GGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDAGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 29/199 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE ++ + + Q I + H NY+ NDI L++L K
Sbjct: 48 VRLGEHHIRVNEGTE------------QYISSSSVIRHPNYSSYNINNDIMLIKLTKPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE-LLAVQQKVFNSEECKARY 585
N YVH V LP A V+GWG T + + L + + + +C Y
Sbjct: 96 LNQYVHAVALPTECAADATM----CTVSGWGNTMSSVADGDKLQCLSLPILSHADCANSY 151
Query: 586 QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSE 644
+ S C G + GKD+C+GDSGGP ++ L G+VS+G C + +
Sbjct: 152 PGMITQSMFCAGYLEGGKDSCQGDSGGP----------VVCNGVLQGVVSWGYGCAER-D 200
Query: 645 NPGVYTRMTYFLQWILDHL 663
+PGVY ++ W+ D +
Sbjct: 201 HPGVYAKVCVLSGWVRDTM 219
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
+L + + + C Y + S C G + GKDSC GDSGGP+ G
Sbjct: 133 KLQCLSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVVCNG-------- 184
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G C + ++PGVY ++ W+ D +
Sbjct: 185 --VLQGVVSWG-YGCAERDHPGVYAKVCVLSGWVRDTM 219
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKDSC GDSGGP+ G L G+VS G C + PGVY++ W+
Sbjct: 168 GKDSCQGDSGGPVVCNG----------VLQGVVSWGYG-CAERDHPGVYAKVCVLSGWVR 216
Query: 400 DHL 402
D +
Sbjct: 217 DTM 219
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L G+VS G C PGVY + W+
Sbjct: 168 GKDSCQGDSGGPVVCNG----------VLQGVVSWGYG-CAERDHPGVYAKVCVLSGWVR 216
Query: 837 AT 838
T
Sbjct: 217 DT 218
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VR+G++N + G E V +++V+ + H +T DIA+LRL+
Sbjct: 52 VRVGDRNTAAE------EGGEA----VHEVEVV--IKHNRFTKETYDFDIAVLRLKTPIT 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVFNSEECKAR 584
+ V P CLP + + T IV+G+G T E GR S L ++ + CK
Sbjct: 100 FRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS 159
Query: 585 YQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ + C G + DAC+GDSGGP + ++ G+VS+G C K
Sbjct: 160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEGCARKG 213
Query: 644 ENPGVYTRMTYFLQWI 659
+ G+YT++T FL+WI
Sbjct: 214 KY-GIYTKVTAFLKWI 228
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 88/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
++ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 AAE--------EGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ + Q I I V + + H +Y NDI LL+L ++ +
Sbjct: 53 VTLGAHNIKAKEETQQI------------IPVAKAIPHPDYNPDDRSNDIMLLKLVRNAK 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARY 585
V P+ LP NA + + VAGWG VT DG L V+ V + C++++
Sbjct: 101 RTRAVRPLNLPRRNAHVK--PGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF 158
Query: 586 Q-ELDPSSQICVG-GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Q + +++ICVG K+ + + DSGGPL + + G+VSYG T G+
Sbjct: 159 QSSYNRANEICVGDSKIKGASFEEDSGGPL----------VCKRAAAGIVSYGQTDGSA- 207
Query: 644 ENPGVYTRMTYFLQWI 659
P V+TR+ F+ WI
Sbjct: 208 --PQVFTRVLSFVSWI 221
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 73 LLAVQQKVFNSEKCKARYQK-LDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISA 130
L V+ V + C++++Q + +++ICVG K+ S DSGGPL
Sbjct: 141 LHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDSGGPLV----------C 190
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ G+VSYG D P V+TR+ F+ WI
Sbjct: 191 KRAAAGIVSYGQTD---GSAPQVFTRVLSFVSWI 221
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 62/172 (36%), Gaps = 46/172 (26%)
Query: 668 NIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTA 727
N V+P+ LP + + G + VAGWG ++ D
Sbjct: 98 NAKRTRAVRPLNLPRRNA--HVKPGDECYVAGWG---------------KVTPDGEFPKT 140
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSG 786
++E + + K Q+C E S ++CVG K+ S DSG
Sbjct: 141 LHE---VKLTVQKDQVC------------ESQFQSSYNRANEICVGDSKIKGASFEEDSG 185
Query: 787 GPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GPL+ + GIVS G + P V+TR F+ WI T
Sbjct: 186 GPLV----------CKRAAAGIVSYGQTDGSA---PQVFTRVLSFVSWIKKT 224
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V + LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATIALPSSCAPA----GTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTW 120
S+ P L L + + C+A Y + +CVG + GKDSC GDSGGP+
Sbjct: 125 LSSGVNHPDL-LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVC 183
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G L G+VS+G C +NPGVYT++ ++ WI D +
Sbjct: 184 NGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQDTI 220
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATIALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VR+G++N E V +++V+ + H +T DIA+LRL+
Sbjct: 52 VRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAVLRLKTPIT 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVFNSEECKAR 584
+ V P CLP + + T IV+G+G T E GR S L ++ + CK
Sbjct: 100 FRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS 159
Query: 585 YQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ + C G + DAC+GDSGGP + ++ G+VS+G C K
Sbjct: 160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEGCARKG 213
Query: 644 ENPGVYTRMTYFLQWI 659
+ G+YT++T FL+WI
Sbjct: 214 KY-GIYTKVTAFLKWI 228
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q I + + H Y +NDI LL+L + N V+PV LP R V
Sbjct: 67 QHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLR--PGTLCTV 124
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDAC-KGDSGGP 612
AGWG R + L VQ +V +C + DP QICVG + + A KGDSGGP
Sbjct: 125 AGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGP 184
Query: 613 LTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
L L N G+VSYG + G P V+TR++ FL WI
Sbjct: 185 L----------LCNNVAHGIVSYGKSSGVP---PEVFTRVSSFLPWI 218
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 67 KRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFD 125
+R + L VQ +V +C + DP QICVG + + + + GDSGGPL
Sbjct: 133 RRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLL------ 186
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDEWILDHLE 178
N G+VSYG P V+TR++ FL WI + +LD +E
Sbjct: 187 ----CNNVAHGIVSYGKSS---GVPPEVFTRVSSFLPWIRTTMRSFKLLDQME 232
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 767 KGQLCVGGKVGKDSC-NGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVY 825
+ Q+CVG + + + GDSGGPL+ GIVS G S+ G+ P V+
Sbjct: 162 RRQICVGDRRERKAAFKGDSGGPLL----------CNNVAHGIVSYGKSS-GV--PPEVF 208
Query: 826 TRTSYFLRWILAT 838
TR S FL WI T
Sbjct: 209 TRVSSFLPWIRTT 221
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 332 QMCVGGNVGKDSC-NGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
Q+CVG + + GDSGGPL G+VS G +S GV P V++R
Sbjct: 164 QICVGDRRERKAAFKGDSGGPLL----------CNNVAHGIVSYGKSS-GVP--PEVFTR 210
Query: 391 TSYFLRWI 398
S FL WI
Sbjct: 211 VSSFLPWI 218
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VR+G++N E V +++V+ + H +T DIA+LRL+
Sbjct: 52 VRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAVLRLKTPIT 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVFNSEECKAR 584
+ V P CLP + + T IV+G+G T E GR S L ++ + CK
Sbjct: 100 FRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS 159
Query: 585 YQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ + C G + DAC+GDSGGP + ++ G+VS+G C K
Sbjct: 160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEGCARKG 213
Query: 644 ENPGVYTRMTYFLQWI 659
+ G+YT++T FL+WI
Sbjct: 214 KY-GIYTKVTAFLKWI 228
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 56 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 103
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 104 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 159
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+G+SGGP+ G L G+VS+G C
Sbjct: 160 YPGKITDNMVCVGFLEGGKDSCQGNSGGPVVCNGE----------LQGIVSWGYGCALP- 208
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 209 DNPGVYTKVCNYVDWIQDTI 228
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 102 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 160
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC G+SGGP+ G L G+VS+G C +
Sbjct: 161 PGKITDNMVCVGFLEGGKDSCQGNSGGPVVCNGE----------LQGIVSWG-YGCALPD 209
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 210 NPGVYTKVCNYVDWIQDTI 228
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 89/240 (37%), Gaps = 72/240 (30%)
Query: 213 GGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPDCS 260
GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 11 GGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----- 65
Query: 261 PDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-------------- 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 66 -----LEGNEQFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP 119
Query: 307 -GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVGKD 342
GT L+ C L AD S +CVG GKD
Sbjct: 120 AGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKD 179
Query: 343 SCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
SC G+SGGP+ G L G+VS G C + + PGVY++ ++ WI D +
Sbjct: 180 SCQGNSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQDTI 228
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC G+SGGP++ G L GIVS G C + PGVYT+
Sbjct: 169 VCVGFLEGGKDSCQGNSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 217
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 218 CNYVDWIQDTIAA 230
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 59 LYQAKRFKVRVGDRNT----------EQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 106
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 107 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYV 166
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 167 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 220
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 221 GEGCARKGKY-GIYTKVTAFLKWI 243
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 150 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 205
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 206 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 243
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 88/248 (35%), Gaps = 78/248 (31%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHD 252
RI+GG K G PW A + HC ++ VR+G+ +
Sbjct: 15 RIVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRN 73
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMS 312
+ + V ++ VV I H F+ E DIA+LRL+ P +
Sbjct: 74 T--------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPA 122
Query: 313 CCYYLAYADNGIS------------------------------IDYNSGQM--------- 333
C +A++ + +D NS ++
Sbjct: 123 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQN 182
Query: 334 --CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
C G + + D+C GDSGGP + ++ G+VS G C G+Y++
Sbjct: 183 MFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTK 235
Query: 391 TSYFLRWI 398
+ FL+WI
Sbjct: 236 VTAFLKWI 243
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 119 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 173
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 174 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 205
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 206 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 243
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+V +G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVKWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+V +G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVKWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 90/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNG----THLMSCC 314
Q + K+I H +F + NDI L++L P +LN L S C
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 315 Y------YLAYADNGISIDYNS---------------------------GQMCVGG-NVG 340
++ N +S N +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+V G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVKWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIV G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVKWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 487 EVCAPPVQDIKVIQFLTHENYTDSGTK--NDIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
E P Q VI+ + H +Y + K +DIALL L++ N YV P+C+
Sbjct: 59 EETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNI 118
Query: 545 NFENENTIVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGK 602
+ + V+GWG V GRS+ L ++ + + C + S+ C G + GK
Sbjct: 119 FLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTKFTIYSNMFCAGFHEGGK 178
Query: 603 DACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILD 661
D+C+GDSGGP + + ++L G++S+G C K + G+YT+++ ++ WI +
Sbjct: 179 DSCQGDSGGPHV------TEVEGTSFLTGIISWGEECAVKGKY-GIYTKVSRYVNWIKE 230
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 83/239 (34%), Gaps = 58/239 (24%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHCATNPEQISSVRLGEHDANSDPDCSP-----DHRQ 265
I+GG AK G PW + C + V H + + +
Sbjct: 1 IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIEPGVKITVVAGEYNTEE 60
Query: 266 CAPPVQDIRVVKVISHEHFSGEPN-MRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGI 324
P Q V++ I H ++ N +DIALL L+ P LN C Y + I
Sbjct: 61 TEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTN--I 118
Query: 325 SIDYNSGQMCVGGNV-------------------------------------------GK 341
+ + SG + G V GK
Sbjct: 119 FLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTKFTIYSNMFCAGFHEGGK 178
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
DSC GDSGGP + + ++L G++S G C V G+Y++ S ++ WI +
Sbjct: 179 DSCQGDSGGPHV------TEVEGTSFLTGIISWGE-ECAVKGKYGIYTKVSRYVNWIKE 230
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 96 SSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
S+ C G + GKDSC GDSGGP + + ++L G++S+G E+C G+Y
Sbjct: 166 SNMFCAGFHEGGKDSCQGDSGGPHV------TEVEGTSFLTGIISWG-EECAVKGKYGIY 218
Query: 155 TRMTYFLQWILD 166
T+++ ++ WI +
Sbjct: 219 TKVSRYVNWIKE 230
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 39/163 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQL-VYDRYLCTAIYERN 732
YV P+C+ + + V+GWG + S +L ++ + DR C
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCL------ 157
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
+ +Y C +E GKDSC GDSGGP +
Sbjct: 158 -------RSTKFTIYSNMFCAGFHEG------------------GKDSCQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ ++L GI+S G C + G+YT+ S ++ WI
Sbjct: 191 ----TEVEGTSFLTGIISWGEE-CAVKGKYGIYTKVSRYVNWI 228
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ N+I L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNG----THLMSCC 314
Q + K+I H +F + N+I L++L P +LN L S C
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNNIMLIKLSSPVKLNARVATVALPSSC 109
Query: 315 Y------YLAYADNGISIDYNS---------------------------GQMCVGG-NVG 340
++ N +S N +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+V +G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVEWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+V +G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVEWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 90/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+V G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVEWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIV G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVEWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 11/170 (6%)
Query: 494 QDIKVIQFLTHENYTDSGTK--NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q VI+ + H NY + K +DIALL L++ N YV P+C+ + +
Sbjct: 66 QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 552 IVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDS 609
V+GWG V GRS+L L ++ + + C + ++ C G + G+D+C+GD+
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDA 185
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGP + + ++L G++S+G C K + G+YT+++ ++ WI
Sbjct: 186 GGPHV------TEVEGTSFLTGIISWGEECAMKGKY-GIYTKVSRYVNWI 228
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 37/162 (22%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
YV P+C+ + + V+GWG K S ++L +YL + +R
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVL--------QYLRVPLVDRAT 155
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMG 793
T +Y+ C +E G+DSC GD+GGP +
Sbjct: 156 CLRSTK----FTIYNNMFCAGFHEG------------------GRDSCQGDAGGPHV--- 190
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ ++L GI+S G C M G+YT+ S ++ WI
Sbjct: 191 ---TEVEGTSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWI 228
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 89/248 (35%), Gaps = 80/248 (32%)
Query: 211 IIGGYVAKLGSIPW----------------IARIAYSRTPHCATNPEQISSVRLGEHDAN 254
++GG AK G PW + HC +I+ V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV-AGEHNIE 59
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN-DIALLRLERPPRLNGTHLMSC 313
+H + Q V+++I H +++ N N DIALL L+ P LN C
Sbjct: 60 E-----TEHTE-----QKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPIC 109
Query: 314 CYYLAYADNGISIDYNSGQMCVGGNV---------------------------------- 339
Y + I + + SG + G V
Sbjct: 110 IADKEYTN--IFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNN 167
Query: 340 ---------GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
G+DSC GD+GGP + + ++L G++S G C + G+Y++
Sbjct: 168 MFCAGFHEGGRDSCQGDAGGPHV------TEVEGTSFLTGIISWGE-ECAMKGKYGIYTK 220
Query: 391 TSYFLRWI 398
S ++ WI
Sbjct: 221 VSRYVNWI 228
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDS 126
R +L L ++ + + C + ++ C G + G+DSC GD+GGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDAGGPHV------T 191
Query: 127 AISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++L G++S+G E+C G+YT+++ ++ WI
Sbjct: 192 EVEGTSFLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GD GGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDCGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GD GGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDCGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 90/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GD GGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDCGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GD GGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDCGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 11/170 (6%)
Query: 494 QDIKVIQFLTHENYTDS--GTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q VI+ + H NY + +DIALL L++ N YV P+C+ + +
Sbjct: 66 QKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 552 IVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDS 609
V+GWG V GRS+L L ++ + + C + ++ C G + G+D+C+GDS
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDS 185
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGP + + ++L G++S+G C K + G+YT+++ ++ WI
Sbjct: 186 GGPHV------TEVEGTSFLTGIISWGEECAMKGKY-GIYTKVSRYVNWI 228
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 89/248 (35%), Gaps = 80/248 (32%)
Query: 211 IIGGYVAKLGSIPW----------------IARIAYSRTPHCATNPEQISSVRLGEHDAN 254
++GG AK G PW + HC +I+ V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV-AGEHNIE 59
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN-DIALLRLERPPRLNGTHLMSC 313
+H + Q V+++I H +++ N N DIALL L+ P LN C
Sbjct: 60 E-----TEHTE-----QKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPIC 109
Query: 314 CYYLAYADNGISIDYNSGQMCVGGNV---------------------------------- 339
Y + I + + SG + G V
Sbjct: 110 IADKEYTN--IFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNN 167
Query: 340 ---------GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
G+DSC GDSGGP + + ++L G++S G C + G+Y++
Sbjct: 168 MFCAGFHEGGRDSCQGDSGGPHV------TEVEGTSFLTGIISWGE-ECAMKGKYGIYTK 220
Query: 391 TSYFLRWI 398
S ++ WI
Sbjct: 221 VSRYVNWI 228
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDS 126
R +L L ++ + + C + ++ C G + G+DSC GDSGGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHV------T 191
Query: 127 AISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++L G++S+G E+C G+YT+++ ++ WI
Sbjct: 192 EVEGTSFLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 39/163 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
YV P+C+ + + V+GWG K S ++L +YL + +R
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVL--------QYLRVPLVDR-- 153
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWM 792
CL ++ T C G + G+DSC GDSGGP +
Sbjct: 154 --------ATCLRSTKFTIT-------------NNMFCAGFHEGGRDSCQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ ++L GI+S G C M G+YT+ S ++ WI
Sbjct: 191 ----TEVEGTSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWI 228
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 490 APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
+P ++ + Q + + +Y NDIA++ LE + Y+ P+CLP N +
Sbjct: 67 SPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFP--PGR 124
Query: 550 NTIVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELD-PSSQICVGGKVGK-DACK 606
+AGWG + G ++ L + ++E+C+ + E + + +C G + G D+C+
Sbjct: 125 ICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQ 184
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
GDSGGPL + R L G+ S+G C + PGVY R+ F +WI L
Sbjct: 185 GDSGGPLMCQEN------NRWLLAGVTSFGYQCALPNR-PGVYARVPRFTEWIQSFL 234
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 42/175 (24%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
HLE +VN + Y+QP+CLP + + G+ +AGWG L+Y
Sbjct: 97 HLEMKVNYTD--YIQPICLPEEN--QVFPPGRICSIAGWG---------------ALIYQ 137
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGK-DS 780
+ E + + K Q + + + +C G + G DS
Sbjct: 138 GSTADVLQEADVPLLSNEKCQ---------------QQMPEYNITENMVCAGYEAGGVDS 182
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
C GDSGGPLM + R L G+ S G C + PGVY R F WI
Sbjct: 183 CQGDSGGPLMCQE------NNRWLLAGVTSFG-YQCALPNRPGVYARVPRFTEWI 230
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 80 VFNSEKCKARYQKLD-PSSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ ++EKC+ + + + + +C G + G DSC GDSGGPL + R L G+
Sbjct: 151 LLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQGDSGGPLM------CQENNRWLLAGV 204
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
S+G + C PGVY R+ F +WI L
Sbjct: 205 TSFGYQ-CALPNRPGVYARVPRFTEWIQSFL 234
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 57/152 (37%), Gaps = 33/152 (21%)
Query: 257 PDCSPDHRQCAPP--VQDIRVVKVISHEHFSGEPNMRNDIALLRLER----PPRLNGTHL 310
P C P+ Q PP + I + ++ + + D+ LL E+ P N T
Sbjct: 110 PICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITEN 169
Query: 311 MSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIG 370
M C Y A G DSC GDSGGPL + R L G
Sbjct: 170 MVCAGYEA--------------------GGVDSCQGDSGGPLM------CQENNRWLLAG 203
Query: 371 LVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
+ S G C + PGVY+R F WI L
Sbjct: 204 VTSFG-YQCALPNRPGVYARVPRFTEWIQSFL 234
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G E Q + + + H N+ N+I L++L +
Sbjct: 48 VRLGEHNINV------LEGDE------QFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GKD+C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GKDSC GDSGGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 91/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV--- 57
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + N+I L++L P +LN
Sbjct: 58 -------LEGDEQFVNAAKIIKHPNFD-RKTLNNNIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KDSC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GK +C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKSSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NPGVYT++ ++ WI D +
Sbjct: 201 DNPGVYTKVCNYVDWIQDTI 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GK SC GDSGGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKSSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NPGVYT++ ++ WI D +
Sbjct: 202 NPGVYTKVCNYVDWIQDTI 220
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 90/242 (37%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
K SC GDSGGP+ G L G+VS G C + + PGVY++ ++ WI D
Sbjct: 170 KSSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GK SC GDSGGP++ G L GIVS G C + PGVYT+
Sbjct: 161 VCVGFLEGGKSSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GD+GGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDAGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E R S L ++ + CK + + C G + D+C GD+GGP
Sbjct: 135 EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDAGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GD+GGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDAGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 87/247 (35%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ + V ++ VV I H F+ E DIA+LRL+ P +C
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAC 108
Query: 314 CYYLAYADNGIS------------------------------IDYNSGQM---------- 333
+A++ + +D NS ++
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNM 168
Query: 334 -CVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + + D+C GD+GGP + ++ G+VS G C G+Y++
Sbjct: 169 FCAGYDTKQEDACQGDAGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKV 221
Query: 392 SYFLRWI 398
+ FL+WI
Sbjct: 222 TAFLKWI 228
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 30/208 (14%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N + G E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRNT------EQEEGGEA----VHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVF 576
LRL+ + V P LP T +++GWG T + EL + V
Sbjct: 92 LRLKTPITFRMNVAPASLPTAPPAT----GTKCLISGWGNTASSGADYPDELQCLDAPVL 147
Query: 577 NSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ +C+A Y S+ CVG + GKD+C+GDSGGP+ G L G+VS+
Sbjct: 148 SQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGVVSW 197
Query: 636 GPTCGTKSENPGVYTRMTYFLQWILDHL 663
G C K++ PGVYT++ +++WI + +
Sbjct: 198 GDGCAQKNK-PGVYTKVYNYVKWIKNTI 224
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
EL + V + KC+A Y S+ CVG + GKDSC GDSGGP+ G
Sbjct: 138 ELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ------- 190
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G + C + PGVYT++ +++WI + +
Sbjct: 191 ---LQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTI 224
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 89/247 (36%), Gaps = 78/247 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-----------------TPHCATNPEQISSVRLGEHDA 253
I+GGY K G +PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP----------- 302
+ + V ++ VV I H F+ E DIA+LRL+ P
Sbjct: 60 --------EQEEGGEAVHEVEVV--IKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAS 108
Query: 303 ----PRLNGTHLM------SCCYYLAYADNGISID----------------YNSGQMCVG 336
P GT + + Y D +D S CVG
Sbjct: 109 LPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVG 168
Query: 337 G-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFL 395
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++
Sbjct: 169 FLEGGKDSCQGDSGGPVVCNGQ----------LQGVVSWGDG-CAQKNKPGVYTKVYNYV 217
Query: 396 RWILDHL 402
+WI + +
Sbjct: 218 KWIKNTI 224
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKDSC GDSGGP++ G L G+VS G C PGVYT+
Sbjct: 165 FCVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGVVSWGDG-CAQKNKPGVYTKV 213
Query: 829 SYFLRWILATPEA 841
+++WI T A
Sbjct: 214 YNYVKWIKNTIAA 226
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + + G+E Q I + + H Y NDI L++L
Sbjct: 48 VRLGEHNI------KVLEGNE------QFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAV 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKAR 584
N V + LP +++GWG T + EL + V ECKA
Sbjct: 96 INARVSTISLPTAPPAA----GTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y +S CVG + GKD+C+ D+GGP+ G L G+VS+G C K+
Sbjct: 152 YPGKITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ----------LQGVVSWGHGCAWKN 201
Query: 644 ENPGVYTRMTYFLQWILDHL 663
PGVYT++ ++ WI D +
Sbjct: 202 R-PGVYTKVYNYVDWIKDTI 220
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
EL + V +CKA Y +S CVG + GKDSC D+GGP+ G
Sbjct: 134 ELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ------- 186
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G C PGVYT++ ++ WI D +
Sbjct: 187 ---LQGVVSWG-HGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 87/245 (35%), Gaps = 78/245 (31%)
Query: 211 IIGGYVAKLGSIPW---------------IARIAYSRTPHCATNPEQISSVRLGEHDANS 255
I+GGY + S+P+ I+ HC Q VRLGEH+
Sbjct: 1 IVGGYTCEENSLPYQVSLNSGYHFCGGSLISEQWVVSAAHCYKTRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
+ Q I K+I H ++ + + NDI L++L P +N
Sbjct: 56 --------KVLEGNEQFINAAKIIRHPKYNRD-TLDNDIMLIKLSSPAVINARVSTISLP 106
Query: 307 ------GTHLM------SCCYYLAYADNGISID----------------YNSGQMCVGG- 337
GT + + + Y D +D + CVG
Sbjct: 107 TAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC D+GGP+ G L G+VS G C PGVY++ ++ W
Sbjct: 167 EGGKDSCQRDAGGPVVCNGQ----------LQGVVSWGHG-CAWKNRPGVYTKVYNYVDW 215
Query: 398 ILDHL 402
I D +
Sbjct: 216 IKDTI 220
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKDSC D+GGP++ G L G+VS G C PGVYT+
Sbjct: 161 FCVGFLEGGKDSCQRDAGGPVVCNGQ----------LQGVVSWGHG-CAWKNRPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 YNYVDWIKDTIAA 222
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + + G+E Q I + + H Y NDI L++L
Sbjct: 48 VRLGEHNI------KVLEGNE------QFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAV 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKAR 584
N V + LP +++GWG T + EL + V ECKA
Sbjct: 96 INARVSTISLPTAPPAA----GTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y +S CVG + GKD+C+ D+GGP+ G L G+VS+G C K+
Sbjct: 152 YPGKITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ----------LQGVVSWGHGCAWKN 201
Query: 644 ENPGVYTRMTYFLQWILDHL 663
PGVYT++ ++ WI D +
Sbjct: 202 R-PGVYTKVYNYVDWIKDTI 220
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
EL + V +CKA Y +S CVG + GKDSC D+GGP+ G
Sbjct: 134 ELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ------- 186
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+VS+G C PGVYT++ ++ WI D +
Sbjct: 187 ---LQGVVSWG-HGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 87/245 (35%), Gaps = 78/245 (31%)
Query: 211 IIGGYVAKLGSIPW---------------IARIAYSRTPHCATNPEQISSVRLGEHDANS 255
I+GGY + S+P+ I+ HC Q VRLGEH+
Sbjct: 1 IVGGYTCEENSLPYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
+ Q I K+I H ++ + + NDI L++L P +N
Sbjct: 56 --------KVLEGNEQFINAAKIIRHPKYNRD-TLDNDIMLIKLSSPAVINARVSTISLP 106
Query: 307 ------GTHLM------SCCYYLAYADNGISID----------------YNSGQMCVGG- 337
GT + + + Y D +D + CVG
Sbjct: 107 TAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC D+GGP+ G L G+VS G C PGVY++ ++ W
Sbjct: 167 EGGKDSCQRDAGGPVVCNGQ----------LQGVVSWGHG-CAWKNRPGVYTKVYNYVDW 215
Query: 398 ILDHL 402
I D +
Sbjct: 216 IKDTI 220
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKDSC D+GGP++ G L G+VS G C PGVYT+
Sbjct: 161 FCVGFLEGGKDSCQRDAGGPVVCNGQ----------LQGVVSWGHG-CAWKNRPGVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 YNYVDWIKDTIAA 222
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 31/197 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 W-NGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKA 583
+ V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LXDSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS 151
Query: 584 RYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
Y S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K
Sbjct: 152 AYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQK 201
Query: 643 SENPGVYTRMTYFLQWI 659
++ PGVYT++ ++ WI
Sbjct: 202 NK-PGVYTKVCNYVSWI 217
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G + GKDSC GDSGGP+ G
Sbjct: 136 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK-------- 187
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+VS+G C + PGVYT++ ++ WI
Sbjct: 188 --LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 217
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 170 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 218
Query: 837 AT 838
T
Sbjct: 219 QT 220
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 170 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 217
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/167 (35%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q I + + H Y +NDI LL+L + N V+PV LP R V
Sbjct: 67 QHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLR--PGTLCTV 124
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDAC-KGDSGGP 612
AGWG R + L VQ +V +C + DP QICVG + + A KGDSGGP
Sbjct: 125 AGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGP 184
Query: 613 LTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
L L N G+VSYG + G P V+TR++ FL WI
Sbjct: 185 L----------LCNNVAHGIVSYGKSSGVP---PEVFTRVSSFLPWI 218
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 67 KRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFD 125
+R + L VQ +V +C + DP QICVG + + + + GDSGGPL
Sbjct: 133 RRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLL------ 186
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
N G+VSYG P V+TR++ FL WI
Sbjct: 187 ----CNNVAHGIVSYGKS---SGVPPEVFTRVSSFLPWI 218
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 769 QLCVGGKVGKDSC-NGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
Q+CVG + + + GDSGGPL+ GIVS G S+ G+ P V+TR
Sbjct: 164 QICVGDRRERKAAFKGDSGGPLL----------CNNVAHGIVSYGKSS-GV--PPEVFTR 210
Query: 828 TSYFLRWILAT 838
S FL WI T
Sbjct: 211 VSSFLPWIRTT 221
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 332 QMCVGGNVGKDSC-NGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
Q+CVG + + GDSGGPL G+VS G +S GV P V++R
Sbjct: 164 QICVGDRRERKAAFKGDSGGPLL----------CNNVAHGIVSYGKSS-GV--PPEVFTR 210
Query: 391 TSYFLRWI 398
S FL WI
Sbjct: 211 VSSFLPWI 218
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 496 IKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVA- 554
I+ F HENY NDIA++RL + V LP + T+V
Sbjct: 68 IQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGV------GTVVTP 121
Query: 555 -GWGVTEDGRSSLE--LLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGG 611
GWG+ D + L V + ++ +C A Y + IC+ GK C GDSGG
Sbjct: 122 TGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG-IVTDGNICIDSTGGKGTCNGDSGG 180
Query: 612 PLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
PL + G G+ S+G G ++ P +TR+TYFL WI
Sbjct: 181 PLNYNG----------LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 752 CTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSL 811
C A+Y GI D G +C+ GK +CNGDSGGPL + G TY GI S
Sbjct: 151 CDAVY---GIVTD---GNICIDSTGGKGTCNGDSGGPLNYNG--------LTY--GITSF 194
Query: 812 GPSTCGMLRIPGVYTRTSYFLRWI 835
G + P +TR +YFL WI
Sbjct: 195 GAAAGCEAGYPDAFTRVTYFLDWI 218
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 331 GQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
G +C+ GK +CNGDSGGPL + G TY G+ S G A+ P ++R
Sbjct: 161 GNICIDSTGGKGTCNGDSGGPLNYNG--------LTY--GITSFGAAAGCEAGYPDAFTR 210
Query: 391 TSYFLRWI 398
+YFL WI
Sbjct: 211 VTYFLDWI 218
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN 132
L V + ++ C A Y + IC+ GK +C GDSGGPL + G
Sbjct: 138 LRQVDVPIMSNADCDAVY-GIVTDGNICIDSTGGKGTCNGDSGGPLNYNG---------- 186
Query: 133 YLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+ S+G + P +TR+TYFL WI
Sbjct: 187 LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-- 551
Q + ++ + H Y+ G ND+ L++L + V P+ ++ + + T
Sbjct: 66 QMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPI------NVSSHCPSAGTKC 119
Query: 552 IVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDS 609
+V+GWG T+ + L + V + + C+ Y + C G K G+D+C+GDS
Sbjct: 120 LVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQGDS 179
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
GGP+ GS L GLVS+G + PGVYT + F +WI + ++
Sbjct: 180 GGPVVCNGS----------LQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 67 KRPSLELLAVQQ----KVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMG 122
K P + V Q V + ++C+ Y + + C G K G+DSC GDSGGP+ G
Sbjct: 128 KSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQGDSGGPVVCNG 187
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S L GLVS+G C + PGVYT + F +WI + ++
Sbjct: 188 S----------LQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTS 829
C G K G+DSC GDSGGP++ GS L G+VS G C PGVYT
Sbjct: 164 FCAGDKAGRDSCQGDSGGPVVCNGS----------LQGLVSWGDYPCARPNRPGVYTNLC 213
Query: 830 YFLRWILATPEA 841
F +WI T +A
Sbjct: 214 KFTKWIQETIQA 225
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 269 PVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDY 328
P +D+R + V SH +G + ++ + P+++ ++ C + Y
Sbjct: 99 PTKDVRPINVSSHCPSAGTKCL---VSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAY 155
Query: 329 ----NSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
+ C G G+DSC GDSGGP+ GS L GLVS G C
Sbjct: 156 PRQIDDTMFCAGDKAGRDSCQGDSGGPVVCNGS----------LQGLVSWGDYPCARPNR 205
Query: 385 PGVYSRTSYFLRWILDHLD 403
PGVY+ F +WI + +
Sbjct: 206 PGVYTNLCKFTKWIQETIQ 224
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 11/170 (6%)
Query: 494 QDIKVIQFLTHENYTDS--GTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q VI+ + H N+ + +DIALL L++ N YV P+C+ + +
Sbjct: 66 QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 552 IVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDS 609
V+GWG V GRS+L L ++ + + C + ++ C G + G+D+C+GDS
Sbjct: 126 YVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDS 185
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGP + + ++L G++S+G C K + G+YT+++ ++ WI
Sbjct: 186 GGPHV------TEVEGTSFLTGIISWGEECAMKGKY-GIYTKVSRYVNWI 228
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 89/248 (35%), Gaps = 80/248 (32%)
Query: 211 IIGGYVAKLGSIPW----------------IARIAYSRTPHCATNPEQISSVRLGEHDAN 254
++GG AK G PW + HC +I+ V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV-AGEHNIE 59
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN-DIALLRLERPPRLNGTHLMSC 313
+H + Q V+++I H +F+ N N DIALL L+ P LN C
Sbjct: 60 E-----TEHTE-----QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPIC 109
Query: 314 CYYLAYADNGISIDYNSGQMCVGGNV---------------------------------- 339
Y + I + + SG + G V
Sbjct: 110 IADKEYTN--IFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNN 167
Query: 340 ---------GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
G+DSC GDSGGP + + ++L G++S G C + G+Y++
Sbjct: 168 MFCAGFHEGGRDSCQGDSGGPHV------TEVEGTSFLTGIISWGE-ECAMKGKYGIYTK 220
Query: 391 TSYFLRWI 398
S ++ WI
Sbjct: 221 VSRYVNWI 228
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 39/163 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
YV P+C+ + + V+GWG K S ++L +YL + +R
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVL--------QYLRVPLVDR-- 153
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWM 792
CL ++ T C G + G+DSC GDSGGP +
Sbjct: 154 --------ATCLRSTKFTIT-------------NNMFCAGFHEGGRDSCQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ ++L GI+S G C M G+YT+ S ++ WI
Sbjct: 191 ----TEVEGTSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWI 228
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDS 126
R +L L ++ + + C + ++ C G + G+DSC GDSGGP +
Sbjct: 138 RSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHV------T 191
Query: 127 AISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++L G++S+G E+C G+YT+++ ++ WI
Sbjct: 192 EVEGTSFLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
PP+Q+ V + + HE Y NDIAL+++ ++ P CLP A +
Sbjct: 77 PPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPR-APQT 135
Query: 551 TIVAGWG-VTEDG-RSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVGGKVGK-DAC 605
V GWG + E G R+S L + + + E C + Y S+ +C G GK D C
Sbjct: 136 CWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTC 195
Query: 606 KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
+GDSGGPL ++ + ++G+ S+G C +++ PGVYT +L WI +
Sbjct: 196 QGDSGGPLMCRDRAENTFV----VVGITSWGVGC-ARAKRPGVYTSTWPYLNWIASKI 248
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 748 DRYLCTAIYERNGISIDTNKGQLCVGGKVGK-DSCNGDSGGPLMWMGSFDRSISARTY-L 805
D LC + NG TN +C G GK D+C GDSGGPLM R + T+ +
Sbjct: 164 DLELCNSTRWYNGRIRSTN---VCAGYPRGKIDTCQGDSGGPLM-----CRDRAENTFVV 215
Query: 806 LGIVSLGPSTCGMLRIPGVYTRTSYFLRWILA 837
+GI S G C + PGVYT T +L WI +
Sbjct: 216 VGITSWG-VGCARAKRPGVYTSTWPYLNWIAS 246
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 68 RPSLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGSF 124
R S L + + + E C + Y S+ +C G GK D+C GDSGGPL
Sbjct: 150 RTSPTLQEARVALIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTCQGDSGGPLMCRDRA 209
Query: 125 DSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
++ ++G+ S+G C + + PGVYT +L WI +
Sbjct: 210 ENTF----VVVGITSWG-VGCARAKRPGVYTSTWPYLNWIASKI 248
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 100/264 (37%), Gaps = 74/264 (28%)
Query: 211 IIGGYVAKLGSIPWIARIAYS----------------------RTPHCATNPEQISSVRL 248
++GG A+ G+ PW+ + HC N ++++ RL
Sbjct: 1 VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFKNKKKVTDWRL 60
Query: 249 GEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP------ 302
++ ++ PP+Q+ V ++I HE + + NDIAL+++ P
Sbjct: 61 ---IFGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEI-NDIALIKITPPVPCGPF 116
Query: 303 -------------PRLNGTHLMSCCYYLAYADNGIS----------ID---------YN- 329
PR T ++ YL S ID YN
Sbjct: 117 IGPGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNG 176
Query: 330 ---SGQMCVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
S +C G GK D+C GDSGGPL ++ ++G+ S G C + P
Sbjct: 177 RIRSTNVCAGYPRGKIDTCQGDSGGPLMCRDRAENTF----VVVGITSWG-VGCARAKRP 231
Query: 386 GVYSRTSYFLRWILDHLDDHFVRL 409
GVY+ T +L WI + + +++
Sbjct: 232 GVYTSTWPYLNWIASKIGSNALQM 255
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 502 LTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED 561
+ ++NY D +ND+AL+ L ++N V P+ L + + E+ + GWG T
Sbjct: 74 VVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTND---EDLESNPCTLTGWGSTRL 130
Query: 562 GRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDS 621
G ++ L + + + ++ R Q S IC K G+ AC GDSGGPL
Sbjct: 131 GGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEGACHGDSGGPL-------- 182
Query: 622 AILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+A IG+VS+G C P VYTR++ F+ WI +L+
Sbjct: 183 --VANGAQIGIVSFGSPCALGE--PDVYTRVSSFVSWINANLK 221
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 18/107 (16%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMG 122
+T + +EL+ QK +C+ R Q S IC K G+ +C+GDSGGPL G
Sbjct: 133 NTPNALQEIELIVHPQK-----QCE-RDQWRVIDSHICTLTKRGEGACHGDSGGPLVANG 186
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ IG+VS+G C E P VYTR++ F+ WI +L+
Sbjct: 187 A----------QIGIVSFGSP-CALGE-PDVYTRVSSFVSWINANLK 221
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 769 QLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+C K G+ +C+GDSGGPL+ G+ +GIVS G S C + P VYTR
Sbjct: 162 HICTLTKRGEGACHGDSGGPLVANGA----------QIGIVSFG-SPCALGE-PDVYTRV 209
Query: 829 SYFLRWILA 837
S F+ WI A
Sbjct: 210 SSFVSWINA 218
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 12/67 (17%)
Query: 332 QMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
+C G+ +C+GDSGGPL G+ IG+VS G + C + E P VY+R
Sbjct: 162 HICTLTKRGEGACHGDSGGPLVANGA----------QIGIVSFG-SPCALGE-PDVYTRV 209
Query: 392 SYFLRWI 398
S F+ WI
Sbjct: 210 SSFVSWI 216
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 464 DHIVRLGEQNVITD-PDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLE 522
++ V LG+ N+ D P Q+ + P ++ +++ H + + ND+ LLRL
Sbjct: 46 NYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFNMSLMR--KHIRFLEYDYSNDLMLLRLS 103
Query: 523 KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEE 580
K + V P+ LP + +GWG + +L V K+ +E+
Sbjct: 104 KPADITDTVKPITLPTEEPKL----GSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNED 159
Query: 581 CKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTC 639
C + E + +C G GKD CKGDSGGPL + L G+ S+G T
Sbjct: 160 CAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPL----------ICDGVLQGITSWGHTP 209
Query: 640 GTKSENPGVYTRMTYFLQWILDHL 663
+ + PGVYT++ F WI D +
Sbjct: 210 CGEPDMPGVYTKLNKFTSWIKDTM 233
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
+L V K+ +E C + + + +C G GKD+C GDSGGPL G
Sbjct: 146 DLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPLICDG-------- 197
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+ S+G CG+ + PGVYT++ F WI D +
Sbjct: 198 --VLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 93/256 (36%), Gaps = 87/256 (33%)
Query: 211 IIGGYVAKLGSIPW-IARIAYSR---------------TPHCATNPEQISSVRLGEHDAN 254
I+GG+ + S PW +A Y++ HC + + V LG+++
Sbjct: 1 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCYDDNYK---VWLGKNNLF 57
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSG----------EPNMRNDIALLRLERP-- 302
D P Q V K I H F+ E + ND+ LLRL +P
Sbjct: 58 KD----------EPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPAD 107
Query: 303 --------------PRLNGTHLMS----------------CCYYLAYADN----GISIDY 328
P+L T L S C L N I+
Sbjct: 108 ITDTVKPITLPTEEPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAHIEK 167
Query: 329 NSGQMCVGGNV--GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPG 386
+ M G + GKD+C GDSGGPL G L G+ S G CG ++PG
Sbjct: 168 VTDAMLCAGEMDGGKDTCKGDSGGPLICDG----------VLQGITSWGHTPCGEPDMPG 217
Query: 387 VYSRTSYFLRWILDHL 402
VY++ + F WI D +
Sbjct: 218 VYTKLNKFTSWIKDTM 233
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 768 GQLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
LC G GKD+C GDSGGPL+ G L GI S G + CG +PGVYT
Sbjct: 171 AMLCAGEMDGGKDTCKGDSGGPLICDG----------VLQGITSWGHTPCGEPDMPGVYT 220
Query: 827 RTSYFLRWILAT 838
+ + F WI T
Sbjct: 221 KLNKFTSWIKDT 232
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E G S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 23/147 (15%)
Query: 254 NSDPDCSP--DHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLM 311
N P C P D + Q +V H GE + R L LE P + +
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTR----LKMLEVPYVDRNSCKL 158
Query: 312 SCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGL 371
S + + N Y++ Q +D+C GDSGGP + ++ G+
Sbjct: 159 SSSFIIT--QNMFCAGYDTKQ--------EDACQGDSGGPHV------TRFKDTYFVTGI 202
Query: 372 VSLGPASCGVYEIPGVYSRTSYFLRWI 398
VS G C G+Y++ + FL+WI
Sbjct: 203 VSWGEG-CARKGKYGIYTKVTAFLKWI 228
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N E V +++V+ + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRN----------TEQEEGGEAVHEVEVV--IKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E G S L ++
Sbjct: 92 LRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + + C G + DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + G+YT++T FL+WI
Sbjct: 206 GEGCARKGKY-GIYTKVTAFLKWI 228
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGS 123
E S L ++ + CK + + C G + D+C GDSGGP
Sbjct: 135 EKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + G+YT++T FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKYGIYTKVTAFLKWI 228
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S + C YD +D+C GDSGGP +
Sbjct: 159 SSSFIITQNMFCAGYDTKQ--------------------------EDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C G+YT+ + FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWI 228
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 23/147 (15%)
Query: 254 NSDPDCSP--DHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLM 311
N P C P D + Q +V H GE + R L LE P + +
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTR----LKMLEVPYVDRNSCKL 158
Query: 312 SCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGL 371
S + + N Y++ Q +D+C GDSGGP + ++ G+
Sbjct: 159 SSSFIIT--QNMFCAGYDTKQ--------EDACQGDSGGPHV------TRFKDTYFVTGI 202
Query: 372 VSLGPASCGVYEIPGVYSRTSYFLRWI 398
VS G C G+Y++ + FL+WI
Sbjct: 203 VSWGEG-CARKGKYGIYTKVTAFLKWI 228
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 500 QFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG-V 558
+ + HE Y DI+L L + VH VCLP +A + V G+G +
Sbjct: 71 RIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLP--DASYEFQPGDVMFVTGFGAL 128
Query: 559 TEDGRSSLELLAVQQKVFNSEECK--ARYQELDPSSQICVGGKVGK-DACKGDSGGPLTW 615
DG S L Q + ++ C Y + +C G GK DAC+GDSGGPL
Sbjct: 129 KNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLV- 187
Query: 616 MGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
S D+ + YL G+VS+G C K PGVYTR+T WI
Sbjct: 188 --SSDARDIW--YLAGIVSWGDECA-KPNKPGVYTRVTALRDWI 226
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 99 ICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISARN--YLIGLVSYGPEDCGKTENPGVYT 155
+C G GK D+C GDSGGPL + AR+ YL G+VS+G E C K PGVYT
Sbjct: 166 LCAGSLEGKTDACQGDSGGPLV-------SSDARDIWYLAGIVSWGDE-CAKPNKPGVYT 217
Query: 156 RMTYFLQWI 164
R+T WI
Sbjct: 218 RVTALRDWI 226
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 770 LCVGGKVGK-DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
LC G GK D+C GDSGGPL + S R I YL GIVS G C PGVYTR
Sbjct: 166 LCAGSLEGKTDACQGDSGGPL--VSSDARDI---WYLAGIVSWG-DECAKPNKPGVYTRV 219
Query: 829 SYFLRWILA 837
+ WI +
Sbjct: 220 TALRDWITS 228
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 85/240 (35%), Gaps = 66/240 (27%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHCATNPEQISSVRLGEHDANSDPDCSPDHRQCA--- 267
I+GG + G PW A + + + C + + H C ++ A
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAH-------CFTTYKNPARWT 53
Query: 268 --------PPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP-PRLNGTH--------- 309
P + ++I HE + P+ DI+L L P P N H
Sbjct: 54 ASFGVTIKPSKMKRGLRRIIVHEKYK-HPSHDYDISLAELSSPVPYTNAVHRVCLPDASY 112
Query: 310 ------LMSCCYYLAYADNGIS-----------ID---------YNSG----QMCVGGNV 339
+M + A ++G S ID YN +C G
Sbjct: 113 EFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLE 172
Query: 340 GK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GK D+C GDSGGPL + D YL G+VS G C PGVY+R + WI
Sbjct: 173 GKTDACQGDSGGPLVSSDARDI-----WYLAGIVSWGD-ECAKPNKPGVYTRVTALRDWI 226
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 500 QFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG-V 558
+ + + +Y NDIA++ LE + Y+ P+ LP N + N +AGWG V
Sbjct: 77 EIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFP--PGRNCSIAGWGTV 134
Query: 559 TEDGRSSLELLAVQQKVFNSEECKARYQELD-PSSQICVGGKVGK-DACKGDSGGPLTWM 616
G ++ L + ++E C+ + E + + IC G + G D+C+GDSGGPL
Sbjct: 135 VYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQ 194
Query: 617 GSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
+ R +L G+ S+G C + PGVY R++ F +WI L
Sbjct: 195 EN------NRWFLAGVTSFGYECALPNR-PGVYARVSRFTEWIQSFL 234
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
HLE +VN + Y+QP+ LP + + G++ +AGWG
Sbjct: 97 HLEFKVNYTD--YIQPISLPEEN--QVFPPGRNCSIAGWG-------------------- 132
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGK-DS 780
T +Y+ I + + L+ + + E N + +C G + G DS
Sbjct: 133 ----TVVYQGTTADI-LQEADVPLLSNERCQQQMPEYN-----ITENMICAGYEEGGIDS 182
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
C GDSGGPLM + R +L G+ S G C + PGVY R S F WI
Sbjct: 183 CQGDSGGPLMCQE------NNRWFLAGVTSFG-YECALPNRPGVYARVSRFTEWI 230
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 80 VFNSEKCKARYQKLD-PSSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ ++E+C+ + + + + IC G + G DSC GDSGGPL + R +L G+
Sbjct: 151 LLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLM------CQENNRWFLAGV 204
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
S+G E C PGVY R++ F +WI L
Sbjct: 205 TSFGYE-CALPNRPGVYARVSRFTEWIQSFL 234
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 60/152 (39%), Gaps = 33/152 (21%)
Query: 257 PDCSPDHRQCAPPVQDIRVVK--VISHEHFSGEPNMRNDIALLRLER----PPRLNGTHL 310
P P+ Q PP ++ + + ++ + + D+ LL ER P N T
Sbjct: 110 PISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITEN 169
Query: 311 MSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIG 370
M C Y + GI DSC GDSGGPL + R +L G
Sbjct: 170 MICA---GYEEGGI-----------------DSCQGDSGGPLM------CQENNRWFLAG 203
Query: 371 LVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
+ S G C + PGVY+R S F WI L
Sbjct: 204 VTSFG-YECALPNRPGVYARVSRFTEWIQSFL 234
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 11/170 (6%)
Query: 494 QDIKVIQFLTHENYTDS--GTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q VI+ + H N+ + +DIALL L++ N YV P+C+ + +
Sbjct: 66 QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSG 125
Query: 552 IVAGWG-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDS 609
V+GWG V GR++L L ++ + + C + ++ C G + G+D+C+GDS
Sbjct: 126 YVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDS 185
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGP + + ++L G++S+G C K + G+YT+++ ++ WI
Sbjct: 186 GGPHV------TEVEGTSFLTGIISWGEECAMKGKY-GIYTKVSRYVNWI 228
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 89/248 (35%), Gaps = 80/248 (32%)
Query: 211 IIGGYVAKLGSIPW----------------IARIAYSRTPHCATNPEQISSVRLGEHDAN 254
++GG AK G PW + HC +I+ V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV-AGEHNIE 59
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN-DIALLRLERPPRLNGTHLMSC 313
+H + Q V+++I H +F+ N N DIALL L+ P LN C
Sbjct: 60 E-----TEHTE-----QKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPIC 109
Query: 314 CYYLAYADNGISIDYNSGQMCVGGNV---------------------------------- 339
Y + I + + SG + G V
Sbjct: 110 IADKEYTN--IFLKFGSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTKFTITNN 167
Query: 340 ---------GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
G+DSC GDSGGP + + ++L G++S G C + G+Y++
Sbjct: 168 MFCAGFHEGGRDSCQGDSGGPHV------TEVEGTSFLTGIISWGE-ECAMKGKYGIYTK 220
Query: 391 TSYFLRWI 398
S ++ WI
Sbjct: 221 VSRYVNWI 228
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDS 126
R +L L ++ + + C + ++ C G + G+DSC GDSGGP +
Sbjct: 138 RAALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHV------T 191
Query: 127 AISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++L G++S+G E+C G+YT+++ ++ WI
Sbjct: 192 EVEGTSFLTGIISWG-EECAMKGKYGIYTKVSRYVNWI 228
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 39/163 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
YV P+C+ + + V+GWG K + ++L +YL + +R
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRAALVL--------QYLRVPLVDR-- 153
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWM 792
CL ++ T C G + G+DSC GDSGGP +
Sbjct: 154 --------ATCLRSTKFTIT-------------NNMFCAGFHEGGRDSCQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ ++L GI+S G C M G+YT+ S ++ WI
Sbjct: 191 ----TEVEGTSFLTGIISWGEE-CAMKGKYGIYTKVSRYVNWI 228
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 493 VQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI 552
+Q +K+ + + Y NDI LL+L + ++ V VCLP + + +F T
Sbjct: 65 IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLP---SASDDFAAGTTC 121
Query: 553 V-AGWGVTE--DGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDS 609
V GWG+T + + L + ++ CK + + IC G G +C GDS
Sbjct: 122 VTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDS 180
Query: 610 GGPLTWMGSFDSAILARN---YLIGLVSYG-PTCGTKSENPGVYTRMTYFLQWI 659
GGPL + +N L+G+VS+G TC T + PGVY R+T + W+
Sbjct: 181 GGPL---------VCKKNGAWTLVGIVSWGSSTCSTST--PGVYARVTALVNWV 223
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 80 VFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN---YLIG 136
+ ++ CK + + IC G G SC GDSGGPL + +N L+G
Sbjct: 147 LLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPL---------VCKKNGAWTLVG 196
Query: 137 LVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+VS+G C T PGVY R+T + W+
Sbjct: 197 IVSWGSSTC-STSTPGVYARVTALVNWV 223
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 767 KGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
K + G G SC GDSGGPL+ + A T L+GIVS G STC PGVY
Sbjct: 162 KDAMICAGASGVSSCMGDSGGPLVC-----KKNGAWT-LVGIVSWGSSTCST-STPGVYA 214
Query: 827 RTSYFLRWILATPEA 841
R + + W+ T A
Sbjct: 215 RVTALVNWVQQTLAA 229
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
M G G SC GDSGGPL + L+G+VS G ++C PGVY+R +
Sbjct: 165 MICAGASGVSSCMGDSGGPLV------CKKNGAWTLVGIVSWGSSTCST-STPGVYARVT 217
Query: 393 YFLRWI 398
+ W+
Sbjct: 218 ALVNWV 223
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 84 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVVAD--RTE 135
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L+ Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 136 CFITGWGETQGTFGAGLLMEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 194
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GDSGGPL F+ + L G+ S+G C + PGVY R++ F+ WI
Sbjct: 195 GDSGGPLV---CFEK---DKYILQGVTSWGLGC-ARPNKPGVYVRVSRFVTWI 240
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAI 128
L+ Q V ++ C RY+ L+ S+++C G G DSC GDSGGPL F+
Sbjct: 153 LMEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLV---CFE--- 205
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 206 KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 240
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 114 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLMEAQLPVIENK-VCNRYEF 171
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GDSGGPL+ F++ + L G+ S G C
Sbjct: 172 LNGRVQST---ELCAGHLAGGTDSCQGDSGGPLV---CFEKD---KYILQGVTSWGLG-C 221
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 222 ARPNKPGVYVRVSRFVTWI 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 84/237 (35%), Gaps = 63/237 (26%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------DH 263
++GG VA S PW + H C V H P S H
Sbjct: 18 VVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH 77
Query: 264 RQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC-------- 313
++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 78 QEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYVV 130
Query: 314 -----CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG-K 341
C+ + + N + Y S ++C G G
Sbjct: 131 ADRTECFITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGT 190
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GDSGGPL F+ + L G+ S G C PGVY R S F+ WI
Sbjct: 191 DSCQGDSGGPLV---CFE---KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 240
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N M +
Sbjct: 83 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYMVAD--RTE 134
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 135 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 193
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GDSGGPL D IL G+ S+G C + PGVY R++ F+ WI
Sbjct: 194 GDSGGPLVCFEK-DKYILQ-----GVTSWGLGC-ARPNKPGVYVRVSRFVTWI 239
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GDSGGPL F+
Sbjct: 156 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLV---CFE-- 204
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 205 -KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 239
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 113 ITDKVIPA-CLPSPNYMVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 170
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GDSGGPL+ F++ + L G+ S G C
Sbjct: 171 LNGRVQST---ELCAGHLAGGTDSCQGDSGGPLV---CFEKD---KYILQGVTSWGLG-C 220
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 221 ARPNKPGVYVRVSRFVTWI 239
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 85/238 (35%), Gaps = 63/238 (26%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------D 262
R++GG VA S PW + H C V H P S
Sbjct: 16 RVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 75
Query: 263 HRQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC------- 313
H++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 76 HQEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYM 128
Query: 314 ------CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG- 340
C+ + + N + Y S ++C G G
Sbjct: 129 VADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGG 188
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GDSGGPL F+ + L G+ S G C PGVY R S F+ WI
Sbjct: 189 TDSCQGDSGGPLV---CFE---KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 239
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 36/227 (15%)
Query: 441 FLTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQ 500
FL E++ T + +++ V LG N+ Q I I V++
Sbjct: 33 FLIREDFVLTAAHCSGSKIQ------VTLGAHNIKEQEKMQQI------------IPVVK 74
Query: 501 FLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG-VT 559
+ H Y NDI LL+L+ + + V P+ LP N + + VAGWG +
Sbjct: 75 IIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVK--PGDVCYVAGWGKLG 132
Query: 560 EDGRSSLELLAVQQKVFNSEECKARYQE-LDPSSQICVGG-KVGKDACKGDSGGPLTWMG 617
G+ S L V+ V ++C++ + D +++IC G K+ + + +GDSGGPL
Sbjct: 133 PMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRGDSGGPL---- 188
Query: 618 SFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ + G+VSYG G+ P +T+++ FL WI ++
Sbjct: 189 ------VCKKVAAGIVSYGQNDGS---TPRAFTKVSTFLSWIKKTMK 226
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 73 LLAVQQKVFNSEKCKARYQK-LDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
L V+ V +KC++ + D +++IC G K+ + S GDSGGPL
Sbjct: 141 LQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRGDSGGPLV----------C 190
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ G+VSYG D G T P +T+++ FL WI ++
Sbjct: 191 KKVAAGIVSYGQND-GST--PRAFTKVSTFLSWIKKTMK 226
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
++C G K+ + S GDSGGPL+ + GIVS G + P +T+
Sbjct: 167 EICAGDPKIKRASFRGDSGGPLV----------CKKVAAGIVSYGQNDGS---TPRAFTK 213
Query: 828 TSYFLRWILAT 838
S FL WI T
Sbjct: 214 VSTFLSWIKKT 224
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 493 VQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI 552
+Q +K+ + + Y NDI LL+L + ++ V VCLP + + +F T
Sbjct: 80 IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLP---SASDDFAAGTTC 136
Query: 553 V-AGWGVTE--DGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDS 609
V GWG+T + + L + ++ CK + + IC G G +C GDS
Sbjct: 137 VTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDS 195
Query: 610 GGPLTWMGSFDSAILARN---YLIGLVSYG-PTCGTKSENPGVYTRMTYFLQWI 659
GGPL + +N L+G+VS+G TC T + PGVY R+T + W+
Sbjct: 196 GGPL---------VCKKNGAWTLVGIVSWGSSTCSTST--PGVYARVTALVNWV 238
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 80 VFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN---YLIG 136
+ ++ CK + + IC G G SC GDSGGPL + +N L+G
Sbjct: 162 LLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPL---------VCKKNGAWTLVG 211
Query: 137 LVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+VS+G C T PGVY R+T + W+
Sbjct: 212 IVSWGSSTC-STSTPGVYARVTALVNWV 238
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 767 KGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
K + G G SC GDSGGPL+ + A T L+GIVS G STC PGVY
Sbjct: 177 KDAMICAGASGVSSCMGDSGGPLVC-----KKNGAWT-LVGIVSWGSSTCST-STPGVYA 229
Query: 827 RTSYFLRWILATPEA 841
R + + W+ T A
Sbjct: 230 RVTALVNWVQQTLAA 244
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
M G G SC GDSGGPL + L+G+VS G ++C PGVY+R +
Sbjct: 180 MICAGASGVSSCMGDSGGPLV------CKKNGAWTLVGIVSWGSSTCST-STPGVYARVT 232
Query: 393 YFLRWI 398
+ W+
Sbjct: 233 ALVNWV 238
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSRIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKDSC GDSGGP+ G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q I V + + H Y NDI LL+LE+ +W V P+ LP A + + V
Sbjct: 67 QFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVK--PGQLCSV 124
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ-ELDPSSQICVGG-KVGKDACKGDSGG 611
AGWG + L V V +C+ + +++ICVG K + KGDSGG
Sbjct: 125 AGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKGDSGG 184
Query: 612 PLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
PL + ++ G++SYG GT PGVY ++++FL WI
Sbjct: 185 PL----------VCKDVAQGILSYGNKKGTP---PGVYIKVSHFLPWI 219
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 14/70 (20%)
Query: 96 SSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
+++ICVG K + GDSGGPL ++ G++SYG + K PGVY
Sbjct: 163 ATEICVGDPKKTQTGFKGDSGGPLV----------CKDVAQGILSYGNK---KGTPPGVY 209
Query: 155 TRMTYFLQWI 164
++++FL WI
Sbjct: 210 IKVSHFLPWI 219
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
++CVG K + GDSGGPL+ + GI+S G PGVY +
Sbjct: 165 EICVGDPKKTQTGFKGDSGGPLV----------CKDVAQGILSYGNKKGTP---PGVYIK 211
Query: 828 TSYFLRWILAT 838
S+FL WI T
Sbjct: 212 VSHFLPWIKRT 222
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSAIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKDSC GDSGGP+ G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q + + + H N+ NDI L++L +
Sbjct: 48 VRLGEHNINV------LEGNE------QFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVK 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELL-AVQQKVFNSEECKAR 584
N V V LP A +++GWG T G + +LL + + +C+A
Sbjct: 96 LNARVATVALPSSCAPA----GTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y + +CVG + GK +C+GDSGGP+ G L G+VS+G C
Sbjct: 152 YPGKITDNMVCVGFLEGGKGSCQGDSGGPVVCNGE----------LQGIVSWGYGCALP- 200
Query: 644 ENPGVYTRMTYFLQWILDHL 663
+NP VYT++ ++ WI D +
Sbjct: 201 DNPDVYTKVCNYVDWIQDTI 220
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 36 IKIKTRARSPFIPNIRFKSPIHLLA-----LFSTEDKRPSLELLAVQQKVFNSEKCKARY 90
+K+ R + +P+ + L S+ P L L + + C+A Y
Sbjct: 94 VKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDL-LQCLDAPLLPQADCEASY 152
Query: 91 QKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTE 149
+ +CVG + GK SC GDSGGP+ G L G+VS+G C +
Sbjct: 153 PGKITDNMVCVGFLEGGKGSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPD 201
Query: 150 NPGVYTRMTYFLQWILDHL 168
NP VYT++ ++ WI D +
Sbjct: 202 NPDVYTKVCNYVDWIQDTI 220
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 89/242 (36%), Gaps = 72/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARI--AYSRTPHCATNPEQISS----------VRLGEHDANSDPD 258
I+GGY + S+P+ + Y N + + S VRLGEH+ N
Sbjct: 1 IVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 60
Query: 259 CSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------------ 306
Q + K+I H +F + NDI L++L P +LN
Sbjct: 61 NE----------QFVNAAKIIKHPNFD-RKTLNNDIMLIKLSSPVKLNARVATVALPSSC 109
Query: 307 ---GTH------------------LMSC--CYYLAYADNGISI--DYNSGQMCVGG-NVG 340
GT L+ C L AD S +CVG G
Sbjct: 110 APAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
K SC GDSGGP+ G L G+VS G C + + P VY++ ++ WI D
Sbjct: 170 KGSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPDVYTKVCNYVDWIQD 218
Query: 401 HL 402
+
Sbjct: 219 TI 220
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GK SC GDSGGP++ G L GIVS G C + P VYT+
Sbjct: 161 VCVGFLEGGKGSCQGDSGGPVVCNGE----------LQGIVSWG-YGCALPDNPDVYTKV 209
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 210 CNYVDWIQDTIAA 222
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GDSGGP+ G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 20/183 (10%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEK-SPEW---NGYVHPVCLPYGNAMTRNFENE 549
Q KV +++ H+ + D NDIALL+L+ SP+ + V +CLP N ++
Sbjct: 88 QTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRAICLPEANLQLPDWTEC 147
Query: 550 NTIVAGWGVTEDGRSSLELLAVQQKVFNSEEC--KARYQELDPSSQICVGGKVG------ 601
G + S +L +++ S C K + + ++ +C G
Sbjct: 148 ELSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPN 207
Query: 602 -KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWIL 660
DAC+GDSGGPL M D+ + L+G++S+G CG K + PGVYT++T +L WI
Sbjct: 208 VHDACQGDSGGPLVCMN--DNHMT----LLGIISWGVGCGEK-DVPGVYTKVTNYLGWIR 260
Query: 661 DHL 663
D++
Sbjct: 261 DNM 263
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 16/99 (16%)
Query: 79 KVFNSEKC--KARYQKLDPSSQICVGGKVG-------KDSCYGDSGGPLTWMGSFDSAIS 129
+++ S +C K + K ++ +C G D+C GDSGGPL M D+ ++
Sbjct: 172 RLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVCMN--DNHMT 229
Query: 130 ARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L+G++S+G CG+ + PGVYT++T +L WI D++
Sbjct: 230 ----LLGIISWGV-GCGEKDVPGVYTKVTNYLGWIRDNM 263
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 7/61 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
D+C GDSGGPL M D+ ++ L+G++S G CG ++PGVY++ + +L WI D+
Sbjct: 210 DACQGDSGGPLVCMN--DNHMT----LLGIISWG-VGCGEKDVPGVYTKVTNYLGWIRDN 262
Query: 402 L 402
+
Sbjct: 263 M 263
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGPL+ M D ++ LLGI+S G CG +PGVYT+ + +L WI
Sbjct: 210 DACQGDSGGPLVCMN--DNHMT----LLGIISWGVG-CGEKDVPGVYTKVTNYLGWI 259
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GDSGGP+ G L G+VS+G E C + PGVYT++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-EGCAQKNKPGVYTKVCNYVSWI 216
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GDSGGP++ G L GIVS G C PGVYT+ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ G L G+VS G C PGVY++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGVYTKVCNYVSWI 216
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLE----KSPEWNGYVHPVCLPYGNAMTRNFENE 549
Q +V +++ H+ + D NDIALL+L+ + + + V VCLP + ++
Sbjct: 75 QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC 134
Query: 550 NTIVAGWGVTEDGRS--SLELLAVQQKVFNSEECKARY--QELDPSSQICVGGKVG---- 601
++G+G E S L +++ S C +++ + +C G
Sbjct: 135 E--LSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQ 192
Query: 602 ---KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQW 658
DAC+GDSGGPL + R L+G++S+G CG K + PGVYT++T +L W
Sbjct: 193 ANLHDACQGDSGGPLVCLND------GRMTLVGIISWGLGCGQK-DVPGVYTKVTNYLDW 245
Query: 659 ILDHLE 664
I D++
Sbjct: 246 IRDNMR 251
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 29/111 (26%)
Query: 81 FNSEKCKARYQKLDPSSQ---------------ICVGGKVG-------KDSCYGDSGGPL 118
F SE+ K + +L PSS+ +C G D+C GDSGGPL
Sbjct: 148 FYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPL 207
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ R L+G++S+G CG+ + PGVYT++T +L WI D++
Sbjct: 208 VCLND------GRMTLVGIISWG-LGCGQKDVPGVYTKVTNYLDWIRDNMR 251
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 281 HEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVG 340
HE S + R A +RL R HL++ DN + +G GG
Sbjct: 142 HEALSPFYSERLKEAHVRLYPSSRCTSQHLLN----RTVTDNMLC----AGDTRSGGPQA 193
Query: 341 K--DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
D+C GDSGGPL + R L+G++S G CG ++PGVY++ + +L WI
Sbjct: 194 NLHDACQGDSGGPLVCLND------GRMTLVGIISWG-LGCGQKDVPGVYTKVTNYLDWI 246
Query: 399 LDHL 402
D++
Sbjct: 247 RDNM 250
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGPL+ + R L+GI+S G CG +PGVYT+ + +L WI
Sbjct: 197 DACQGDSGGPLVCLND------GRMTLVGIISWGLG-CGQKDVPGVYTKVTNYLDWI 246
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSYIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKDSC GDSGGP+ G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 87 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVVAD--RTE 138
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 139 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 197
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GDSGGPL F+ + L G+ S+G C + PGVY R++ F+ WI
Sbjct: 198 GDSGGPLV---CFEK---DKYILQGVTSWGLGC-ARPNKPGVYVRVSRFVTWI 243
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GDSGGPL F+
Sbjct: 160 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLV---CFE-- 208
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 209 -KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 243
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 117 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 174
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GDSGGPL+ F++ + L G+ S G C
Sbjct: 175 LNGRVQST---ELCAGHLAGGTDSCQGDSGGPLV---CFEKD---KYILQGVTSWGLG-C 224
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 225 ARPNKPGVYVRVSRFVTWI 243
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 85/238 (35%), Gaps = 63/238 (26%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------D 262
R++GG VA S PW + H C V H P S
Sbjct: 20 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 79
Query: 263 HRQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC------- 313
H++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 80 HQEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYV 132
Query: 314 ------CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG- 340
C+ + + N + Y S ++C G G
Sbjct: 133 VADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGG 192
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GDSGGPL F+ + L G+ S G C PGVY R S F+ WI
Sbjct: 193 TDSCQGDSGGPLV---CFE---KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 243
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG+YT++ ++ WI
Sbjct: 202 K-PGIYTKVCNYVSWI 216
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GDSGGP+ G L G+VS+G C + PG+YT++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGIYTKVCNYVSWI 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GDSGGP++ G L GIVS G S C PG+YT+ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGIYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ G L G+VS G + C PG+Y++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGIYTKVCNYVSWI 216
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG+YT++ ++ WI
Sbjct: 202 K-PGIYTKVCNYVSWI 216
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GDSGGP+ G L G+VS+G C + PG+YT++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGIYTKVCNYVSWI 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GDSGGP++ G L GIVS G S C PG+YT+ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGIYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ G L G+VS G + C PG+Y++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGIYTKVCNYVSWI 216
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 84 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVVAD--RTE 135
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 136 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 194
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GDSGGPL D IL G+ S+G C + PGVY R++ F+ WI
Sbjct: 195 GDSGGPLVCFEK-DKYILQ-----GVTSWGLGC-ARPNKPGVYVRVSRFVTWI 240
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GDSGGPL F+
Sbjct: 157 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLV---CFE-- 205
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 206 -KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 240
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 114 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 171
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GDSGGPL+ F++ + L G+ S G C
Sbjct: 172 LNGRVQST---ELCAGHLAGGTDSCQGDSGGPLV---CFEKD---KYILQGVTSWGLG-C 221
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 222 ARPNKPGVYVRVSRFVTWI 240
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 82/238 (34%), Gaps = 63/238 (26%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------D 262
R++GG VA S PW + H C V H P S
Sbjct: 17 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 76
Query: 263 HRQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC------- 313
H++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 77 HQEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYV 129
Query: 314 ------CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG- 340
C+ + + N + Y S ++C G G
Sbjct: 130 VADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGG 189
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GDSGGPL Y++ V+ C PGVY R S F+ WI
Sbjct: 190 TDSCQGDSGGPLV-------CFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 24/186 (12%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLE----KSPEWNGYVHPVCLPYGNAMTRNFENE 549
Q +V +++ H+ + D NDIALL+L+ + + + V VCLP + ++
Sbjct: 88 QKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTEC 147
Query: 550 NTIVAGWGVTE--DGRSSLELLAVQQKVFNSEECKARY--QELDPSSQICVGGKVG---- 601
++G+G E S L +++ S C +++ + +C G
Sbjct: 148 E--LSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQ 205
Query: 602 ---KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQW 658
DAC+GDSGGPL + R L+G++S+G CG K + PGVYT++T +L W
Sbjct: 206 ANLHDACQGDSGGPLVCLND------GRMTLVGIISWGLGCGQK-DVPGVYTKVTNYLDW 258
Query: 659 ILDHLE 664
I D++
Sbjct: 259 IRDNMR 264
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 29/111 (26%)
Query: 81 FNSEKCKARYQKLDPSSQ---------------ICVGGKVG-------KDSCYGDSGGPL 118
F SE+ K + +L PSS+ +C G D+C GDSGGPL
Sbjct: 161 FYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPL 220
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ R L+G++S+G CG+ + PGVYT++T +L WI D++
Sbjct: 221 VCLND------GRMTLVGIISWG-LGCGQKDVPGVYTKVTNYLDWIRDNMR 264
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 281 HEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVG 340
HE S + R A +RL R HL++ DN + +G GG
Sbjct: 155 HEALSPFYSERLKEAHVRLYPSSRCTSQHLLN----RTVTDNMLC----AGDTRSGGPQA 206
Query: 341 K--DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
D+C GDSGGPL + R L+G++S G CG ++PGVY++ + +L WI
Sbjct: 207 NLHDACQGDSGGPLVCLND------GRMTLVGIISWG-LGCGQKDVPGVYTKVTNYLDWI 259
Query: 399 LDHL 402
D++
Sbjct: 260 RDNM 263
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGPL+ + R L+GI+S G CG +PGVYT+ + +L WI
Sbjct: 210 DACQGDSGGPLVCLND------GRMTLVGIISWGLG-CGQKDVPGVYTKVTNYLDWI 259
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ CVG + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG YT++ ++ WI
Sbjct: 202 K-PGFYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 96 SSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
S+ CVG + GKD+C GDSGGP+ G L G+VS+G E C + PG Y
Sbjct: 158 SNMFCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWG-EGCAQKNKPGFY 206
Query: 155 TRMTYFLQWI 164
T++ ++ WI
Sbjct: 207 TKVCNYVSWI 216
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKD+C GDSGGP++ G L GIVS G C PG YT+
Sbjct: 161 FCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGFYTKV 209
Query: 829 SYFLRWILAT 838
++ WI T
Sbjct: 210 CNYVSWIKQT 219
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
S CVG GKD+C GDSGGP+ G L G+VS G C PG Y
Sbjct: 158 SNMFCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGFY 206
Query: 389 SRTSYFLRWI 398
++ ++ WI
Sbjct: 207 TKVCNYVSWI 216
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG+YT++ ++ WI
Sbjct: 202 K-PGIYTKVCNYVSWI 216
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GDSGGP+ G L G+VS+G E C + PG+YT++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-EGCAQKNKPGIYTKVCNYVSWI 216
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GDSGGP++ G L GIVS G C PG+YT+ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGIYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ G L G+VS G C PG+Y++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGIYTKVCNYVSWI 216
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGEGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKDSC GDSGGP+ G L G+VS+G E C + PGVYT++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-EGCAQKNKPGVYTKVCNYVSWI 216
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGVYTKVCNYVSWI 216
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 500 QFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT 559
+ ++H + ND+AL+++ E+ + P+ LP G + FEN V+GWG
Sbjct: 73 RIISHSMFNPDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELNNKFENIWATVSGWG-- 129
Query: 560 EDGRSSLELLAVQQKVFNSEECKARYQE-LDPSSQICVGGKVGKDACKGDSGGPLTWMGS 618
+ ++ L V +++ C Y + S IC GK C GDSGGP
Sbjct: 130 QSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPF----- 184
Query: 619 FDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ +N LIG+VS+ G +S P ++R+T ++ WI
Sbjct: 185 ---VLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 80 VFNSEKCKARYQ-KLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLV 138
V ++++C Y + S IC GK C+GDSGGP +S +N LIG+V
Sbjct: 145 VIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPF--------VLSDKNLLIGVV 196
Query: 139 SYGPEDCGKTENPGVYTRMTYFLQWI 164
S+ ++ P ++R+T ++ WI
Sbjct: 197 SFVSGAGCESGKPVGFSRVTSYMDWI 222
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 44/172 (25%)
Query: 667 VNIPEVHY---VQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRY 723
+ IP V Y +QP+ LP G+ L FE V+GWG + + IL LV D
Sbjct: 92 IKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWG--QSNTDTVILQYTYNLVIDND 149
Query: 724 LCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNG 783
C Y GI +++ +C GK C G
Sbjct: 150 RCAQEYPP-GIIVEST------------------------------ICGDTSDGKSPCFG 178
Query: 784 DSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSGGP + +S + L+G+VS P ++R + ++ WI
Sbjct: 179 DSGGPFV--------LSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 46/159 (28%)
Query: 277 KVISHEHFSGEPNMRNDIALLRLE--------RPPRL----------------------- 305
++ISH F+ + + ND+AL+++ +P RL
Sbjct: 73 RIISHSMFNPDTYL-NDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQS 131
Query: 306 -NGTHLMSCCYYLAYADNGISIDYNSG-----QMCVGGNVGKDSCNGDSGGPLTWMGSFD 359
T ++ Y L ++ + +Y G +C + GK C GDSGGP
Sbjct: 132 NTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPF------- 184
Query: 360 SAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
+S + LIG+VS + P +SR + ++ WI
Sbjct: 185 -VLSDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y + NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSWIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKDSC GDSGGP+ G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GD+GGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GD+GGP+ G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GD+GGP++ G L GIVS G S C PGVYT+ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GD+GGP+ G L G+VS G + C PGVY++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGVYTKVCNYVSWI 216
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG YT++ ++ WI
Sbjct: 202 K-PGFYTKLCNYVSWI 216
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GDSGGP+ G L G+VS+G C + PG YT++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKLCNYVSWI 216
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GDSGGP++ G L GIVS G S C PG YT+ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKLCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ G L G+VS G + C PG Y++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKLCNYVSWI 216
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GD+GGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK----------LQGIVSWGEGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PGVYT++ ++ WI
Sbjct: 202 K-PGVYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GD+GGP+ G L G+VS+G E C + PGVYT++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-EGCAQKNKPGVYTKVCNYVSWI 216
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GD+GGP++ G L GIVS G C PGVYT+ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGVYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GD+GGP+ G L G+VS G C PGVY++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGVYTKVCNYVSWI 216
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q I V + + H Y N+I LL+LE+ +W V P+ LP A + + V
Sbjct: 67 QFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSKAQVK--PGQLCSV 124
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ-ELDPSSQICVGG-KVGKDACKGDSGG 611
AGWG + L V V +C+ + +++ICVG K + KGDSGG
Sbjct: 125 AGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKGDSGG 184
Query: 612 PLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
PL + ++ G++SYG GT PGVY ++++FL WI
Sbjct: 185 PL----------VCKDVAQGILSYGNKKGTP---PGVYIKVSHFLPWI 219
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 14/70 (20%)
Query: 96 SSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
+++ICVG K + GDSGGPL ++ G++SYG + K PGVY
Sbjct: 163 ATEICVGDPKKTQTGFKGDSGGPLV----------CKDVAQGILSYGNK---KGTPPGVY 209
Query: 155 TRMTYFLQWI 164
++++FL WI
Sbjct: 210 IKVSHFLPWI 219
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
++CVG K + GDSGGPL+ + GI+S G PGVY +
Sbjct: 165 EICVGDPKKTQTGFKGDSGGPLV----------CKDVAQGILSYGNKKGTP---PGVYIK 211
Query: 828 TSYFLRWILAT 838
S+FL WI T
Sbjct: 212 VSHFLPWIKRT 222
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 84 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVVAD--RTE 135
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 136 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 194
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GD+GGPL D IL G+ S+G C + PGVY R++ F+ WI
Sbjct: 195 GDAGGPLVCFEK-DKYILQ-----GVTSWGLGC-ARPNKPGVYVRVSRFVTWI 240
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GD+GGPL F+
Sbjct: 157 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLV---CFEKD 207
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 208 ---KYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 240
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 114 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 171
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GD+GGPL+ F++ + L G+ S G C
Sbjct: 172 LNGRVQST---ELCAGHLAGGTDSCQGDAGGPLV---CFEKD---KYILQGVTSWGLG-C 221
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 222 ARPNKPGVYVRVSRFVTWI 240
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 85/238 (35%), Gaps = 63/238 (26%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------D 262
R++GG VA S PW + H C V H P S
Sbjct: 17 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 76
Query: 263 HRQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC------- 313
H++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 77 HQEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYV 129
Query: 314 ------CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG- 340
C+ + + N + Y S ++C G G
Sbjct: 130 VADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGG 189
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GD+GGPL F+ + L G+ S G C PGVY R S F+ WI
Sbjct: 190 TDSCQGDAGGPLV---CFE---KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 240
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N T+ + N HEV + H + DIA+
Sbjct: 44 LHQAKRFTVRVGDRN--TEQEEGNEMAHEV----------EMTVKHSRFVKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT-EDGRSSLELLAVQQKVF 576
LRL+ + V P CLP + + T IV+G+G T E GR S L ++
Sbjct: 92 LRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
+ CK + C G +DAC+GDSGGP + ++ G+VS+
Sbjct: 152 DRSTCKLSSSFTITPNMFCAGYDTQPEDACQGDSGGPHV------TRFKDTYFVTGIVSW 205
Query: 636 GPTCGTKSENPGVYTRMTYFLQWI 659
G C K + GVYT+++ FL+WI
Sbjct: 206 GEGCARKGKF-GVYTKVSNFLKWI 228
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGS 123
E R S L ++ + CK + C G +D+C GDSGGP
Sbjct: 135 EKGRLSSTLKMLEVPYVDRSTCKLSSSFTITPNMFCAGYDTQPEDACQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ ++ G+VS+G E C + GVYT+++ FL+WI
Sbjct: 191 --TRFKDTYFVTGIVSWG-EGCARKGKFGVYTKVSNFLKWI 228
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 61/163 (37%), Gaps = 40/163 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDT-IVAGWGLTEKKIPSHILLGVNQLVY-DRYLCTAIYERN 732
V P CLP D + + T IV+G+G T +K L + ++ Y DR C +
Sbjct: 104 VAPACLPEKDWAEATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTC-----KL 158
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
S C YD +D+C GDSGGP +
Sbjct: 159 SSSFTITPNMFCAGYDTQ--------------------------PEDACQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
++ GIVS G C GVYT+ S FL+WI
Sbjct: 191 ----TRFKDTYFVTGIVSWGEG-CARKGKFGVYTKVSNFLKWI 228
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
+D+C GDSGGP + ++ G+VS G C GVY++ S FL+WI
Sbjct: 178 EDACQGDSGGPHV------TRFKDTYFVTGIVSWGEG-CARKGKFGVYTKVSNFLKWI 228
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 87 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVVAD--RTE 138
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 139 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 197
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GD+GGPL F+ + L G+ S+G C + PGVY R++ F+ WI
Sbjct: 198 GDAGGPLV---CFEK---DKYILQGVTSWGLGC-ARPNKPGVYVRVSRFVTWI 243
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GD+GGPL F+
Sbjct: 160 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLV---CFEKD 210
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 211 ---KYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 243
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 117 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 174
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GD+GGPL+ F++ + L G+ S G C
Sbjct: 175 LNGRVQST---ELCAGHLAGGTDSCQGDAGGPLV---CFEKD---KYILQGVTSWGLG-C 224
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 225 ARPNKPGVYVRVSRFVTWI 243
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 85/238 (35%), Gaps = 63/238 (26%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------D 262
R++GG VA S PW + H C V H P S
Sbjct: 20 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 79
Query: 263 HRQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC------- 313
H++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 80 HQEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYV 132
Query: 314 ------CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG- 340
C+ + + N + Y S ++C G G
Sbjct: 133 VADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGG 192
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GD+GGPL F+ + L G+ S G C PGVY R S F+ WI
Sbjct: 193 TDSCQGDAGGPLV---CFE---KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 243
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 85 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVVAD--RTE 136
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 137 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 195
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GD+GGPL F+ + L G+ S+G C + PGVY R++ F+ WI
Sbjct: 196 GDAGGPLV---CFEK---DKYILQGVTSWGLGC-ARPNKPGVYVRVSRFVTWI 241
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GD+GGPL F+
Sbjct: 158 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLV---CFEKD 208
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 209 ---KYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 241
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 115 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 172
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GD+GGPL+ F++ + L G+ S G C
Sbjct: 173 LNGRVQST---ELCAGHLAGGTDSCQGDAGGPLV---CFEKD---KYILQGVTSWGLG-C 222
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 223 ARPNKPGVYVRVSRFVTWI 241
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 85/238 (35%), Gaps = 63/238 (26%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------D 262
R++GG VA S PW + H C V H P S
Sbjct: 18 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 77
Query: 263 HRQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC------- 313
H++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 78 HQEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYV 130
Query: 314 ------CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG- 340
C+ + + N + Y S ++C G G
Sbjct: 131 VADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGG 190
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GD+GGPL F+ + L G+ S G C PGVY R S F+ WI
Sbjct: 191 TDSCQGDAGGPLV---CFE---KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 241
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 86 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVVAD--RTE 137
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 138 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 196
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GD+GGPL F+ + L G+ S+G C + PGVY R++ F+ WI
Sbjct: 197 GDAGGPLV---CFEK---DKYILQGVTSWGLGC-ARPNKPGVYVRVSRFVTWI 242
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GD+GGPL F+
Sbjct: 159 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLV---CFEKD 209
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ L G+ S+G C + PGVY R++ F+ WI
Sbjct: 210 ---KYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 242
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 116 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 173
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GD+GGPL+ F++ + L G+ S G C
Sbjct: 174 LNGRVQST---ELCAGHLAGGTDSCQGDAGGPLV---CFEKD---KYILQGVTSWGLG-C 223
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 224 ARPNKPGVYVRVSRFVTWI 242
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 85/238 (35%), Gaps = 63/238 (26%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPH-CATNPEQISSVRLGEHDANSDPDCSP------D 262
R++GG VA S PW + H C V H P S
Sbjct: 19 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 78
Query: 263 HRQC--APPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC------- 313
H++ P VQ+I V ++ EP R DIALL+L P + + +C
Sbjct: 79 HQEVNLEPHVQEIEVSRLFL------EPT-RKDIALLKLSSPAVITDKVIPACLPSPNYV 131
Query: 314 ------CYYLAYAD-------------------NGISIDY-------NSGQMCVGGNVG- 340
C+ + + N + Y S ++C G G
Sbjct: 132 VADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGG 191
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
DSC GD+GGPL F+ + L G+ S G C PGVY R S F+ WI
Sbjct: 192 TDSCQGDAGGPLV---CFE---KDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 242
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG YT++ ++ WI
Sbjct: 202 K-PGFYTKVCNYVSWI 216
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GDSGGP+ G L G+VS+G C + PG YT++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWI 216
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GDSGGP++ G L GIVS G S C PG YT+ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGP+ G L G+VS G + C PG Y++ ++ WI
Sbjct: 169 GKDACQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWI 216
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + T+ DIALL+L V P CLP N + +
Sbjct: 628 PHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPNYVV--ADRTE 679
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACK 606
+ GWG T+ + L Q V ++ C RY+ L+ S+++C G G D+C+
Sbjct: 680 CFITGWGETQGTFGAGLLKEAQLPVIENKVCN-RYEFLNGRVQSTELCAGHLAGGTDSCQ 738
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GDSGGPL D IL G+ S+G C + PGVY R++ F+ WI
Sbjct: 739 GDSGGPLVCFEK-DKYILQ-----GVTSWGLGCA-RPNKPGVYVRVSRFVTWI 784
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 702 LTEKKIPSHILLGVNQLVYDRYLC--TAIYERNGI--SIDTNKGQLCLVYDRYLCTAIYE 757
+T+K IP+ L N +V DR C T E G + + QL ++ ++ +C
Sbjct: 658 ITDKVIPA-CLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENK-VCNRYEF 715
Query: 758 RNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTC 816
NG T +LC G G DSC GDSGGPL+ F++ + L G+ S G C
Sbjct: 716 LNGRVQST---ELCAGHLAGGTDSCQGDSGGPLV---CFEKD---KYILQGVTSWG-LGC 765
Query: 817 GMLRIPGVYTRTSYFLRWI 835
PGVY R S F+ WI
Sbjct: 766 ARPNKPGVYVRVSRFVTWI 784
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
+L ++ KV N RY+ L+ S+++C G G DSC GDSGGPL
Sbjct: 701 QLPVIENKVCN------RYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLV-------C 747
Query: 128 ISARNYLI-GLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
Y++ G+ S+G C + PGVY R++ F+ WI
Sbjct: 748 FEKDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWI 784
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 85/249 (34%), Gaps = 85/249 (34%)
Query: 210 RIIGGYVAKLGSIPWIARIAYS-----------------RTPHCATNPEQISSVR--LGE 250
R++GG VA S PW + HC + SS + LG
Sbjct: 561 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 620
Query: 251 H-DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTH 309
H + N +P VQ+I V ++ EP R DIALL+L P +
Sbjct: 621 HQEVNLEPH-----------VQEIEVSRLFL------EP-TRKDIALLKLSSPAVITDKV 662
Query: 310 LMSC-------------CYYLAYAD-------------------NGISIDY-------NS 330
+ +C C+ + + N + Y S
Sbjct: 663 IPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQS 722
Query: 331 GQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
++C G G DSC GDSGGPL Y++ V+ C PGVY
Sbjct: 723 TELCAGHLAGGTDSCQGDSGGPLV-------CFEKDKYILQGVTSWGLGCARPNKPGVYV 775
Query: 390 RTSYFLRWI 398
R S F+ WI
Sbjct: 776 RVSRFVTWI 784
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GD+GGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG YT++ ++ WI
Sbjct: 202 K-PGFYTKVCNYVSWI 216
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GD+GGP+ G L G+VS+G C + PG YT++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWI 216
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GD+GGP++ G L GIVS G S C PG YT+ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GD+GGP+ G L G+VS G + C PG Y++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWI 216
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P Q ++ + H Y ND+ L++L++S + + + + N +
Sbjct: 62 PGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGN----S 117
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICV-GGKVGKDACKGDS 609
+V+GWG+ +GR L V V + E C Y L S C GG+ KD+C GDS
Sbjct: 118 CLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDS 177
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGPL + YL GLVS+G + PGVYT + F +WI
Sbjct: 178 GGPL----------ICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 773 GGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFL 832
GG+ KDSCNGDSGGPL+ G YL G+VS G + CG + +PGVYT F
Sbjct: 165 GGQDQKDSCNGDSGGPLICNG----------YLQGLVSFGKAPCGQVGVPGVYTNLCKFT 214
Query: 833 RWILATPEA 841
WI T +A
Sbjct: 215 EWIEKTVQA 223
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 86 CKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPED 144
C Y L S C GG + KDSC GDSGGPL G YL GLVS+G
Sbjct: 148 CSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLICNG----------YLQGLVSFGKAP 197
Query: 145 CGKTENPGVYTRMTYFLQWI 164
CG+ PGVYT + F +WI
Sbjct: 198 CGQVGVPGVYTNLCKFTEWI 217
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 328 YNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPG 386
Y+ C GG KDSCNGDSGGPL G YL GLVS G A CG +PG
Sbjct: 156 YHPSMFCAGGGQDQKDSCNGDSGGPLICNG----------YLQGLVSFGKAPCGQVGVPG 205
Query: 387 VYSRTSYFLRWI 398
VY+ F WI
Sbjct: 206 VYTNLCKFTEWI 217
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKD+C+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGK----------LQGIVSWGSGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG YT++ ++ WI
Sbjct: 202 K-PGFYTKVCNYVSWI 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKDSC GDSGGP+ G L G+VS+G C + PG YT++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWI 216
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKDSC GDSGGP++ G L GIVS G S C PG YT+ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G + C PG Y++ ++ WI
Sbjct: 169 GKDSCQGDSGGPVVCSGK----------LQGIVSWG-SGCAQKNKPGFYTKVCNYVSWI 216
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
N V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LNSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ C G + GKDAC+GD+GGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCAGYLEGGKDACQGDAGGPVVCSGK----------LQGIVSWGEGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG YT++ ++ WI
Sbjct: 202 K-PGFYTKVCNYVSWI 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GKD+C GD+GGP+ G L G+VS+G E C + PG YT++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWG-EGCAQKNKPGFYTKVCNYVSWI 216
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
GKD+C GD+GGP++ G L GIVS G C PG YT+ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGFYTKVCNYVSWIK 217
Query: 837 AT 838
T
Sbjct: 218 QT 219
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GD+GGP+ G L G+VS G C PG Y++ ++ WI
Sbjct: 169 GKDACQGDAGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGFYTKVCNYVSWI 216
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 34/184 (18%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q + V + + H + + DIALL LE+ + + +VH V LP A V
Sbjct: 70 QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLP--PASETFPPGMPCWV 127
Query: 554 AGWG-VTEDGR--SSLELLAVQQKVFNSEECKARYQ---------ELDPSSQICVGGKVG 601
GWG V D R L V+ + + C A+Y + +C G
Sbjct: 128 TGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLC-AGNTR 186
Query: 602 KDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+D+C+GDSGGPL TW+ + G+VS+G C + PG+YTR+TY+
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQA------------GVVSWGEGCA-QPNRPGIYTRVTYY 233
Query: 656 LQWI 659
L WI
Sbjct: 234 LDWI 237
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQ---------KLDPSSQICVGGKVGKDSCYGDSG 115
E P L V+ + + C A+Y ++ +C G +DSC GDSG
Sbjct: 137 ERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLC-AGNTRRDSCQGDSG 195
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GPL ++ G+VS+G E C + PG+YTR+TY+L WI
Sbjct: 196 GPLV------CKVNGTWLQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 58/147 (39%), Gaps = 34/147 (23%)
Query: 692 GKDTIVAGWGLT---EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYD 748
G V GWG E+ P L V + + ++C A Y + D + +V D
Sbjct: 122 GMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR----IVRD 177
Query: 749 RYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGI 808
LC G +DSC GDSGGPL+ ++ G+
Sbjct: 178 DMLC--------------------AGNTRRDSCQGDSGGPLV------CKVNGTWLQAGV 211
Query: 809 VSLGPSTCGMLRIPGVYTRTSYFLRWI 835
VS G C PG+YTR +Y+L WI
Sbjct: 212 VSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 309 HLMSCCYYL-AYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTY 367
H+ Y+L AY + + I + M GN +DSC GDSGGPL ++
Sbjct: 156 HICDAKYHLGAYTGDDVRIVRDD--MLCAGNTRRDSCQGDSGGPLV------CKVNGTWL 207
Query: 368 LIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+VS G C PG+Y+R +Y+L WI
Sbjct: 208 QAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTI 552
Q + V + + H + + DIALL LE+ + + +VH V LP + F
Sbjct: 70 QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLP---PASETFPPGMPCW 126
Query: 553 VAGWG-VTEDGR--SSLELLAVQQKVFNSEECKARYQ---------ELDPSSQICVGGKV 600
V GWG V D R L V+ + + C A+Y + +C G
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLC-AGNT 185
Query: 601 GKDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTY 654
+D+C+GDSGGPL TW+ + G+VS+G C + PG+YTR+TY
Sbjct: 186 RRDSCQGDSGGPLVCKVNGTWLQA------------GVVSWGEGCA-QPNRPGIYTRVTY 232
Query: 655 FLQWI 659
+L WI
Sbjct: 233 YLDWI 237
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQ---------KLDPSSQICVGGKVGKDSCYGDSG 115
E P L V+ + + C A+Y ++ +C G +DSC GDSG
Sbjct: 137 ERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLC-AGNTRRDSCQGDSG 195
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GPL ++ G+VS+G E C + PG+YTR+TY+L WI
Sbjct: 196 GPLV------CKVNGTWLQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 58/147 (39%), Gaps = 34/147 (23%)
Query: 692 GKDTIVAGWGLT---EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYD 748
G V GWG E+ P L V + + ++C A Y + D + +V D
Sbjct: 122 GMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR----IVRD 177
Query: 749 RYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGI 808
LC G +DSC GDSGGPL+ ++ G+
Sbjct: 178 DMLC--------------------AGNTRRDSCQGDSGGPLV------CKVNGTWLQAGV 211
Query: 809 VSLGPSTCGMLRIPGVYTRTSYFLRWI 835
VS G C PG+YTR +Y+L WI
Sbjct: 212 VSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 309 HLMSCCYYL-AYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTY 367
H+ Y+L AY + + I + M GN +DSC GDSGGPL ++
Sbjct: 156 HICDAKYHLGAYTGDDVRIVRDD--MLCAGNTRRDSCQGDSGGPLV------CKVNGTWL 207
Query: 368 LIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+VS G C PG+Y+R +Y+L WI
Sbjct: 208 QAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTI 552
Q + V + + H + + DIALL LE+ + + +VH V LP + F
Sbjct: 70 QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLP---PASETFPPGMPCW 126
Query: 553 VAGWG-VTEDGR--SSLELLAVQQKVFNSEECKARYQ---------ELDPSSQICVGGKV 600
V GWG V D R L V+ + + C A+Y + +C G
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLC-AGNT 185
Query: 601 GKDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTY 654
+D+C+GDSGGPL TW+ + G+VS+G C + PG+YTR+TY
Sbjct: 186 RRDSCQGDSGGPLVCKVNGTWLQA------------GVVSWGEGCA-QPNRPGIYTRVTY 232
Query: 655 FLQWI 659
+L WI
Sbjct: 233 YLDWI 237
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 69 PSLELLAVQQKVFNSEKCKARYQ---------KLDPSSQICVGGKVGKDSCYGDSGGPLT 119
P L V+ + + C A+Y ++ +C G +DSC GDSGGPL
Sbjct: 141 PPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLC-AGNTRRDSCQGDSGGPLV 199
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
++ G+VS+G E C + PG+YTR+TY+L WI
Sbjct: 200 ------CKVNGTWLQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 58/147 (39%), Gaps = 34/147 (23%)
Query: 692 GKDTIVAGWGLT---EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYD 748
G V GWG E+ P L V + + ++C A Y + D + +V D
Sbjct: 122 GMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR----IVRD 177
Query: 749 RYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGI 808
LC G +DSC GDSGGPL+ ++ G+
Sbjct: 178 DMLC--------------------AGNTRRDSCQGDSGGPLV------CKVNGTWLQAGV 211
Query: 809 VSLGPSTCGMLRIPGVYTRTSYFLRWI 835
VS G C PG+YTR +Y+L WI
Sbjct: 212 VSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 309 HLMSCCYYL-AYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTY 367
H+ Y+L AY + + I + M GN +DSC GDSGGPL ++
Sbjct: 156 HICDAKYHLGAYTGDDVRIVRDD--MLCAGNTRRDSCQGDSGGPLV------CKVNGTWL 207
Query: 368 LIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+VS G C PG+Y+R +Y+L WI
Sbjct: 208 QAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSETYNNDIMLIKLKSAAS 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE--LLAVQQKVFNSEECKAR 584
V + LP A +++GWG T+ +S L ++ + + CK+
Sbjct: 96 LXSRVASISLPTSCASA----GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA 151
Query: 585 YQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
+ S+ CVG + GKDAC+GDSGGP+ G L G+VS+G C K+
Sbjct: 152 SSFIITSNMFCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEGCAQKN 201
Query: 644 ENPGVYTRMTYFLQWI 659
+ PG YT++ ++ WI
Sbjct: 202 K-PGFYTKVCNYVSWI 216
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 96 SSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
S+ CVG + GKD+C GDSGGP+ G L G+VS+G E C + PG Y
Sbjct: 158 SNMFCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWG-EGCAQKNKPGFY 206
Query: 155 TRMTYFLQWI 164
T++ ++ WI
Sbjct: 207 TKVCNYVSWI 216
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
CVG + GKD+C GDSGGP++ G L GIVS G C PG YT+
Sbjct: 161 FCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGFYTKV 209
Query: 829 SYFLRWILAT 838
++ WI T
Sbjct: 210 CNYVSWIKQT 219
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
S CVG GKD+C GDSGGP+ G L G+VS G C PG Y
Sbjct: 158 SNMFCVGYLEGGKDACQGDSGGPVVCSGK----------LQGIVSWGEG-CAQKNKPGFY 206
Query: 389 SRTSYFLRWI 398
++ ++ WI
Sbjct: 207 TKVCNYVSWI 216
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Query: 501 FLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLP-YGNAMTRNFENENTIVAGWGVT 559
+L + NDIAL+ L Y+ PVCLP G A+ + + V GWG T
Sbjct: 198 YLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALV---DGKICTVTGWGNT 254
Query: 560 E-DGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVG-GKVGKDACKGDSGGPLTW 615
+ G+ + L + + +++ C Y C G + G DAC+GDSGGP
Sbjct: 255 QYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVC 314
Query: 616 MGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
S R L G+VS+G C ++ PGVYT+++ F +WI ++
Sbjct: 315 EDSISRT--PRWRLCGIVSWGTGCAL-AQKPGVYTKVSDFREWIFQAIK 360
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 35/169 (20%)
Query: 669 IPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEK-KIPSHILLGVNQLVYDRYLCTA 727
+P Y+QPVCLP + +GK V GWG T+ + +L + +C
Sbjct: 222 LPLTEYIQPVCLPAAG--QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC-- 277
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGG 787
NG N+ + + C A Y GI D+C GDSGG
Sbjct: 278 ----NGADFYGNQ-----IKPKMFC-AGYPEGGI-----------------DACQGDSGG 310
Query: 788 PLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
P + S R + R L GIVS G + C + + PGVYT+ S F WI
Sbjct: 311 PFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 356
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
G D+C GDSGGP S + R L G+VS G C + + PGVY++ S F WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 356
Query: 400 DHLDDH 405
+ H
Sbjct: 357 QAIKTH 362
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWIL 165
G D+C GDSGGP S + R L G+VS+G C + PGVYT+++ F +WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 356
Query: 166 DHLE 169
++
Sbjct: 357 QAIK 360
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Query: 501 FLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLP-YGNAMTRNFENENTIVAGWGVT 559
+L + NDIAL+ L Y+ PVCLP G A+ + + V GWG T
Sbjct: 198 YLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALV---DGKICTVTGWGNT 254
Query: 560 E-DGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVG-GKVGKDACKGDSGGPLTW 615
+ G+ + L + + +++ C Y C G + G DAC+GDSGGP
Sbjct: 255 QYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVC 314
Query: 616 MGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
S R L G+VS+G C ++ PGVYT+++ F +WI ++
Sbjct: 315 EDSISRT--PRWRLCGIVSWGTGCAL-AQKPGVYTKVSDFREWIFQAIK 360
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 35/169 (20%)
Query: 669 IPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEK-KIPSHILLGVNQLVYDRYLCTA 727
+P Y+QPVCLP + +GK V GWG T+ + +L + +C
Sbjct: 222 LPLTEYIQPVCLPAAG--QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC-- 277
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGG 787
NG N+ + + C A Y GI D+C GDSGG
Sbjct: 278 ----NGADFYGNQ-----IKPKMFC-AGYPEGGI-----------------DACQGDSGG 310
Query: 788 PLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
P + S R + R L GIVS G + C + + PGVYT+ S F WI
Sbjct: 311 PFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 356
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
G D+C GDSGGP S + R L G+VS G C + + PGVY++ S F WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 356
Query: 400 DHLDDH 405
+ H
Sbjct: 357 QAIKTH 362
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWIL 165
G D+C GDSGGP S + R L G+VS+G C + PGVYT+++ F +WI
Sbjct: 300 GIDACQGDSGGPFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 356
Query: 166 DHLE 169
++
Sbjct: 357 QAIK 360
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P Q I V + + H Y NDI LL+LE+ + V P+ LP A + +
Sbjct: 64 PTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVK--PGQT 121
Query: 551 TIVAGWGVTED-GRSSLELLAVQQKVFNSEECKARYQE-LDPSSQICVGG-KVGKDACKG 607
VAGWG T G+ S L V+ V +C++ + D + ++CVG ++ K + KG
Sbjct: 122 CSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKG 181
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
DSGGPL + G+VSYG G P T+++ F+ WI
Sbjct: 182 DSGGPL----------VCNKVAQGIVSYGRNNGMP---PRACTKVSSFVHWI 220
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKL-DPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSA 127
S L V+ V KC++ + D + ++CVG ++ K S GDSGGPL
Sbjct: 137 SHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLV-------- 188
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG + P T+++ F+ WI
Sbjct: 189 --CNKVAQGIVSYGRNN---GMPPRACTKVSSFVHWI 220
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 63/178 (35%), Gaps = 48/178 (26%)
Query: 663 LEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEK-KIPSHILLGVNQLVYD 721
L+ E VQP+ LP G+ VAGWG T SH L V V +
Sbjct: 92 LQLERKAKRTRAVQPLRLPSNKAQVK--PGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQE 149
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDS 780
C + L YD + +LCVG ++ K S
Sbjct: 150 DRKCES--------------DLRHYYDSTI-----------------ELCVGDPEIKKTS 178
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GDSGGPL+ GIVS G + GM P T+ S F+ WI T
Sbjct: 179 FKGDSGGPLV----------CNKVAQGIVSYGRNN-GM--PPRACTKVSSFVHWIKKT 223
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P Q I V + + H Y NDI LL+LE+ + V P+ LP A + +
Sbjct: 64 PTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVK--PGQT 121
Query: 551 TIVAGWGVTED-GRSSLELLAVQQKVFNSEECKARYQE-LDPSSQICVGG-KVGKDACKG 607
VAGWG T G+ S L V+ V +C++ + D + ++CVG ++ K + KG
Sbjct: 122 CSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKG 181
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
DSGGPL + G+VSYG G P T+++ F+ WI
Sbjct: 182 DSGGPL----------VCNKVAQGIVSYGRNNGMP---PRACTKVSSFVHWI 220
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKL-DPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSA 127
S L V+ V KC++ + D + ++CVG ++ K S GDSGGPL
Sbjct: 137 SHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLV-------- 188
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG + P T+++ F+ WI
Sbjct: 189 --CNKVAQGIVSYGRNN---GMPPRACTKVSSFVHWI 220
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 63/178 (35%), Gaps = 48/178 (26%)
Query: 663 LEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEK-KIPSHILLGVNQLVYD 721
L+ E VQP+ LP G+ VAGWG T SH L V V +
Sbjct: 92 LQLERKAKRTRAVQPLRLPSNKAQVK--PGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQE 149
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDS 780
C + L YD + +LCVG ++ K S
Sbjct: 150 DRKCES--------------DLRHYYDSTI-----------------ELCVGDPEIKKTS 178
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GDSGGPL+ GIVS G + GM P T+ S F+ WI T
Sbjct: 179 FKGDSGGPLV----------CNKVAQGIVSYGRNN-GM--PPRACTKVSSFVHWIKKT 223
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Query: 501 FLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLP-YGNAMTRNFENENTIVAGWGVT 559
+L + NDIAL+ L Y+ PVCLP G A+ + + V GWG T
Sbjct: 81 YLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALV---DGKICTVTGWGNT 137
Query: 560 E-DGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVG-GKVGKDACKGDSGGPLTW 615
+ G+ + L + + +++ C Y C G + G DAC+GDSGGP
Sbjct: 138 QYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVC 197
Query: 616 MGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
S R L G+VS+G C ++ PGVYT+++ F +WI ++
Sbjct: 198 EDSISRT--PRWRLCGIVSWGTGCAL-AQKPGVYTKVSDFREWIFQAIK 243
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 35/169 (20%)
Query: 669 IPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEK-KIPSHILLGVNQLVYDRYLCTA 727
+P Y+QPVCLP + +GK V GWG T+ + +L + +C
Sbjct: 105 LPLTEYIQPVCLPAAG--QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC-- 160
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGG 787
NG N+ + + C A Y GI D+C GDSGG
Sbjct: 161 ----NGADFYGNQ-----IKPKMFC-AGYPEGGI-----------------DACQGDSGG 193
Query: 788 PLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWIL 836
P + S R + R L GIVS G + C + + PGVYT+ S F WI
Sbjct: 194 PFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 239
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
G D+C GDSGGP S + R L G+VS G C + + PGVY++ S F WI
Sbjct: 183 GIDACQGDSGGPFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 239
Query: 400 DHLDDH 405
+ H
Sbjct: 240 QAIKTH 245
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 106 GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWIL 165
G D+C GDSGGP S + R L G+VS+G C + PGVYT+++ F +WI
Sbjct: 183 GIDACQGDSGGPFVCEDSISR--TPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIF 239
Query: 166 DHLE 169
++
Sbjct: 240 QAIK 243
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG-VTEDGRSSLE----- 567
DIALL+L+K ++ Y+HPVCLP +T V GWG + E +++
Sbjct: 99 DIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS 158
Query: 568 -LLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSFDSA 622
L V + CKA + + C G KV DAC+GDSGGP F++
Sbjct: 159 VLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN- 217
Query: 623 ILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS+G C K + G YT + WI
Sbjct: 218 ---RWYQMGIVSWGEGCDRKGKY-GFYTHVFRLKAWI 250
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPLTWMGS 123
+PS+ L V + CKA + + C G KV D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSP 214
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + WI
Sbjct: 215 FNN----RWYQMGIVSWG-EGCDRKGKYGFYTHVFRLKAWI 250
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 70/178 (39%), Gaps = 47/178 (26%)
Query: 669 IPEVHYVQPVCLPYGDG----LKYNFEGKDTIVAGWG-LTE------KKIPSHILLGVNQ 717
+P Y+ PVCLP L+ ++G+ V GWG L E +I +L VN
Sbjct: 109 VPFSDYIHPVCLPDKQTVTSLLRAGYKGR---VTGWGNLRETWTTNINEIQPSVLQVVNL 165
Query: 718 LVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG 777
+ +R +C A + D C A ++ N DT +G
Sbjct: 166 PIVERPVCKA-------------STRIRITDNMFC-AGFKVN----DTKRG--------- 198
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGP + F+ R Y +GIVS G C G YT WI
Sbjct: 199 -DACEGDSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRKGKYGFYTHVFRLKAWI 250
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 326 IDYNSGQMCVGGNVGK----DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGV 381
I C G V D+C GDSGGP F++ R Y +G+VS G C
Sbjct: 179 IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN----RWYQMGIVSWG-EGCDR 233
Query: 382 YEIPGVYSRTSYFLRWILDHLD 403
G Y+ WI +D
Sbjct: 234 KGKYGFYTHVFRLKAWIQKVID 255
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG-VTEDGRSSLE----- 567
DIALL+L+K ++ Y+HPVCLP +T V GWG + E +++
Sbjct: 99 DIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS 158
Query: 568 -LLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSFDSA 622
L V + CKA + + C G KV DAC+GD+GGP F++
Sbjct: 159 VLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFNN- 217
Query: 623 ILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS+G C K + G YT + +WI
Sbjct: 218 ---RWYQMGIVSWGEGCDRKGKY-GFYTHVFRLKRWI 250
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 70/178 (39%), Gaps = 47/178 (26%)
Query: 669 IPEVHYVQPVCLPYGDG----LKYNFEGKDTIVAGWG-LTE------KKIPSHILLGVNQ 717
+P Y+ PVCLP L+ ++G+ V GWG L E +I +L VN
Sbjct: 109 VPFSDYIHPVCLPDKQTVTSLLRAGYKGR---VTGWGNLRETWTTNINEIQPSVLQVVNL 165
Query: 718 LVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG 777
+ +R +C A I C A ++ N DT +G
Sbjct: 166 PIVERPVCKA-----STRIRITDNMFC---------AGFKVN----DTKRG--------- 198
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GD+GGP + F+ R Y +GIVS G C G YT RWI
Sbjct: 199 -DACEGDAGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRKGKYGFYTHVFRLKRWI 250
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPLTWMGS 123
+PS+ L V + CKA + + C G KV D+C GD+GGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSP 214
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 215 FNN----RWYQMGIVSWG-EGCDRKGKYGFYTHVFRLKRWI 250
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 326 IDYNSGQMCVGGNVGK----DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGV 381
I C G V D+C GD+GGP F++ R Y +G+VS G C
Sbjct: 179 IRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFNN----RWYQMGIVSWG-EGCDR 233
Query: 382 YEIPGVYSRTSYFLRWILDHLD 403
G Y+ RWI +D
Sbjct: 234 KGKYGFYTHVFRLKRWIQKVID 255
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 36/185 (19%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTI 552
Q + V + + H + T DIALL LE+ + VH V LP + F
Sbjct: 70 QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP---PASETFPPGMPCW 126
Query: 553 VAGWGVTEDGRS---SLELLAVQQKVFNSEECKARYQ---------ELDPSSQICVGGKV 600
V GWG ++ L V+ + + C A+Y + +C G
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS- 185
Query: 601 GKDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTY 654
+D+CKGDSGGPL TW+ + G+VS+G C + PG+YTR+TY
Sbjct: 186 QRDSCKGDSGGPLVCKVNGTWLQA------------GVVSWGEGCA-QPNRPGIYTRVTY 232
Query: 655 FLQWI 659
+L WI
Sbjct: 233 YLDWI 237
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQ---------KLDPSSQICVGGKVGKDSCYGDSG 115
E P L V+ + + C A+Y ++ +C G +DSC GDSG
Sbjct: 137 EPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS-QRDSCKGDSG 195
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GPL ++ G+VS+G E C + PG+YTR+TY+L WI
Sbjct: 196 GPLV------CKVNGTWLQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 309 HLMSCCYYL-AYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTY 367
H+ Y+L AY + + I + M GN +DSC GDSGGPL ++
Sbjct: 156 HICDAKYHLGAYTGDDVRIIRDD--MLCAGNSQRDSCKGDSGGPLV------CKVNGTWL 207
Query: 368 LIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+VS G C PG+Y+R +Y+L WI
Sbjct: 208 QAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 746 VYDRYLCTAIYE---RNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISAR 802
+ + ++C A Y G + + + G +DSC GDSGGPL+ ++
Sbjct: 152 IMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSCKGDSGGPLV------CKVNGT 205
Query: 803 TYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G+VS G C PG+YTR +Y+L WI
Sbjct: 206 WLQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 38/199 (19%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ + D Q ++VI+ H Y S +DI LL+L++
Sbjct: 53 VTLGAHNITEEEDTW------------QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTI--VAGWG---VTEDGRSSLELLAVQQKVFNSEEC 581
V + P +NF + VAGWG V + G +L+ V+ ++ + + C
Sbjct: 101 LTLAVGTLPFP----SQKNFVPPGRMCRVAGWGRTGVLKPGSDTLQ--EVKLRLMDPQAC 154
Query: 582 KARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCG 640
+ +++ D + Q+CVG + K A KGDSGGPL G+ G+VSYG
Sbjct: 155 -SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----------GIVSYG---R 200
Query: 641 TKSENPGVYTRMTYFLQWI 659
+ ++ P V+TR++++ WI
Sbjct: 201 SDAKPPAVFTRISHYQPWI 219
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFDSAISAR 131
L V+ ++ + + C + ++ D + Q+CVG S + GDSGGPL G+
Sbjct: 141 LQEVKLRLMDPQAC-SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ------ 193
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG D + P V+TR++++ WI
Sbjct: 194 ----GIVSYGRSD---AKPPAVFTRISHYQPWI 219
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
QLCVG + K + GDSGGPL+ G+ GIVS G S + P V+TR
Sbjct: 165 QLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----------GIVSYGRSDA---KPPAVFTR 211
Query: 828 TSYFLRWI 835
S++ WI
Sbjct: 212 ISHYQPWI 219
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 326 IDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
D+N Q+CVG K + GDSGGPL G+ G+VS G + +
Sbjct: 160 FDHNL-QLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----------GIVSYGRSDA---KP 205
Query: 385 PGVYSRTSYFLRWI 398
P V++R S++ WI
Sbjct: 206 PAVFTRISHYQPWI 219
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG-VTEDGRSSLE----- 567
DIALL+L+K ++ Y+HPVCLP +T V GWG + E +++
Sbjct: 99 DIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS 158
Query: 568 -LLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSFDSA 622
L V + CKA + + C G KV DAC+GDSGGP F++
Sbjct: 159 VLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN- 217
Query: 623 ILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS G C K + G YT + +WI
Sbjct: 218 ---RWYQMGIVSAGAGCDRKGKY-GFYTHVFRLKRWI 250
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 72/178 (40%), Gaps = 47/178 (26%)
Query: 669 IPEVHYVQPVCLPYGDG----LKYNFEGKDTIVAGWG-LTE------KKIPSHILLGVNQ 717
+P Y+ PVCLP L+ ++G+ V GWG L E +I +L VN
Sbjct: 109 VPFSDYIHPVCLPDKQTVTSLLRAGYKGR---VTGWGNLRETWTTNINEIQPSVLQVVNL 165
Query: 718 LVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG 777
+ +R +C A + D C A ++ N DT +G
Sbjct: 166 PIVERPVCKA-------------STRIRITDNMFC-AGFKVN----DTKRG--------- 198
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGP + F+ R Y +GIVS G + C G YT RWI
Sbjct: 199 -DACEGDSGGPFVMKSPFNN----RWYQMGIVSAG-AGCDRKGKYGFYTHVFRLKRWI 250
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPLTWMGS 123
+PS+ L V + CKA + + C G KV D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSP 214
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS G C + G YT + +WI
Sbjct: 215 FNN----RWYQMGIVSAG-AGCDRKGKYGFYTHVFRLKRWI 250
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 326 IDYNSGQMCVGGNVGK----DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGV 381
I C G V D+C GDSGGP F++ R Y +G+VS G A C
Sbjct: 179 IRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN----RWYQMGIVSAG-AGCDR 233
Query: 382 YEIPGVYSRTSYFLRWILDHLD 403
G Y+ RWI +D
Sbjct: 234 KGKYGFYTHVFRLKRWIQKVID 255
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 34/197 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ + D Q ++VI+ H Y S +DI LL+L++
Sbjct: 53 VTLGAHNITEEEDTW------------QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWG---VTEDGRSSLELLAVQQKVFNSEECKA 583
V LP+ + VAGWG V + G +L+ V+ ++ + + C +
Sbjct: 101 LTLAVG--TLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQ--EVKLRLMDPQAC-S 155
Query: 584 RYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
+++ D + Q+CVG + K A KGDSGGPL G+ G+VSYG +
Sbjct: 156 HFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----------GIVSYG---RSD 202
Query: 643 SENPGVYTRMTYFLQWI 659
++ P V+TR++++ WI
Sbjct: 203 AKPPAVFTRISHYQPWI 219
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 33 VMIIKIKTRARS-------PFIPNIRFKSPIHLLALFS---TEDKRPSLELLA-VQQKVF 81
+M++K+K +A PF F P + + T +P + L V+ ++
Sbjct: 90 IMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLM 149
Query: 82 NSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFDSAISARNYLIGLVSY 140
+ + C + ++ D + Q+CVG S + GDSGGPL G+ G+VSY
Sbjct: 150 DPQAC-SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----------GIVSY 198
Query: 141 GPEDCGKTENPGVYTRMTYFLQWI 164
G D + P V+TR++++ WI
Sbjct: 199 GRSD---AKPPAVFTRISHYQPWI 219
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
QLCVG + K + GDSGGPL+ G+ GIVS G S + P V+TR
Sbjct: 165 QLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----------GIVSYGRSDA---KPPAVFTR 211
Query: 828 TSYFLRWI 835
S++ WI
Sbjct: 212 ISHYQPWI 219
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 326 IDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
D+N Q+CVG K + GDSGGPL G+ G+VS G + +
Sbjct: 160 FDHNL-QLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----------GIVSYGRSDA---KP 205
Query: 385 PGVYSRTSYFLRWI 398
P V++R S++ WI
Sbjct: 206 PAVFTRISHYQPWI 219
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 504 HENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR 563
H +Y SG ND+A+L+L S G + L + + + VAGWG T +G
Sbjct: 75 HPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAA--SGSDPVAGSSATVAGWGATSEGG 130
Query: 564 SS--LELLAVQQKVFNSEECKARYQELDPSSQI-CVG-GKVGKDACKGDSGGPLTWMGSF 619
SS + LL V + + C+A+Y ++Q+ C G GKD+C+GDSGGP+
Sbjct: 131 SSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPI------ 184
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ + N LIG VS+G C + GVY + +I
Sbjct: 185 ---VDSSNTLIGAVSWGNGC-ARPNYSGVYASVGALRSFI 220
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 71 LELLAVQQKVFNSEKCKARYQKLDPSSQI-CVG-GKVGKDSCYGDSGGPLTWMGSFDSAI 128
+ LL V + + C+A+Y ++Q+ C G GKDSC GDSGGP+ +
Sbjct: 135 VNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPI---------V 185
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ N LIG VS+G C + GVY + +I
Sbjct: 186 DSSNTLIGAVSWG-NGCARPNYSGVYASVGALRSFI 220
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 51/147 (34%), Gaps = 42/147 (28%)
Query: 691 EGKDTIVAGWGLTEKKIPSH--ILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYD 748
G VAGWG T + S LL V + R C A Y + I+ +
Sbjct: 114 AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT------------N 161
Query: 749 RYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGI 808
+ C + GKDSC GDSGGP+ + + L+G
Sbjct: 162 QMFCAGVSSG------------------GKDSCQGDSGGPI---------VDSSNTLIGA 194
Query: 809 VSLGPSTCGMLRIPGVYTRTSYFLRWI 835
VS G + C GVY +I
Sbjct: 195 VSWG-NGCARPNYSGVYASVGALRSFI 220
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKDSC GDSGGP+ + + LIG VS G C GVY+ LR +
Sbjct: 172 GKDSCQGDSGGPI---------VDSSNTLIGAVSWGNG-CARPNYSGVYASVGA-LRSFI 220
Query: 400 D 400
D
Sbjct: 221 D 221
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG-VTEDGRSSLELLAV 571
DIAL++L+K ++ Y+HPVCLP + V GWG + E G+ S+ L V
Sbjct: 98 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQPSV-LQVV 156
Query: 572 QQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDSAILAR 626
+ CK + + C G GK G DAC+GDSGGP F++ R
Sbjct: 157 NLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN----R 211
Query: 627 NYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
Y +G+VS+G C + G YT + +WI
Sbjct: 212 WYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 243
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 67/172 (38%), Gaps = 52/172 (30%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAI 728
Y+ PVCLP + L+ ++G+ V GWG L EK PS +L VN + +R +C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKEKGQPS-VLQVVNLPIVERPVC--- 166
Query: 729 YERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNG 783
++ I C G GK G D+C G
Sbjct: 167 -----------------------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEG 196
Query: 784 DSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 197 DSGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLT 119
E +PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 146 EKGQPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFV 203
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 204 MKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 243
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 22/166 (13%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS--GEPNMRNDIALL 297
I+ ++L + A SD P C PD A +Q +V + G+P++ + L
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQPSVLQVVNLP 159
Query: 298 RLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGS 357
+ERP + T + DN Y + G G D+C GDSGGP
Sbjct: 160 IVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGGPFVMKSP 207
Query: 358 FDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 FNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 248
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG-VTEDGRSSLELLAV 571
DIAL++L+K ++ Y+HPVCLP + V GWG + E G+ S+ L V
Sbjct: 98 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSV-LQVV 156
Query: 572 QQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDSAILAR 626
+ CK + + C G GK G DAC+GDSGGP F++ R
Sbjct: 157 NLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN----R 211
Query: 627 NYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
Y +G+VS+G C + G YT + +WI
Sbjct: 212 WYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 243
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 65/172 (37%), Gaps = 52/172 (30%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAI 728
Y+ PVCLP L+ ++G+ V GWG L E PS +L VN + +R +C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETGQPS-VLQVVNLPIVERPVC--- 166
Query: 729 YERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNG 783
++ I C G GK G D+C G
Sbjct: 167 -----------------------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEG 196
Query: 784 DSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 197 DSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLT 119
E +PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 146 ETGQPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFV 203
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 204 MKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 243
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHF--SGEPNMRNDIALL 297
I+ ++L + A SD P C PD A +Q +V + +G+P++ + L
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSVLQVVNLP 159
Query: 298 RLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGS 357
+ERP + T + DN Y + G G D+C GDSGGP
Sbjct: 160 IVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGGPFVMKSP 207
Query: 358 FDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 FNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 248
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG-VTEDGRSSLELLAV 571
DIAL++L+K ++ Y+HPVCLP + V GWG + E G+ S+ L V
Sbjct: 98 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSV-LQVV 156
Query: 572 QQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDSAILAR 626
+ CK + + C G GK G DAC+GDSGGP F++ R
Sbjct: 157 NLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN----R 211
Query: 627 NYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
Y +G+VS+G C + G YT + +WI
Sbjct: 212 WYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 243
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 65/172 (37%), Gaps = 52/172 (30%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAI 728
Y+ PVCLP L+ ++G+ V GWG L E PS +L VN + +R +C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETGQPS-VLQVVNLPIVERPVC--- 166
Query: 729 YERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNG 783
++ I C G GK G D+C G
Sbjct: 167 -----------------------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEG 196
Query: 784 DSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 197 DSGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLT 119
E +PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 146 ETGQPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFV 203
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 204 MKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 243
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHF--SGEPNMRNDIALL 297
I+ ++L + A SD P C PD A +Q +V + +G+P++ + L
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSVLQVVNLP 159
Query: 298 RLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGS 357
+ERP + T + DN Y + G G D+C GDSGGP
Sbjct: 160 IVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGGPFVMKSP 207
Query: 358 FDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 FNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 248
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 34/184 (18%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q + V + + H + T DIALL LE+ + VH V LP A V
Sbjct: 70 QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP--PASETFPPGMPCWV 127
Query: 554 AGWGVTEDGRS---SLELLAVQQKVFNSEECKARYQ---------ELDPSSQICVGGKVG 601
GWG ++ L V+ + + C A+Y + +C G
Sbjct: 128 TGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS-Q 186
Query: 602 KDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+D+C+GDSGGPL TW+ + G+VS+G C + PG+YTR+TY+
Sbjct: 187 RDSCQGDSGGPLVCKVNGTWLQA------------GVVSWGEGCA-QPNRPGIYTRVTYY 233
Query: 656 LQWI 659
L WI
Sbjct: 234 LDWI 237
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQ---------KLDPSSQICVGGKVGKDSCYGDSG 115
E P L V+ + + C A+Y ++ +C G +DSC GDSG
Sbjct: 137 EPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS-QRDSCQGDSG 195
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GPL ++ G+VS+G E C + PG+YTR+TY+L WI
Sbjct: 196 GPLV------CKVNGTWLQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 309 HLMSCCYYL-AYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTY 367
H+ Y+L AY + + I + M GN +DSC GDSGGPL ++
Sbjct: 156 HICDAKYHLGAYTGDDVRIIRDD--MLCAGNSQRDSCQGDSGGPLV------CKVNGTWL 207
Query: 368 LIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+VS G C PG+Y+R +Y+L WI
Sbjct: 208 QAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 746 VYDRYLCTAIYE---RNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISAR 802
+ + ++C A Y G + + + G +DSC GDSGGPL+ ++
Sbjct: 152 IMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSCQGDSGGPLV------CKVNGT 205
Query: 803 TYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G+VS G C PG+YTR +Y+L WI
Sbjct: 206 WLQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWI 237
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ + D Q ++VI+ H Y S +DI LL+L++
Sbjct: 53 VTLGAHNITEEEDTW------------QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWG---VTEDGRSSLELLAVQQKVFNSEECKA 583
V LP+ + VAGWG V + G +L+ V+ ++ + + C +
Sbjct: 101 LTLAVG--TLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQ--EVKLRLMDPQAC-S 155
Query: 584 RYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
+++ D + Q+CVG + K A KGDSGGPL G G+VSYG +
Sbjct: 156 HFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYG---RSD 202
Query: 643 SENPGVYTRMTYFLQWI 659
++ P V+TR++++ WI
Sbjct: 203 AKPPAVFTRISHYRPWI 219
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 33 VMIIKIKTRARS-------PFIPNIRFKSPIHLLALFS---TEDKRPSLELLA-VQQKVF 81
+M++K+K +A PF F P + + T +P + L V+ ++
Sbjct: 90 IMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLM 149
Query: 82 NSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFDSAISARNYLIGLVSY 140
+ + C + ++ D + Q+CVG S + GDSGGPL G G+VSY
Sbjct: 150 DPQAC-SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSY 198
Query: 141 GPEDCGKTENPGVYTRMTYFLQWI 164
G D + P V+TR++++ WI
Sbjct: 199 GRSD---AKPPAVFTRISHYRPWI 219
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
QLCVG + K + GDSGGPL+ G GIVS G S + P V+TR
Sbjct: 165 QLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYGRSDA---KPPAVFTR 211
Query: 828 TSYFLRWI 835
S++ WI
Sbjct: 212 ISHYRPWI 219
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 326 IDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
D+N Q+CVG K + GDSGGPL G G+VS G + +
Sbjct: 160 FDHNL-QLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYGRSDA---KP 205
Query: 385 PGVYSRTSYFLRWI 398
P V++R S++ WI
Sbjct: 206 PAVFTRISHYRPWI 219
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ + D Q ++VI+ H Y S +DI LL+L++
Sbjct: 53 VTLGAHNITEEEDTW------------QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWG---VTEDGRSSLELLAVQQKVFNSEECKA 583
V LP+ + VAGWG V + G +L+ V+ ++ + + C +
Sbjct: 101 LTLAVG--TLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQ--EVKLRLMDPQAC-S 155
Query: 584 RYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
+++ D + Q+CVG + K A KGDSGGPL G G+VSYG +
Sbjct: 156 HFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYG---RSD 202
Query: 643 SENPGVYTRMTYFLQWI 659
++ P V+TR++++ WI
Sbjct: 203 AKPPAVFTRISHYRPWI 219
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 33 VMIIKIKTRARS-------PFIPNIRFKSPIHLLALFS---TEDKRPSLELLA-VQQKVF 81
+M++K+K +A PF F P + + T +P + L V+ ++
Sbjct: 90 IMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLM 149
Query: 82 NSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFDSAISARNYLIGLVSY 140
+ + C + ++ D + Q+CVG S + GDSGGPL G G+VSY
Sbjct: 150 DPQAC-SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSY 198
Query: 141 GPEDCGKTENPGVYTRMTYFLQWI 164
G D + P V+TR++++ WI
Sbjct: 199 GRSDA---KPPAVFTRISHYRPWI 219
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
QLCVG + K + GDSGGPL+ G GIVS G S + P V+TR
Sbjct: 165 QLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYGRSDA---KPPAVFTR 211
Query: 828 TSYFLRWI 835
S++ WI
Sbjct: 212 ISHYRPWI 219
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 85/247 (34%), Gaps = 87/247 (35%)
Query: 211 IIGGYVAKLGSIPWIA--RIAYSRTP------------------HCATNPEQISSVRLGE 250
IIGG +K S P++A I S P HCA + +V LG
Sbjct: 1 IIGGTESKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG---RSITVTLGA 57
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLER--------- 301
H+ + D Q + V+K H ++ + +DI LL+L+
Sbjct: 58 HNITEEEDT----------WQKLEVIKQFRHPKYNTS-TLHHDIMLLKLKEKASLTLAVG 106
Query: 302 ----PPRLNGTHLMSCCYYLAYADNGI-------------------------SIDYNSGQ 332
P + N C + G+ D+N Q
Sbjct: 107 TLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNL-Q 165
Query: 333 MCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
+CVG K + GDSGGPL G G+VS G + + P V++R
Sbjct: 166 LCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYGRSDA---KPPAVFTRI 212
Query: 392 SYFLRWI 398
S++ WI
Sbjct: 213 SHYRPWI 219
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 496 IKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPY-GNAMTRNFENENTIVA 554
+ V HE + +NDIAL++L ++ E + CLP G+ + +++ V
Sbjct: 86 VGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYP---CFVT 142
Query: 555 GWG-VTEDGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVGGKVGKDACKGDSGG 611
GWG + +G + EL Q V + C R + + +C GG AC GDSGG
Sbjct: 143 GWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDSGG 202
Query: 612 PLTWM--GSFDSAILARNYLIGLVSYGP--TCGTKSENPGVYTRMTYFLQWILDHLE 664
PL G +D + G+VS+G +C T + P V+TR++ ++ WI L+
Sbjct: 203 PLNCQADGQWD--------VRGIVSFGSGLSCNT-FKKPTVFTRVSAYIDWINQKLQ 250
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 94/254 (37%), Gaps = 78/254 (30%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSR-------------TP-------HCATNPEQISSVRLG 249
R++GG A S PW + Y R TP HC +N V LG
Sbjct: 13 RVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN-TLTYRVALG 71
Query: 250 EHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTH 309
+++ + + + + V + HE ++ +RNDIAL++L L T
Sbjct: 72 KNNLEVEDEAGSLY---------VGVDTIFVHEKWNSFL-VRNDIALIKLAETVELGDTI 121
Query: 310 LMSC-------------CYYLA----YADNGISIDYNSG--------------------- 331
++C C+ Y + I+ + G
Sbjct: 122 QVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVK 181
Query: 332 --QMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPA-SCGVYEIPGVY 388
+C GG+ +CNGDSGGPL D R G+VS G SC ++ P V+
Sbjct: 182 ETMVCAGGDGVISACNGDSGGPLNCQA--DGQWDVR----GIVSFGSGLSCNTFKKPTVF 235
Query: 389 SRTSYFLRWILDHL 402
+R S ++ WI L
Sbjct: 236 TRVSAYIDWINQKL 249
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGG 787
+Y I+ + +G L V D C+ +R+ + +C GG +CNGDSGG
Sbjct: 147 LYTNGPIAAELQQG-LQPVVDYATCS---QRDWWGTTVKETMVCAGGDGVISACNGDSGG 202
Query: 788 PLMWMGSFDRSISARTYLLGIVSLGPS-TCGMLRIPGVYTRTSYFLRWI 835
PL + + + GIVS G +C + P V+TR S ++ WI
Sbjct: 203 PL------NCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWI 245
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 70 SLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSA 127
+ EL Q V + C R + + +C GG +C GDSGGPL D
Sbjct: 154 AAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQA--DGQ 211
Query: 128 ISARNYLIGLVSYGPE-DCGKTENPGVYTRMTYFLQWILDHLE 169
R G+VS+G C + P V+TR++ ++ WI L+
Sbjct: 212 WDVR----GIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ 250
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ + D Q ++VI+ H Y S +DI LL+L++
Sbjct: 55 VTLGAHNITEEEDTW------------QKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS 102
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWG---VTEDGRSSLELLAVQQKVFNSEECKA 583
V LP+ + VAGWG V + G +L+ V+ ++ + + C +
Sbjct: 103 LTLAVG--TLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQ--EVKLRLMDPQAC-S 157
Query: 584 RYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
+++ D + Q+CVG + K A KGDSGGPL G G+VSYG +
Sbjct: 158 HFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYG---RSD 204
Query: 643 SENPGVYTRMTYFLQWI 659
++ P V+TR++++ WI
Sbjct: 205 AKPPAVFTRISHYRPWI 221
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 33 VMIIKIKTRARS-------PFIPNIRFKSPIHLLALFS---TEDKRPSLELLA-VQQKVF 81
+M++K+K +A PF F P + + T +P + L V+ ++
Sbjct: 92 IMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLM 151
Query: 82 NSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFDSAISARNYLIGLVSY 140
+ + C + ++ D + Q+CVG S + GDSGGPL G G+VSY
Sbjct: 152 DPQAC-SHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSY 200
Query: 141 GPEDCGKTENPGVYTRMTYFLQWI 164
G D + P V+TR++++ WI
Sbjct: 201 GRSD---AKPPAVFTRISHYRPWI 221
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
QLCVG + K + GDSGGPL+ G GIVS G S + P V+TR
Sbjct: 167 QLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYGRSDA---KPPAVFTR 213
Query: 828 TSYFLRWI 835
S++ WI
Sbjct: 214 ISHYRPWI 221
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 326 IDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
D+N Q+CVG K + GDSGGPL G G+VS G + +
Sbjct: 162 FDHNL-QLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----------GIVSYGRSDA---KP 207
Query: 385 PGVYSRTSYFLRWI 398
P V++R S++ WI
Sbjct: 208 PAVFTRISHYRPWI 221
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 34/218 (15%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWG--VTEDGRSSLELLAV 571
L++ + + + + +CLP +M + + + + G+G + D +L
Sbjct: 101 LKIRSKEGRCAQPSRTIQTICLP---SMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMT 157
Query: 572 QQKVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNY 628
K+ + EC+ Y + +C K DAC+GDSGGPL ++ R
Sbjct: 158 VVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDACQGDSGGPLV------CSLQGRMT 211
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 212 LTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 248
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
D+C GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DACQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LEDE 171
++E
Sbjct: 245 TKEE 248
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
D+C GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DACQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DACQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 504 HENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR 563
H +Y SG ND+A+L+L S G + L + + + VAGWG T +G
Sbjct: 75 HPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAA--SGSDPVAGSSATVAGWGATSEGG 130
Query: 564 SS--LELLAVQQKVFNSEECKARYQELDPSSQI-CVG-GKVGKDACKGDSGGPLTWMGSF 619
SS + LL V + + C+A+Y ++Q+ C G GKD+C+GD GGP+
Sbjct: 131 SSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDXGGPI------ 184
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ + N LIG VS+G C + GVY + +I
Sbjct: 185 ---VDSSNTLIGAVSWGNGC-ARPNYSGVYASVGALRSFI 220
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 71 LELLAVQQKVFNSEKCKARYQKLDPSSQI-CVG-GKVGKDSCYGDSGGPLTWMGSFDSAI 128
+ LL V + + C+A+Y ++Q+ C G GKDSC GD GGP+ +
Sbjct: 135 VNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDXGGPI---------V 185
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ N LIG VS+G C + GVY + +I
Sbjct: 186 DSSNTLIGAVSWG-NGCARPNYSGVYASVGALRSFI 220
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 50/147 (34%), Gaps = 42/147 (28%)
Query: 691 EGKDTIVAGWGLTEKKIPSH--ILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYD 748
G VAGWG T + S LL V + R C A Y + I+ +
Sbjct: 114 AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT------------N 161
Query: 749 RYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGI 808
+ C + GKDSC GD GGP+ + + L+G
Sbjct: 162 QMFCAGVSSG------------------GKDSCQGDXGGPI---------VDSSNTLIGA 194
Query: 809 VSLGPSTCGMLRIPGVYTRTSYFLRWI 835
VS G + C GVY +I
Sbjct: 195 VSWG-NGCARPNYSGVYASVGALRSFI 220
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKDSC GD GGP+ + + LIG VS G C GVY+ LR +
Sbjct: 172 GKDSCQGDXGGPI---------VDSSNTLIGAVSWGNG-CARPNYSGVYASVGA-LRSFI 220
Query: 400 D 400
D
Sbjct: 221 D 221
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 36/185 (19%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTI 552
Q + V + + H + T DIALL LE+ + VH V LP + F
Sbjct: 70 QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLP---PASETFPPGMPCW 126
Query: 553 VAGWGVTEDGRS---SLELLAVQQKVFNSEECKARYQ---------ELDPSSQICVGGKV 600
V GWG ++ L V+ + + C A+Y + +C G
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS- 185
Query: 601 GKDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTY 654
+D+CKGDSGGPL TW+ + G+VS+ C + PG+YTR+TY
Sbjct: 186 QRDSCKGDSGGPLVCKVNGTWLQA------------GVVSWDEGCA-QPNRPGIYTRVTY 232
Query: 655 FLQWI 659
+L WI
Sbjct: 233 YLDWI 237
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 69 PSLELLAVQQKVFNSEKCKARYQ---------KLDPSSQICVGGKVGKDSCYGDSGGPLT 119
P L V+ + + C A+Y ++ +C G +DSC GDSGGPL
Sbjct: 141 PPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS-QRDSCKGDSGGPLV 199
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
++ G+VS+ E C + PG+YTR+TY+L WI
Sbjct: 200 ------CKVNGTWLQAGVVSWD-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 309 HLMSCCYYL-AYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTY 367
H+ Y+L AY + + I + M GN +DSC GDSGGPL ++
Sbjct: 156 HICDAKYHLGAYTGDDVRIIRDD--MLCAGNSQRDSCKGDSGGPLV------CKVNGTWL 207
Query: 368 LIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+VS C PG+Y+R +Y+L WI
Sbjct: 208 QAGVVSWD-EGCAQPNRPGIYTRVTYYLDWI 237
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 746 VYDRYLCTAIYE---RNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISAR 802
+ + ++C A Y G + + + G +DSC GDSGGPL+ ++
Sbjct: 152 IMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSCKGDSGGPLV------CKVNGT 205
Query: 803 TYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G+VS C PG+YTR +Y+L WI
Sbjct: 206 WLQAGVVSWD-EGCAQPNRPGIYTRVTYYLDWI 237
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + PG YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKPGFYTHVFRLKKWI 250
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + PG YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKPGFYTHVFRLKKWI 250
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C PG YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKPGFYTHVFRLKKWI 250
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C PG Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKPGFYTHVFRLKKWIQKVID 255
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q +++ +F+ T NDI L++L+ + + N +V + + + T V
Sbjct: 71 QTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVK---MLHIRSKTSLRSGTKCKV 127
Query: 554 AGWGVTEDG--RSSLELLAVQQKVFNSEECKAR-YQELDP---SSQICVGGKVG-KDACK 606
GWG T+ R S L V V + + C ++ Y DP +C G G KD+CK
Sbjct: 128 TGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCK 187
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQ-WILDHL 663
GD+GGPL G F + +VS G CG ++ PG+YT +T Q WI +L
Sbjct: 188 GDAGGPLICKGVFHA----------IVSGGHECGVATK-PGIYTLLTKKYQTWIKSNL 234
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 68 RPSLELLAVQQKVFNSEKCKAR-YQKLDP---SSQICVGGKVG-KDSCYGDSGGPLTWMG 122
RPS L V V + + C ++ Y DP +C G G KDSC GD+GGPL G
Sbjct: 139 RPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG 198
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQ-WILDHL 168
F + +S G +CG PG+YT +T Q WI +L
Sbjct: 199 VFHAIVS-----------GGHECGVATKPGIYTLLTKKYQTWIKSNL 234
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 737 DTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSF 795
DT + V R LC + NG T K +C G G KDSC GD+GGPL+ G F
Sbjct: 142 DTLREVTVTVLSRKLCNSQSYYNGDPFIT-KDMVCAGDAKGQKDSCKGDAGGPLICKGVF 200
Query: 796 DRSISARTYLLGIVSLGPSTCGMLRIPGVYT-RTSYFLRWI 835
+S G CG+ PG+YT T + WI
Sbjct: 201 HAIVS-----------GGHECGVATKPGIYTLLTKKYQTWI 230
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 333 MCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS-R 390
+C G G KDSC GD+GGPL G F + +S G CGV PG+Y+
Sbjct: 174 VCAGDAKGQKDSCKGDAGGPLICKGVFHAIVS-----------GGHECGVATKPGIYTLL 222
Query: 391 TSYFLRWILDHL 402
T + WI +L
Sbjct: 223 TKKYQTWIKSNL 234
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSFDS 621
+ L V + CK + + C G KV DAC+GDSGGP F++
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN 217
Query: 622 AILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS+G C K + G YT + +WI
Sbjct: 218 ----RWYQMGIVSWGEGCDRKGKY-GFYTHVFRLKKWI 250
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPLTWMGS 123
+PS+ L V + CK + + C G KV D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSP 214
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 215 FNN----RWYQMGIVSWG-EGCDRKGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 47/173 (27%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLG-------VNQLVYDR 722
Y+ PVCLP L+ ++G+ V GWG ++ +++ G VN + +R
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 170
Query: 723 YLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCN 782
+C ++ I C A ++ N DT +G D+C
Sbjct: 171 PVC-----KDSTRIRITDNMFC---------AGFKVN----DTKRG----------DACE 202
Query: 783 GDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GDSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 203 GDSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRKGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 37/177 (20%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGK----DSCNG 346
+ L +ERP + I C G V D+C G
Sbjct: 160 LQVVNLPIVERP----------------VCKDSTRIRITDNMFCAGFKVNDTKRGDACEG 203
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
DSGGP F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 204 DSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRKGKYGFYTHVFRLKKWIQKVID 255
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 34/218 (15%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWG--VTEDGRSSLELLAV 571
L++ + + + + +CLP +M + + + + G+G + D +L
Sbjct: 101 LKIRSKEGRCAQPSRTIQTICLP---SMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMT 157
Query: 572 QQKVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNY 628
K+ + EC+ Y + +C K D+C+GDSGGPL ++ R
Sbjct: 158 VVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQGRMT 211
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 212 LTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 248
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LEDE 171
++E
Sbjct: 245 TKEE 248
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTEDGRSSLELLAVQ 572
DIAL++L+K ++ Y+HPVCLP + V GWG + S L++ V
Sbjct: 98 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKGQPSVLQV--VN 155
Query: 573 QKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDSAILARN 627
+ CK + + C G GK G DAC+GDSGGP F++ R
Sbjct: 156 LPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN----RW 210
Query: 628 YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
Y +G+VS+G C + G YT + +WI
Sbjct: 211 YQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 241
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 20/164 (12%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRL 299
I+ ++L + A SD P C PD A +Q +V + G+P++ + L +
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKGQPSVLQVVNLPIV 159
Query: 300 ERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFD 359
ERP + T + DN Y + G G D+C GDSGGP F+
Sbjct: 160 ERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGGPFVMKSPFN 207
Query: 360 SAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
+ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 N----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 246
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 147 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 204
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 205 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 241
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 64/171 (37%), Gaps = 52/171 (30%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG K PS +L VN + +R +C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWG-NLKGQPS-VLQVVNLPIVERPVC---- 164
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
++ I C G GK G D+C GD
Sbjct: 165 ----------------------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 195
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 196 SGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 241
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG---------VTEDGR 563
DIALL+L++ E + Y+HPVCLP + V GWG V E
Sbjct: 98 RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQP 157
Query: 564 SSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSF 619
S L++ V + CKA + + C G K G+ DAC+GDSGGP +
Sbjct: 158 SVLQV--VNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPY 215
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 216 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPL 118
S + +PS+ L V + CKA + + C G K G+ D+C GDSGGP
Sbjct: 151 SVAEVQPSV-LQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 209
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
S + R Y +G+VS+G E C + G YT + +WI
Sbjct: 210 V----MKSPYNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 62/177 (35%), Gaps = 55/177 (31%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWG-------LTEKKIPSHILLGVNQLVYDR 722
Y+ PVCLP L F+G+ V GWG + ++ +L VN + +R
Sbjct: 114 YIHPVCLPDKQTAAKLLHAGFKGR---VTGWGNRRETWTTSVAEVQPSVLQVVNLPLVER 170
Query: 723 YLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGK---- 778
+C A I C G K G+
Sbjct: 171 PVCKA--------------------------------STRIRITDNMFCAGYKPGEGKRG 198
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGP + ++ R Y +GIVS G C G YT +WI
Sbjct: 199 DACEGDSGGPFVMKSPYNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 287 EPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNG 346
+P++ + L +ERP + + DN Y G+ G G D+C G
Sbjct: 156 QPSVLQVVNLPLVERP-------VCKASTRIRITDNMFCAGYKPGE----GKRG-DACEG 203
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDHF 406
DSGGP S + R Y +G+VS G C G Y+ +WI +D
Sbjct: 204 DSGGPFV----MKSPYNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID--- 255
Query: 407 VRLG 410
RLG
Sbjct: 256 -RLG 258
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG---------VTEDGR 563
DIALL+L++ E + Y+HPVCLP + V GWG V E
Sbjct: 98 RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQP 157
Query: 564 SSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSF 619
S L++ V + CKA + + C G K G+ DAC+GDSGGP +
Sbjct: 158 SVLQV--VNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPY 215
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 216 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPL 118
S + +PS+ L V + CKA + + C G K G+ D+C GDSGGP
Sbjct: 151 SVAEVQPSV-LQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 209
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
S + R Y +G+VS+G E C + G YT + +WI
Sbjct: 210 V----MKSPYNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 62/177 (35%), Gaps = 55/177 (31%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWG-------LTEKKIPSHILLGVNQLVYDR 722
Y+ PVCLP L F+G+ V GWG + ++ +L VN + +R
Sbjct: 114 YIHPVCLPDKQTAAKLLHAGFKGR---VTGWGNRRETWTTSVAEVQPSVLQVVNLPLVER 170
Query: 723 YLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGK---- 778
+C A I C G K G+
Sbjct: 171 PVCKA--------------------------------STRIRITDNMFCAGYKPGEGKRG 198
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGP + ++ R Y +GIVS G C G YT +WI
Sbjct: 199 DACEGDSGGPFVMKSPYNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 287 EPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNG 346
+P++ + L +ERP + + DN Y G+ G G D+C G
Sbjct: 156 QPSVLQVVNLPLVERP-------VCKASTRIRITDNMFCAGYKPGE----GKRG-DACEG 203
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
DSGGP S + R Y +G+VS G C G Y+ +WI +D
Sbjct: 204 DSGGPFV----MKSPYNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 18/150 (12%)
Query: 504 HENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR 563
H +Y SG ND+A+L+L S G + L + + + VAGWG T +G
Sbjct: 75 HPSY--SGNNNDLAILKLSTSIPSGGNIGYARL--AASGSDPVAGSSATVAGWGATSEGG 130
Query: 564 SS--LELLAVQQKVFNSEECKARYQELDPSSQI-CVG-GKVGKDACKGDSGGPLTWMGSF 619
SS + LL V + + C+A+Y ++Q+ C G GKD+C+GDSGGP+
Sbjct: 131 SSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIV----- 185
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVY 649
DS+ N LIG VS+G C + GVY
Sbjct: 186 DSS----NTLIGAVSWGNGCA-RPNYSGVY 210
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 71 LELLAVQQKVFNSEKCKARYQKLDPSSQI-CVG-GKVGKDSCYGDSGGPLTWMGSFDSAI 128
+ LL V + + C+A+Y ++Q+ C G GKDSC GDSGGP+ +
Sbjct: 135 VNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPI---------V 185
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVY 154
+ N LIG VS+G C + GVY
Sbjct: 186 DSSNTLIGAVSWG-NGCARPNYSGVY 210
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 746 VYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTY 804
+ R C A Y G S TN+ C G GKDSC GDSGGP+ + +
Sbjct: 144 IVSRATCRAQY---GTSAITNQ-MFCAGVSSGGKDSCQGDSGGPI---------VDSSNT 190
Query: 805 LLGIVSLGPSTCGMLRIPGVY 825
L+G VS G + C GVY
Sbjct: 191 LIGAVSWG-NGCARPNYSGVY 210
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
GKDSC GDSGGP+ + + LIG VS G C GVY+
Sbjct: 172 GKDSCQGDSGGPI---------VDSSNTLIGAVSWG-NGCARPNYSGVYA 211
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 42/222 (18%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 76 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 123
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + +CLP + N+ +T G+ +S + L +Q
Sbjct: 124 LKIRSKEGRCAQPSRTIQTICLP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 176
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 177 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 230
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
R L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 231 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 271
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 215 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 267
Query: 168 LEDE 171
++E
Sbjct: 268 TKEE 271
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 215 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 267
Query: 402 LDD 404
+
Sbjct: 268 TKE 270
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 215 DSCQGDSGGPLVC------SLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWI 264
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI- 552
Q IKV + + HE+Y +DI LL+LEK E V+ V LP + +F + +
Sbjct: 68 QKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPS----DFIHPGAMC 123
Query: 553 -VAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDS 609
AGWG T +S L V+ ++ + + C Y+ + Q+CVG + A GDS
Sbjct: 124 WAAGWGKTGVRDPTSYTLREVELRIMDEKAC-VDYRYYEYKFQVCVGSPTTLRAAFMGDS 182
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGPL G G+VSYG ++ P ++TR++ ++ WI
Sbjct: 183 GGPLLCAGVAH----------GIVSYG---HPDAKPPAIFTRVSTYVPWI 219
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFDSAI 128
S L V+ ++ + + C Y+ + Q+CVG + + GDSGGPL G
Sbjct: 138 SYTLREVELRIMDEKAC-VDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAGVAH--- 193
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG D + P ++TR++ ++ WI
Sbjct: 194 -------GIVSYGHPD---AKPPAIFTRVSTYVPWI 219
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 62/192 (32%)
Query: 245 SVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLER--- 301
+V LG HD R+ Q I+V K I HE ++ PN+ +DI LL+LE+
Sbjct: 52 TVILGAHDV----------RKRESTQQKIKVEKQIIHESYNSVPNL-HDIMLLKLEKKVE 100
Query: 302 ----------PPRLNGTHLMSCCYYLAYADNGIS--------------------IDYN-- 329
P + H + C+ + G+ +DY
Sbjct: 101 LTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY 160
Query: 330 --SGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPG 386
Q+CVG + + GDSGGPL G G+VS G + P
Sbjct: 161 EYKFQVCVGSPTTLRAAFMGDSGGPLLCAGVAH----------GIVSYGHPDA---KPPA 207
Query: 387 VYSRTSYFLRWI 398
+++R S ++ WI
Sbjct: 208 IFTRVSTYVPWI 219
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 767 KGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVY 825
K Q+CVG + + GDSGGPL+ G GIVS G + P ++
Sbjct: 163 KFQVCVGSPTTLRAAFMGDSGGPLLCAGVAH----------GIVSYGHPDA---KPPAIF 209
Query: 826 TRTSYFLRWILAT 838
TR S ++ WI A
Sbjct: 210 TRVSTYVPWINAV 222
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 25/178 (14%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 134 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 193
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 194 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 251
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYT---RMTYFLQWILDHL-EDEVNIPEVH 673
++ R Y +G+VS+G C + G YT R+ ++Q ++D ED IPE +
Sbjct: 252 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWIQKVIDQFGEDFEEIPEEY 304
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 192 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 249
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDEWILDHL-EDEV 181
F++ R Y +G+VS+G E C + G YT + +WI + ++D ED
Sbjct: 250 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI------QKVIDQFGEDFE 298
Query: 182 NIPEVH 187
IPE +
Sbjct: 299 EIPEEY 304
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 150 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 204
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 205 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 240
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 241 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 286
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 32/185 (17%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 136 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 195
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 196 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 243
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI---LDHLDDHFV 407
P F++ R Y +G+VS G C G Y+ +WI +D + F
Sbjct: 244 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVIDQFGEDFE 298
Query: 408 RLGEQ 412
+ E+
Sbjct: 299 EIPEE 303
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 42/222 (18%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + +CLP + N+ +T G+ +S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTICLP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
R L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 248
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LEDE 171
++E
Sbjct: 245 TKEE 248
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C K + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGCARKGKY-GFYTHVFRLKKWI 250
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCARKGKYGFYTHVFRLKKWI 250
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CARKGKYGFYTHVFRLKKWI 250
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CARKGKYGFYTHVFRLKKWIQKVID 255
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 42/222 (18%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + +CLP + N+ +T G+ +S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTICLP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
R L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 248
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LEDE 171
++E
Sbjct: 245 TKEE 248
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG---------VTEDGR 563
DIALL+L++ E + Y+HPVCLP + V GWG V E
Sbjct: 147 RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQP 206
Query: 564 SSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSF 619
S L++ V + CKA + + C G K G+ DAC+GDSGGP +
Sbjct: 207 SVLQV--VNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPY 264
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYT---RMTYFLQWILDHL 663
++ R Y +G+VS+G C + G YT R+ ++Q ++D L
Sbjct: 265 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWIQKVIDRL 306
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPL 118
S + +PS+ L V + CKA + + C G K G+ D+C GDSGGP
Sbjct: 200 SVAEVQPSV-LQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 258
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYT---RMTYFLQWILDHL 168
S + R Y +G+VS+G E C + G YT R+ ++Q ++D L
Sbjct: 259 V----MKSPYNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVIDRL 306
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 62/177 (35%), Gaps = 55/177 (31%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWG-------LTEKKIPSHILLGVNQLVYDR 722
Y+ PVCLP L F+G+ V GWG + ++ +L VN + +R
Sbjct: 163 YIHPVCLPDKQTAAKLLHAGFKGR---VTGWGNRRETWTTSVAEVQPSVLQVVNLPLVER 219
Query: 723 YLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGK---- 778
+C A I C G K G+
Sbjct: 220 PVCKA--------------------------------STRIRITDNMFCAGYKPGEGKRG 247
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGP + ++ R Y +GIVS G C G YT +WI
Sbjct: 248 DACEGDSGGPFVMKSPYNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 299
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 287 EPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNG 346
+P++ + L +ERP + + DN Y G+ G G D+C G
Sbjct: 205 QPSVLQVVNLPLVERP-------VCKASTRIRITDNMFCAGYKPGE----GKRG-DACEG 252
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDHF 406
DSGGP S + R Y +G+VS G C G Y+ +WI +D
Sbjct: 253 DSGGPFV----MKSPYNNRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID--- 304
Query: 407 VRLG 410
RLG
Sbjct: 305 -RLG 307
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 38/126 (30%)
Query: 208 EQRIIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQISS--- 245
E RI+ G A++G PW + + ++P HC P +
Sbjct: 47 EGRIVEGQDAEVGLSPWQV-MLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTV 105
Query: 246 ----VRLGEHDANSDPDCSPDHRQCAPPVQDIRVV-KVISHEHFSGEPNMRNDIALLRLE 300
VR+G+H + V+ I ++ K+ H ++ + N+ DIALL+L+
Sbjct: 106 DDLLVRIGKHSRT----------RYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLK 155
Query: 301 RPPRLN 306
RP L+
Sbjct: 156 RPIELS 161
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--GRSSLELLA 570
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S+ L
Sbjct: 98 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSV-LQV 156
Query: 571 VQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDSAILA 625
V + CK + + C G GK G DAC+GDSGGP F++
Sbjct: 157 VNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN---- 211
Query: 626 RNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS+G C + G YT + +WI
Sbjct: 212 RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 244
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 64/172 (37%), Gaps = 51/172 (29%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAI 728
Y+ PVCLP + L+ ++G+ V GWG L E +L VN + +R +C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWGQPSVLQVVNLPIVERPVC--- 167
Query: 729 YERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNG 783
++ I C G GK G D+C G
Sbjct: 168 -----------------------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEG 197
Query: 784 DSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 198 DSGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 244
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 150 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 207
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 208 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 244
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 23/167 (13%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQ---DIRVVKVISHEHFSGEPNMRNDIAL 296
I+ ++L + A SD P C PD A +Q RV + + G+P++ + L
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNL 159
Query: 297 LRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMG 356
+ERP + T + DN Y + G G D+C GDSGGP
Sbjct: 160 PIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGGPFVMKS 207
Query: 357 SFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 249
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 494 QDIKVIQFLTHE--NYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q + V + + H N D DIALLRL +S N YV LP + RN N
Sbjct: 70 QYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRN--NSPC 127
Query: 552 IVAGWGVTE-DGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVGGKVGKDACKGD 608
+ GWG+T +G+ + L + C + + +S +C GG + C+GD
Sbjct: 128 YITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGD 187
Query: 609 SGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK-SENPGVYTRMTYFLQWI 659
SGGPL + + A+ G+ S+ G + P V+TR++ ++ WI
Sbjct: 188 SGGPLHCLVNGQYAVH------GVTSFVSRLGCNVTRKPTVFTRVSAYISWI 233
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 57/206 (27%)
Query: 234 PHCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN- 292
HC + E V +GEH+ N + Q + V K++ H +++ +
Sbjct: 44 AHCV-DRELTFRVVVGEHNLNQNNGTE----------QYVGVQKIVVHPYWNTDDVAAGY 92
Query: 293 DIALLRLERPPRLN-----------GTHLM--SCCYYLAYA---DNGI-----------S 325
DIALLRL + LN GT L S CY + NG +
Sbjct: 93 DIALLRLAQSVTLNSYVQLGVLPRAGTILRNNSPCYITGWGLTRTNGQLAQTLQQAYLPT 152
Query: 326 IDY-------------NSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLV 372
+DY + +C GG+ + C GDSGGPL + + A+ T + +
Sbjct: 153 VDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRL 212
Query: 373 SLGPASCGVYEIPGVYSRTSYFLRWI 398
C V P V++R S ++ WI
Sbjct: 213 -----GCNVTRKPTVFTRVSAYISWI 233
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 96 SSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYT 155
+S +C GG + C GDSGGPL + + A+ + + C T P V+T
Sbjct: 170 NSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLG-----CNVTRKPTVFT 224
Query: 156 RMTYFLQWI 164
R++ ++ WI
Sbjct: 225 RVSAYISWI 233
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTS 829
+C GG + C GDSGGPL + + ++ T + LG C + R P V+TR S
Sbjct: 173 VCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSF--VSRLG---CNVTRKPTVFTRVS 227
Query: 830 YFLRWI 835
++ WI
Sbjct: 228 AYISWI 233
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 510 SGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWGVTEDGRSSLEL 568
+GT D AL++L + P+ P T N+ T VAGWG +G S
Sbjct: 77 NGTGKDWALIKLAQ---------PINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRY 127
Query: 569 LAVQQKVFNSEE-CKARY-QELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILA 625
L F S+ C++ Y EL + +IC G G D C+GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYDTGGVDTCQGDSGGPMFRKDNADEWI-- 185
Query: 626 RNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+G+VS+G C K + GVYT ++ F
Sbjct: 186 ---QVGIVSWGEGCARKGKY-GVYTEVSTF 211
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 73 LLAVQQKVFNSEKCKARY-QKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISA 130
LL + C++ Y +L + +IC G G D+C GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYDTGGVDTCQGDSGGPMFRKDNADEWIQ- 186
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYF 160
+G+VS+G E C + GVYT ++ F
Sbjct: 187 ----VGIVSWG-EGCARKGKYGVYTEVSTF 211
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 769 QLCVGGKVGK-DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
++C G G D+C GDSGGP+ + D I +GIVS G C GVYT
Sbjct: 154 EICAGYDTGGVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWGEG-CARKGKYGVYTE 207
Query: 828 TSYF 831
S F
Sbjct: 208 VSTF 211
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 332 QMCVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
++C G + G D+C GDSGGP+ + D I +G+VS G C GVY+
Sbjct: 154 EICAGYDTGGVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWGEG-CARKGKYGVYTE 207
Query: 391 TSYF 394
S F
Sbjct: 208 VSTF 211
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q V +ENY + +ND+++++ + ++ V P+C P ++ +
Sbjct: 70 QTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAP---DPANDYVYRKSQC 126
Query: 554 AGWGVTEDGRSSLE--LLAVQQKVFNSEECKARY-QELDPSSQICVGGKVG---KDACKG 607
+GWG G L V + + C A Y + IC G +D+C+G
Sbjct: 127 SGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQG 186
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
DSGGPL+ S I + L+G+VS+G C S PGVY+R+ + WI D + +
Sbjct: 187 DSGGPLSVKDG--SGIFS---LVGIVSWGIGC--ASGYPGVYSRVGFHAGWITDTITNN 238
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 332 QMCVGGNVG---KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+C N G +DSC GDSGGPL+ S L+G+VS G Y PGVY
Sbjct: 169 MICATDNTGMTDRDSCQGDSGGPLSVKDG-----SGIFSLVGIVSWGIGCASGY--PGVY 221
Query: 389 SRTSYFLRWILDHLDDH 405
SR + WI D + ++
Sbjct: 222 SRVGFHAGWITDTITNN 238
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 103 GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQ 162
G +DSC GDSGGPL+ S L+G+VS+G + PGVY+R+ +
Sbjct: 177 GMTDRDSCQGDSGGPLSVKDG-----SGIFSLVGIVSWGIG--CASGYPGVYSRVGFHAG 229
Query: 163 WILDHLEDE 171
WI D + +
Sbjct: 230 WITDTITNN 238
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 751 LCTAIYERNGISIDTNKGQLCVGGKVG---KDSCNGDSGGPLMWMGSFDRSISARTYLLG 807
C A+Y + I D +C G +DSC GDSGGPL + S L+G
Sbjct: 155 FCDAVYTSDTIYDD----MICATDNTGMTDRDSCQGDSGGPLSV-----KDGSGIFSLVG 205
Query: 808 IVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
IVS G PGVY+R + WI T
Sbjct: 206 IVSWGIGCASGY--PGVYSRVGFHAGWITDT 234
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 34/214 (15%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWG--VTEDGRSSLELLAV 571
L++ + + + + +CLP +M + + + + G+G + D +L
Sbjct: 101 LKIRSKEGRCAQPSRTIQTICLP---SMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMT 157
Query: 572 QQKVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNY 628
K+ + EC+ Y + +C K D+C+GDSGGPL ++ R
Sbjct: 158 VVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQGRMT 211
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
L G+VS+G C K + PGVYTR+++FL WI H
Sbjct: 212 LTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSH 244
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 24/183 (13%)
Query: 493 VQDIKVIQFLTHENYTDSGT---KNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
Q V + HENY +GT NDIA+L L S G + LP N ++
Sbjct: 69 TQTANVDSYTMHENY-GAGTASYSNDIAILHLATSISLGGNIQAAVLPANN--NNDYAGT 125
Query: 550 NTIVAGWGVTEDGRSSLELLAVQQK--VFNSEECKARYQELDPSS----QICVGGKVGKD 603
+++GWG T DG ++L + + V + +C A + ++ ICV G
Sbjct: 126 TCVISGWGRT-DGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNT 184
Query: 604 -ACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS---ENPGVYTRMTYFLQWI 659
AC GDSGGPL + ++G+ S+ + G + + P VYTR++ +L WI
Sbjct: 185 GACNGDSGGPL-------NCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237
Query: 660 LDH 662
D+
Sbjct: 238 GDN 240
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 46/217 (21%)
Query: 629 LIGLVSYGPTCGTKSENPGVYT--------RMTYFLQWILDHLEDEVNIPEVHYVQPVCL 680
+ GL T GT++ N YT +Y + HL +++ +Q L
Sbjct: 57 IAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGG--NIQAAVL 114
Query: 681 PYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNK 740
P + ++ G +++GWG T+ G N L I +++ I + T
Sbjct: 115 PANN--NNDYAGTTCVISGWGRTD---------GTNNL-------PDILQKSSIPVITTA 156
Query: 741 GQLCLVYDRYLCTA-IYERNGISIDTNKGQLCVGGKVGKD-SCNGDSGGPLMWMGSFDRS 798
CTA + G +I N +CV G +CNGDSGGPL R
Sbjct: 157 ----------QCTAAMVGVGGANIWDN--HICVQDPAGNTGACNGDSGGPLNCPDGGTRV 204
Query: 799 ISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ ++ +VS G C + P VYTR S +L WI
Sbjct: 205 VGVTSW---VVSSGLGAC-LPDYPSVYTRVSAYLGWI 237
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 337 GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLR 396
GN G +CNGDSGGPL + ++ +VS G +C + + P VY+R S +L
Sbjct: 182 GNTG--ACNGDSGGPLNCPDGGTRVVGVTSW---VVSSGLGAC-LPDYPSVYTRVSAYLG 235
Query: 397 WILDH 401
WI D+
Sbjct: 236 WIGDN 240
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 80 VFNSEKCKARYQKLDPSS----QICVGGKVGKD-SCYGDSGGPLTWMGSFDSAISARNYL 134
V + +C A + ++ ICV G +C GDSGGPL + +++
Sbjct: 152 VITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSWV 211
Query: 135 IGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
VS G C + P VYTR++ +L WI D+
Sbjct: 212 ---VSSGLGAC-LPDYPSVYTRVSAYLGWIGDN 240
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG------VTEDGRSSLE 567
DIAL++L+K ++ Y+HPVCLP + V GWG T G+
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPS 158
Query: 568 LL-AVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDS 621
+L V + CK + + C G GK G DAC+GDSGGP F++
Sbjct: 159 VLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACQGDSGGPFVMKSPFNN 217
Query: 622 AILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS+G C + G YT + +WI
Sbjct: 218 ----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACQGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTTNV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACQGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACQGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 42/218 (19%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + +CLP + N+ +T G+ +S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTICLP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
R L G+VS+G C K + PGVYTR+++FL WI H
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSH 244
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 24/203 (11%)
Query: 467 VRLGEQNVITDPDCQNINGHEVC--APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKS 524
V LG+ N + D + + H + A P D + H + ND+ LLRL K
Sbjct: 52 VWLGKNNFLED---EPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKP 108
Query: 525 PEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECK 582
+ V P+ LP + +GWG T + +L V K+ +E+C
Sbjct: 109 ADITDVVKPITLPTEEPKL----GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD 164
Query: 583 ARYQELDPSSQICVGGKVGKD-ACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-CG 640
++ + +C G G C+ DSGGPL + L G+ S+GP CG
Sbjct: 165 KAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPL----------ICDGILQGITSWGPEPCG 214
Query: 641 TKSENPGVYTRMTYFLQWILDHL 663
+E P VYT++ F WI + +
Sbjct: 215 EPTE-PSVYTKLIKFSSWIRETM 236
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKD-SCYGDSGGPLTWMGSFDSAISA 130
+L V K+ +E C ++ + +C G G +C DSGGPL G
Sbjct: 149 DLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG-------- 200
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G+ S+GPE CG+ P VYT++ F WI + +
Sbjct: 201 --ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 768 GQLCVGGKVGKD-SCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
LC G G +C DSGGPL+ G L GI S GP CG P VYT
Sbjct: 174 AMLCAGEMDGGSYTCEHDSGGPLICDG----------ILQGITSWGPEPCGEPTEPSVYT 223
Query: 827 RTSYFLRWILAT 838
+ F WI T
Sbjct: 224 KLIKFSSWIRET 235
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 61/183 (33%), Gaps = 58/183 (31%)
Query: 268 PPVQDIRVVKVISHEHFS----------GEPNMRNDIALLRLERP--------------- 302
P Q V K I H F+ E + ND+ LLRL +P
Sbjct: 64 PSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTE 123
Query: 303 -PRLNGTHLMSC----------------CYYLAY-----ADNGISIDYNSGQMCVGG-NV 339
P+L T L S C L D + +C G +
Sbjct: 124 EPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDG 183
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
G +C DSGGPL G L G+ S GP CG P VY++ F WI
Sbjct: 184 GSYTCEHDSGGPLICDG----------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIR 233
Query: 400 DHL 402
+ +
Sbjct: 234 ETM 236
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKIGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKIGFYTHVFRLKKWI 250
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKIGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKIGFYTHVFRLKKWIQKVID 255
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 127 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 186
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 187 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 244
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 245 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 279
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 185 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 242
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 243 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 279
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 143 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 197
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 198 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 233
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 234 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 279
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 129 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 188
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 189 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 236
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 237 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 284
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 34/214 (15%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWGVTE--DGRSSLELLAV 571
L++ + + + + +CLP +M + + + + G+G + D +L
Sbjct: 101 LKIRSKEGRCAQPSRTIQTICLP---SMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMT 157
Query: 572 QQKVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNY 628
K+ + EC+ Y + +C K D+C+GDSGGPL ++ R
Sbjct: 158 VVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQGRMT 211
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
L G+VS+G C K + PGVYTR+++FL WI H
Sbjct: 212 LTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSH 244
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 98 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQP 157
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 158 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 215
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 216 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGPLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVIS----HEHFS-----GEPNM 290
I+ ++L + A SD P C PD A +Q +V E ++ G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 128 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 187
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 188 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 245
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 246 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 280
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 186 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 243
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 244 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 280
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 144 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 198
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 199 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 234
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 235 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 280
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 130 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 189
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G G D+C GDSGG
Sbjct: 190 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGG 237
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 238 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 285
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 130 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 189
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 190 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 247
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 248 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 282
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 188 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 245
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 246 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 282
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 146 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 200
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 201 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 236
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 237 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 282
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 132 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 191
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 192 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 239
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 240 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 287
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 128 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 187
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 188 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 245
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 246 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 280
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 186 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 243
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 244 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 280
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 144 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 198
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 199 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 234
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 235 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 280
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 130 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 189
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G G D+C GDSGG
Sbjct: 190 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGG 237
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 238 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 285
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 134 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 193
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 194 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 251
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 252 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 286
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 192 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 249
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 250 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 286
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 150 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 204
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 205 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 240
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 241 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 286
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 136 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 195
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 196 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 243
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 244 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 291
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V++ + H +Y +D+ LL+L + V P LP+ VAGWG
Sbjct: 72 VLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWG 129
Query: 558 -VTEDGRSSLELLAVQQKVFNSEECKAR-YQELDPSSQICVGGKVGKDACKGDSGGPLTW 615
V GR L V V + C R + + + ++ +D+CKGDSGGPL
Sbjct: 130 IVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVC 189
Query: 616 MGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
G + G+VS+G + PG+YTR+ + WI
Sbjct: 190 GGVLE----------GVVSWGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGG 787
I G D+ + L V DR C +G + +L +DSC GDSGG
Sbjct: 130 IVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITE----RLMCAESNRRDSCKGDSGG 185
Query: 788 PLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
PL+ G + G+VS G CG + PG+YTR + + WI
Sbjct: 186 PLVCGGVLE----------GVVSWGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+DSC GDSGGPL G + G+VS+G CG + PG+YTR+ + WI
Sbjct: 176 RDSCKGDSGGPLVCGGVLE----------GVVSWGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
MC N +DSC GDSGGPL G + G+VS G CG + PG+Y+R +
Sbjct: 169 MCAESNR-RDSCKGDSGGPLVCGGVLE----------GVVSWGSRVCGNRKKPGIYTRVA 217
Query: 393 YFLRWI 398
+ WI
Sbjct: 218 SYAAWI 223
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 128 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 187
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 188 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 245
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 246 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 280
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 186 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 243
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 244 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 280
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 144 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 198
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 199 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 234
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 235 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 280
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 130 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 189
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 190 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 237
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 238 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 285
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGKGC-DRDGKYGFYTHVFRLKKWI 250
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G + C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-KGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGKG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-KGCDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 128 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 187
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 188 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 245
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 246 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 280
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 186 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 243
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 244 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 280
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 144 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 198
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 199 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 234
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 235 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 280
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 130 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 189
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 190 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 237
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 238 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 285
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 130 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 189
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GDSGGP F
Sbjct: 190 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPF 247
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 248 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 282
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 188 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 245
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 246 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 282
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 146 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 200
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 201 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 236
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 237 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 282
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 132 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 191
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 192 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 239
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 240 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 287
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKFGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKFGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKFGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKFGFYTHVFRLKKWIQKVID 255
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 512 TKNDIALLRLEKSPEW----NGYVHPVCLPY-GNAMTRNFENENTIVAGWGVTEDG---- 562
+ +D+ L+RL+K + + +V P+CLP G+ + + +AGWG ++
Sbjct: 122 SDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQ---IAGWGHLDENVSGY 178
Query: 563 ----RSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDSGGPLTWMG 617
R +L L K + E A ++ P+ +C G DAC+GDSGGPL
Sbjct: 179 SSSLREALVPLVADHKCSSPEVYGA---DISPN-MLCAGYFDCKSDACQGDSGGPLACEK 234
Query: 618 SFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ YL G++S+G CG + PGVYTR+ ++ WI D +
Sbjct: 235 N------GVAYLYGIISWGDGCG-RLHKPGVYTRVANYVDWINDRIR 274
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 38/164 (23%)
Query: 673 HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
+VQP+CLP G + G +AGWG ++ + +
Sbjct: 143 QFVQPICLPE-PGSTFP-AGHKCQIAGWGHLDENV------------------------S 176
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMW 791
G S + + LV D + C++ E G I N LC G D+C GDSGGPL
Sbjct: 177 GYSSSLREALVPLVAD-HKCSSP-EVYGADISPN--MLCAGYFDCKSDACQGDSGGPLAC 232
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ YL GI+S G CG L PGVYTR + ++ WI
Sbjct: 233 ------EKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWI 269
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
D+C GDSGGPL + YL G++S+G + CG+ PGVYTR+ ++ WI D
Sbjct: 220 DACQGDSGGPLA------CEKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWINDR 272
Query: 168 LE 169
+
Sbjct: 273 IR 274
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 327 DYNSGQMCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
D + +C G + D+C GDSGGPL + YL G++S G CG P
Sbjct: 204 DISPNMLCAGYFDCKSDACQGDSGGPLA------CEKNGVAYLYGIISWGDG-CGRLHKP 256
Query: 386 GVYSRTSYFLRWILDHL 402
GVY+R + ++ WI D +
Sbjct: 257 GVYTRVANYVDWINDRI 273
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 510 SGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWGVTEDGRSSLEL 568
+GT D AL++L + P+ P T N+ T VAGWG +G S
Sbjct: 77 NGTGKDWALIKLAQ---------PINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRY 127
Query: 569 LAVQQKVFNSEE-CKARY-QELDPSSQICVG--GKVGKDACKGDSGGPLTWMGSFDSAIL 624
L F S+ C++ Y EL + +IC G G D C+GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWI- 186
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+G+VS+G C + PGVYT ++ F
Sbjct: 187 ----QVGIVSWGYGCA-RPGYPGVYTEVSTF 212
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 73 LLAVQQKVFNSEKCKARY-QKLDPSSQICVG--GKVGKDSCYGDSGGPLTWMGSFDSAIS 129
LL + C++ Y +L + +IC G G D+C GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ 187
Query: 130 ARNYLIGLVSYGPEDCGKTENPGVYTRMTYF 160
+G+VS+G C + PGVYT ++ F
Sbjct: 188 -----VGIVSWG-YGCARPGYPGVYTEVSTF 212
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 769 QLCVG--GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
++C G G D+C GDSGGP+ + D I +GIVS G C PGVYT
Sbjct: 154 EICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWGYG-CARPGYPGVYT 207
Query: 827 RTSYF 831
S F
Sbjct: 208 EVSTF 212
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 332 QMCVG--GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
++C G G D+C GDSGGP+ + D I +G+VS G C PGVY+
Sbjct: 154 EICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWG-YGCARPGYPGVYT 207
Query: 390 RTSYF 394
S F
Sbjct: 208 EVSTF 212
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 512 TKNDIALLRLEKSPEW----NGYVHPVCLPY-GNAMTRNFENENTIVAGWGVTEDG---- 562
+ +D+ L+RL+K + + +V P+CLP G+ + + +AGWG ++
Sbjct: 87 SDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQ---IAGWGHLDENVSGY 143
Query: 563 ----RSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDSGGPLTWMG 617
R +L L K + E A ++ P+ +C G DAC+GDSGGPL
Sbjct: 144 SSSLREALVPLVADHKCSSPEVYGA---DISPN-MLCAGYFDCKSDACQGDSGGPLACEK 199
Query: 618 SFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ YL G++S+G CG + PGVYTR+ ++ WI D +
Sbjct: 200 N------GVAYLYGIISWGDGCG-RLHKPGVYTRVANYVDWINDRIR 239
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 38/164 (23%)
Query: 673 HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
+VQP+CLP G + G +AGWG ++ + +
Sbjct: 108 QFVQPICLPE-PGSTFP-AGHKCQIAGWGHLDENV------------------------S 141
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMW 791
G S + + LV D + C++ E G I N LC G D+C GDSGGPL
Sbjct: 142 GYSSSLREALVPLVAD-HKCSSP-EVYGADISPN--MLCAGYFDCKSDACQGDSGGPLAC 197
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ YL GI+S G CG L PGVYTR + ++ WI
Sbjct: 198 ------EKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWI 234
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILD 166
D+C GDSGGPL + YL G++S+G + CG+ PGVYTR+ ++ WI D
Sbjct: 184 SDACQGDSGGPLA------CEKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWIND 236
Query: 167 HLE 169
+
Sbjct: 237 RIR 239
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 327 DYNSGQMCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
D + +C G + D+C GDSGGPL + YL G++S G CG P
Sbjct: 169 DISPNMLCAGYFDCKSDACQGDSGGPLA------CEKNGVAYLYGIISWGDG-CGRLHKP 221
Query: 386 GVYSRTSYFLRWILDHL 402
GVY+R + ++ WI D +
Sbjct: 222 GVYTRVANYVDWINDRI 238
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 28/167 (16%)
Query: 512 TKNDIALLRLEKSPEW----NGYVHPVCLPY-GNAMTRNFENENTIVAGWGVTEDG---- 562
+ +D+ L+RL+K + + +V P+CLP G+ + + +AGWG ++
Sbjct: 87 SDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQ---IAGWGHLDENVSGY 143
Query: 563 ----RSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDSGGPLTWMG 617
R +L L K + E A ++ P+ +C G DAC+GDSGGPL
Sbjct: 144 SSSLREALVPLVADHKCSSPEVYGA---DISPN-MLCAGYFDCKSDACQGDSGGPLACEK 199
Query: 618 SFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ YL G++S+G CG + PGVYTR+ ++ WI D +
Sbjct: 200 N------GVAYLYGIISWGDGCG-RLHKPGVYTRVANYVDWINDRIR 239
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 38/164 (23%)
Query: 673 HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
+VQP+CLP G + G +AGWG ++ + +
Sbjct: 108 QFVQPICLPE-PGSTFP-AGHKCQIAGWGHLDENV------------------------S 141
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMW 791
G S + + LV D + C++ E G I N LC G D+C GDSGGPL
Sbjct: 142 GYSSSLREALVPLVAD-HKCSSP-EVYGADISPN--MLCAGYFDCKSDACQGDSGGPLAC 197
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ YL GI+S G CG L PGVYTR + ++ WI
Sbjct: 198 ------EKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWI 234
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILD 166
D+C GDSGGPL + YL G++S+G + CG+ PGVYTR+ ++ WI D
Sbjct: 184 SDACQGDSGGPLA------CEKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWIND 236
Query: 167 HLE 169
+
Sbjct: 237 RIR 239
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 327 DYNSGQMCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
D + +C G + D+C GDSGGPL + YL G++S G CG P
Sbjct: 169 DISPNMLCAGYFDCKSDACQGDSGGPLA------CEKNGVAYLYGIISWGDG-CGRLHKP 221
Query: 386 GVYSRTSYFLRWILDHL 402
GVY+R + ++ WI D +
Sbjct: 222 GVYTRVANYVDWINDRI 238
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 510 SGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWGVTEDGRSSLEL 568
+GT D AL++L + P+ P T N+ T VAGWG +G S
Sbjct: 77 NGTGKDWALIKLAQ---------PINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRY 127
Query: 569 LAVQQKVFNSEE-CKARY-QELDPSSQICVG--GKVGKDACKGDSGGPLTWMGSFDSAIL 624
L F S+ C++ Y EL + +IC G G D C+GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWI- 186
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+G+VS+G C + PGVYT ++ F
Sbjct: 187 ----QVGIVSWGYGCA-RPGYPGVYTEVSTF 212
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 73 LLAVQQKVFNSEKCKARY-QKLDPSSQICVG--GKVGKDSCYGDSGGPLTWMGSFDSAIS 129
LL + C++ Y +L + +IC G G D+C GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ 187
Query: 130 ARNYLIGLVSYGPEDCGKTENPGVYTRMTYF 160
+G+VS+G C + PGVYT ++ F
Sbjct: 188 -----VGIVSWG-YGCARPGYPGVYTEVSTF 212
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 769 QLCVG--GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
++C G G D+C GDSGGP+ + D I +GIVS G C PGVYT
Sbjct: 154 EICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWGYG-CARPGYPGVYT 207
Query: 827 RTSYF 831
S F
Sbjct: 208 EVSTF 212
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 332 QMCVG--GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
++C G G D+C GDSGGP+ + D I +G+VS G C PGVY+
Sbjct: 154 EICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWG-YGCARPGYPGVYT 207
Query: 390 RTSYF 394
S F
Sbjct: 208 EVSTF 212
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 264 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 323
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 324 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 381
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 382 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 415
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 321 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 378
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 379 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 415
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 57/178 (32%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLG-------VNQLVYDR 722
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G VN + +R
Sbjct: 279 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 335
Query: 723 YLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVG 777
+C ++ I C G GK G
Sbjct: 336 PVC--------------------------------KDSTRIRITDNMFCAGYKPDEGKRG 363
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 364 -DACEGDSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 415
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 265 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 324
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 325 LQVVNLPIVERPVCKDSTRIR-------ITDNMFCAGYKPDEGKRG-----DACEGDSGG 372
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 373 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 420
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGCRDDGKY-GFYTHVFRLKKWI 250
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCRDDGKYGFYTHVFRLKKWI 250
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CRDDGKYGFYTHVFRLKKWI 250
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CRDDGKYGFYTHVFRLKKWIQKVID 255
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG-VTEDGRSSLE----- 567
DIAL++L+K ++ Y+HPVCLP + V GWG + E +++
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLRETWTTNINEIQPS 158
Query: 568 -LLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDS 621
L V + CK + + C G GK G DAC+GDSGGP F++
Sbjct: 159 VLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN 217
Query: 622 AILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS+G C + G YT + +WI
Sbjct: 218 ----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 66/178 (37%), Gaps = 57/178 (32%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWG-LTE------KKIPSHILLGVNQLVYDR 722
Y+ PVCLP + L+ ++G+ V GWG L E +I +L VN + +R
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLRETWTTNINEIQPSVLQVVNLPIVER 170
Query: 723 YLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVG 777
+C ++ I C G GK G
Sbjct: 171 PVC--------------------------------KDSTRIRITDNMFCAGYKPDEGKRG 198
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 199 -DACEGDSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
D+C GDSGGP F++ R Y +G+VS G C G Y+ +WI
Sbjct: 199 DACEGDSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKV 253
Query: 402 LD 403
+D
Sbjct: 254 ID 255
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRS 564
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+
Sbjct: 129 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 188
Query: 565 SLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSF 619
S+ L V + CK + + C G GK G DAC+GD+GGP F
Sbjct: 189 SV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKSPF 246
Query: 620 DSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
++ R Y +G+VS+G C + G YT + +WI
Sbjct: 247 NN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 281
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GD+GGP
Sbjct: 187 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKS 244
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 245 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 281
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 145 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 199
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 200 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 235
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+GGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 236 AGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 281
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 131 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 190
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GD+GG
Sbjct: 191 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDAGG 238
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 239 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 286
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 100 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 159
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GD+GGP F+
Sbjct: 160 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKSPFN 217
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 218 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 251
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GD+GGP
Sbjct: 157 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKS 214
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 215 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 251
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 115 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 169
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 170 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 205
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+GGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 206 AGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 251
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 101 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 160
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GD+GG
Sbjct: 161 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDAGG 208
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 209 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 256
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Query: 491 PPVQDIKVIQFLTHENYTDS--GTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN 548
P +KV + + H+++ + NDIALL+L + CLP + N N
Sbjct: 67 PGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPN--N 124
Query: 549 ENTIVAGWGVTEDGRSSLELLAVQQK-VFNSEECK--ARYQELDPSSQICVGGKVGKDAC 605
V GWG + +S ++L Q V + C + ++ IC GG +C
Sbjct: 125 YVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSC 184
Query: 606 KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK-SENPGVYTRMTYFLQWI 659
GDSGGPL G+ + + G+VS+G + G P V+TR++ ++ WI
Sbjct: 185 NGDSGGPLNCQGAN-----GQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWI 234
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 97/250 (38%), Gaps = 78/250 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRT--------------------PHCATNPEQISSVRLGE 250
++GG A+ S PW + Y + HC ++ + V LG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS-SRTYRVVLGR 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHF-SGEPNMRNDIALLRLERPPRLNGTH 309
H +++ P ++V K++ H+ + S + + NDIALL+L P L
Sbjct: 60 HSLSTNE----------PGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKI 109
Query: 310 LMSC-------------CYYLAYA---DNGIS-----------IDY-------------N 329
+ C CY + NG S +DY
Sbjct: 110 QLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVK 169
Query: 330 SGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPA-SCGVYEIPGVY 388
+ +C GG+ SCNGDSGGPL G+ + + + G+VS G + C Y P V+
Sbjct: 170 TNMICAGGDGIISSCNGDSGGPLNCQGA-----NGQWQVHGIVSFGSSLGCNYYHKPSVF 224
Query: 389 SRTSYFLRWI 398
+R S ++ WI
Sbjct: 225 TRVSNYIDWI 234
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 706 KIPSHILLGVNQLVYDRYLCTAI----YERNGISIDT-NKGQLCLVYDRYLCTAIYERNG 760
KI L ++ + Y+C + NG S D +GQL LV D C+ G
Sbjct: 108 KIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQL-LVVDYATCSKPGWW-G 165
Query: 761 ISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPST-CGML 819
++ TN +C GG SCNGDSGGPL G+ + + + GIVS G S C
Sbjct: 166 STVKTN--MICAGGDGIISSCNGDSGGPLNCQGA-----NGQWQVHGIVSFGSSLGCNYY 218
Query: 820 RIPGVYTRTSYFLRWI 835
P V+TR S ++ WI
Sbjct: 219 HKPSVFTRVSNYIDWI 234
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 96 SSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPE-DCGKTENPGVY 154
++ IC GG SC GDSGGPL G+ + + + G+VS+G C P V+
Sbjct: 170 TNMICAGGDGIISSCNGDSGGPLNCQGA-----NGQWQVHGIVSFGSSLGCNYYHKPSVF 224
Query: 155 TRMTYFLQWI 164
TR++ ++ WI
Sbjct: 225 TRVSNYIDWI 234
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 510 SGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGWGVTEDGRSSLEL 568
+GT D AL++L + P+ P T N+ T VAGWG +G S
Sbjct: 77 NGTGKDWALIKLAQ---------PINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRY 127
Query: 569 LAVQQKVFNSEE-CKARY-QELDPSSQICVG--GKVGKDACKGDSGGPLTWMGSFDSAIL 624
L F S+ C++ Y EL + +IC G G D C+GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDPCQGDSGGPMFRKDNADEWI- 186
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+G+VS+G C + PGVYT ++ F
Sbjct: 187 ----QVGIVSWGYGCA-RPGYPGVYTEVSTF 212
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 73 LLAVQQKVFNSEKCKARY-QKLDPSSQICVG--GKVGKDSCYGDSGGPLTWMGSFDSAIS 129
LL + C++ Y +L + +IC G G D C GDSGGP+ + D I
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDPCQGDSGGPMFRKDNADEWIQ 187
Query: 130 ARNYLIGLVSYGPEDCGKTENPGVYTRMTYF 160
+G+VS+G C + PGVYT ++ F
Sbjct: 188 -----VGIVSWG-YGCARPGYPGVYTEVSTF 212
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYF 831
G D C GDSGGP+ + D I +GIVS G C PGVYT S F
Sbjct: 164 GVDPCQGDSGGPMFRKDNADEWIQ-----VGIVSWGYG-CARPGYPGVYTEVSTF 212
Score = 35.8 bits (81), Expect = 0.095, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 332 QMCVG--GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
++C G G D C GDSGGP+ + D I +G+VS G C PGVY+
Sbjct: 154 EICAGYPDTGGVDPCQGDSGGPMFRKDNADEWIQ-----VGIVSWG-YGCARPGYPGVYT 207
Query: 390 RTSYF 394
S F
Sbjct: 208 EVSTF 212
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 42/222 (18%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTIALP-------SMYNDPQFGTSCEITGFGKEQSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
R L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 248
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LEDE 171
++E
Sbjct: 245 TKEE 248
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GD+GGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GD+GGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+GGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 AGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GD+GG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDAGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 148 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 207
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GD+GGP F+
Sbjct: 208 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKSPFN 265
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 266 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 299
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GD+GGP
Sbjct: 205 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDAGGPFVMKS 262
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 263 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 299
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 163 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 217
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 218 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 253
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+GGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 254 AGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 299
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 149 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 208
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GD+GG
Sbjct: 209 LQVVNLPIVERPVCKDSTRIR-------ITDNMFCAGYKPDEGKRG-----DACEGDAGG 256
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 257 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 304
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 42/222 (18%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ +S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTISLP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
R L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 248
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LEDE 171
++E
Sbjct: 245 TKEE 248
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSAGAGC-DRDGKYGFYTHVFRLKKWI 250
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G + C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSAG-AGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G A C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSAG-AGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS G C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSAG-AGCDRDGKYGFYTHVFRLKKWI 250
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 494 QDIKVIQFLTHE--NYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q + V + + H N D DIALLRL +S N YV LP + N N
Sbjct: 70 QYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILAN--NSPC 127
Query: 552 IVAGWGVTE-DGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVGGKVGKDACKGD 608
+ GWG+T +G+ + L + C + + +S +C GG + C+GD
Sbjct: 128 YITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGD 187
Query: 609 SGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK-SENPGVYTRMTYFLQWI 659
SGGPL + + A+ G+ S+ G + P V+TR++ ++ WI
Sbjct: 188 SGGPLHCLVNGQYAVH------GVTSFVSRLGCNVTRKPTVFTRVSAYISWI 233
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 57/206 (27%)
Query: 234 PHCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN- 292
HC + E V +GEH+ N + Q + V K++ H +++ +
Sbjct: 44 AHCV-DRELTFRVVVGEHNLNQNDGTE----------QYVGVQKIVVHPYWNTDDVAAGY 92
Query: 293 DIALLRLERPPRLN-----------GTHLM--SCCYYLAYA---DNGI-----------S 325
DIALLRL + LN GT L S CY + NG +
Sbjct: 93 DIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPT 152
Query: 326 IDY-------------NSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLV 372
+DY + +C GG+ + C GDSGGPL + + A+ T + +
Sbjct: 153 VDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRL 212
Query: 373 SLGPASCGVYEIPGVYSRTSYFLRWI 398
C V P V++R S ++ WI
Sbjct: 213 -----GCNVTRKPTVFTRVSAYISWI 233
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 96 SSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYT 155
+S +C GG + C GDSGGPL + + A+ + + C T P V+T
Sbjct: 170 NSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLG-----CNVTRKPTVFT 224
Query: 156 RMTYFLQWI 164
R++ ++ WI
Sbjct: 225 RVSAYISWI 233
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTS 829
+C GG + C GDSGGPL + + ++ T + LG C + R P V+TR S
Sbjct: 173 VCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSF--VSRLG---CNVTRKPTVFTRVS 227
Query: 830 YFLRWI 835
++ WI
Sbjct: 228 AYISWI 233
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSAGAGC-DRDGKYGFYTHVFRLKKWI 250
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G + C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSAG-AGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G A C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSAG-AGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS G C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSAG-AGCDRDGKYGFYTHVFRLKKWI 250
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 494 QDIKVIQFLTHE--NYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
Q + V + + H N D DIALLRL +S N YV LP + N N
Sbjct: 70 QYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILAN--NSPC 127
Query: 552 IVAGWGVTE-DGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVGGKVGKDACKGD 608
+ GWG+T +G+ + L + C + + +S +C GG + C+GD
Sbjct: 128 YITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGD 187
Query: 609 SGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK-SENPGVYTRMTYFLQWI 659
SGGPL + + A+ G+ S+ G + P V+TR++ ++ WI
Sbjct: 188 SGGPLHCLVNGQYAVH------GVTSFVSRLGCNVTRKPTVFTRVSAYISWI 233
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 57/206 (27%)
Query: 234 PHCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN- 292
HC + E V +GEH+ N + Q + V K++ H +++ +
Sbjct: 44 AHCV-DRELTFRVVVGEHNLNQNNGTE----------QYVGVQKIVVHPYWNTDDVAAGY 92
Query: 293 DIALLRLERPPRLN-----------GTHLM--SCCYYLAYA---DNGI-----------S 325
DIALLRL + LN GT L S CY + NG +
Sbjct: 93 DIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPT 152
Query: 326 IDY-------------NSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLV 372
+DY + +C GG+ + C GDSGGPL + + A+ T + +
Sbjct: 153 VDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRL 212
Query: 373 SLGPASCGVYEIPGVYSRTSYFLRWI 398
C V P V++R S ++ WI
Sbjct: 213 -----GCNVTRKPTVFTRVSAYISWI 233
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 96 SSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYT 155
+S +C GG + C GDSGGPL + + A+ + + C T P V+T
Sbjct: 170 NSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLG-----CNVTRKPTVFT 224
Query: 156 RMTYFLQWI 164
R++ ++ WI
Sbjct: 225 RVSAYISWI 233
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTS 829
+C GG + C GDSGGPL + + ++ T + LG C + R P V+TR S
Sbjct: 173 VCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSF--VSRLG---CNVTRKPTVFTRVS 227
Query: 830 YFLRWI 835
++ WI
Sbjct: 228 AYISWI 233
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 84 EKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGP 142
E C+ Y L + +C G + GKD+C GDSGGPL G F G+VSYG
Sbjct: 147 EVCQGAYNGLPAKTTLCAGVLEGGKDTCVGDSGGPLICNGQFQ----------GIVSYGA 196
Query: 143 EDCGKTENPGVYTRMTYFLQWI 164
CG+ PG+YT + + WI
Sbjct: 197 HSCGQGPKPGIYTNVFDYTDWI 218
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG-VTEDGRSSLEL-LAVQ 572
DI L++L+K + ++ P+ LP + + GWG +T + ++
Sbjct: 85 DIMLIKLDKPISNSKHIAPLSLPSNPPSVGSV----CRIMGWGSITIPNETYPDVPYCAN 140
Query: 573 QKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIG 631
+ + E C+ Y L + +C G + GKD C GDSGGPL G F G
Sbjct: 141 INLVDYEVCQGAYNGLPAKTTLCAGVLEGGKDTCVGDSGGPLICNGQFQ----------G 190
Query: 632 LVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+VSYG + PG+YT + + WI
Sbjct: 191 IVSYGAHSCGQGPKPGIYTNVFDYTDWI 218
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 746 VYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTY 804
+ D +C Y NG+ T LC G + GKD+C GDSGGPL+ G F
Sbjct: 143 LVDYEVCQGAY--NGLPAKTT---LCAGVLEGGKDTCVGDSGGPLICNGQFQ-------- 189
Query: 805 LLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G +CG PG+YT + WI
Sbjct: 190 --GIVSYGAHSCGQGPKPGIYTNVFDYTDWI 218
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGPL G F G+VS G SCG PG+Y+ + WI
Sbjct: 170 GKDTCVGDSGGPLICNGQFQ----------GIVSYGAHSCGQGPKPGIYTNVFDYTDWI 218
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 506 NYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--- 561
N+ ++ +N IAL++L+K ++ Y+HPVCLP + V GWG ++
Sbjct: 91 NWRENLDRN-IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWT 149
Query: 562 -----GRSSLELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGG 611
G+ S+ L V + CK + + C G GK G DAC+GDSGG
Sbjct: 150 ANVGKGQPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGG 207
Query: 612 PLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
P F++ R Y +G+VS+G C + G YT + +WI
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLP----YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+C GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 42/222 (18%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTIALP-------SMYNDPQFGTSCEITGFGKEQSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GD+GGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDAGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
R L G+VS+G C K + PGVYTR+++FL WI H ++E
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKEE 248
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GD+GGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDAGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LEDE 171
++E
Sbjct: 245 TKEE 248
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GD+GGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDAGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GD+GGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDAGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+ DSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEADSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C DSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEADSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C D
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEAD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 250
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G G D+C DSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEADSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 25/211 (11%)
Query: 462 SPDHIVRLGEQNVITDPD-CQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLR 520
S ++ + LG N+ D + Q ++ E P ++ +++ H D +D+ LLR
Sbjct: 44 SDNYQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLE--NHTRQADEDYSHDLMLLR 101
Query: 521 L-EKSPEWNGYVHPVCLPYGNAMTRNFENENTIVA-GWGVTEDGRSSL--ELLAVQQKVF 576
L E + V V LP T E +T +A GWG E S +L V K+
Sbjct: 102 LTEPADTITDAVKVVELP-----TEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKIL 156
Query: 577 NSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSY 635
++ECK + + +CVG + GKD C GDSGGPL + L G+ S+
Sbjct: 157 PNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPL----------MCDGVLQGVTSW 206
Query: 636 GPT-CGTKSENPGVYTRMTYFLQWILDHLED 665
G CGT ++ P V R+ +++WI D + +
Sbjct: 207 GYVPCGTPNK-PSVAVRVLSYVKWIEDTIAE 236
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
+L V K+ +++CK + + +CVG + GKD+C GDSGGPL G
Sbjct: 147 DLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG-------- 198
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
L G+ S+G CG P V R+ +++WI D + +
Sbjct: 199 --VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIAE 236
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
LCVG + GKD+C GDSGGPLM G L G+ S G CG P V R
Sbjct: 174 LCVGHLEGGKDTCVGDSGGPLMCDG----------VLQGVTSWGYVPCGTPNKPSVAVRV 223
Query: 829 SYFLRWILAT 838
+++WI T
Sbjct: 224 LSYVKWIEDT 233
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 333 MCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
+CVG GKD+C GDSGGPL G L G+ S G CG P V R
Sbjct: 174 LCVGHLEGGKDTCVGDSGGPLMCDG----------VLQGVTSWGYVPCGTPNKPSVAVRV 223
Query: 392 SYFLRWILD 400
+++WI D
Sbjct: 224 LSYVKWIED 232
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRS--SLELLAV 571
ND+ LL L + + G V + LP + +GWG T S +L V
Sbjct: 93 NDLMLLHLSEPADITGGVKVIDLPTKEPKV----GSTCLASGWGSTNPSEMVVSHDLQCV 148
Query: 572 QQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLI 630
+ ++E+C Y++ +C G + GKD C GDSGGPL + L
Sbjct: 149 NIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPL----------ICDGVLQ 198
Query: 631 GLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
G+ S G T K + P +Y ++ F WI
Sbjct: 199 GITSGGATPCAKPKTPAIYAKLIKFTSWI 227
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 70 SLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAI 128
S +L V + ++EKC Y+ +C G + GKD+C GDSGGPL G
Sbjct: 142 SHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG------ 195
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+ S G C K + P +Y ++ F WI
Sbjct: 196 ----VLQGITSGGATPCAKPKTPAIYAKLIKFTSWI 227
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 53/146 (36%), Gaps = 43/146 (29%)
Query: 692 GKDTIVAGWGLT--EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYDR 749
G + +GWG T + + SH L VN + C Y+ N V D
Sbjct: 123 GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDN-------------VTDV 169
Query: 750 YLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIV 809
LC E GKD+C GDSGGPL+ G L GI
Sbjct: 170 MLCAGEMEG------------------GKDTCAGDSGGPLICDG----------VLQGIT 201
Query: 810 SLGPSTCGMLRIPGVYTRTSYFLRWI 835
S G + C + P +Y + F WI
Sbjct: 202 SGGATPCAKPKTPAIYAKLIKFTSWI 227
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 318 AYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPA 377
Y DN + +G+M GKD+C GDSGGPL G L G+ S G
Sbjct: 161 TYKDNVTDVMLCAGEM----EGGKDTCAGDSGGPLICDG----------VLQGITSGGAT 206
Query: 378 SCGVYEIPGVYSRTSYFLRWI 398
C + P +Y++ F WI
Sbjct: 207 PCAKPKTPAIYAKLIKFTSWI 227
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 42/221 (19%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ +S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTISLP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
R L G+VS+G C K + PGVYTR+++FL WI H ++
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKE 247
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LED 170
++
Sbjct: 245 TKE 247
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Query: 402 LDD 404
+
Sbjct: 245 TKE 247
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR--SSLELLAV 571
+D+ LLRL K + V P+ LP + +GWG R +L V
Sbjct: 95 DDLMLLRLSKPADITDVVKPIALPTKEPK----PGSKCLASGWGSITPTRWQKPDDLQCV 150
Query: 572 QQKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLI 630
+ +E C Y + +C G G KD C+ DSGGPL + L
Sbjct: 151 FITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPL----------ICDGILQ 200
Query: 631 GLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
G SYGP K P +YT + F WI D +
Sbjct: 201 GTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISA 130
+L V + +E C Y + +C G G KD+C DSGGPL G
Sbjct: 146 DLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG-------- 197
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
L G SYGP CGK P +YT + F WI D +
Sbjct: 198 --ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 752 CTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSL 811
C +Y + + G++ GG GKD+C DSGGPL+ G L G S
Sbjct: 160 CAKVYLQKVTDVMLCAGEM--GG--GKDTCRDDSGGPLICDG----------ILQGTTSY 205
Query: 812 GPSTCGMLRIPGVYTRTSYFLRWILAT 838
GP CG +P +YT F WI T
Sbjct: 206 GPVPCGKPGVPAIYTNLIKFNSWIKDT 232
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C DSGGPL G L G S GP CG +P +Y+ F WI
Sbjct: 181 GKDTCRDDSGGPLICDG----------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIK 230
Query: 400 DHL 402
D +
Sbjct: 231 DTM 233
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 103 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 162
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICV-----GGKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C GK G DAC+GDSGGP F+
Sbjct: 163 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAYYKPDEGKRG-DACEGDSGGPFVMKSPFN 220
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 221 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 254
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 103 GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQ 162
GK G D+C GDSGGP F++ R Y +G+VS+G E C + G YT + +
Sbjct: 199 GKRG-DACEGDSGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKK 252
Query: 163 WI 164
WI
Sbjct: 253 WI 254
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 66/173 (38%), Gaps = 47/173 (27%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLG-------VNQLVYDR 722
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G VN + +R
Sbjct: 118 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANVGKGQPSVLQVVNLPIVER 174
Query: 723 YLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCN 782
+C ++ I C Y GK G D+C
Sbjct: 175 PVC-----KDSTRIRITDNMFCAYYK----------------------PDEGKRG-DACE 206
Query: 783 GDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GDSGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 207 GDSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWI 254
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 68/178 (38%), Gaps = 39/178 (21%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 104 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 163
Query: 291 RNDIALLRLERP-----PRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCN 345
+ L +ERP R+ T M C YY D G D+C
Sbjct: 164 LQVVNLPIVERPVCKDSTRIRITDNMFCAYY--KPDEGKR---------------GDACE 206
Query: 346 GDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
GDSGGP F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 207 GDSGGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID 259
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 98/221 (44%), Gaps = 42/221 (19%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 68 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 115
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ +S + L +Q
Sbjct: 116 LKIRSKEGRCAQPSRTIQTISLP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 168
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 169 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 222
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
R L G+VS+G C K + PGVYTR+++FL WI H ++
Sbjct: 223 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTKE 262
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 207 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 259
Query: 168 LED 170
++
Sbjct: 260 TKE 262
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 207 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 259
Query: 402 LDD 404
+
Sbjct: 260 TKE 262
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 207 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 256
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DAC+ DSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEPDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G C + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 250
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C DSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEPDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+C D
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DACEPD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 250
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 29/173 (16%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G G D+C DSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDE----GKRG-DACEPDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 255
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ +S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTIALP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
R L G+VS+G C K + PGVYTR+++FL WI H
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSH 244
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 42/220 (19%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ +S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTIALP-------SMYNDPQFGTSCEITGFGKENSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
R L G+VS+G C K + PGVYTR+++FL WI H +
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTK 246
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LE 169
+
Sbjct: 245 TK 246
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 42/220 (19%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIAL 518
K D+IV LG + + N G +V + H++Y+ NDIAL
Sbjct: 53 KKEDYIVYLGRSRLNS-----NTQGE-------MKFEVENLILHKDYSADTLAHHNDIAL 100
Query: 519 LRLE----KSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGR-SSLELLAVQQ 573
L++ + + + + + LP + N+ +T G+ S + L +Q
Sbjct: 101 LKIRSKEGRCAQPSRTIQTIALP-------SMYNDPQFGTSCEITGFGKEQSTDYLYPEQ 153
Query: 574 ------KVFNSEECKA--RYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAIL 624
K+ + EC+ Y + +C K D+C+GDSGGPL ++
Sbjct: 154 LKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQ 207
Query: 625 ARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
R L G+VS+G C K + PGVYTR+++FL WI H +
Sbjct: 208 GRMTLTGIVSWGRGCALK-DKPGVYTRVSHFLPWIRSHTK 246
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
DSC GDSGGPL ++ R L G+VS+G C + PGVYTR+++FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Query: 168 LE 169
+
Sbjct: 245 TK 246
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 342 DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
DSC GDSGGPL ++ R L G+VS G C + + PGVY+R S+FL WI H
Sbjct: 192 DSCQGDSGGPLV------CSLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWIRSH 244
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSC GDSGGPL+ S+ R L GIVS G C + PGVYTR S+FL WI
Sbjct: 192 DSCQGDSGGPLVC------SLQGRMTLTGIVSWGRG-CALKDKPGVYTRVSHFLPWI 241
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 500 QFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT 559
++ D+ DI L+RL + + ++ P+ LP + + GWG
Sbjct: 70 KYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCR----IMGWGTI 125
Query: 560 EDGRSSLELL--AVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDSGGPLTWM 616
++L + + + C+A Y+ L ++ +C G + GKD CKGDSGGPL
Sbjct: 126 TSPNATLPDVPHCANINILDYAVCQAAYKGL-AATTLCAGILEGGKDTCKGDSGGPLICN 184
Query: 617 GSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
G F G++S G + PG+YT++ + WI
Sbjct: 185 GQFQ----------GILSVGGNPCAQPRKPGIYTKVFDYTDWI 217
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 17/91 (18%)
Query: 746 VYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTY 804
+ D +C A Y+ G++ T LC G + GKD+C GDSGGPL+ G F
Sbjct: 143 ILDYAVCQAAYK--GLAATT----LCAGILEGGKDTCKGDSGGPLICNGQFQ-------- 188
Query: 805 LLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GI+S+G + C R PG+YT+ + WI
Sbjct: 189 --GILSVGGNPCAQPRKPGIYTKVFDYTDWI 217
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 79 KVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ + C+A Y+ L ++ +C G + GKD+C GDSGGPL G F G+
Sbjct: 142 NILDYAVCQAAYKGL-AATTLCAGILEGGKDTCKGDSGGPLICNGQFQ----------GI 190
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWI 164
+S G C + PG+YT++ + WI
Sbjct: 191 LSVGGNPCAQPRKPGIYTKVFDYTDWI 217
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGPL G F G++S+G C PG+Y++ + WI
Sbjct: 169 GKDTCKGDSGGPLICNGQFQ----------GILSVGGNPCAQPRKPGIYTKVFDYTDWI 217
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 21/159 (13%)
Query: 513 KNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVA-GWGVTEDGRSSLE---- 567
+D+ LLRL+ + V + LP T+ E +T A GWG E G E
Sbjct: 7 SHDLMLLRLQSPAKITDAVKVLELP-----TQEPELGSTCEASGWGSIEPGPDDFEFPDE 61
Query: 568 LLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILAR 626
+ VQ + + C + + S +C G GKD C GDSGGPL G +
Sbjct: 62 IQCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGMWQ------ 115
Query: 627 NYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
G+ S+G T + P +YT++ ++L WI D + +
Sbjct: 116 ----GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITE 150
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISA 130
E+ VQ + + C + S +C G GKD+C GDSGGPL G +
Sbjct: 61 EIQCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGMWQ----- 115
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
G+ S+G CG P +YT++ ++L WI D + +
Sbjct: 116 -----GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITE 150
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 777 GKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GKD+C GDSGGPL+ G + GI S G + CG P +YT+ ++L WI
Sbjct: 96 GKDTCMGDSGGPLICNGMWQ----------GITSWGHTPCGSANKPSIYTKLIFYLDWI 144
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GKD+C GDSGGPL G + G+ S G CG P +Y++ ++L WI
Sbjct: 96 GKDTCMGDSGGPLICNGMWQ----------GITSWGHTPCGSANKPSIYTKLIFYLDWID 145
Query: 400 DHLDDH 405
D + ++
Sbjct: 146 DTITEN 151
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 503 THENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG-VTED 561
H+ + +NDIAL++L + E + + CLP +++ ++ V GWG + +
Sbjct: 80 VHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLP--KDYPCYVTGWGRLWTN 137
Query: 562 GRSSLELLAVQQKVFNSEECKA--RYQELDPSSQICVGGKVGKDACKGDSGGPLTWM--- 616
G + +L Q V + C + + +C GG AC GDSGGPL
Sbjct: 138 GPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAGGDGVISACNGDSGGPLNCQLEN 197
Query: 617 GSFDSAILARNYLIGLVSYGPTCGTKS-ENPGVYTRMTYFLQWILDHLE 664
GS++ + G+VS+G G + + P VYTR++ ++ WI + ++
Sbjct: 198 GSWE--------VFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQ 238
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPL-- 789
NG D + L V D C+ I + K +C GG +CNGDSGGPL
Sbjct: 137 NGPIADKLQQGLQPVVDHATCSRI---DWWGFRVKKTMVCAGGDGVISACNGDSGGPLNC 193
Query: 790 -MWMGSFDRSISARTYLLGIVSLGPST-CGMLRIPGVYTRTSYFLRWI 835
+ GS++ + GIVS G C + P VYTR S ++ WI
Sbjct: 194 QLENGSWE--------VFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWI 233
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 97 SQICVGGKVGKDSCYGDSGGPLTWM---GSFDSAISARNYLIGLVSYGP-EDCGKTENPG 152
+ +C GG +C GDSGGPL GS++ + G+VS+G C + P
Sbjct: 170 TMVCAGGDGVISACNGDSGGPLNCQLENGSWE--------VFGIVSFGSRRGCNTRKKPV 221
Query: 153 VYTRMTYFLQWILDHLE 169
VYTR++ ++ WI + ++
Sbjct: 222 VYTRVSAYIDWINEKMQ 238
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 52/157 (33%)
Query: 290 MRNDIALLRLERPPRLNGTHLMSC-------------CYYLAYA---DNG---------- 323
+RNDIAL++L L+ T ++C CY + NG
Sbjct: 89 LRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGL 148
Query: 324 ---------ISIDY-----NSGQMCVGGNVGKDSCNGDSGGPLTWM---GSFDSAISART 366
ID+ +C GG+ +CNGDSGGPL GS++
Sbjct: 149 QPVVDHATCSRIDWWGFRVKKTMVCAGGDGVISACNGDSGGPLNCQLENGSWE------- 201
Query: 367 YLIGLVSLGP-ASCGVYEIPGVYSRTSYFLRWILDHL 402
+ G+VS G C + P VY+R S ++ WI + +
Sbjct: 202 -VFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKM 237
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 23/197 (11%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LGE N+ T+ + I + + + N D DIALLRL
Sbjct: 55 VVLGEHNLNTNEGKEQI----------MTVNSVFIHSGWNSDDVAGGYDIALLRLNTQAS 104
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG---RSSLELLAVQQKVFNSEECKA 583
N V LP N + N N + GWG T G SL+ + +
Sbjct: 105 LNSAVQLAALPPSNQILPN--NNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSG 162
Query: 584 RYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCG-TK 642
+ ++ +C GG C GDSGGPL + + Y+ G+ S+ + G
Sbjct: 163 WWGSTVKTTMVCAGGGA-NSGCNGDSGGPL------NCQVNGSYYVHGVTSFVSSSGCNA 215
Query: 643 SENPGVYTRMTYFLQWI 659
S+ P V+TR++ ++ W+
Sbjct: 216 SKKPTVFTRVSAYISWM 232
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 87/250 (34%), Gaps = 80/250 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR--------------------TPHCATNPEQISSVRLGE 250
++GG VA+ S PW + Y HC + + V LGE
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCV-DSARTWRVVLGE 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN-DIALLRLERPPRLNGTH 309
H+ N++ Q + V V H ++ + DIALLRL LN
Sbjct: 60 HNLNTNEG----------KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAV 109
Query: 310 LMSC-------------CYYLAYADNGI--------------SIDY-------------N 329
++ CY + S+D+
Sbjct: 110 QLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVK 169
Query: 330 SGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS-CGVYEIPGVY 388
+ +C GG CNGDSGGPL + ++ Y+ G+ S +S C + P V+
Sbjct: 170 TTMVCAGGGA-NSGCNGDSGGPL------NCQVNGSYYVHGVTSFVSSSGCNASKKPTVF 222
Query: 389 SRTSYFLRWI 398
+R S ++ W+
Sbjct: 223 TRVSAYISWM 232
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVS-LGPSTCGMLRIPGVYTRT 828
+C GG CNGDSGGPL + ++ Y+ G+ S + S C + P V+TR
Sbjct: 173 VCAGGGA-NSGCNGDSGGPL------NCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRV 225
Query: 829 SYFLRWI 835
S ++ W+
Sbjct: 226 SAYISWM 232
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 96 SSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSY-GPEDCGKTENPGVY 154
++ +C GG C GDSGGPL + ++ Y+ G+ S+ C ++ P V+
Sbjct: 170 TTMVCAGGGA-NSGCNGDSGGPL------NCQVNGSYYVHGVTSFVSSSGCNASKKPTVF 222
Query: 155 TRMTYFLQWI 164
TR++ ++ W+
Sbjct: 223 TRVSAYISWM 232
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V ++ CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 1 SSGSSYPSL-LQCLKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPVVCN 59
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G L G+VS+G C + PGVYT++ ++ WI +
Sbjct: 60 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWIQQTIA 96
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 568 LLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILAR 626
L ++ V ++ CK+ Y + ICVG + GKD+C+GDSGGP ++
Sbjct: 10 LQCLKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGP----------VVCN 59
Query: 627 NYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
L G+VS+G C K++ PGVYT++ ++ WI +
Sbjct: 60 GQLQGIVSWGYGCAQKNK-PGVYTKVCNYVNWIQQTIA 96
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 36 ICVGFLQGGKDSCQGDSGGPVVCNGQ----------LQGIVSWG-YGCAQKNKPGVYTKV 84
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 85 CNYVNWIQQTIAA 97
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ WI
Sbjct: 44 GKDSCQGDSGGPVVCNGQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 91
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 21/159 (13%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTED--------GRSS 565
DIAL++L+K ++ Y+HPVCLP + V GWG ++ G+ S
Sbjct: 99 DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158
Query: 566 LELLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFD 620
+ L V + CK + + C G GK G DA +GDSGGP F+
Sbjct: 159 V-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DAAEGDSGGPFVMKSPFN 216
Query: 621 SAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ R Y +G+VS+G + G YT + +WI
Sbjct: 217 N----RWYQMGIVSWG-EGADRDGKYGFYTHVFRLKKWI 250
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+ GDSGGP
Sbjct: 156 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DAAEGDSGGPFVMKS 213
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E + G YT + +WI
Sbjct: 214 PFNN----RWYQMGIVSWG-EGADRDGKYGFYTHVFRLKKWI 250
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 674 YVQPVCLPYGDG----LKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIY 729
Y+ PVCLP + L+ ++G+ V GWG ++ +++ G Q + + I
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGR---VTGWGNLKETWTANV--GKGQPSVLQVVNLPIV 168
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-----GKVGKDSCNGD 784
ER +C ++ I C G GK G D+ GD
Sbjct: 169 ER----------PVC-------------KDSTRIRITDNMFCAGYKPDEGKRG-DAAEGD 204
Query: 785 SGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
SGGP + F+ R Y +GIVS G + G YT +WI
Sbjct: 205 SGGPFVMKSPFNN----RWYQMGIVSWGEGADRDGKY-GFYTHVFRLKKWI 250
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 33/175 (18%)
Query: 243 ISSVRLGEHDANSD---PDCSPDHRQCAPPVQDIRVVKVISHEHFS---------GEPNM 290
I+ ++L + A SD P C PD A +Q +V + G+P++
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 291 RNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGG 350
+ L +ERP + T + DN Y + G D+ GDSGG
Sbjct: 160 LQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DAAEGDSGG 207
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPAS--CGVYEIPGVYSRTSYFLRWILDHLD 403
P F++ R Y +G+VS G + G Y G Y+ +WI +D
Sbjct: 208 PFVMKSPFNN----RWYQMGIVSWGEGADRDGKY---GFYTHVFRLKKWIQKVID 255
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S+ PSL L ++ V + CK+ Y + ICVG + GKDSC GDSGGP+
Sbjct: 1 SSGSSYPSL-LQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCN 59
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G L G+VS+G C + PGVYT++ ++ WI
Sbjct: 60 GQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 91
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 568 LLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILAR 626
L ++ V + CK+ Y + ICVG + GKD+C+GDSGGP ++
Sbjct: 10 LQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGP----------VVCN 59
Query: 627 NYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
L G+VS+G C K++ PGVYT++ ++ WI
Sbjct: 60 GQLQGIVSWGYGCAQKNK-PGVYTKVCNYVNWI 91
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 770 LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
+CVG + GKDSC GDSGGP++ G L GIVS G C PGVYT+
Sbjct: 36 ICVGFLEGGKDSCQGDSGGPVVCNGQ----------LQGIVSWGYG-CAQKNKPGVYTKV 84
Query: 829 SYFLRWILATPEA 841
++ WI T A
Sbjct: 85 CNYVNWIQQTIAA 97
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKDSC GDSGGP+ G L G+VS G C PGVY++ ++ WI
Sbjct: 44 GKDSCQGDSGGPVVCNGQ----------LQGIVSWG-YGCAQKNKPGVYTKVCNYVNWI 91
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI-VAGW 556
V++ + H + +D+ LL+L + V P LP+ + R+ E VAGW
Sbjct: 72 VLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRP--LPW-QRVDRDVEPGTLCDVAGW 128
Query: 557 G-VTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLT 614
G V+ GR L V V + C R +Q + + + D+CKGDSGGPL
Sbjct: 129 GIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCAESNRRDSCKGDSGGPLV 188
Query: 615 WMGSFDSAILARNYLIGLVSYGP-TCGTKSENPGVYTRMTYFLQWI 659
G + G+V+ G CG + + PG+YTR+ + WI
Sbjct: 189 CGGVLE----------GVVTSGSRVCGNR-KKPGIYTRVASYAAWI 223
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+DSC GDSGGPL+ G + G+V+ G CG + PG+YTR + + WI
Sbjct: 176 RDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+DSC GDSGGPL G + G+V+ G CG + PG+YTR+ + WI
Sbjct: 176 RDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 301 RPPRLNGTHL----MSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMG 356
RP RL L + C + D I+ MC N +DSC GDSGGPL G
Sbjct: 137 RPDRLQHVLLPVLDRATCNRRTHHDGAIT----QRMMCAESN-RRDSCKGDSGGPLVCGG 191
Query: 357 SFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
+ G+V+ G CG + PG+Y+R + + WI
Sbjct: 192 VLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 86 CKARYQKLDPSSQICVGGKV--GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPE 143
C+A Y +L + G V GKD+C GDSGGPL G F G+VSYG
Sbjct: 150 CQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLICNGQFQ----------GIVSYGAH 199
Query: 144 DCGKTENPGVYTRMTYFLQWI 164
CG+ PG+YT + + WI
Sbjct: 200 PCGQGPKPGIYTNVFDYTDWI 220
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 553 VAGWGVTEDGRSSLELL--AVQQKVFNSEECKARYQELDPSSQICVGGKV--GKDACKGD 608
+ GWG + + + + + C+A Y EL + G V GKD C GD
Sbjct: 120 IMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGD 179
Query: 609 SGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
SGGPL G F G+VSYG + PG+YT + + WI
Sbjct: 180 SGGPLICNGQFQ----------GIVSYGAHPCGQGPKPGIYTNVFDYTDWI 220
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 770 LCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
LC G + GKD+C GDSGGPL+ G F GIVS G CG PG+YT
Sbjct: 164 LCAGIVQGGKDTCGGDSGGPLICNGQFQ----------GIVSYGAHPCGQGPKPGIYTNV 213
Query: 829 SYFLRWI 835
+ WI
Sbjct: 214 FDYTDWI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGPL G F G+VS G CG PG+Y+ + WI
Sbjct: 172 GKDTCGGDSGGPLICNGQFQ----------GIVSYGAHPCGQGPKPGIYTNVFDYTDWI 220
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 86 CKARYQKLDPSSQICVGGKV--GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPE 143
C+A Y +L + G V GKD+C GDSGGPL G F G+VSYG
Sbjct: 150 CQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLICNGQFQ----------GIVSYGAH 199
Query: 144 DCGKTENPGVYTRMTYFLQWI 164
CG+ PG+YT + + WI
Sbjct: 200 PCGQGPKPGIYTNVFDYTDWI 220
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 553 VAGWGVTEDGRSSLELL--AVQQKVFNSEECKARYQELDPSSQICVGGKV--GKDACKGD 608
+ GWG + + + + + C+A Y EL + G V GKD C GD
Sbjct: 120 IMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGD 179
Query: 609 SGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
SGGPL G F G+VSYG + PG+YT + + WI
Sbjct: 180 SGGPLICNGQFQ----------GIVSYGAHPCGQGPKPGIYTNVFDYTDWI 220
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 770 LCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
LC G + GKD+C GDSGGPL+ G F GIVS G CG PG+YT
Sbjct: 164 LCAGIVQGGKDTCGGDSGGPLICNGQFQ----------GIVSYGAHPCGQGPKPGIYTNV 213
Query: 829 SYFLRWI 835
+ WI
Sbjct: 214 FDYTDWI 220
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGPL G F G+VS G CG PG+Y+ + WI
Sbjct: 172 GKDTCGGDSGGPLICNGQFQ----------GIVSYGAHPCGQGPKPGIYTNVFDYTDWI 220
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQ 573
+ + LL+LE+S N V +CLP + +AGWG T+ + L
Sbjct: 84 SQLVLLKLERSVTLNQRVALICLPPEWYVVP--PGTKCEIAGWGETKGTGNDTVLNVALL 141
Query: 574 KVFNSEECKARYQELDPSSQICVGGKVGK-DACKGDSGGPLTWMGSFDSAILARNYLIGL 632
V +++EC +++ S++C G + AC+GD GGPL + +S +L G+
Sbjct: 142 NVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACF-THNSWVLE-----GI 195
Query: 633 VSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ C +S P V+TR++ F+ WI
Sbjct: 196 IIPNRVC-ARSRWPAVFTRVSVFVDWI 221
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 80 VFNSEKCKARYQKLDPSSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISARNYLIGLV 138
V ++++C +++ S++C G + +C GD GGPL + + ++++ +
Sbjct: 143 VISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPL-------ACFTHNSWVLEGI 195
Query: 139 SYGPEDCGKTENPGVYTRMTYFLQWI 164
C ++ P V+TR++ F+ WI
Sbjct: 196 IIPNRVCARSRWPAVFTRVSVFVDWI 221
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 765 TNKGQLCVGGKVGK-DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPG 823
+ ++C G + +C GD GGPL + +++L + + C R P
Sbjct: 157 VRESEMCTEGLLAPVGACEGDYGGPLA-------CFTHNSWVLEGIIIPNRVCARSRWPA 209
Query: 824 VYTRTSYFLRWI 835
V+TR S F+ WI
Sbjct: 210 VFTRVSVFVDWI 221
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 332 QMCVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
+MC G + +C GD GGPL + + ++++ + + C P V++R
Sbjct: 161 EMCTEGLLAPVGACEGDYGGPL-------ACFTHNSWVLEGIIIPNRVCARSRWPAVFTR 213
Query: 391 TSYFLRWI 398
S F+ WI
Sbjct: 214 VSVFVDWI 221
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKN---DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN 548
P++ + V H +Y + N DIALL LE S + P+CLP + F +
Sbjct: 73 PIRRVSV-----HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT----FYD 123
Query: 549 ENTI--VAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ---ELDPSSQ--ICVGG-KV 600
+ V+G+GV E+ + + +L V+ V N + C+ + +D SQ C G +
Sbjct: 124 LGLMGYVSGFGVMEE-KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 182
Query: 601 GKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWIL 660
+DAC+GDSGG + R G+VS+G C S G YT++ ++ WI
Sbjct: 183 KQDACQGDSGGVF----AVRDPNTDRWVATGIVSWGIGC---SRGYGFYTKVLNYVDWIK 235
Query: 661 DHLEDE 666
+E+E
Sbjct: 236 KEMEEE 241
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQ---KLDPSSQ--ICVGG-KVGKDSCYGDSG 115
F +++ + +L V+ V N + C+ + ++D SQ C G + +D+C GDSG
Sbjct: 133 FGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 192
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
G + + R G+VS+G G + G YT++ ++ WI +E+E
Sbjct: 193 GVF----AVRDPNTDRWVATGIVSWG---IGCSRGYGFYTKVLNYVDWIKKEMEEE 241
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKN---DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN 548
P++ + V H +Y + N DIALL LE S + P+CLP + F +
Sbjct: 230 PIRRVSV-----HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT----FYD 280
Query: 549 ENTI--VAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ---ELDPSSQ--ICVGG-KV 600
+ V+G+GV E+ + + +L V+ V N + C+ + +D SQ C G +
Sbjct: 281 LGLMGYVSGFGVMEE-KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 339
Query: 601 GKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWIL 660
+DAC+GDSGG + R G+VS+G C S G YT++ ++ WI
Sbjct: 340 KQDACQGDSGGVF----AVRDPNTDRWVATGIVSWGIGC---SRGYGFYTKVLNYVDWIK 392
Query: 661 DHLEDE 666
+E+E
Sbjct: 393 KEMEEE 398
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQ---KLDPSSQ--ICVGG-KVGKDSCYGDSG 115
F +++ + +L V+ V N + C+ + ++D SQ C G + +D+C GDSG
Sbjct: 290 FGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 349
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
G + + R G+VS+G G + G YT++ ++ WI +E+E
Sbjct: 350 GVF----AVRDPNTDRWVATGIVSWG---IGCSRGYGFYTKVLNYVDWIKKEMEEE 398
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 14/164 (8%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V++ + H + +D+ LL+L + V P LP+ VAGWG
Sbjct: 72 VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWG 129
Query: 558 -VTEDGRSSLELLAVQQKVFNSEECKAR-YQELDPSSQICVGGKVGKDACKGDSGGPLTW 615
V GR L V V + C R + + + ++ +D+CKGDSGGPL
Sbjct: 130 IVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVC 189
Query: 616 MGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
G + G+V+ G + PG+YTR+ + WI
Sbjct: 190 GGVLE----------GVVTSGSAVCGNRKKPGIYTRVASYAAWI 223
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+DSC GDSGGPL+ G + G+V+ G + CG + PG+YTR + + WI
Sbjct: 176 RDSCKGDSGGPLVCGGVLE----------GVVTSGSAVCGNRKKPGIYTRVASYAAWI 223
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
MC N +DSC GDSGGPL G + G+V+ G A CG + PG+Y+R +
Sbjct: 169 MCAESN-RRDSCKGDSGGPLVCGGVLE----------GVVTSGSAVCGNRKKPGIYTRVA 217
Query: 393 YFLRWI 398
+ WI
Sbjct: 218 SYAAWI 223
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+DSC GDSGGPL G + G+V+ G CG + PG+YTR+ + WI
Sbjct: 176 RDSCKGDSGGPLVCGGVLE----------GVVTSGSAVCGNRKKPGIYTRVASYAAWI 223
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V++ + H + +D+ LL+L + V P LP+ VAGWG
Sbjct: 72 VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWG 129
Query: 558 -VTEDGRSSLELLAVQQKVFNSEECKAR-YQELDPSSQICVGGKVGKDACKGDSGGPLTW 615
V GR L V V + C R + + + ++ +D+CKGDSGGPL
Sbjct: 130 IVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVC 189
Query: 616 MGSFDSAILARNYLIGLVSYGP-TCGTKSENPGVYTRMTYFLQWI 659
G + G+V+ G CG + + PG+YTR+ + WI
Sbjct: 190 GGVLE----------GVVTSGSRVCGNR-KKPGIYTRVASYAAWI 223
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+DSC GDSGGPL+ G + G+V+ G CG + PG+YTR + + WI
Sbjct: 176 RDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+DSC GDSGGPL G + G+V+ G CG + PG+YTR+ + WI
Sbjct: 176 RDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
MC N +DSC GDSGGPL G + G+V+ G CG + PG+Y+R +
Sbjct: 169 MCAESN-RRDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVA 217
Query: 393 YFLRWI 398
+ WI
Sbjct: 218 SYAAWI 223
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 18/168 (10%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIV 553
Q ++V + H Y D NDI LL+L++ V LP
Sbjct: 68 QKLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVG--TLPISAKSNSIPPGRVCRA 125
Query: 554 AGWGVTE-DGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGG 611
GWG T + S L V+ ++ + + CK +++ Q+CVG K ++ KGDSGG
Sbjct: 126 VGWGRTNVNEPPSDTLQEVKMRILDPQACK-HFEDFHQEPQLCVGNPKKIRNVYKGDSGG 184
Query: 612 PLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
PL G G+ SY ++ P V+TR++++ WI
Sbjct: 185 PLLCAGIAQ----------GIASY---VLRNAKPPSVFTRISHYRPWI 219
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 69 PSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCY-GDSGGPLTWMGSFDSA 127
PS L V+ ++ + + CK ++ Q+CVG + Y GDSGGPL G
Sbjct: 137 PSDTLQEVKMRILDPQACK-HFEDFHQEPQLCVGNPKKIRNVYKGDSGGPLLCAGIAQ-- 193
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+ SY + + P V+TR++++ WI
Sbjct: 194 --------GIASYVLRN---AKPPSVFTRISHYRPWI 219
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 769 QLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR 827
QLCVG K ++ GDSGGPL+ G GI S + P V+TR
Sbjct: 165 QLCVGNPKKIRNVYKGDSGGPLLCAGIAQ----------GIASY---VLRNAKPPSVFTR 211
Query: 828 TSYFLRWI 835
S++ WI
Sbjct: 212 ISHYRPWI 219
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V++ + H + +D+ LL+L + V P LP+ VAGWG
Sbjct: 79 VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWG 136
Query: 558 -VTEDGRSSLELLAVQQKVFNSEECKAR-YQELDPSSQICVGGKVGKDACKGDSGGPLTW 615
V GR L V V + C R + + + ++ +D+CKGDSGGPL
Sbjct: 137 IVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVC 196
Query: 616 MGSFDSAILARNYLIGLVSYGP-TCGTKSENPGVYTRMTYFLQWI 659
G + G+V+ G CG + + PG+YTR+ + WI
Sbjct: 197 GGVLE----------GVVTSGSRVCGNR-KKPGIYTRVASYAAWI 230
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+DSC GDSGGPL+ G + G+V+ G CG + PG+YTR + + WI
Sbjct: 183 RDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 230
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+DSC GDSGGPL G + G+V+ G CG + PG+YTR+ + WI
Sbjct: 183 RDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 230
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
MC N +DSC GDSGGPL G + G+V+ G CG + PG+Y+R +
Sbjct: 176 MCAESN-RRDSCKGDSGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVA 224
Query: 393 YFLRWI 398
+ WI
Sbjct: 225 SYAAWI 230
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 86 CKARYQKLDPSSQICVGGKV--GKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPE 143
C+A Y +L + G + GKD+C GDSGGPL G F G+VS+G
Sbjct: 150 CQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPLICNGQFQ----------GIVSFGAH 199
Query: 144 DCGKTENPGVYTRMTYFLQWI 164
CG+ PGVYT++ + WI
Sbjct: 200 PCGQGLKPGVYTKVFDYNHWI 220
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 746 VYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTY 804
+ D +C A Y + T LC G + GKD+C GDSGGPL+ G F
Sbjct: 144 LLDDAVCQAGYPE----LLTEYRTLCAGILEGGKDTCGGDSGGPLICNGQFQ-------- 191
Query: 805 LLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G CG PGVYT+ + WI
Sbjct: 192 --GIVSFGAHPCGQGLKPGVYTKVFDYNHWI 220
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 581 CKARYQELDPSSQICVGGKV--GKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT 638
C+A Y EL + G + GKD C GDSGGPL G F G+VS+G
Sbjct: 150 CQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPLICNGQFQ----------GIVSFGAH 199
Query: 639 CGTKSENPGVYTRMTYFLQWI 659
+ PGVYT++ + WI
Sbjct: 200 PCGQGLKPGVYTKVFDYNHWI 220
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGPL G F G+VS G CG PGVY++ + WI
Sbjct: 172 GKDTCGGDSGGPLICNGQFQ----------GIVSFGAHPCGQGLKPGVYTKVFDYNHWI 220
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 23/171 (13%)
Query: 490 APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
A V+ KV+Q +T D AL++L + P+ P T N+
Sbjct: 67 AVKVRSTKVLQ---APGFTKETYGKDWALIKLAQ---------PINQPTLKIATTTAYNQ 114
Query: 550 NTI-VAGWGVTEDGRSSLELLAVQQKVFNSEE-CKARYQE-LDPSSQICVG--GKVGKDA 604
T VAGWG +G S L F S+ C++ L + IC G G D
Sbjct: 115 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYPDTGGVDT 174
Query: 605 CKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
C+GDSGGP+ + D I +G+VS+G C + PGVYT ++ F
Sbjct: 175 CQGDSGGPMFRKDNADEWI-----QVGIVSWGYGCA-RPGYPGVYTEVSTF 219
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 70/188 (37%), Gaps = 45/188 (23%)
Query: 644 ENPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLT 703
+ PG +T+ TY W L L +N P L YN +G T VAGWG
Sbjct: 77 QAPG-FTKETYGKDWALIKLAQPINQPT--------LKIATTTAYN-QGTFT-VAGWGAN 125
Query: 704 EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISI 763
+ G +Q RYL A + + LV + +C + G+
Sbjct: 126 RE--------GGSQ---QRYLLKANVPFVSDAACRSSSSFILVANEMICAGYPDTGGV-- 172
Query: 764 DTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPG 823
D+C GDSGGP+ + D I +GIVS G C PG
Sbjct: 173 ---------------DTCQGDSGGPMFRKDNADEWIQ-----VGIVSWGYG-CARPGYPG 211
Query: 824 VYTRTSYF 831
VYT S F
Sbjct: 212 VYTEVSTF 219
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 96 SSQICVG--GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGV 153
+ IC G G D+C GDSGGP+ + D I +G+VS+G C + PGV
Sbjct: 159 NEMICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWG-YGCARPGYPGV 212
Query: 154 YTRMTYF 160
YT ++ F
Sbjct: 213 YTEVSTF 219
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYF 394
G D+C GDSGGP+ + D I +G+VS G C PGVY+ S F
Sbjct: 171 GVDTCQGDSGGPMFRKDNADEWIQ-----VGIVSWG-YGCARPGYPGVYTEVSTF 219
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 14/169 (8%)
Query: 495 DIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLP-YGNAMTRNFENENTIV 553
D K Q L +D+ L++L + + +V + LP YG+ + E + V
Sbjct: 64 DEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIP---EKTSCSV 120
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKA--RYQELDPSSQICVGG-KVGKDACKGDSG 610
GWG T L + +E+C R + S+IC G K+G C+GD G
Sbjct: 121 YGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYG 180
Query: 611 GPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GPL +L G++ G C + PG++ R+ Y+ +WI
Sbjct: 181 GPLVCEQHKMRMVL------GVIVPGRGCAIPNR-PGIFVRVAYYAKWI 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 762 SIDTNKGQLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLR 820
+ N+ ++C G K+G C GD GGPL+ R + LG++ G C +
Sbjct: 155 KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMV------LGVIVPG-RGCAIPN 207
Query: 821 IPGVYTRTSYFLRWI 835
PG++ R +Y+ +WI
Sbjct: 208 RPGIFVRVAYYAKWI 222
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 80 VFNSEKCKA--RYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIG 136
+ +EKC R + S+IC G K+G C GD GGPL ++G
Sbjct: 142 IMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLV------CEQHKMRMVLG 195
Query: 137 LVSYGPEDCGKTENPGVYTRMTYFLQWI 164
++ G C PG++ R+ Y+ +WI
Sbjct: 196 VIVPG-RGCAIPNRPGIFVRVAYYAKWI 222
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 325 SIDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYE 383
+ N ++C G +G C GD GGPL ++G++ G C +
Sbjct: 155 KVTLNESEICAGAEKIGSGPCEGDYGGPLV------CEQHKMRMVLGVIVPG-RGCAIPN 207
Query: 384 IPGVYSRTSYFLRWI 398
PG++ R +Y+ +WI
Sbjct: 208 RPGIFVRVAYYAKWI 222
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 14/169 (8%)
Query: 495 DIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLP-YGNAMTRNFENENTIV 553
D K Q L +D+ L++L + + +V + LP YG+ + E + V
Sbjct: 64 DEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIP---EKTSCSV 120
Query: 554 AGWGVTEDGRSSLELLAVQQKVFNSEECKA--RYQELDPSSQICVGG-KVGKDACKGDSG 610
GWG T L + +E+C R + S+IC G K+G C+GD G
Sbjct: 121 YGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYG 180
Query: 611 GPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GPL +L G++ G C + PG++ R+ Y+ +WI
Sbjct: 181 GPLVCEQHKMRMVL------GVIVPGRGCAIPNR-PGIFVRVAYYAKWI 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 762 SIDTNKGQLCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLR 820
+ N+ ++C G K+G C GD GGPL+ R + LG++ G C +
Sbjct: 155 KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMV------LGVIVPG-RGCAIPN 207
Query: 821 IPGVYTRTSYFLRWI 835
PG++ R +Y+ +WI
Sbjct: 208 RPGIFVRVAYYAKWI 222
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 80 VFNSEKCKA--RYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIG 136
+ +EKC R + S+IC G K+G C GD GGPL ++G
Sbjct: 142 IMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLV------CEQHKMRMVLG 195
Query: 137 LVSYGPEDCGKTENPGVYTRMTYFLQWI 164
++ G C PG++ R+ Y+ +WI
Sbjct: 196 VIVPG-RGCAIPNRPGIFVRVAYYAKWI 222
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 325 SIDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYE 383
+ N ++C G +G C GD GGPL ++G++ G C +
Sbjct: 155 KVTLNESEICAGAEKIGSGPCEGDYGGPLV------CEQHKMRMVLGVIVPG-RGCAIPN 207
Query: 384 IPGVYSRTSYFLRWI 398
PG++ R +Y+ +WI
Sbjct: 208 RPGIFVRVAYYAKWI 222
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 498 VIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG 557
V++ + H + +D+ LL+L + V P LP+ VAGWG
Sbjct: 72 VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWG 129
Query: 558 -VTEDGRSSLELLAVQQKVFNSEECKAR-YQELDPSSQICVGGKVGKDACKGDSGGPLTW 615
V GR L V V + C R + + + ++ +D+CKGD+GGPL
Sbjct: 130 IVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDAGGPLVC 189
Query: 616 MGSFDSAILARNYLIGLVSYGP-TCGTKSENPGVYTRMTYFLQWI 659
G + G+V+ G CG + + PG+YTR+ + WI
Sbjct: 190 GGVLE----------GVVTSGSRVCGNR-KKPGIYTRVASYAAWI 223
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+DSC GD+GGPL+ G + G+V+ G CG + PG+YTR + + WI
Sbjct: 176 RDSCKGDAGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 107 KDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+DSC GD+GGPL G + G+V+ G CG + PG+YTR+ + WI
Sbjct: 176 RDSCKGDAGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
MC N +DSC GD+GGPL G + G+V+ G CG + PG+Y+R +
Sbjct: 169 MCAESN-RRDSCKGDAGGPLVCGGVLE----------GVVTSGSRVCGNRKKPGIYTRVA 217
Query: 393 YFLRWI 398
+ WI
Sbjct: 218 SYAAWI 223
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 58/256 (22%)
Query: 440 QFLTHENYTGTK---NDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPV--- 493
+ ++H N T N+ LL K+ +RLG +N D ++I AP +
Sbjct: 119 KMISHHNLTSGATLINEQWLLTTAKN----LRLGHKN---DTKAKDI------APTLRLY 165
Query: 494 ----QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
Q++++ + + H + + DI L++L++ N V P+CLP ++++ N
Sbjct: 166 VGKKQEVEIEKVIFHPD----NSTVDIGLIKLKQKVPVNERVMPICLP-----SKDYVNV 216
Query: 550 NTI--VAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ------ELDPSSQI------- 594
+ V+GWG + + L V V + E+C Y+ + P S +
Sbjct: 217 GLVGYVSGWGRNANLNFTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILN 276
Query: 595 ----CVG-GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVY 649
C G K +D C GD+G D Y G++S+ +C ++ GVY
Sbjct: 277 EHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTW----YAAGILSFDKSC--RTAEYGVY 330
Query: 650 TRMTYFLQWILDHLED 665
R+T L WI + D
Sbjct: 331 VRVTSILDWIQTTIAD 346
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 209 QRIIGGYVAKLGSIPWIARIA--YSRTPHCATNPEQ-----ISSVRLGEHDANSDPDCSP 261
QRI+GG + GS PW A++ ++ T EQ ++RLG + D +P
Sbjct: 101 QRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAP 160
Query: 262 DHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYAD 321
R Q++ + KVI H N DI L++L++ +N + C Y +
Sbjct: 161 TLRLYVGKKQEVEIEKVIFHPD-----NSTVDIGLIKLKQKVPVNERVMPICLPSKDYVN 215
Query: 322 NGISIDYNSG 331
G+ + Y SG
Sbjct: 216 VGL-VGYVSG 224
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 63/172 (36%), Gaps = 25/172 (14%)
Query: 668 NIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTA 727
+P V P+CLP D + G V+GWG + L V V D+ C
Sbjct: 196 KVPVNERVMPICLPSKDYVNVGLVG---YVSGWGRNANLNFTEHLKYVMLPVADQEKCVQ 252
Query: 728 IYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSG 786
YE G ++ K V G+ N+ C G K +D+C GD+G
Sbjct: 253 YYE--GSTVPEKKTPKSPV-------------GVQPILNEHTFCAGLSKYQEDTCYGDAG 297
Query: 787 GPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
D + Y GI+S S C GVY R + L WI T
Sbjct: 298 SAFAVHDKDDDTW----YAAGILSFDKS-CRTAEY-GVYVRVTSILDWIQTT 343
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 99 ICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRM 157
C G K +D+CYGD+G D Y G++S+ + +T GVY R+
Sbjct: 280 FCAGLSKYQEDTCYGDAGSAFAVHDKDDDTW----YAAGILSF--DKSCRTAEYGVYVRV 333
Query: 158 TYFLQWILDHLED 170
T L WI + D
Sbjct: 334 TSILDWIQTTIAD 346
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 28/185 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKN---DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN 548
P++ + V H +Y + N DIALL LE S + P+CLP + F +
Sbjct: 162 PIRRVSV-----HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT----FYD 212
Query: 549 ENTI--VAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ---ELDPSSQ--ICVGG-KV 600
+ V+G+GV E+ + + +L V+ V N + C+ + +D SQ C G +
Sbjct: 213 LGLMGYVSGFGVMEE-KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 271
Query: 601 GKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWIL 660
+DAC+GDSGG + R G+VS+G C S G YT++ ++ WI
Sbjct: 272 KQDACQGDSGGVF----AVRDPNTDRWVATGIVSWGIGC---SRGYGFYTKVLNYVDWIK 324
Query: 661 DHLED 665
+E+
Sbjct: 325 KEMEE 329
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQ---KLDPSSQ--ICVGG-KVGKDSCYGDSG 115
F +++ + +L V+ V N + C+ + ++D SQ C G + +D+C GDSG
Sbjct: 222 FGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 281
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
G + + R G+VS+G G + G YT++ ++ WI +E+
Sbjct: 282 GVF----AVRDPNTDRWVATGIVSWG---IGCSRGYGFYTKVLNYVDWIKKEMEE 329
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 490 APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
A V+ KV+Q +T D AL++L + P+ P T N+
Sbjct: 62 AVKVRSTKVLQ---APGFTKETYGKDWALIKLAQ---------PINQPTLKIATTTAYNQ 109
Query: 550 NTI-VAGWGVTEDGRSSLELLAVQQKVFNSEE-CKARYQE-LDPSSQICVGGKVGK-DAC 605
T VAGWG +G S L F S+ C++ L + IC G + D C
Sbjct: 110 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTC 169
Query: 606 KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+GDSGGP+ + D + +G+VS+G C K + GVYT ++ F
Sbjct: 170 QGDSGGPMFRKDNADEWV-----QVGIVSWGEGCARKGKY-GVYTEVSTF 213
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 96 SSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
+ IC G + D+C GDSGGP+ + D + +G+VS+G E C + GVY
Sbjct: 154 NEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQ-----VGIVSWG-EGCARKGKYGVY 207
Query: 155 TRMTYF 160
T ++ F
Sbjct: 208 TEVSTF 213
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 70/188 (37%), Gaps = 46/188 (24%)
Query: 644 ENPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLT 703
+ PG +T+ TY W L L +N P L YN +G T VAGWG
Sbjct: 72 QAPG-FTKETYGKDWALIKLAQPINQPT--------LKIATTTAYN-QGTFT-VAGWGAN 120
Query: 704 EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISI 763
+ G +Q RYL A + + LV + +C
Sbjct: 121 RE--------GGSQ---QRYLLKANVPFVSDAACRSSSSFILVANEMICAGY-------- 161
Query: 764 DTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPG 823
DT + +D+C GDSGGP+ + D + +GIVS G C G
Sbjct: 162 DTKQ----------EDTCQGDSGGPMFRKDNADEWVQ-----VGIVSWGEG-CARKGKYG 205
Query: 824 VYTRTSYF 831
VYT S F
Sbjct: 206 VYTEVSTF 213
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 333 MCVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
+C G + + D+C GDSGGP+ + D + +G+VS G C GVY+
Sbjct: 157 ICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQ-----VGIVSWGEG-CARKGKYGVYTEV 210
Query: 392 SYF 394
S F
Sbjct: 211 STF 213
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 490 APPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE 549
A V+ KV+Q +T D AL++L + P+ P T N+
Sbjct: 67 AVKVRSTKVLQ---APGFTKETYGKDWALIKLAQ---------PINQPTLKIATTTAYNQ 114
Query: 550 NTI-VAGWGVTEDGRSSLELLAVQQKVFNSEE-CKARYQE-LDPSSQICVGGKVGK-DAC 605
T VAGWG +G S L F S+ C++ L + IC G + D C
Sbjct: 115 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTC 174
Query: 606 KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
+GDSGGP+ + D + +G+VS+G C K + GVYT ++ F
Sbjct: 175 QGDSGGPMFRKDNADEWV-----QVGIVSWGEGCARKGKY-GVYTEVSTF 218
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 96 SSQICVGGKVGK-DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
+ IC G + D+C GDSGGP+ + D + +G+VS+G E C + GVY
Sbjct: 159 NEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQ-----VGIVSWG-EGCARKGKYGVY 212
Query: 155 TRMTYF 160
T ++ F
Sbjct: 213 TEVSTF 218
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 70/188 (37%), Gaps = 46/188 (24%)
Query: 644 ENPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLT 703
+ PG +T+ TY W L L +N P L YN +G T VAGWG
Sbjct: 77 QAPG-FTKETYGKDWALIKLAQPINQPT--------LKIATTTAYN-QGTFT-VAGWGAN 125
Query: 704 EKKIPSHILLGVNQLVYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISI 763
+ G +Q RYL A + + LV + +C
Sbjct: 126 RE--------GGSQ---QRYLLKANVPFVSDAACRSSSSFILVANEMICAGY-------- 166
Query: 764 DTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPG 823
DT + +D+C GDSGGP+ + D + +GIVS G C G
Sbjct: 167 DTKQ----------EDTCQGDSGGPMFRKDNADEWVQ-----VGIVSWGEG-CARKGKYG 210
Query: 824 VYTRTSYF 831
VYT S F
Sbjct: 211 VYTEVSTF 218
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 333 MCVGGNVGK-DSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
+C G + + D+C GDSGGP+ + D + +G+VS G C GVY+
Sbjct: 162 ICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQ-----VGIVSWGEG-CARKGKYGVYTEV 215
Query: 392 SYF 394
S F
Sbjct: 216 STF 218
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 512 TKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE--DGRSSLELL 569
+ +D+ LLRL + E V + LP +GWG E + + +L
Sbjct: 93 SSHDLMLLRLSEPAELTDAVKVMDLPTQEPAL----GTTCYASGWGSIEPEEFLTPKKLQ 148
Query: 570 AVQQKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNY 628
V V +++ C + + +C G G K C GDSGGPL +
Sbjct: 149 CVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPL----------VCNGV 198
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILD 661
L G+ S+G E P +YT++ ++ +WI D
Sbjct: 199 LQGITSWGSEPCALPERPSLYTKVVHYRKWIKD 231
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISA 130
+L V V +++ C + + +C G G K +C GDSGGPL G
Sbjct: 146 KLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG-------- 197
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILD 166
L G+ S+G E C E P +YT++ ++ +WI D
Sbjct: 198 --VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKD 231
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 765 TNKGQLCVGGKVG-KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPG 823
K LC G G K +C+GDSGGPL+ G L GI S G C + P
Sbjct: 168 VTKFMLCAGRWTGGKSTCSGDSGGPLVCNG----------VLQGITSWGSEPCALPERPS 217
Query: 824 VYTRTSYFLRWILAT 838
+YT+ ++ +WI T
Sbjct: 218 LYTKVVHYRKWIKDT 232
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
GK +C+GDSGGPL G L G+ S G C + E P +Y++ ++ +WI
Sbjct: 181 GKSTCSGDSGGPLVCNG----------VLQGITSWGSEPCALPERPSLYTKVVHYRKWIK 230
Query: 400 D 400
D
Sbjct: 231 D 231
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 76 VQQKVFNSEKCKARYQKLD---PSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISAR 131
V + E C+A Y + + S +C G + GKD+C GDSGGPL G F
Sbjct: 142 VNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNGQFQ------ 195
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+ S+G + C + P YT++ L WI
Sbjct: 196 ----GIASWGDDPCAQPHKPAAYTKVFDHLDWI 224
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 553 VAGWGVTEDGRSSLELL--AVQQKVFNSEECKARYQELD---PSSQICVG-GKVGKDACK 606
+ GWG + + V + E C+A Y E + S +C G + GKD CK
Sbjct: 122 IMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCK 181
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GDSGGPL G F G+ S+G + P YT++ L WI
Sbjct: 182 GDSGGPLICNGQFQ----------GIASWGDDPCAQPHKPAAYTKVFDHLDWI 224
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 751 LCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIV 809
+C A Y + LC G + GKD+C GDSGGPL+ G F GI
Sbjct: 151 MCRAPYPE--FELPATSRTLCAGILEGGKDTCKGDSGGPLICNGQFQ----------GIA 198
Query: 810 SLGPSTCGMLRIPGVYTRTSYFLRWI 835
S G C P YT+ L WI
Sbjct: 199 SWGDDPCAQPHKPAAYTKVFDHLDWI 224
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GKD+C GDSGGPL G F G+ S G C P Y++ L WI
Sbjct: 176 GKDTCKGDSGGPLICNGQFQ----------GIASWGDDPCAQPHKPAAYTKVFDHLDWI 224
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 80 VFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN---YLIG 136
+ ++ CK + + IC G G SC GDSGGPL + +N L+G
Sbjct: 14 LLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPL---------VCKKNGAWTLVG 63
Query: 137 LVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+VS+G C T PGVY R+T + W+
Sbjct: 64 IVSWGSSTC-STSTPGVYARVTALVNWV 90
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 767 KGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
K + G G SC GDSGGPL+ + A T L+GIVS G STC PGVY
Sbjct: 29 KDAMICAGASGVSSCMGDSGGPLVC-----KKNGAWT-LVGIVSWGSSTCST-STPGVYA 81
Query: 827 RTSYFLRWILATPEA 841
R + + W+ T A
Sbjct: 82 RVTALVNWVQQTLAA 96
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 575 VFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARN---YLIG 631
+ ++ CK + + IC G G +C GDSGGPL + +N L+G
Sbjct: 14 LLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPL---------VCKKNGAWTLVG 63
Query: 632 LVSYG-PTCGTKSENPGVYTRMTYFLQWI 659
+VS+G TC T + PGVY R+T + W+
Sbjct: 64 IVSWGSSTCSTST--PGVYARVTALVNWV 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
M G G SC GDSGGPL + L+G+VS G ++C PGVY+R +
Sbjct: 32 MICAGASGVSSCMGDSGGPLV------CKKNGAWTLVGIVSWGSSTCST-STPGVYARVT 84
Query: 393 YFLRWI 398
+ W+
Sbjct: 85 ALVNWV 90
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 80 VFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN---YLIG 136
+ ++ CK + + IC G G SC GDSGGPL + +N L+G
Sbjct: 13 LLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPL---------VCKKNGAWTLVG 62
Query: 137 LVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+VS+G C T PGVY R+T + W+
Sbjct: 63 IVSWGSSTC-STSTPGVYARVTALVNWV 89
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 767 KGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYT 826
K + G G SC GDSGGPL+ + A T L+GIVS G STC PGVY
Sbjct: 28 KDAMICAGASGVSSCMGDSGGPLVC-----KKNGAWT-LVGIVSWGSSTCST-STPGVYA 80
Query: 827 RTSYFLRWILATPEA 841
R + + W+ T A
Sbjct: 81 RVTALVNWVQQTLAA 95
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 575 VFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARN---YLIG 631
+ ++ CK + + IC G G +C GDSGGPL + +N L+G
Sbjct: 13 LLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPL---------VCKKNGAWTLVG 62
Query: 632 LVSYG-PTCGTKSENPGVYTRMTYFLQWI 659
+VS+G TC T + PGVY R+T + W+
Sbjct: 63 IVSWGSSTCSTST--PGVYARVTALVNWV 89
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
M G G SC GDSGGPL + L+G+VS G ++C PGVY+R +
Sbjct: 31 MICAGASGVSSCMGDSGGPLV------CKKNGAWTLVGIVSWGSSTCST-STPGVYARVT 83
Query: 393 YFLRWI 398
+ W+
Sbjct: 84 ALVNWV 89
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKN---DIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN 548
P++ + V H +Y + N DIALL LE S + P+CLP + F +
Sbjct: 162 PIRRVSV-----HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT----FYD 212
Query: 549 ENTI--VAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ---ELDPSSQ--ICVGG-KV 600
+ V+G+GV E+ + + +L V+ V N + C+ + +D SQ C G +
Sbjct: 213 LGLMGYVSGFGVMEE-KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 271
Query: 601 GKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWIL 660
+DAC+GD+GG + R G+VS+G C S G YT++ ++ WI
Sbjct: 272 KQDACQGDAGGVF----AVRDPNTDRWVATGIVSWGIGC---SRGYGFYTKVLNYVDWIK 324
Query: 661 DHLE 664
+E
Sbjct: 325 KEME 328
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 62 FSTEDKRPSLELLAVQQKVFNSEKCKARYQ---KLDPSSQ--ICVGG-KVGKDSCYGDSG 115
F +++ + +L V+ V N + C+ + ++D SQ C G + +D+C GD+G
Sbjct: 222 FGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAG 281
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G + + R G+VS+G G + G YT++ ++ WI +E
Sbjct: 282 GVF----AVRDPNTDRWVATGIVSWG---IGCSRGYGFYTKVLNYVDWIKKEME 328
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P Q + V + + Y + + D+ LL+L + + N YV + LP +
Sbjct: 62 PTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVK--PGTM 119
Query: 551 TIVAGWGVTEDGRS-SLELLAVQQKVFNSEECKAR-YQELDP---SSQICVGG-KVGKDA 604
VAGWG T + S S L V+ + + + C R + +P + +C G + G+D+
Sbjct: 120 CQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDS 179
Query: 605 CKGDSGGPLTWMGSFDSAILARNYLIGLVSYG--PTCGTKSENPGVYTRMT-YFLQWILD 661
C GDSG PL G F G+ S+G CG PGVY ++ L WI+
Sbjct: 180 CNGDSGSPLLCEGVFR----------GVTSFGLENKCG-DPRGPGVYILLSKKHLNWIIM 228
Query: 662 HLEDEV 667
++ V
Sbjct: 229 TIKGAV 234
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S D +E+ + +KV N ++ + + + +C G + G+DSC GDSG PL
Sbjct: 133 SWSDTLREVEITIIDRKVCN-DRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE 191
Query: 122 GSFDSAISARNYLIGLVSYGPED-CGKTENPGVYTRMT-YFLQWIL 165
G F G+ S+G E+ CG PGVY ++ L WI+
Sbjct: 192 GVFR----------GVTSFGLENKCGDPRGPGVYILLSKKHLNWII 227
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 746 VYDRYLCTAIYERNGISIDTNKGQ--LCVGG-KVGKDSCNGDSGGPLMWMGSFDRSISAR 802
+ DR +C +RN + + G +C G + G+DSCNGDSG PL+ G F
Sbjct: 145 IIDRKVCN---DRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFR------ 195
Query: 803 TYLLGIVSLG-PSTCGMLRIPGVYTRTS-YFLRWILAT 838
G+ S G + CG R PGVY S L WI+ T
Sbjct: 196 ----GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLG-PASCGVYEIPGVYSRTS-YFLRW 397
G+DSCNGDSG PL G F G+ S G CG PGVY S L W
Sbjct: 176 GRDSCNGDSGSPLLCEGVFR----------GVTSFGLENKCGDPRGPGVYILLSKKHLNW 225
Query: 398 IL 399
I+
Sbjct: 226 II 227
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 507 YTDSGTKNDIALLRLEKSPEWNGY-VHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRS- 564
Y +NDIA+L L + + +G P LP + R + +V+G+G DG++
Sbjct: 81 YRQETMENDIAILELSRPLKLDGLKSKPAKLP--DIEFRPKTGSDVLVSGYG---DGQTM 135
Query: 565 ---SLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDS 621
+L + Q V + +EC+ +Y + S Q+ KVG GD+G P
Sbjct: 136 DPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVGVSLESGDAGDP--------- 186
Query: 622 AILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILD 661
+ ++ L+G+ +Y P P V+T++ ++ WI D
Sbjct: 187 -TVQQDTLVGVAAYFPK--RPEGAPEVFTKVGSYVSWIQD 223
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 72 ELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISAR 131
+L + Q V + ++C+ +Y + S Q+ KVG GD+G P +
Sbjct: 141 DLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVGVSLESGDAGDPTV----------QQ 190
Query: 132 NYLIGLVSYGPEDCGKTEN-PGVYTRMTYFLQWILD 166
+ L+G+ +Y P+ + E P V+T++ ++ WI D
Sbjct: 191 DTLVGVAAYFPK---RPEGAPEVFTKVGSYVSWIQD 223
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 513 KNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAV 571
+ND+ALL+L+ + + + P+ LP + +AGWG+T + GR S L +
Sbjct: 84 ENDLALLQLDGKVKPSRTIRPLALPSKRQVVA--AGTRCSMAGWGLTHQGGRLSRVLREL 141
Query: 572 QQKVFNSEECK-ARY--QELDPSSQICVGGKVGKDA-CKGDSGGPLTWMGSFDSAILARN 627
+V ++ C +R+ L PS +C+ A CKGDSGGPL
Sbjct: 142 DLQVLDTRMCNNSRFWNGSLSPS-MVCLAADSKDQAPCKGDSGGPLVCGKG--------R 192
Query: 628 YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
L G++S+ T P V T + ++ WI
Sbjct: 193 VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCK-ARY--QKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSF 124
R S L + +V ++ C +R+ L PS + C GDSGGPL
Sbjct: 133 RLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLV----- 187
Query: 125 DSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G++S+ C P V T + ++ WI
Sbjct: 188 ---CGKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 40/162 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYERNG 733
++P+ LP + G +AGWGLT + S +L ++ V D +C NG
Sbjct: 102 IRPLALP--SKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG 159
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMG 793
+ +CL D +K Q C GDSGGPL+
Sbjct: 160 ---SLSPSMVCLAAD-----------------SKDQA---------PCKGDSGGPLV--- 187
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L G++S C + P V T + ++ WI
Sbjct: 188 -----CGKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 80 VFNSEKCKARYQ-KLDPSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
+ + C+ Y + ++ +C G + G+D+C+ DSGGPL G F G+
Sbjct: 144 ILDHAVCRTAYSWRQVANTTLCAGILQGGRDTCHFDSGGPLICNGIFQ----------GI 193
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWI 164
VS+G CG+ PGVYT++ +L WI
Sbjct: 194 VSWGGHPCGQPGEPGVYTKVFDYLDWI 220
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 746 VYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTY 804
+ D +C Y ++ T LC G + G+D+C+ DSGGPL+ G F
Sbjct: 144 ILDHAVCRTAYSWRQVANTT----LCAGILQGGRDTCHFDSGGPLICNGIFQ-------- 191
Query: 805 LLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G CG PGVYT+ +L WI
Sbjct: 192 --GIVSWGGHPCGQPGEPGVYTKVFDYLDWI 220
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+D+C+ DSGGPL G F G+VS G CG PGVY++ +L WI
Sbjct: 172 GRDTCHFDSGGPLICNGIFQ----------GIVSWGGHPCGQPGEPGVYTKVFDYLDWI 220
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 601 GKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TCGTKSENPGVYTRMTYFLQWI 659
G+D C DSGGPL G F G+VS+G CG E PGVYT++ +L WI
Sbjct: 172 GRDTCHFDSGGPLICNGIFQ----------GIVSWGGHPCGQPGE-PGVYTKVFDYLDWI 220
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 22/186 (11%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P Q + V + + Y + + D+ LL+L + + N YV + LP +
Sbjct: 62 PTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVK--PGTM 119
Query: 551 TIVAGWGVTEDGRS-SLELLAVQQKVFNSEECKAR-YQELDP---SSQICVGG-KVGKDA 604
VAGWG T + S S L V + + + C R + +P + +C G + G+D+
Sbjct: 120 CQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDS 179
Query: 605 CKGDSGGPLTWMGSFDSAILARNYLIGLVSYG--PTCGTKSENPGVYTRMT-YFLQWILD 661
C GDSG PL G F G+ S+G CG PGVY ++ L WI+
Sbjct: 180 CNGDSGSPLLCEGVFR----------GVTSFGLENKCG-DPRGPGVYILLSKKHLNWIIM 228
Query: 662 HLEDEV 667
++ V
Sbjct: 229 TIKGAV 234
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 68/170 (40%), Gaps = 46/170 (27%)
Query: 674 YVQPVCLPY-GDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
YV + LP GD +K G VAGWG T S L VN + DR +C +R
Sbjct: 101 YVTILHLPKKGDDVK---PGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCN---DR 154
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
N + + G +C G + G+DSCNGDSG PL+
Sbjct: 155 NHYNFNPVIGM-------------------------NMVCAGSLRGGRDSCNGDSGSPLL 189
Query: 791 WMGSFDRSISARTYLLGIVSLG-PSTCGMLRIPGVYTRTS-YFLRWILAT 838
G F G+ S G + CG R PGVY S L WI+ T
Sbjct: 190 CEGVFR----------GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
S D + + + +KV N ++ + + + +C G + G+DSC GDSG PL
Sbjct: 133 SWSDTLREVNITIIDRKVCN-DRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE 191
Query: 122 GSFDSAISARNYLIGLVSYGPED-CGKTENPGVYTRMT-YFLQWIL 165
G F G+ S+G E+ CG PGVY ++ L WI+
Sbjct: 192 GVFR----------GVTSFGLENKCGDPRGPGVYILLSKKHLNWII 227
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLG-PASCGVYEIPGVYSRTS-YFLRW 397
G+DSCNGDSG PL G F G+ S G CG PGVY S L W
Sbjct: 176 GRDSCNGDSGSPLLCEGVFR----------GVTSFGLENKCGDPRGPGVYILLSKKHLNW 225
Query: 398 IL 399
I+
Sbjct: 226 II 227
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 80 VFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVS 139
+ + CK + C G G DSC GDSGGPL D + L G+VS
Sbjct: 16 IVSEADCKKSWGSKITDVMTCAGAS-GVDSCMGDSGGPLVCQK--DGVWT----LAGIVS 68
Query: 140 YGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+G C T PGVY+R+T + W+ LE
Sbjct: 69 WGSGVC-STSTPGVYSRVTALMPWVQQILE 97
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 22/97 (22%)
Query: 575 VFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPL------TWMGSFDSAILARNY 628
+ + +CK + C G G D+C GDSGGPL W
Sbjct: 16 IVSEADCKKSWGSKITDVMTCAGAS-GVDSCMGDSGGPLVCQKDGVWT------------ 62
Query: 629 LIGLVSYGP-TCGTKSENPGVYTRMTYFLQWILDHLE 664
L G+VS+G C T + PGVY+R+T + W+ LE
Sbjct: 63 LAGIVSWGSGVCSTST--PGVYSRVTALMPWVQQILE 97
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
M G G DSC GDSGGPL D + L G+VS G C PGVYSR +
Sbjct: 34 MTCAGASGVDSCMGDSGGPLVCQK--DGVWT----LAGIVSWGSGVCST-STPGVYSRVT 86
Query: 393 YFLRWI 398
+ W+
Sbjct: 87 ALMPWV 92
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTS 829
+ G G DSC GDSGGPL+ L GIVS G C PGVY+R +
Sbjct: 34 MTCAGASGVDSCMGDSGGPLVCQK------DGVWTLAGIVSWGSGVCST-STPGVYSRVT 86
Query: 830 YFLRWILATPEA 841
+ W+ EA
Sbjct: 87 ALMPWVQQILEA 98
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 513 KNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAV 571
+N++ALL+L+ + + + P+ LP + +AGWG+T + GR S L +
Sbjct: 84 ENNLALLQLDGKVKPSRTIRPLALPSKRQVVA--AGTRCSMAGWGLTHQGGRLSRVLREL 141
Query: 572 QQKVFNSEECK-ARY--QELDPSSQICVGGKVGKDA-CKGDSGGPLTWMGSFDSAILARN 627
+V ++ C +R+ L PS +C+ A CKGDSGGPL
Sbjct: 142 DLQVLDTRMCNNSRFWNGSLSPS-MVCLAADSKDQAPCKGDSGGPLVCGKG--------R 192
Query: 628 YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
L G++S+ T P V T + ++ WI
Sbjct: 193 VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCK-ARY--QKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSF 124
R S L + +V ++ C +R+ L PS + C GDSGGPL
Sbjct: 133 RLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLV----- 187
Query: 125 DSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G++S+ C P V T + ++ WI
Sbjct: 188 ---CGKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 40/162 (24%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYERNG 733
++P+ LP + G +AGWGLT + S +L ++ V D +C NG
Sbjct: 102 IRPLALP--SKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG 159
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMG 793
+ +CL D +K Q C GDSGGPL+
Sbjct: 160 ---SLSPSMVCLAAD-----------------SKDQA---------PCKGDSGGPLV--- 187
Query: 794 SFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L G++S C + P V T + ++ WI
Sbjct: 188 -----CGKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 510 SGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELL 569
+G DI L+RL + ++ ++ PV LP + +R + I+ GWG
Sbjct: 83 NGLDKDIMLIRLRRPVTYSTHIAPVSLP---SRSRGVGSRCRIM-GWGKISTTTYPDVPH 138
Query: 570 AVQQKVFNSEECKARYQELDPSSQICVGG--KVGKDACKGDSGGPLTWMGSFDSAILARN 627
+ + C+ Y + S+ G K G+D C GDSGGPL G
Sbjct: 139 CTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPLICNGEMH------- 191
Query: 628 YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
G+V+ G + P VYT++ + WI
Sbjct: 192 ---GIVAGGSEPCGQHLKPAVYTKVFDYNNWI 220
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 96 SSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
S +C G K G+D+C+GDSGGPL G G+V+ G E CG+ P VY
Sbjct: 161 SRTLCAGILKGGRDTCHGDSGGPLICNGEMH----------GIVAGGSEPCGQHLKPAVY 210
Query: 155 TRMTYFLQWI 164
T++ + WI
Sbjct: 211 TKVFDYNNWI 220
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 770 LCVG-GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRT 828
LC G K G+D+C+GDSGGPL+ G + GIV+ G CG P VYT+
Sbjct: 164 LCAGILKGGRDTCHGDSGGPLICNGE----------MHGIVAGGSEPCGQHLKPAVYTKV 213
Query: 829 SYFLRWI 835
+ WI
Sbjct: 214 FDYNNWI 220
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 340 GKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
G+D+C+GDSGGPL G G+V+ G CG + P VY++ + WI
Sbjct: 172 GRDTCHGDSGGPLICNGEMH----------GIVAGGSEPCGQHLKPAVYTKVFDYNNWI 220
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 80 VFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVS 139
+ + CK + C G G DSC GDSGGPL D + L G+VS
Sbjct: 16 IVSEADCKKSWGSKITDVMTCAGAS-GVDSCMGDSGGPLVCQK--DGVWT----LAGIVS 68
Query: 140 YGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+G C T P VY+R+T + W+ LE
Sbjct: 69 WGSGVC-STSTPAVYSRVTALMPWVQQILE 97
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 22/97 (22%)
Query: 575 VFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPL------TWMGSFDSAILARNY 628
+ + +CK + C G G D+C GDSGGPL W
Sbjct: 16 IVSEADCKKSWGSKITDVMTCAGAS-GVDSCMGDSGGPLVCQKDGVWT------------ 62
Query: 629 LIGLVSYGP-TCGTKSENPGVYTRMTYFLQWILDHLE 664
L G+VS+G C T + P VY+R+T + W+ LE
Sbjct: 63 LAGIVSWGSGVCSTST--PAVYSRVTALMPWVQQILE 97
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
M G G DSC GDSGGPL D + L G+VS G C P VYSR +
Sbjct: 34 MTCAGASGVDSCMGDSGGPLVCQK--DGVWT----LAGIVSWGSGVCST-STPAVYSRVT 86
Query: 393 YFLRWI 398
+ W+
Sbjct: 87 ALMPWV 92
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTS 829
+ G G DSC GDSGGPL+ L GIVS G C P VY+R +
Sbjct: 34 MTCAGASGVDSCMGDSGGPLVCQK------DGVWTLAGIVSWGSGVCST-STPAVYSRVT 86
Query: 830 YFLRWILATPEA 841
+ W+ EA
Sbjct: 87 ALMPWVQQILEA 98
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 462 SPDHIVRLGE--------QNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK 513
+PD +V G Q V+ + D + G E P + L + N G
Sbjct: 47 APDWVVTAGHCISTSRTYQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACG-- 104
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWG-VTEDGRSSLELLAVQ 572
NDIAL++L +S + V LP + N ++GWG + G +L
Sbjct: 105 NDIALVKLSRSAQLGDKVQLANLPPAGDILPN--EAPCYISGWGRLYTGGPLPDKLQEAL 162
Query: 573 QKVFNSEECKAR--YQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLI 630
V + E C + + +C GG + C GDSGGPL + D +
Sbjct: 163 LPVVDYEHCSQYDWWGITVKKTMVCAGGDT-RSGCDGDSGGPLN-CPAADGSWQVHGVTS 220
Query: 631 GLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ ++G C T + P V+TR++ F+ WI
Sbjct: 221 FVSAFG--CNTI-KKPTVFTRVSAFIDWI 246
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 737 DTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFD 796
D + L V D C+ Y+ GI++ K +C GG + C+GDSGGPL + D
Sbjct: 156 DKLQEALLPVVDYEHCSQ-YDWWGITV--KKTMVCAGGDT-RSGCDGDSGGPLN-CPAAD 210
Query: 797 RSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
S + + G C ++ P V+TR S F+ WI T
Sbjct: 211 GSWQVHGVTSFVSAFG---CNTIKKPTVFTRVSAFIDWINET 249
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 97 SQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTR 156
+ +C GG + C GDSGGPL + D + + ++G C + P V+TR
Sbjct: 184 TMVCAGGDT-RSGCDGDSGGPLN-CPAADGSWQVHGVTSFVSAFG---CNTIKKPTVFTR 238
Query: 157 MTYFLQWI 164
++ F+ WI
Sbjct: 239 VSAFIDWI 246
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPA-SCGVYEIPGVYSRT 391
+C GG+ + C+GDSGGPL A + G+ S A C + P V++R
Sbjct: 186 VCAGGDT-RSGCDGDSGGPLN-----CPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRV 239
Query: 392 SYFLRWI 398
S F+ WI
Sbjct: 240 SAFIDWI 246
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 24/211 (11%)
Query: 462 SPDHIVRLGE--------QNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK 513
+PD +V G Q V+ + D + G E P + L + N G
Sbjct: 34 APDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACG-- 91
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQ 573
NDIAL++L +S + V LP + N ++GWG G + L QQ
Sbjct: 92 NDIALVKLSRSAQLGDKVQLANLPPAGDILPN--EAPCYISGWGRLYTGGPLPDKL--QQ 147
Query: 574 KVF---NSEECKAR--YQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNY 628
+ + E C + + +C GG + C GDSGGPL + D +
Sbjct: 148 ALLPTVDYEHCSQWDWWGITVKKTMVCAGGDT-RSGCNGDSGGPLN-CPAADGSWQVHGV 205
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
+ ++G C T + P V+TR++ F+ WI
Sbjct: 206 TSFVSAFG--CNTI-KKPTVFTRVSAFIDWI 233
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 763 IDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIP 822
I K +C GG + CNGDSGGPL + D S + + G C ++ P
Sbjct: 166 ITVKKTMVCAGGDT-RSGCNGDSGGPLN-CPAADGSWQVHGVTSFVSAFG---CNTIKKP 220
Query: 823 GVYTRTSYFLRWILAT 838
V+TR S F+ WI T
Sbjct: 221 TVFTRVSAFIDWIDET 236
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPA-SCGVYEIPGVYSRT 391
+C GG+ + CNGDSGGPL A + G+ S A C + P V++R
Sbjct: 173 VCAGGDT-RSGCNGDSGGPLN-----CPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRV 226
Query: 392 SYFLRWI 398
S F+ WI
Sbjct: 227 SAFIDWI 233
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 97 SQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTR 156
+ +C GG + C GDSGGPL + D + + ++G C + P V+TR
Sbjct: 171 TMVCAGGDT-RSGCNGDSGGPLN-CPAADGSWQVHGVTSFVSAFG---CNTIKKPTVFTR 225
Query: 157 MTYFLQWI 164
++ F+ WI
Sbjct: 226 VSAFIDWI 233
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGK----DSCYGDSGGPL 118
S + +PS+ L V + CKA + + C G K G+ D+C GDSGGP
Sbjct: 1 SVAEVQPSV-LQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPF 59
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYT---RMTYFLQWILDHL 168
S + R Y +G+VS+G E C + G YT R+ ++Q ++D L
Sbjct: 60 V----MKSPYNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVIDRL 107
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 581 CKARYQELDPSSQICVGGKVGK----DACKGDSGGPLTWMGSFDSAILARNYLIGLVSYG 636
CKA + + C G K G+ DAC+GDSGGP +++ R Y +G+VS+G
Sbjct: 23 CKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNN----RWYQMGIVSWG 78
Query: 637 PTCGTKSENPGVYT---RMTYFLQWILDHL 663
C + G YT R+ ++Q ++D L
Sbjct: 79 EGC-DRDGKYGFYTHVFRLKKWIQKVIDRL 107
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 763 IDTNKGQLCVGGKVGK----DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGM 818
I C G K G+ D+C GDSGGP + ++ R Y +GIVS G C
Sbjct: 29 IRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNN----RWYQMGIVSWG-EGCDR 83
Query: 819 LRIPGVYTRTSYFLRWI 835
G YT +WI
Sbjct: 84 DGKYGFYTHVFRLKKWI 100
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 287 EPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNG 346
+P++ + L +ERP T + DN Y G+ G D+C G
Sbjct: 6 QPSVLQVVNLPLVERPVCKASTRIR-------ITDNMFCAGYKPGEGKRG-----DACEG 53
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDHF 406
DSGGP S + R Y +G+VS G C G Y+ +WI +D
Sbjct: 54 DSGGPFV----MKSPYNNRWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKVID--- 105
Query: 407 VRLG 410
RLG
Sbjct: 106 -RLG 108
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 67/227 (29%)
Query: 494 QDIKVIQFLTHENYTDSGTKN---------DIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP TR
Sbjct: 80 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 139
Query: 545 NFENENTIVAGWGVTEDGRSSLELLAVQ--QKVFNSEECK-------------------- 582
T T + ELL Q + +F SEE K
Sbjct: 140 ALRLPPT-------TTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 192
Query: 583 -ARY----------QELDPSSQICVGG---KVGKDACKGDSGGPLTWMGSFDSAILARNY 628
A+Y E+ +C GG + C+GDSGGPL +R
Sbjct: 193 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR------SRFI 246
Query: 629 LIGLVSYG--PTCGTKSENPGV-------YTRMTYFLQWILDHLEDE 666
+G++S+G C + V + + L W+ + L+DE
Sbjct: 247 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 293
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 99 ICVGG---KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTEN----- 150
+C GG ++C GDSGGPL +R +G++S+G D K +
Sbjct: 215 LCTGGVSPYADPNTCRGDSGGPLIVHK------RSRFIQVGVISWGVVDVCKNQKRQKQV 268
Query: 151 ----PGVYTRMTYFLQWILDHLEDE 171
+ + L W+ + L+DE
Sbjct: 269 PAHARDFHINLFQVLPWLKEKLQDE 293
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 67/227 (29%)
Query: 494 QDIKVIQFLTHENYTDSGTKN---------DIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP TR
Sbjct: 279 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 338
Query: 545 NFENENTIVAGWGVTEDGRSSLELLAVQ--QKVFNSEECK-------------------- 582
T T + ELL Q + +F SEE K
Sbjct: 339 ALRLPPT-------TTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 391
Query: 583 -ARY----------QELDPSSQICVGG---KVGKDACKGDSGGPLTWMGSFDSAILARNY 628
A+Y E+ +C GG + C+GDSGGPL +R
Sbjct: 392 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR------SRFI 445
Query: 629 LIGLVSYG--PTCGTKSENPGV-------YTRMTYFLQWILDHLEDE 666
+G++S+G C + V + + L W+ + L+DE
Sbjct: 446 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 492
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 67/227 (29%)
Query: 494 QDIKVIQFLTHENYTDSGTKN---------DIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP TR
Sbjct: 287 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 346
Query: 545 NFENENTIVAGWGVTEDGRSSLELLAVQ--QKVFNSEECK-------------------- 582
T T + ELL Q + +F SEE K
Sbjct: 347 ALRLPPT-------TTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 399
Query: 583 -ARY----------QELDPSSQICVGG---KVGKDACKGDSGGPLTWMGSFDSAILARNY 628
A+Y E+ +C GG + C+GDSGGPL +R
Sbjct: 400 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR------SRFI 453
Query: 629 LIGLVSYG--PTCGTKSENPGV-------YTRMTYFLQWILDHLEDE 666
+G++S+G C + V + + L W+ + L+DE
Sbjct: 454 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 500
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 60 ALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDS-CYGDSGGPL 118
L ST R S L V+ ++ ++EKC Y + +C + S C GDSGG L
Sbjct: 134 GLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGAL 193
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G F G+ S+G +C + V+T++ +WI + +E
Sbjct: 194 ICDGVFQ----------GITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 44/219 (20%)
Query: 462 SPDHIVRLGEQNVITDPDCQNINGHEVCAP---PVQDIKVIQFLTHENYTDSGTKNDIAL 518
S D+ + LG N+ D D H+V P D+ +++ Y D +D+ L
Sbjct: 44 SDDYQIWLGRHNLSKDEDTAQF--HQVSDSFLDPQFDLSLLKKKYLRPYDD--ISHDLML 99
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGV--TEDGRSSLELLAVQQKVF 576
LRL + V + LP +GWG+ T R S L V+ ++
Sbjct: 100 LRLAQPARITDAVKILDLPTQEPKL----GSTCYTSGWGLISTFTNRGSGTLQCVELRLQ 155
Query: 577 NSEECKARYQE-----------LDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILA 625
++E+C Y E D S IC+ GDSGG L G F
Sbjct: 156 SNEKCARAYPEKMTEFVLCATHRDDSGSICL----------GDSGGALICDGVFQ----- 200
Query: 626 RNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
G+ S+G + + V+T++ +WI + +E
Sbjct: 201 -----GITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILATPE 840
C GDSGG L+ G F GI S G S C V+T+ +WI T E
Sbjct: 185 CLGDSGGALICDGVFQ----------GITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 67/227 (29%)
Query: 494 QDIKVIQFLTHENYTDSGTKN---------DIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP TR
Sbjct: 531 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 590
Query: 545 NFENENTIVAGWGVTEDGRSSLELLAVQ--QKVFNSEECK-------------------- 582
T T + ELL Q + +F SEE K
Sbjct: 591 ALRLPPT-------TTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 643
Query: 583 -ARY----------QELDPSSQICVGG---KVGKDACKGDSGGPLTWMGSFDSAILARNY 628
A+Y E+ +C GG + C+GDSGGPL +R
Sbjct: 644 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR------SRFI 697
Query: 629 LIGLVSYG--PTCGTKSENPGV-------YTRMTYFLQWILDHLEDE 666
+G++S+G C + V + + L W+ + L+DE
Sbjct: 698 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 744
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 568 LLAVQQKVFNSEECKARYQELDPSSQICVG-----GKVGKDACKGDSGGPLTWMGSFDSA 622
L V + CK + + C G GK G DAC+GDSGGP F++
Sbjct: 6 LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN- 63
Query: 623 ILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
R Y +G+VS+G C + G YT + +WI
Sbjct: 64 ---RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKKWI 96
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 2 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 59
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 60 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 96
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 758 RNGISIDTNKGQLCVG-----GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLG 812
++ I C G GK G D+C GDSGGP + F+ R Y +GIVS G
Sbjct: 20 KDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN----RWYQMGIVSWG 74
Query: 813 PSTCGMLRIPGVYTRTSYFLRWI 835
C G YT +WI
Sbjct: 75 -EGCDRDGKYGFYTHVFRLKKWI 96
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 286 GEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCN 345
G+P++ + L +ERP + T + DN Y + G D+C
Sbjct: 1 GQPSVLQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACE 48
Query: 346 GDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
GDSGGP F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 49 GDSGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 101
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 598 GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQ 657
GK G DAC+GDSGGP F++ R Y +G+VS+G C + G YT + +
Sbjct: 41 GKRG-DACEGDSGGPFVMKSPFNN----RWYQMGIVSWGEGC-DRDGKYGFYTHVFRLKK 94
Query: 658 WI 659
WI
Sbjct: 95 WI 96
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-----GKVGKDSCYGDSGGPLTWMG 122
+PS+ L V + CK + + C G GK G D+C GDSGGP
Sbjct: 2 QPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKS 59
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
F++ R Y +G+VS+G E C + G YT + +WI
Sbjct: 60 PFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWI 96
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 758 RNGISIDTNKGQLCVG-----GKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLG 812
++ I C G GK G D+C GDSGGP + F+ R Y +GIVS G
Sbjct: 20 KDSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFNN----RWYQMGIVSWG 74
Query: 813 PSTCGMLRIPGVYTRTSYFLRWI 835
C G YT +WI
Sbjct: 75 -EGCDRDGKYGFYTHVFRLKKWI 96
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 286 GEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCN 345
G+P++ + L +ERP + T + DN Y + G D+C
Sbjct: 1 GQPSVLQVVNLPIVERPVCKDSTRI-------RITDNMFCAGYKPDEGKRG-----DACE 48
Query: 346 GDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLD 403
GDSGGP F++ R Y +G+VS G C G Y+ +WI +D
Sbjct: 49 GDSGGPFVMKSPFNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVID 101
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 67/227 (29%)
Query: 494 QDIKVIQFLTHENYTDSGTKN---------DIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP TR
Sbjct: 512 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 571
Query: 545 NFENENTIVAGWGVTEDGRSSLELLAVQ--QKVFNSEECK-------------------- 582
T T + ELL Q + +F SEE K
Sbjct: 572 ALRLPPT-------TTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 624
Query: 583 -ARY----------QELDPSSQICVGG---KVGKDACKGDSGGPLTWMGSFDSAILARNY 628
A+Y E+ +C GG + C+GDSGGPL +R
Sbjct: 625 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR------SRFI 678
Query: 629 LIGLVSYG--PTCGTKSENPGV-------YTRMTYFLQWILDHLEDE 666
+G++S+G C + V + + L W+ + L+DE
Sbjct: 679 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 725
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 67/227 (29%)
Query: 494 QDIKVIQFLTHENYTDSGTKN---------DIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP TR
Sbjct: 521 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 580
Query: 545 NFENENTIVAGWGVTEDGRSSLELLAVQ--QKVFNSEECK-------------------- 582
T T + ELL Q + +F SEE K
Sbjct: 581 ALRLPPT-------TTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 633
Query: 583 -ARY----------QELDPSSQICVGG---KVGKDACKGDSGGPLTWMGSFDSAILARNY 628
A+Y E+ +C GG + C+GDSGGPL +R
Sbjct: 634 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKR------SRFI 687
Query: 629 LIGLVSYG--PTCGTKSENPGV-------YTRMTYFLQWILDHLEDE 666
+G++S+G C + V + + L W+ + L+DE
Sbjct: 688 QVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 734
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 5 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 52
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
N V V LP A +++GWG T+
Sbjct: 53 LNSRVATVSLPRSCAAA----GTECLISGWGNTK 82
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLGE N+ + G+E Q I + +TH N+ + NDI L++L
Sbjct: 48 VRLGEHNIDV------LEGNE------QFINAAKIITHPNFNGNTLDNDIMLIKLSSPAT 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE 560
N V V LP A +++GWG T+
Sbjct: 96 LNSRVATVSLPRSCAAA----GTECLISGWGNTK 125
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 29/111 (26%)
Query: 211 IIGGYVAKLGSIPWIARIAYS---------------RTPHCATNPEQISSVRLGEHDANS 255
I+GGY SIP+ + HC + Q VRLGEH+
Sbjct: 1 IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQ---VRLGEHNI-- 55
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN 306
D + Q I K+I+H +F+G + NDI L++L P LN
Sbjct: 56 --DVLEGNE------QFINAAKIITHPNFNGNT-LDNDIMLIKLSSPATLN 97
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 493 VQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTI 552
+Q +K+ + + Y NDI LL+L + ++ V VCLP + + +F T
Sbjct: 65 IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLP---SASDDFAAGTTC 121
Query: 553 V-AGWGVT 559
V GWG+T
Sbjct: 122 VTTGWGLT 129
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 50/198 (25%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYG-----------NAMTRNFENE----NTIVAGWGV 558
+DIALL+L + + + + P+CLP + R+ ENE ++ A +
Sbjct: 325 DDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVA 384
Query: 559 TEDGRSSLEL-----------LAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKG 607
+ ++ L + Q+K R E+ +C G + + CKG
Sbjct: 385 LNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVR--EVVTDQFLCSGTQEDESPCKG 442
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYG---PTCGTKSEN------------PGVYTRM 652
+SGG + F R + +GLVS+G P G+ +N P +
Sbjct: 443 ESGGAVFLERRF------RFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHIN 496
Query: 653 TYFLQ-WILDHLEDEVNI 669
+ +Q W+ HL D +N
Sbjct: 497 LFRMQPWLRQHLGDVLNF 514
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 50/198 (25%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYG-----------NAMTRNFENE----NTIVAGWGV 558
+DIALL+L + + + + P+CLP + R+ ENE ++ A +
Sbjct: 317 DDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVA 376
Query: 559 TEDGRSSLEL-----------LAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKG 607
+ ++ L + Q+K R E+ +C G + + CKG
Sbjct: 377 LNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVR--EVVTDQFLCSGTQEDESPCKG 434
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYG---PTCGTKSEN------------PGVYTRM 652
+SGG + F R + +GLVS+G P G+ +N P +
Sbjct: 435 ESGGAVFLERRF------RFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHIN 488
Query: 653 TYFLQ-WILDHLEDEVNI 669
+ +Q W+ HL D +N
Sbjct: 489 LFRMQPWLRQHLGDVLNF 506
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 61/172 (35%), Gaps = 27/172 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
P + + +Q + + Y NDI +L+L S N V LP A R N
Sbjct: 65 PTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLP---AQGRRLGNGVQ 121
Query: 552 IVA-GWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICV---GGKVGKDACKG 607
+A GWG+ R +L + C+ S +C G + G C G
Sbjct: 122 CLAMGWGLLGRNRGIASVLQELNVTVVTSLCR--------RSNVCTLVRGRQAG--VCFG 171
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
DSG PL G + G+ S+ P + + F+ WI
Sbjct: 172 DSGSPLVCNG----------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 61/172 (35%), Gaps = 27/172 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
P + + +Q + + Y NDI +L+L S N V LP A R N
Sbjct: 65 PTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLP---AQGRRLGNGVQ 121
Query: 552 IVA-GWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICV---GGKVGKDACKG 607
+A GWG+ R +L + C+ S +C G + G C G
Sbjct: 122 CLAMGWGLLGRNRGIASVLQELNVTVVTSLCR--------RSNVCTLVRGRQAG--VCFG 171
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
DSG PL G + G+ S+ P + + F+ WI
Sbjct: 172 DSGSPLVCNG----------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWG 557
DIALL+L++ E + Y+HPVCLP + V GWG
Sbjct: 98 RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWG 142
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
P + + +Q + Y NDI +L+L S N V LP A R N
Sbjct: 65 PTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLP---AQGRRLGNGVQ 121
Query: 552 IVA-GWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICV---GGKVGKDACKG 607
+A GWG+ R +L + C+ S +C G + G C G
Sbjct: 122 CLAMGWGLLGRNRGIASVLQELNVTVVTSLCR--------RSNVCTLVRGRQAG--VCFG 171
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
DSG PL G + G+ S+ P + + F+ WI
Sbjct: 172 DSGSPLVCNG----------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
P + + +Q + Y NDI +L+L S N V LP A R N
Sbjct: 65 PTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLP---AQGRRLGNGVQ 121
Query: 552 IVA-GWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICV---GGKVGKDACKG 607
+A GWG+ R +L + C+ S +C G + G C G
Sbjct: 122 CLAMGWGLLGRNRGIASVLQELNVTVVTSLCR--------RSNVCTLVRGRQAG--VCFG 171
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
DSG PL G + G+ S+ P + + F+ WI
Sbjct: 172 DSGSPLVCNG----------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 515 DIALLRLEKSPEWNGYVHPVCLP 537
DIAL++L+K ++ Y+HPVCLP
Sbjct: 26 DIALMKLKKPVAFSDYIHPVCLP 48
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLP 537
DIAL++L+K ++ Y+HPVCLP
Sbjct: 98 RDIALMKLKKPVAFSDYIHPVCLP 121
>pdb|1YF2|A Chain A, Three-dimensional Structure Of Dna Sequence Specificity
(s) Subunit Of A Type I Restriction-modification Enzyme
And Its Functional Implications
pdb|1YF2|B Chain B, Three-dimensional Structure Of Dna Sequence Specificity
(s) Subunit Of A Type I Restriction-modification Enzyme
And Its Functional Implications
Length = 425
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 372 VSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDHFVRLGEQNVITDPDCQNINGHKVCAP 431
V+ A G+ IP S FL +IL +++ +LG Q + + Q + K+ P
Sbjct: 109 VATNQAILGI--IPKDNILESEFLYYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLP 166
Query: 432 PVQDIKVIQFLTHENYTGTKNDIALLRLEKSPDHIVRL 469
P+++ K I + TK D + +EKS + + R+
Sbjct: 167 PLEEQKQIAKIL------TKIDEGIEIIEKSINKLERI 198
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 493 VQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE--- 549
+Q +K+ Q + + +NDI LL+L +++ V VCLP N +++
Sbjct: 62 IQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLP-------NVDDDFPP 114
Query: 550 NTIVA--GWGVTE 560
T+ A GWG T+
Sbjct: 115 GTVCATTGWGKTK 127
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
CNGD G PL+ G + + SLGP CG R P +TR + F WI
Sbjct: 171 CNGDQGTPLVCEG--------LAHGVASFSLGP--CG--RGPDFFTRVALFRDWI 213
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
C GDSGGPL+ G + GI S C P +TR + ++ WI +T
Sbjct: 172 CFGDSGGPLICDG----------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 110 CYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
C+GDSGGPL G + G+ S+ C P +TR+ ++ WI
Sbjct: 172 CFGDSGGPLICDG----------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWI 216
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
CNGD G PL+ G + + SLGP CG R P +TR + F WI
Sbjct: 171 CNGDGGTPLVCEG--------LAHGVASFSLGP--CG--RGPDFFTRVALFRDWI 213
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
CNGD G PL+ G + + SLGP CG R P +TR + F WI
Sbjct: 171 CNGDGGTPLVCEG--------LAHGVASFSLGP--CG--RGPDFFTRVALFRDWI 213
>pdb|2P3N|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3N|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3N|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3N|D Chain D, Thermotoga Maritima Impase Tm1415
pdb|2P3V|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3V|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3V|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3V|D Chain D, Thermotoga Maritima Impase Tm1415
Length = 256
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 319 YADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISART---YLIGLVSLG 375
YA+ G +N ++ V N + C G +G + + G F + RT ++G +L
Sbjct: 121 YAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALN 180
Query: 376 PASCGVYEIPGVYSRTSYFLRWILDHLD 403
A G R +F+ W ++ D
Sbjct: 181 AAYVGA-------GRVDFFVTWRINPWD 201
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 453 DIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQD---IKVIQFLTHENYTD 509
DI L+ E +P+ I +N+I +P+C I V P+ D I+ I T+++ +
Sbjct: 104 DIPLVVPEVNPEAIAEFRNRNIIANPNCSTIQ-MLVALKPIYDAVGIERINVTTYQSVSG 162
Query: 510 SGTKNDIALLRLEKSPEWNGY 530
+G K I L + + NGY
Sbjct: 163 AG-KAGIDELAGQTAKLLNGY 182
>pdb|3LY6|A Chain A, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|B Chain B, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|C Chain C, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
Length = 697
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
D+ YGD P++W+GS D +N+ V YG
Sbjct: 242 DNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYG 275
>pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|B Chain B, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|C Chain C, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|D Chain D, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|E Chain E, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|F Chain F, Human Tissue Transglutaminase In Gdp Bound Form
pdb|2Q3Z|A Chain A, Transglutaminase 2 Undergoes Large Conformational Change
Upon Activation
Length = 687
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
D+ YGD P++W+GS D +N+ V YG
Sbjct: 242 DNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYG 275
>pdb|3S3J|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3P|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3S|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
Length = 694
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
D+ YGD P++W+GS D +N+ V YG
Sbjct: 249 DNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYG 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,112,812
Number of Sequences: 62578
Number of extensions: 1282096
Number of successful extensions: 5185
Number of sequences better than 100.0: 354
Number of HSP's better than 100.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 2260
Number of HSP's gapped (non-prelim): 1616
length of query: 842
length of database: 14,973,337
effective HSP length: 107
effective length of query: 735
effective length of database: 8,277,491
effective search space: 6083955885
effective search space used: 6083955885
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)