RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy285
(842 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 151 bits (384), Expect = 2e-41
Identities = 67/200 (33%), Positives = 93/200 (46%), Gaps = 25/200 (12%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
++ VRLG + Q IKV + + H NY S NDIALL+L++
Sbjct: 51 NYTVRLGSHD------------LSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKR 98
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTED-GRSSLELLAVQQKVFNSEECK 582
+ V P+CLP V+GWG T + G L V + ++ ECK
Sbjct: 99 PVTLSDNVRPICLPSSGYN--LPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECK 156
Query: 583 ARYQELDP--SSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTC 639
Y + +C GG + GKDAC+GDSGGPL R L+G+VS+G C
Sbjct: 157 RAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLV------CNDNGRGVLVGIVSWGSGC 210
Query: 640 GTKSENPGVYTRMTYFLQWI 659
+ PGVYTR++ +L WI
Sbjct: 211 ARPNY-PGVYTRVSSYLDWI 229
Score = 103 bits (259), Expect = 7e-25
Identities = 70/248 (28%), Positives = 91/248 (36%), Gaps = 79/248 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HCATN--PEQISSVRLGEH 251
I+GG AK+GS PW + Y+ HC + P +VRLG H
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNY-TVRLGSH 59
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT--- 308
D +S+ Q I+V KVI H +++ NDIALL+L+RP L+
Sbjct: 60 DLSSNE----------GGGQVIKVKKVIVHPNYNPS-TYDNDIALLKLKRPVTLSDNVRP 108
Query: 309 -HLMSCCYYLAYADNGI-----SIDYNSGQ----MCV----------------------- 335
L S Y L V
Sbjct: 109 ICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDN 168
Query: 336 -----GGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
G GKD+C GDSGGPL + R L+G+VS G C PGVY+R
Sbjct: 169 MLCAGGLEGGKDACQGDSGGPLV------CNDNGRGVLVGIVSWGS-GCARPNYPGVYTR 221
Query: 391 TSYFLRWI 398
S +L WI
Sbjct: 222 VSSYLDWI 229
Score = 93.1 bits (232), Expect = 3e-21
Identities = 54/164 (32%), Positives = 68/164 (41%), Gaps = 41/164 (25%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYERN 732
V+P+CLP G V+GWG T + P +L VN + C Y
Sbjct: 105 NVRPICLP--SSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAY-SY 161
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLMW 791
G +I N LC GG + GKD+C GDSGGPL+
Sbjct: 162 GGTITDN-----------------------------MLCAGGLEGGKDACQGDSGGPLV- 191
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ + R L+GIVS G S C PGVYTR S +L WI
Sbjct: 192 -----CNDNGRGVLVGIVSWG-SGCARPNYPGVYTRVSSYLDWI 229
Score = 89.6 bits (223), Expect = 5e-20
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLDP--SSQICVGG-KVGKDSCYGDSGGPLTW 120
+E L V + ++ +CK Y + +C GG + GKD+C GDSGGPL
Sbjct: 133 SEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPLV- 191
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ R L+G+VS+G C + PGVYTR++ +L WI
Sbjct: 192 -----CNDNGRGVLVGIVSWG-SGCARPNYPGVYTRVSSYLDWI 229
Score = 38.8 bits (91), Expect = 0.006
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 22/77 (28%)
Query: 396 RWIL--------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY 447
RW+L ++ VRLG + Q IKV + + H NY
Sbjct: 35 RWVLTAAHCVYSSAPSNYTVRLGSHD------------LSSNEGGGQVIKVKKVIVHPNY 82
Query: 448 --TGTKNDIALLRLEKS 462
+ NDIALL+L++
Sbjct: 83 NPSTYDNDIALLKLKRP 99
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 143 bits (363), Expect = 9e-39
Identities = 68/201 (33%), Positives = 97/201 (48%), Gaps = 28/201 (13%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
+ VRLG ++ + + Q IKV + + H NY S NDIALL+L++
Sbjct: 52 NIRVRLGSHDLSSGEE-------------GQVIKVSKVIIHPNYNPSTYDNDIALLKLKE 98
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEEC 581
+ V P+CLP N V+GWG T +G SL L V + ++ C
Sbjct: 99 PVTLSDNVRPICLPSSNYN--VPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATC 156
Query: 582 KARY--QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT 638
+ Y + +C GG + GKDAC+GDSGGPL R L+G+VS+G
Sbjct: 157 RRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLV-------CNDGRWVLVGIVSWGSG 209
Query: 639 CGTKSENPGVYTRMTYFLQWI 659
C + PGVYTR++ +L WI
Sbjct: 210 CA-RPGKPGVYTRVSSYLDWI 229
Score = 114 bits (287), Expect = 1e-28
Identities = 66/249 (26%), Positives = 90/249 (36%), Gaps = 80/249 (32%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTP-----------------HCATNPEQIS-SVRLGEH 251
RI+GG A +GS PW + Y HC + + VRLG H
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLGSH 60
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT--- 308
D +S + Q I+V KVI H +++ NDIALL+L+ P L+
Sbjct: 61 DLSSGEE-----------GQVIKVSKVIIHPNYNPS-TYDNDIALLKLKEPVTLSDNVRP 108
Query: 309 ----------HLMSCCY-----YLAYADNGIS----------IDYN-------------S 330
+ C + + +
Sbjct: 109 ICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITD 168
Query: 331 GQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
+C GG GKD+C GDSGGPL R L+G+VS G C PGVY+
Sbjct: 169 NMLCAGGLEGGKDACQGDSGGPLV-------CNDGRWVLVGIVSWGS-GCARPGKPGVYT 220
Query: 390 RTSYFLRWI 398
R S +L WI
Sbjct: 221 RVSSYLDWI 229
Score = 93.9 bits (234), Expect = 1e-21
Identities = 50/166 (30%), Positives = 60/166 (36%), Gaps = 43/166 (25%)
Query: 673 HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP--SHILLGVNQLVYDRYLCTAIYE 730
V+P+CLP G V+GWG T + L VN + C Y
Sbjct: 104 DNVRPICLP--SSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYS 161
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPL 789
G LC GG + GKD+C GDSGGPL
Sbjct: 162 GGGA------------------------------ITDNMLCAGGLEGGKDACQGDSGGPL 191
Query: 790 MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ R L+GIVS G C PGVYTR S +L WI
Sbjct: 192 V-------CNDGRWVLVGIVSWGSG-CARPGKPGVYTRVSSYLDWI 229
Score = 87.3 bits (217), Expect = 3e-19
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDP--SSQICVGG-KVGKDSCYGDSGGPLT 119
S L V + ++ C+ Y + +C GG + GKD+C GDSGGPL
Sbjct: 133 SEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPLV 192
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
R L+G+VS+G C + PGVYTR++ +L WI
Sbjct: 193 -------CNDGRWVLVGIVSWG-SGCARPGKPGVYTRVSSYLDWI 229
Score = 37.3 bits (87), Expect = 0.017
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 23/77 (29%)
Query: 396 RWIL--------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY 447
RW+L + VRLG ++ + + Q IKV + + H NY
Sbjct: 36 RWVLTAAHCVRGSDPSNIRVRLGSHDLSSGEE-------------GQVIKVSKVIIHPNY 82
Query: 448 --TGTKNDIALLRLEKS 462
+ NDIALL+L++
Sbjct: 83 NPSTYDNDIALLKLKEP 99
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 119 bits (300), Expect = 1e-30
Identities = 60/170 (35%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
Q V + + H NY + T NDIALL+L+ V P+CLP + +
Sbjct: 64 GGEQKFDVKKVIVHPNY-NPDTDNDIALLKLKSPVTLGDTVRPICLP---TASSDLPVGT 119
Query: 551 TI-VAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDS 609
T V+GWG T+ L V V + E C++ Y + IC G GKDAC+GDS
Sbjct: 120 TCTVSGWGNTKTLGLPDTLQEVTVPVVSRETCRSAYGGTVTDNMICAGAG-GKDACQGDS 178
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWI 659
GGPL LIG+VS+G C + PGVYT ++ +L WI
Sbjct: 179 GGPLVCSD---------GELIGIVSWGYGCASG-NYPGVYTPVSSYLDWI 218
Score = 94.0 bits (234), Expect = 1e-21
Identities = 63/245 (25%), Positives = 84/245 (34%), Gaps = 84/245 (34%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HCATNPEQISSVRLGEHDA 253
I+GG A+ GS PW + S HC +N + + V LG H+
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVSNAKSVR-VVLGAHNI 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------- 306
Q V KVI H +++ P+ NDIALL+L+ P L
Sbjct: 60 VLRE----------GGEQKFDVKKVIVHPNYN--PDTDNDIALLKLKSPVTLGDTVRPIC 107
Query: 307 ----------GTHLMSCC-----------------------YYLAYADNGISIDYNSGQM 333
GT C + +
Sbjct: 108 LPTASSDLPVGTT---CTVSGWGNTKTLGLPDTLQEVTVPVVSRETCRSAYGGTVTDNMI 164
Query: 334 CVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSY 393
C G GKD+C GDSGGPL + + LIG+VS G C PGVY+ S
Sbjct: 165 CAGAG-GKDACQGDSGGPL---------VCSDGELIGIVSWGY-GCASGNYPGVYTPVSS 213
Query: 394 FLRWI 398
+L WI
Sbjct: 214 YLDWI 218
Score = 75.9 bits (187), Expect = 2e-15
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 33 VMIIKIKTRARSPFIPNIRFKSPIHLLALFS---------------TEDKRPSLELLAVQ 77
+ ++K+K+ +R PI L S T+ L V
Sbjct: 88 IALLKLKSPVT--LGDTVR---PICLPTASSDLPVGTTCTVSGWGNTKTLGLPDTLQEVT 142
Query: 78 QKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGL 137
V + E C++ Y + IC G GKD+C GDSGGPL + + LIG+
Sbjct: 143 VPVVSRETCRSAYGGTVTDNMICAGAG-GKDACQGDSGGPL---------VCSDGELIGI 192
Query: 138 VSYGPEDCGKTENPGVYTRMTYFLQWI 164
VS+G C PGVYT ++ +L WI
Sbjct: 193 VSWG-YGCASGNYPGVYTPVSSYLDWI 218
Score = 74.4 bits (183), Expect = 6e-15
Identities = 49/175 (28%), Positives = 62/175 (35%), Gaps = 49/175 (28%)
Query: 662 HLEDEVNIPEVHYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVY 720
L+ V + + V+P+CLP L G V+GWG T+ L V V
Sbjct: 92 KLKSPVTLGD--TVRPICLPTASSDLP---VGTTCTVSGWGNTKTLGLPDTLQEVTVPVV 146
Query: 721 DRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDS 780
R C + Y +C G GKD+
Sbjct: 147 SRETCRSAY--------------------------------GGTVTDNMICAGAG-GKDA 173
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
C GDSGGPL+ L+GIVS G C PGVYT S +L WI
Sbjct: 174 CQGDSGGPLVCSD---------GELIGIVSWGYG-CASGNYPGVYTPVSSYLDWI 218
Score = 33.6 bits (77), Expect = 0.30
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 431 PPVQDIKVIQFLTHENYTG-TKNDIALLRLEKS 462
Q V + + H NY T NDIALL+L+
Sbjct: 64 GGEQKFDVKKVIVHPNYNPDTDNDIALLKLKSP 96
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 70.3 bits (172), Expect = 1e-12
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 751 LCTAIYER-NGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIV 809
C N T C G + KD+C GDSGGP+ G R G+V
Sbjct: 196 TCAQYKGCANASDGATGLTGFCAG-RPPKDACQGDSGGPIFHKGE-----EGRVQR-GVV 248
Query: 810 SLGPSTCGMLRIPGVYTRTSYFLRWILA 837
S G CG IPGVYT S + WI A
Sbjct: 249 SWGDGGCGGTLIPGVYTNVSNYQDWIAA 276
Score = 68.7 bits (168), Expect = 3e-12
Identities = 63/256 (24%), Positives = 79/256 (30%), Gaps = 70/256 (27%)
Query: 208 EQRIIGGYVAKLGSIPWIARIA-----YSRTPHCATNPEQISSVRLGEHDANSDPDCSPD 262
RIIGG A G P + + Y C + V H A++ S D
Sbjct: 30 SSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSD 89
Query: 263 HRQCAPPVQD------IRVVKVISHEHFSGEPNMRNDIALLRLER--------------- 301
+ + D V + HE F N+ NDIA+L L R
Sbjct: 90 VNRVVVDLNDSSQAERGHVRTIYVHE-FYSPGNLGNDIAVLELARAASLPRVKITSFDAS 148
Query: 302 -------------------------PPRL--NGTHL---------MSCCYYLAYADNGIS 325
PR GT L +S C N
Sbjct: 149 DTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASD 208
Query: 326 IDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
C G KD+C GDSGGP+ G R G+VS G CG IP
Sbjct: 209 GATGLTGFCAG-RPPKDACQGDSGGPIFHKGE-----EGRVQ-RGVVSWGDGGCGGTLIP 261
Query: 386 GVYSRTSYFLRWILDH 401
GVY+ S + WI
Sbjct: 262 GVYTNVSNYQDWIAAM 277
Score = 68.4 bits (167), Expect = 5e-12
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 94 DPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGV 153
+ C G + KD+C GDSGGP+ G R G+VS+G CG T PGV
Sbjct: 211 TGLTGFCAG-RPPKDACQGDSGGPIFHKGE-----EGRVQ-RGVVSWGDGGCGGTLIPGV 263
Query: 154 YTRMTYFLQWILDH 167
YT ++ + WI
Sbjct: 264 YTNVSNYQDWIAAM 277
Score = 62.2 bits (151), Expect = 5e-10
Identities = 51/222 (22%), Positives = 71/222 (31%), Gaps = 39/222 (17%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEK-SPEWNGYVHPVCLPYG--NAMTRNFENEN 550
+ V HE Y+ NDIA+L L + + + N++T N
Sbjct: 104 ERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTN 163
Query: 551 TIVAGWGVTEDGR------SSLELLAVQQKVFNSEECKARYQEL------DPSSQICVGG 598
+GVT L V C + C G
Sbjct: 164 ---GTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAG- 219
Query: 599 KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TCGTKSENPGVYTRMTYFLQ 657
+ KDAC+GDSGGP+ G G+VS+G CG + PGVYT ++ +
Sbjct: 220 RPPKDACQGDSGGPIFHKGEEGRV------QRGVVSWGDGGCG-GTLIPGVYTNVSNYQD 272
Query: 658 WILDHLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAG 699
WI L + L Y G DT
Sbjct: 273 WIAAMT-----------NGLSYLQFRP-LGYRPTGFDTPRDP 302
>gnl|CDD|205605 pfam13427, DUF4111, Domain of unknown function (DUF4111). Although
the exact function of this domain is not known it
frequently appears downstream of the family,
Nucleotidyltransferase, pfam01909. It is also found in
species associated with methicillin-resistant bacteria.
Length = 106
Score = 29.5 bits (67), Expect = 2.1
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 157 MTYFLQWILDHLEDEWILDHLEDEVNI 183
+ F++ I D L ++W D DE N+
Sbjct: 10 KSDFIRAIKDTL-EQWPADIEGDERNV 35
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 31.1 bits (71), Expect = 2.9
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 230 YSRTPHCATNP-EQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFS 285
TP Q S+ + N+D C +P + + ++S +S
Sbjct: 2 AMSTPDNHGKKAPQFSAFKPLTAVQNADDCCCDGACSSSPTLSEDTP--LVSGTRYS 56
>gnl|CDD|233996 TIGR02750, TraN_Ftype, type-F conjugative transfer system
mating-pair stabilization protein TraN. TraN is a large
cysteine-rich outer membrane protein involved in the
mating-pair stabilization (adhesin) component of the
F-type conjugative plamid transfer system. TraN is
believed to interact with the core type IV secretion
system apparatus through the TraV protein.
Length = 572
Score = 30.2 bits (68), Expect = 5.4
Identities = 26/173 (15%), Positives = 43/173 (24%), Gaps = 18/173 (10%)
Query: 98 QICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRM 157
C G V + +G+ IS G Y + N +
Sbjct: 194 TNCAPGDVPYTWIEWNRPAFPIRLGAPCEGISVTVTNHGQPLYWTKQWPTCTNTTLLV-- 251
Query: 158 TYFLQWILDHLEDEWILDHLEDEVNIPEVHPEQHKNW--HLLPPKDKCGLASEQRIIGGY 215
+ + L V + + W P + KC + SEQ
Sbjct: 252 ------ATINCGNGRTTVPLALTVTVHSKEYISDEYWDNQCEPIQSKCFITSEQCTEPNQ 305
Query: 216 VAKLGSIPW-IARIAYSRTPHCATNPEQISSVRLGEHDANSDPDCSPDHRQCA 267
+G +P + Y T C S + + C C+
Sbjct: 306 TRVIGGVPTSLPCWKYRLTYQC-------GSAQSDTCATLVNQGCEQTASTCS 351
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
This model represents
3-phosphoshikimate-1-carboxyvinyltransferase (aroA),
which catalyzes the sixth of seven steps in the
shikimate pathway of the biosynthesis of chorimate.
Chorismate is last common precursor of all three
aromatic amino acids. Sequences scoring between the
trusted and noise cutoffs include fragmentary and
aberrant sequences in which generally well-conserved
motifs are missing or altererd, but no example of a
protein known to have a different function [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 409
Score = 29.9 bits (68), Expect = 5.8
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 352 LTWMGSFDSAISARTYLIGLVSLGPA-SCGVYEIPGVYSRTSYFL 395
L +GSF + +V G Y++PG YS ++FL
Sbjct: 187 LDLLGSFGVEVERSDGRKIVVPGGQKYGPQGYDVPGDYSSAAFFL 231
>gnl|CDD|227141 COG4804, COG4804, Predicted nuclease of restriction
endonuclease-like fold [General function prediction
only].
Length = 159
Score = 29.0 bits (65), Expect = 7.2
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 17/68 (25%)
Query: 673 HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
HY L + K F +T+ W V QL +R + + +YER
Sbjct: 3 HYKLL--LSVKNLDKRLFYEIETLRNRWS-------------VRQL--ERQIASQLYERT 45
Query: 733 GISIDTNK 740
+S D K
Sbjct: 46 LLSHDKEK 53
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 29.6 bits (66), Expect = 8.5
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 119 TWMGSFDSAISARNYLIGL--VSYGPEDCGKTENPGVYTRMTYFLQWIL 165
TW G FD +S Y IGL V P CGK N G + YFL I
Sbjct: 45 TWKGKFDFLMSCVGYAIGLGNVWRFPYLCGK--NGGGAFLIPYFLTLIF 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.441
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,612,551
Number of extensions: 4278004
Number of successful extensions: 2908
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2863
Number of HSP's successfully gapped: 30
Length of query: 842
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 737
Effective length of database: 6,280,432
Effective search space: 4628678384
Effective search space used: 4628678384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)