RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy285
(842 letters)
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 228 bits (583), Expect = 3e-67
Identities = 72/207 (34%), Positives = 109/207 (52%), Gaps = 3/207 (1%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLR 520
++ + +RLGE + T+ DC+ + CAPPV ++ + + L HE Y +DIALL+
Sbjct: 169 QNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLK 228
Query: 521 LEKSPEWNGYVHPVCLPYGNAM-TRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSE 579
L +S + ++ P+CLP + + + + V GWG TE+G SS LL +
Sbjct: 229 LNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRS 288
Query: 580 ECKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT- 638
C Y+ P SQ+CVGG +D+CKGDSGGPL + + G+VS G
Sbjct: 289 ACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVT 348
Query: 639 CGTKSENPGVYTRMTYFLQWILDHLED 665
CG S PG+YT + ++QWI D +
Sbjct: 349 CGQISL-PGLYTNVGEYVQWITDTMAS 374
Score = 187 bits (475), Expect = 3e-52
Identities = 70/282 (24%), Positives = 112/282 (39%), Gaps = 65/282 (23%)
Query: 187 HPEQHKNWHLLPPKDKCGLASEQRIIGGYVAKLGSIPWIARIAYSRTP------------ 234
H + + D CG QR+ GY KL S PW+A + Y +
Sbjct: 96 HNSKVMSLFKDENFD-CGNFLSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMIS 154
Query: 235 --------HCATN-PEQISSVRLGEHDANSDPDCSPD--HRQCAPPVQDIRVVKVISHEH 283
HC + +RLGEH +++ DC ++CAPPV ++ + K + HE
Sbjct: 155 ERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEK 214
Query: 284 FSGEPNMRNDIALLRLERP------------PRLNGTHLMSCCYYLAYA------DNGIS 325
+ ++ +DIALL+L R P + + + +NG S
Sbjct: 215 YD-ARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSS 273
Query: 326 -----------IDYN-----------SGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAIS 363
+ Q+CVGG +DSC GDSGGPL + +
Sbjct: 274 SDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYA 333
Query: 364 ARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
+ G+VS G +CG +PG+Y+ +++WI D + +
Sbjct: 334 PKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASN 375
Score = 143 bits (362), Expect = 4e-37
Identities = 52/167 (31%), Positives = 72/167 (43%), Gaps = 33/167 (19%)
Query: 673 HYVQPVCLPYGDGLK-YNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYER 731
+++P+CLP D LK + V GWG TE S +LL N + R C+ Y R
Sbjct: 237 KHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQAYRR 296
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+ + QLCVGG +DSC GDSGGPL
Sbjct: 297 A---VPLS-----------------------------QLCVGGGDLQDSCKGDSGGPLQA 324
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ + + GIVS G TCG + +PG+YT +++WI T
Sbjct: 325 PAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDT 371
Score = 126 bits (319), Expect = 2e-31
Identities = 41/126 (32%), Positives = 61/126 (48%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMG 122
+TE+ S LL + C Y++ P SQ+CVGG +DSC GDSGGPL
Sbjct: 267 TTENGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPA 326
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDEWILDHLEDEVN 182
+ + + G+VS G CG+ PG+YT + ++QWI D + +L+
Sbjct: 327 QYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGLLESRGPFEG 386
Query: 183 IPEVHP 188
P +P
Sbjct: 387 KPIPNP 392
Score = 74.9 bits (184), Expect = 2e-14
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 396 RWIL--------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY 447
R+IL D + +RLGE + T+ DC+ K CAPPV ++ + + L HE Y
Sbjct: 156 RYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKY 215
Query: 448 TGTK--NDIALLRLEKS 462
+DIALL+L +S
Sbjct: 216 DARHIMHDIALLKLNRS 232
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 209 bits (533), Expect = 9e-62
Identities = 72/203 (35%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGT--KNDIALLRLEKS 524
VRLGE N TDPDC D+ + + + H +Y D +DIAL+RL +
Sbjct: 84 VRLGEWNTATDPDCYG-AVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQ 142
Query: 525 PEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKAR 584
E+ Y+ PVCLP N + V GWG TE G+ S + V ++E+C
Sbjct: 143 VEFTNYIRPVCLPQPNE--EVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVVHAEQCAKT 200
Query: 585 YQELD---PSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGT 641
+ SSQ+C GG+ KD+C GDSGGPL + + +L GLVS+G TCGT
Sbjct: 201 FGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQ-----QFFLEGLVSFGATCGT 255
Query: 642 KSENPGVYTRMTYFLQWILDHLE 664
+ PG+YT++ + WI ++
Sbjct: 256 EGW-PGIYTKVGKYRDWIEGNIR 277
Score = 169 bits (430), Expect = 2e-47
Identities = 67/286 (23%), Positives = 97/286 (33%), Gaps = 85/286 (29%)
Query: 190 QHKNWHLLPPKDKCGLASEQ-RIIGGYVAKLGSIPWIARIAYSRTP-------------- 234
+++ LLP CG E +I+ G PW A I Y +
Sbjct: 3 RNRRPELLPND--CGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINN 60
Query: 235 -------HCATNPE-----QISSVRLGEHDANSDPDCSPDHRQ-CAPPVQDIRVVKVISH 281
HC ++ VRLGE + +DPDC R D+ + + I H
Sbjct: 61 RYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQH 120
Query: 282 EHFSGE-PNMRNDIALLRLERPPRLNG--------------------------------- 307
+ + +DIAL+RL R
Sbjct: 121 PDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQY 180
Query: 308 -THLM----------SCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMG 356
T C A + S Q+C GG KDSC GDSGGPL
Sbjct: 181 STIKQKLAVPVVHAEQCAKTFGAAGVRVR----SSQLCAGGEKAKDSCGGDSGGPLLAER 236
Query: 357 SFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
+ + + +L GLVS G +CG PG+Y++ + WI ++
Sbjct: 237 A-----NQQFFLEGLVSFGA-TCGTEGWPGIYTKVGKYRDWIEGNI 276
Score = 130 bits (329), Expect = 8e-34
Identities = 50/177 (28%), Positives = 71/177 (40%), Gaps = 39/177 (22%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
L +V Y++PVCLP + + G+ V GWG TE S I + V
Sbjct: 138 RLNRQVEFTN--YIRPVCLPQPN--EEVQVGQRLTVVGWGRTETGQYSTIKQKLAVPVVH 193
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSC 781
C + G+ + ++ QLC GG+ KDSC
Sbjct: 194 AEQCAKTFGAAGVRVRSS-----------------------------QLCAGGEKAKDSC 224
Query: 782 NGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GDSGGPL+ + + +L G+VS G TCG PG+YT+ + WI
Sbjct: 225 GGDSGGPLLA-----ERANQQFFLEGLVSFGA-TCGTEGWPGIYTKVGKYRDWIEGN 275
Score = 110 bits (277), Expect = 5e-27
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVGKDSCYGDSGGPLT 119
TE + S + V ++E+C + SSQ+C GG+ KDSC GDSGGPL
Sbjct: 174 RTETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLL 233
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ + + +L GLVS+G CG PG+YT++ + WI ++
Sbjct: 234 AERA-----NQQFFLEGLVSFGAT-CGTEGWPGIYTKVGKYRDWIEGNIR 277
Score = 63.9 bits (156), Expect = 3e-11
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
Query: 396 RWIL------------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLT 443
R+I+ + VRLGE N TDPDC D+ + + +
Sbjct: 61 RYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYG-AVRVCVPDKPIDLGIEETIQ 119
Query: 444 HENYTGT----KNDIALLRLEKS 462
H +Y +DIAL+RL +
Sbjct: 120 HPDYVDGSKDRYHDIALIRLNRQ 142
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 177 bits (450), Expect = 5e-49
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 29/230 (12%)
Query: 458 RLEKSPDHI-VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDI 516
+ + D I +R GE + +T+ + P Q+ K+ Q + H N+ ND+
Sbjct: 183 SYQSNLDAIKIRAGEWDTLTEKER----------LPYQERKIRQVIIHSNFNPKTVVNDV 232
Query: 517 ALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE---DGRSSLELLAVQQ 573
ALL L++ + +CLP ++ F++ +GWG E R S L +Q
Sbjct: 233 ALLLLDRPLVQADNIGTICLP---QQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQL 289
Query: 574 KVFNSEECKARYQELDP-------SSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILAR 626
+ ++C+A + + +C GG+ GKD C GD G PL + +R
Sbjct: 290 PTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPLFCPDPRNP---SR 346
Query: 627 NYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQ 676
+G+V++G CG + PGVY + +F WI ++ + + YV+
Sbjct: 347 YMQMGIVAWGIGCGDE-NVPGVYANVAHFRNWIDQEMQAK-GLSTTPYVE 394
Score = 128 bits (324), Expect = 3e-32
Identities = 67/305 (21%), Positives = 105/305 (34%), Gaps = 95/305 (31%)
Query: 177 LEDEVNIPEVHPEQHKNWHLLPPKDKCGLASEQ----RIIGG-YVAKLGSIPWIARIAYS 231
L + +P P L P CG+ +E+ +I G A+ G PW+ + +
Sbjct: 94 LPEGGVLPTPSPTPPVVPVLKPSF--CGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKA 151
Query: 232 RTP------------------------HC----ATNPEQISSVRLGEHDANSDPDCSPDH 263
HC +N + I +R GE D ++ +
Sbjct: 152 NVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIK-IRAGEWDTLTEKER---- 206
Query: 264 RQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----------------G 307
P Q+ ++ +VI H +F+ + ND+ALL L+RP
Sbjct: 207 ----LPYQERKIRQVIIHSNFN-PKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDS 261
Query: 308 TH--------------------LM----------SCCYYLAYADNGISIDYNSGQMCVGG 337
T L C L G+ + +C GG
Sbjct: 262 TECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG 321
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKD+C GD G PL D +R +G+V+ G CG +PGVY+ ++F W
Sbjct: 322 EQGKDTCTGDGGSPLFCP---DPRNPSRYMQMGIVAWG-IGCGDENVPGVYANVAHFRNW 377
Query: 398 ILDHL 402
I +
Sbjct: 378 IDQEM 382
Score = 109 bits (273), Expect = 1e-25
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 35/169 (20%)
Query: 673 HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTE---KKIPSHILLGVNQLVYDRYLCTAIY 729
+ +CLP F+ + +GWG E + S+IL + DR C A
Sbjct: 245 DNIGTICLPQQS---QIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADL 301
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPL 789
R G+ ++ +C GG+ GKD+C GD G PL
Sbjct: 302 RNT-------------------------RLGLKFVLDQTFVCAGGEQGKDTCTGDGGSPL 336
Query: 790 MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
D +R +GIV+ G CG +PGVY ++F WI
Sbjct: 337 FCP---DPRNPSRYMQMGIVAWGIG-CGDENVPGVYANVAHFRNWIDQE 381
Score = 96.1 bits (239), Expect = 3e-21
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 60 ALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDP-------SSQICVGGKVGKDSCYG 112
R S L +Q + +KC+A + + +C GG+ GKD+C G
Sbjct: 271 KKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQGKDTCTG 330
Query: 113 DSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
D G PL D +R +G+V++G CG PGVY + +F WI ++ +
Sbjct: 331 DGGSPLFCP---DPRNPSRYMQMGIVAWG-IGCGDENVPGVYANVAHFRNWIDQEMQAK 385
Score = 48.3 bits (115), Expect = 7e-06
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 22/78 (28%)
Query: 396 RWIL----------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHE 445
+L +LD +R GE + +T+ + P Q+ K+ Q + H
Sbjct: 172 SVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKER----------LPYQERKIRQVIIHS 221
Query: 446 NY--TGTKNDIALLRLEK 461
N+ ND+ALL L++
Sbjct: 222 NFNPKTVVNDVALLLLDR 239
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 160 bits (408), Expect = 3e-45
Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
V +G + + V + ++NY D +ND+AL+ L
Sbjct: 51 RLKVHVGTNYL---------------SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTN 95
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECK 582
++N V P+ L + E+ + GWG T G + L ++ V ++C+
Sbjct: 96 PIKFNDLVQPIKLS---TNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCE 152
Query: 583 ARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
+ S IC K G+ AC GDSGGPL A IG+VS+G C
Sbjct: 153 RDQWRVID-SHICTLTKRGEGACHGDSGGPLV----------ANGAQIGIVSFGSPCALG 201
Query: 643 SENPGVYTRMTYFLQWILDHLE 664
P VYTR++ F+ WI +L+
Sbjct: 202 --EPDVYTRVSSFVSWINANLK 221
Score = 106 bits (266), Expect = 5e-26
Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 84/248 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-------------------ATNPEQISSVRLGEH 251
I+GG A +G P+ + S + C +N ++ V +G +
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLK-VHVGTN 59
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT--- 308
+ V + ++++ + +RND+AL+ L P + N
Sbjct: 60 YLSE-------------SGDVYDVEDAVVNKNYD-DFLLRNDVALVHLTNPIKFNDLVQP 105
Query: 309 -HLMSCCYYLAYAD-----------NGIS-----------IDYN----------SGQMCV 335
L + L G + +C
Sbjct: 106 IKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICT 165
Query: 336 GGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGV-YEIPGVYSRTSYF 394
G+ +C+GDSGGPL G IG+VS G + C + P VY+R S F
Sbjct: 166 LTKRGEGACHGDSGGPLVANG----------AQIGIVSFG-SPCALGE--PDVYTRVSSF 212
Query: 395 LRWILDHL 402
+ WI +L
Sbjct: 213 VSWINANL 220
Score = 97.2 bits (243), Expect = 6e-23
Identities = 44/166 (26%), Positives = 61/166 (36%), Gaps = 49/166 (29%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYERN 732
VQP+ L D + E + GWG T + L + +V+ + C R
Sbjct: 102 LVQPIKLSTND---EDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR- 157
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
+ + +C K G+ +C+GDSGGPL+
Sbjct: 158 ----------------------VIDS----------HICTLTKRGEGACHGDSGGPLVAN 185
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
G +GIVS G S C L P VYTR S F+ WI A
Sbjct: 186 G----------AQIGIVSFG-SPCA-LGEPDVYTRVSSFVSWINAN 219
Score = 95.3 bits (238), Expect = 2e-22
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN 132
L ++ V ++C+ ++ S IC K G+ +C+GDSGGPL A
Sbjct: 138 LQEIELIVHPQKQCERDQWRVIDS-HICTLTKRGEGACHGDSGGPLV----------ANG 186
Query: 133 YLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
IG+VS+G C P VYTR++ F+ WI +L+
Sbjct: 187 AQIGIVSFG-SPCALG-EPDVYTRVSSFVSWINANLK 221
Score = 35.6 bits (83), Expect = 0.040
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 26/78 (33%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
+L +L+ V +G + + V + ++N
Sbjct: 34 NNVLTAAHCVDGLSNLNRLKVHVGTNYL---------------SESGDVYDVEDAVVNKN 78
Query: 447 Y--TGTKNDIALLRLEKS 462
Y +ND+AL+ L
Sbjct: 79 YDDFLLRNDVALVHLTNP 96
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 159 bits (405), Expect = 1e-44
Identities = 67/194 (34%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N I E Q I + + H Y +NDI LL+L +
Sbjct: 52 VTLGAHN---------IQRRE---NTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVR 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ 586
N V+PV LP R VAGWG R + L VQ +V +C +
Sbjct: 100 RNRNVNPVALPRAQEGLRP--GTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFG 157
Query: 587 ELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSEN 645
DP QICVG + K A KGDSGGPL L N G+VSYG + G
Sbjct: 158 SYDPRRQICVGDRRERKAAFKGDSGGPL----------LCNNVAHGIVSYGKSSGVP--- 204
Query: 646 PGVYTRMTYFLQWI 659
P V+TR++ FL WI
Sbjct: 205 PEVFTRVSSFLPWI 218
Score = 104 bits (263), Expect = 1e-25
Identities = 55/245 (22%), Positives = 76/245 (31%), Gaps = 84/245 (34%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQISSVRLGEH 251
IIGG ++ S P++A + HC + +V LG H
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSN---INVTLGAH 57
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT--- 308
+ Q I + I H ++ ++NDI LL+L R R N
Sbjct: 58 NIQRR----------ENTQQHITARRAIRHPQYNQR-TIQNDIMLLQLSRRVRRNRNVNP 106
Query: 309 -HLMSCCYYLAY------------ADNGIS----------IDYN-----------SGQMC 334
L L + + Q+C
Sbjct: 107 VALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQIC 166
Query: 335 VGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSY 393
VG K + GDSGGPL G+VS G S GV P V++R S
Sbjct: 167 VGDRRERKAAFKGDSGGPLLCNN----------VAHGIVSYGK-SSGVP--PEVFTRVSS 213
Query: 394 FLRWI 398
FL WI
Sbjct: 214 FLPWI 218
Score = 91.4 bits (228), Expect = 6e-21
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
+R + L VQ +V +C + DP QICVG + K + GDSGGPL
Sbjct: 129 RVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLC- 187
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
N G+VSYG + G P V+TR++ FL WI
Sbjct: 188 ---------NNVAHGIVSYG-KSSGVP--PEVFTRVSSFLPWI 218
Score = 89.9 bits (224), Expect = 2e-20
Identities = 47/164 (28%), Positives = 57/164 (34%), Gaps = 50/164 (30%)
Query: 674 YVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
V PV LP +GL+ G VAGWG + + L V V C I+
Sbjct: 103 NVNPVALPRAQEGLR---PGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIF--- 156
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLMW 791
G Q+CVG + K + GDSGGPL+
Sbjct: 157 GSYDPRR-----------------------------QICVGDRRERKAAFKGDSGGPLLC 187
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G S G P V+TR S FL WI
Sbjct: 188 NN----------VAHGIVSYGKS-SG--VPPEVFTRVSSFLPWI 218
Score = 38.6 bits (91), Expect = 0.004
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY--TGTKNDIALLRLEKS 462
V LG N I + Q I + + H Y +NDI LL+L +
Sbjct: 52 VTLGAHN-IQRRE-----------NTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRR 97
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 157 bits (399), Expect = 1e-43
Identities = 63/224 (28%), Positives = 92/224 (41%), Gaps = 27/224 (12%)
Query: 444 HENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLT 503
H++ + L D + LG+ D Q + V
Sbjct: 45 HQSLDPKDPTLRDSDLLSPSDFKIILGKHW-RLRSD-----------ENEQHLGVKHTTL 92
Query: 504 HENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNF-ENENTIVAGWGVTEDG 562
H Y + +ND+AL+ L +SP N +V P+CLP E IV+GWG
Sbjct: 93 HPQYDPNTFENDVALVELLESPVLNAFVMPICLP-----EGPQQEGAMVIVSGWGKQFLQ 147
Query: 563 RSSLELLAVQQKVFNSEECKARYQELD---PSSQICVGGKVG-KDACKGDSGGPLTWMGS 618
R L+ ++ + + C+ Y L IC G K G KDAC GDSGGP+ +
Sbjct: 148 RFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNR 207
Query: 619 FDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
+ YL+G VS+G CG K + GVY+ + + WI
Sbjct: 208 ERG----QWYLVGTVSWGDDCGKK-DRYGVYSYIHHNKDWIQRV 246
Score = 107 bits (269), Expect = 3e-26
Identities = 57/269 (21%), Positives = 80/269 (29%), Gaps = 101/269 (37%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HC----------------A 237
I G A+ G+ PWIA +++ HC
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 238 TNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALL 297
+P + LG+H Q + V H + ND+AL+
Sbjct: 61 LSPSDFK-IILGKHWRLRS----------DENEQHLGVKHTTLHPQYDPN-TFENDVALV 108
Query: 298 RLERPPRLN---------------GTH-----------------LM----------SCCY 315
L P LN G LM +C
Sbjct: 109 ELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQK 168
Query: 316 YLAYADNGISIDYNSGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLV 372
A ++ +C G G GKD+C GDSGGP+ + + YL+G V
Sbjct: 169 AYAPLKKKVT----RDMICAGEKEG--GKDACAGDSGGPMVTLNRERG----QWYLVGTV 218
Query: 373 SLGPASCGVYEIPGVYSRTSYFLRWILDH 401
S G CG + GVYS + WI
Sbjct: 219 SWG-DDCGKKDRYGVYSYIHHNKDWIQRV 246
Score = 92.0 bits (229), Expect = 6e-21
Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 39/163 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
+V P+CLP G EG IV+GWG + L+ + + D C Y
Sbjct: 119 FVMPICLPEGP----QQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLK 174
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMWM 792
+ + +C G K G KD+C GDSGGP++ +
Sbjct: 175 KKVTRD-----------------------------MICAGEKEGGKDACAGDSGGPMVTL 205
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ YL+G VS G CG GVY+ + WI
Sbjct: 206 NRER----GQWYLVGTVSWGDD-CGKKDRYGVYSYIHHNKDWI 243
Score = 90.0 bits (224), Expect = 3e-20
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLD---PSSQICVGGKVG-KDSCYGDSGGPL 118
+R L+ ++ + + C+ Y L IC G K G KD+C GDSGGP+
Sbjct: 143 KQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPM 202
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
+ + YL+G VS+G +DCGK + GVY+ + + WI
Sbjct: 203 VTLNRERG----QWYLVGTVSWG-DDCGKKDRYGVYSYIHHNKDWIQRV 246
Score = 39.6 bits (93), Expect = 0.003
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 403 DDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLE 460
D + LG+ D Q + V H Y ND+AL+ L
Sbjct: 64 SDFKIILGKHW-RLRSD-----------ENEQHLGVKHTTLHPQYDPNTFENDVALVELL 111
Query: 461 K 461
+
Sbjct: 112 E 112
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 155 bits (393), Expect = 7e-43
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 34/209 (16%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VR+G++N + G E +V + H +T DIA+LRL+
Sbjct: 52 VRVGDRNT------EQEEGGE------AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPIT 99
Query: 527 WNGYVHPVCLP-YGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKAR 584
+ V P CLP A + + IV+G+G T E G S L ++ + CK
Sbjct: 100 FRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS 159
Query: 585 YQELDPSSQICVGGKVG-KDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYGP 637
+ + C G +DAC+GDSGGP T+ ++ G+VS+G
Sbjct: 160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTY------------FVTGIVSWGE 207
Query: 638 TCGTKSENPGVYTRMTYFLQWILDHLEDE 666
C K G+YT++T FL+WI ++
Sbjct: 208 GCARK-GKYGIYTKVTAFLKWIDRSMKTR 235
Score = 97.3 bits (243), Expect = 8e-23
Identities = 52/264 (19%), Positives = 80/264 (30%), Gaps = 98/264 (37%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HCATNPEQISSVRLGEHDA 253
I+GG K G PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRF-KVRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
+ V VI H F+ E DIA+LRL+ P ++
Sbjct: 60 EQEE----------GGEAVHEVEVVIKHNRFTKE-TYDFDIAVLRLKTPITFR-MNVAPA 107
Query: 314 CYYLAYADNGISIDYNSGQMCV---------GGN------------VGKDSCN------- 345
C L D S + + + G V ++SC
Sbjct: 108 C--LPERDWAESTLM-TQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFII 164
Query: 346 ------------------GDSGGPL------TWMGSFDSAISARTYLIGLVSLGPASCGV 381
GDSGGP T+ ++ G+VS G C
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTY------------FVTGIVSWG-EGCAR 211
Query: 382 YEIPGVYSRTSYFLRWILDHLDDH 405
G+Y++ + FL+WI +
Sbjct: 212 KGKYGIYTKVTAFLKWIDRSMKTR 235
Score = 88.4 bits (220), Expect = 1e-19
Identities = 42/167 (25%), Positives = 58/167 (34%), Gaps = 40/167 (23%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAIYER 731
V P CLP D + K IV+G+G EK S L + DR C
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSF 162
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+ C A Y+ +D+C GDSGGP +
Sbjct: 163 I-------------ITQNMFC-AGYDTK-----------------QEDACQGDSGGPHVT 191
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
++ GIVS G C G+YT+ + FL+WI +
Sbjct: 192 ------RFKDTYFVTGIVSWGEG-CARKGKYGIYTKVTAFLKWIDRS 231
Score = 86.1 bits (214), Expect = 6e-19
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPL----- 118
E S L ++ + CK + + C G +D+C GDSGGP
Sbjct: 135 EKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFK 194
Query: 119 -TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
T+ ++ G+VS+G E C + G+YT++T FL+WI ++
Sbjct: 195 DTY------------FVTGIVSWG-EGCARKGKYGIYTKVTAFLKWIDRSMKTR 235
Score = 41.0 bits (97), Expect = 8e-04
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
+IL VR+G++N + +V + H +T
Sbjct: 35 FYILTAAHCLYQAKRFKVRVGDRN-TEQEE-----------GGEAVHEVEVVIKHNRFTK 82
Query: 450 TK--NDIALLRLEK 461
DIA+LRL+
Sbjct: 83 ETYDFDIAVLRLKT 96
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 154 bits (392), Expect = 9e-43
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 28/208 (13%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
+ +GE + + Q V +ENY + +ND+++++
Sbjct: 52 LVSLVVGEHD---------SSAAS---TVRQTHDVDSIFVNENYDPATLENDVSVIKTAV 99
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEEC 581
+ ++ V P+C P ++ + +GWG G L V + + C
Sbjct: 100 AITFDINVGPICAP---DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFC 156
Query: 582 KARYQELD-PSSQICVG---GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP 637
A Y IC G +D+C+GDSGGPL+ L+G+VS+G
Sbjct: 157 DAVYTSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSG-----IFSLVGIVSWGI 211
Query: 638 TCGTKSENPGVYTRMTYFLQWILDHLED 665
C + PGVY+R+ + WI D + +
Sbjct: 212 GCASGY--PGVYSRVGFHAGWITDTITN 237
Score = 114 bits (288), Expect = 7e-29
Identities = 49/261 (18%), Positives = 81/261 (31%), Gaps = 89/261 (34%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP------------------HC--ATNPEQISSVRLGE 250
I+GG A+ PW + + HC P +S + +GE
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVS-LVVGE 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN---- 306
HD+++ + Q V + +E++ + ND+++++ +
Sbjct: 60 HDSSAA----------STVRQTHDVDSIFVNENYDPA-TLENDVSVIKTAVAITFDINVG 108
Query: 307 ------------GTHLMSCCY-----YLAYADNGIS----------ID-------YNSGQ 332
+ Y S
Sbjct: 109 PICAPDPANDYVYRK----SQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDT 164
Query: 333 -----MCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
+C G +DSC GDSGGPL+ S L+G+VS G C
Sbjct: 165 IYDDMICATDNTGMTDRDSCQGDSGGPLSVKDG-----SGIFSLVGIVSWG-IGCAS-GY 217
Query: 385 PGVYSRTSYFLRWILDHLDDH 405
PGVYSR + WI D + ++
Sbjct: 218 PGVYSRVGFHAGWITDTITNN 238
Score = 96.5 bits (241), Expect = 1e-22
Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 40/167 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEK--KIPSHILLGVNQLVYDRYLCTAIYER 731
V P+C P ++ + + +GWG +L V + C A+Y
Sbjct: 106 NVGPICAPDPA---NDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTS 162
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+ I D +C A G +DSC GDSGGPL
Sbjct: 163 DTIY------------DDMIC-ATDNT---------------GMTDRDSCQGDSGGPLSV 194
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
S L+GIVS G C PGVY+R + WI T
Sbjct: 195 KDG-----SGIFSLVGIVSWGIG-CASGY-PGVYSRVGFHAGWITDT 234
Score = 86.9 bits (216), Expect = 3e-19
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 73 LLAVQQKVFNSEKCKARYQKLD-PSSQICVG---GKVGKDSCYGDSGGPLTWMGSFDSAI 128
L V + + C A Y IC G +DSC GDSGGPL+
Sbjct: 143 LRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDG----- 197
Query: 129 SARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
S L+G+VS+G C PGVY+R+ + WI D + +
Sbjct: 198 SGIFSLVGIVSWG-IGCASG-YPGVYSRVGFHAGWITDTITN 237
Score = 40.3 bits (95), Expect = 0.001
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 22/76 (28%)
Query: 396 RWIL--------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY 447
RW++ + + +GE + + Q V +ENY
Sbjct: 36 RWVVCAAHCMQGEAPALVSLVVGEHD-SSAAS-----------TVRQTHDVDSIFVNENY 83
Query: 448 --TGTKNDIALLRLEK 461
+ND+++++
Sbjct: 84 DPATLENDVSVIKTAV 99
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 154 bits (391), Expect = 1e-42
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 28/208 (13%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYT-DSGTKNDIALLRLEKSP 525
+R+G + +P HE YT D+G NDIAL++L
Sbjct: 53 IRMGT--------------LKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKV 98
Query: 526 EWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARY 585
N + P+CLP A + ++ +GWG+T+ G + L+ V + + ++C A Y
Sbjct: 99 VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAY 158
Query: 586 QELDPSSQ------ICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT 638
++ +C G + G KD+C+GDSGG L ++ S R ++ G+VS+G
Sbjct: 159 EKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETE----RWFVGGIVSWGSM 214
Query: 639 -CGTKSENPGVYTRMTYFLQWILDHLED 665
CG ++ GVYT++ ++ WI + + D
Sbjct: 215 NCG-EAGQYGVYTKVINYIPWIENIISD 241
Score = 115 bits (291), Expect = 3e-29
Identities = 56/262 (21%), Positives = 82/262 (31%), Gaps = 89/262 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-------TP-------HC----ATNPEQISSVRLGEHD 252
I GG AK G PW I H + + +R+G
Sbjct: 1 IYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALD-IRMGTLK 59
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP---------- 302
+ +P V HE ++ + NDIAL++L
Sbjct: 60 ------------RLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPI 107
Query: 303 --PRLNGTHLMS----------------------------------C-CYYLAYADNGIS 325
PR M C Y S
Sbjct: 108 CLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGS 167
Query: 326 IDYNSGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVY 382
+ + +C G G GKDSC GDSGG L ++ S R ++ G+VS G +CG
Sbjct: 168 V--TANMLCAGLESG--GKDSCRGDSGGALVFLDSETE----RWFVGGIVSWGSMNCGEA 219
Query: 383 EIPGVYSRTSYFLRWILDHLDD 404
GVY++ ++ WI + + D
Sbjct: 220 GQYGVYTKVINYIPWIENIISD 241
Score = 108 bits (271), Expect = 2e-26
Identities = 52/174 (29%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
L ++V I + P+CLP + + +GWGLT++ + L+ V+ + D
Sbjct: 93 KLNNKVVINS--NITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVD 150
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSC 781
CTA YE+ + V LC A E G GKDSC
Sbjct: 151 HQKCTAAYEKPPYPRGS-------VTANMLC-AGLE---------SG--------GKDSC 185
Query: 782 NGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GDSGG L+++ S R ++ GIVS G CG GVYT+ ++ WI
Sbjct: 186 RGDSGGALVFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
Score = 93.1 bits (232), Expect = 2e-21
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQ------ICVGGKVG-KDSCYGDSG 115
T+ + L+ V + + +KC A Y+K +C G + G KDSC GDSG
Sbjct: 131 LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSG 190
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
G L ++ S R ++ G+VS+G +CG+ GVYT++ ++ WI + + D
Sbjct: 191 GALVFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 241
Score = 36.8 bits (86), Expect = 0.017
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 17/58 (29%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY---TGTKNDIALLRLEK 461
+R+G K +P HE Y G NDIAL++L
Sbjct: 53 IRMGT--------------LKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNN 96
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 153 bits (390), Expect = 1e-42
Identities = 54/198 (27%), Positives = 74/198 (37%), Gaps = 29/198 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N+ D I+ F HENY NDIA++RL
Sbjct: 51 VVLGAHNIRED------------EATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVT 98
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKAR 584
+ V LP + GWG+ D + L V + ++ +C A
Sbjct: 99 LTAAIATVGLPSTDV----GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAV 154
Query: 585 YQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSE 644
Y + IC+ GK C GDSGGPL G+ S+G G ++
Sbjct: 155 YGIVTD-GNICIDSTGGKGTCNGDSGGPLN----------YNGLTYGITSFGAAAGCEAG 203
Query: 645 NPGVYTRMTYFLQWILDH 662
P +TR+TYFL WI
Sbjct: 204 YPDAFTRVTYFLDWIQTQ 221
Score = 120 bits (303), Expect = 6e-31
Identities = 52/243 (21%), Positives = 76/243 (31%), Gaps = 74/243 (30%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRT----------------PHCATNPEQISSVRLGEHDAN 254
I+GG A S P A + HC + V LG H+
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVD-VVLGAHNIR 59
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-------- 306
D I+ HE+++ + NDIA++RL P L
Sbjct: 60 ED----------EATQVTIQSTDFTVHENYNSF-VISNDIAVIRLPVPVTLTAAIATVGL 108
Query: 307 ---GTHLMSCCY-----YLAYADNGIS----------IDYN----------SGQMCVGGN 338
+ + + + GIS + G +C+
Sbjct: 109 PSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDST 168
Query: 339 VGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
GK +CNGDSGGPL G+ S G A+ P ++R +YFL WI
Sbjct: 169 GGKGTCNGDSGGPLN----------YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218
Query: 399 LDH 401
Sbjct: 219 QTQ 221
Score = 93.0 bits (232), Expect = 2e-21
Identities = 43/168 (25%), Positives = 54/168 (32%), Gaps = 49/168 (29%)
Query: 673 HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP--SHILLGVNQLVYDRYLCTAIYE 730
+ V LP D G GWGL S +L V+ + C A+Y
Sbjct: 101 AAIATVGLPSTD----VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY- 155
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
GI D N +C+ GK +CNGDSGGPL
Sbjct: 156 -----------------------------GIVTDGN---ICIDSTGGKGTCNGDSGGPLN 183
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GI S G + P +TR +YFL WI
Sbjct: 184 ----------YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221
Score = 90.7 bits (226), Expect = 1e-20
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMG 122
S S L V + ++ C A Y + IC+ GK +C GDSGGPL
Sbjct: 128 SDSALGISDVLRQVDVPIMSNADCDAVYGIVTDG-NICIDSTGGKGTCNGDSGGPLN--- 183
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
G+ S+G + P +TR+TYFL WI
Sbjct: 184 -------YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221
Score = 39.0 bits (92), Expect = 0.003
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 20/75 (26%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
WIL D V LG N+ D I+ F HENY
Sbjct: 34 EWILTAAHCMDGAGFVDVVLGAHNIRED------------EATQVTIQSTDFTVHENYNS 81
Query: 450 T--KNDIALLRLEKS 462
NDIA++RL
Sbjct: 82 FVISNDIAVIRLPVP 96
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 153 bits (389), Expect = 2e-42
Identities = 65/195 (33%), Positives = 88/195 (45%), Gaps = 29/195 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N I E Q I V + + H +Y D NDI LL+L + +
Sbjct: 52 VTLGAHN---------IMERE---RTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKAD 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARY 585
V P+ LP A + VAGWG + S+ +L V +V + E+C AR+
Sbjct: 100 ITDKVSPINLPRSLAEVKP--GMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF 157
Query: 586 QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSE 644
+ P +QIC G K++ GDSGGPL + G+VSYG GT
Sbjct: 158 KNYIPFTQICAGDPSKRKNSFSGDSGGPL----------VCNGVAQGIVSYGRNDGTT-- 205
Query: 645 NPGVYTRMTYFLQWI 659
P VYTR++ FL WI
Sbjct: 206 -PDVYTRISSFLSWI 219
Score = 101 bits (253), Expect = 3e-24
Identities = 57/256 (22%), Positives = 79/256 (30%), Gaps = 105/256 (41%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQISSVRLGEH 251
IIGG+ AK S P++A + + + HC + V LG H
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSIN---VTLGAH 57
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL------ 305
+ Q I V + I H ++ E + NDI LL+L R +
Sbjct: 58 NIMER----------ERTQQVIPVRRPIPHPDYNDE-TLANDIMLLKLTRKADITDKVSP 106
Query: 306 -----------NGT-------------------------HLMS---C-CYYLAYADNGIS 325
G + S C + Y
Sbjct: 107 INLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY------ 160
Query: 326 IDYNSGQMCVGG-NVGKDSCNGDSGGPL--TWMGSFDSAISARTYLIGLVSLGPASCGVY 382
Q+C G + K+S +GDSGGPL G+VS G
Sbjct: 161 --IPFTQICAGDPSKRKNSFSGDSGGPLVCNG------------VAQGIVSYG---RNDG 203
Query: 383 EIPGVYSRTSYFLRWI 398
P VY+R S FL WI
Sbjct: 204 TTPDVYTRISSFLSWI 219
Score = 87.2 bits (217), Expect = 2e-19
Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 55/167 (32%)
Query: 674 YVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
V P+ LP +K G VAGWG +P + L V+ V C A +
Sbjct: 103 KVSPINLPRSLAEVK---PGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF-- 157
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
I Q+C G K+S +GDSGGPL+
Sbjct: 158 -KNYIPFT-----------------------------QICAGDPSKRKNSFSGDSGGPLV 187
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G P VYTR S FL WI
Sbjct: 188 CNG------------VAQGIVSYG---RNDGTTPDVYTRISSFLSWI 219
Score = 86.8 bits (216), Expect = 2e-19
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMG 122
+ + +L V +V + EKC AR++ P +QIC G K+S GDSGGPL
Sbjct: 131 GVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPLV--- 187
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG P VYTR++ FL WI
Sbjct: 188 -------CNGVAQGIVSYG---RNDGTTPDVYTRISSFLSWI 219
Score = 38.6 bits (91), Expect = 0.004
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY--TGTKNDIALLRLEKS 462
V LG N I + + Q I V + + H +Y NDI LL+L +
Sbjct: 52 VTLGAHN-IMERE-----------RTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRK 97
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 152 bits (387), Expect = 3e-42
Identities = 38/184 (20%), Positives = 73/184 (39%), Gaps = 18/184 (9%)
Query: 486 HEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGY-VHPVCLPYGNAMTR 544
+ P + + + Y +NDIA+L L + + +G P LP + R
Sbjct: 60 TNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLP--DIEFR 117
Query: 545 NFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQE-LDPSSQICVGGKVGK 602
+ +V+G+G +L + Q V + +EC+ +Y C G
Sbjct: 118 PKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKV-GV 176
Query: 603 DACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
GD+G P ++ L+G+ +Y P + P V+T++ ++ WI D
Sbjct: 177 SLESGDAGDPTV----------QQDTLVGVAAYFPKRPEGA--PEVFTKVGSYVSWIQDI 224
Query: 663 LEDE 666
++ +
Sbjct: 225 IKKK 228
Score = 102 bits (256), Expect = 1e-24
Identities = 39/252 (15%), Positives = 66/252 (26%), Gaps = 90/252 (35%)
Query: 213 GGYVAKLGSIPWIARIAYSRTP-------------------HC--ATNPEQISSVRLGEH 251
GG + +PW + HC PE I ++
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIV-IQYEST 60
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLM 311
+ DP + V + + + M NDIA+L L RP +L+G
Sbjct: 61 NLWEDP------------GKSDPYVSHVYLSFYR-QETMENDIAILELSRPLKLDGLKSK 107
Query: 312 SCCYYLAYAD-------------------NGISID------------------YNSGQ-- 332
L + Y
Sbjct: 108 PAK--LPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLS 165
Query: 333 --MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
+ VG +GD+G P + L+G+ + P P V+++
Sbjct: 166 LQVFCAQKVGVSLESGDAGDPTV----------QQDTLVGVAAYFP-KRPE-GAPEVFTK 213
Query: 391 TSYFLRWILDHL 402
++ WI D +
Sbjct: 214 VGSYVSWIQDII 225
Score = 90.7 bits (226), Expect = 1e-20
Identities = 33/175 (18%), Positives = 55/175 (31%), Gaps = 48/175 (27%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVY 720
L + + + +P LP + G D +V+G+G + P H L V
Sbjct: 94 ELSRPLKLDGLK-SKPAKLPDIEFRPKT--GSDVLVSGYGDGQTMDPKDHDLKSAQLTVV 150
Query: 721 DRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDS 780
D C Y +S + C KVG
Sbjct: 151 DLDECRTKYGPIFLS------------LQVFCA--------------------QKVGVSL 178
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+GD+G P + + L+G+ + P P V+T+ ++ WI
Sbjct: 179 ESGDAGDPTV----------QQDTLVGVAAYFPK-RPEGA-PEVFTKVGSYVSWI 221
Score = 89.2 bits (222), Expect = 4e-20
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 69 PSLELLAVQQKVFNSEKCKARY-QKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSA 127
+L + Q V + ++C+ +Y C G GD+G P
Sbjct: 138 KDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKV-GVSLESGDAGDPTV-------- 188
Query: 128 ISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
++ L+G+ +Y + P V+T++ ++ WI D ++ +
Sbjct: 189 --QQDTLVGVAAYF-PKRPE-GAPEVFTKVGSYVSWIQDIIKKK 228
Score = 36.0 bits (84), Expect = 0.029
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 426 HKVCAPPVQDIKVIQFLTHENY--TGTKNDIALLRLEKS 462
+ P + + + Y +NDIA+L L +
Sbjct: 60 TNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRP 98
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 151 bits (385), Expect = 6e-42
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 465 HIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKS 524
+V LG + + ++H + ND+AL+++
Sbjct: 53 VVVYLGSAVQ---------------YEGEAVVNSERIISHSMFNPDTYLNDVALIKIP-H 96
Query: 525 PEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKAR 584
E+ + P+ LP G + FEN V+GWG + ++ L V +++ C
Sbjct: 97 VEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNT--DTVILQYTYNLVIDNDRCAQE 154
Query: 585 YQELD-PSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Y S IC GK C GDSGGP +N LIG+VS+ G +S
Sbjct: 155 YPPGIIVESTICGDTSDGKSPCFGDSGGPFVLSD--------KNLLIGVVSFVSGAGCES 206
Query: 644 ENPGVYTRMTYFLQWILDH 662
P ++R+T ++ WI +
Sbjct: 207 GKPVGFSRVTSYMDWIQQN 225
Score = 108 bits (272), Expect = 1e-26
Identities = 49/248 (19%), Positives = 80/248 (32%), Gaps = 80/248 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGE 250
II GY A G P+ A + + HC + + V LG
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVV-VYLGS 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLE--------RP 302
+ ++ISH F+ + ND+AL+++ +P
Sbjct: 60 AVQYE-------------GEAVVNSERIISHSMFNPD-TYLNDVALIKIPHVEYTDNIQP 105
Query: 303 PRLNGTHLMSCCY------------------YLAYADNGI------SIDYNSGQ-----M 333
RL ++ + L Y N + + +Y G +
Sbjct: 106 IRLPSGEELNNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTI 165
Query: 334 CVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSY 393
C + GK C GDSGGP + LIG+VS + P +SR +
Sbjct: 166 CGDTSDGKSPCFGDSGGPFVLSD--------KNLLIGVVSFVSGAGCESGKPVGFSRVTS 217
Query: 394 FLRWILDH 401
++ WI +
Sbjct: 218 YMDWIQQN 225
Score = 99.6 bits (249), Expect = 9e-24
Identities = 41/172 (23%), Positives = 59/172 (34%), Gaps = 44/172 (25%)
Query: 667 VNIPEV---HYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRY 723
+ IP V +QP+ LP G+ L FE V+GWG + + IL LV D
Sbjct: 92 IKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNT--DTVILQYTYNLVIDND 149
Query: 724 LCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNG 783
C Y I + +C GK C G
Sbjct: 150 RCAQEYPPGIIV-------------------------------ESTICGDTSDGKSPCFG 178
Query: 784 DSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
DSGGP + + L+G+VS P ++R + ++ WI
Sbjct: 179 DSGGPFVLSD--------KNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222
Score = 84.9 bits (211), Expect = 1e-18
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 73 LLAVQQKVFNSEKCKARYQKLD-PSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISAR 131
L V ++++C Y S IC GK C+GDSGGP +
Sbjct: 138 LQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGPFVLSD--------K 189
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
N LIG+VS+ ++ P ++R+T ++ WI +
Sbjct: 190 NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN 225
Score = 33.7 bits (78), Expect = 0.15
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 23/73 (31%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
+WIL V LG + + ++H +
Sbjct: 38 KWILTAAHCVHDAVSVVVYLGSAVQ---------------YEGEAVVNSERIISHSMFNP 82
Query: 450 T--KNDIALLRLE 460
ND+AL+++
Sbjct: 83 DTYLNDVALIKIP 95
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 152 bits (386), Expect = 6e-42
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 21/201 (10%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
LG + P VQ+ ++ + ++H + D DIALL LEK
Sbjct: 57 QWTAFLGLHDQSQRSA-----------PGVQERRLKRIISHPFFNDFTFDYDIALLELEK 105
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECK 582
E++ V P+ LP +A + V GWG T G +L L + +V N C+
Sbjct: 106 PAEYSSMVRPISLP--DASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCE 163
Query: 583 ARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGT 641
+ +CVG G D+C+GDSGGPL+ + + R + G+VS+G C
Sbjct: 164 NLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADG-----RIFQAGVVSWGDGCAQ 218
Query: 642 KSENPGVYTRMTYFLQWILDH 662
++ PGVYTR+ F WI ++
Sbjct: 219 RN-KPGVYTRLPLFRDWIKEN 238
Score = 105 bits (264), Expect = 1e-25
Identities = 64/261 (24%), Positives = 89/261 (34%), Gaps = 93/261 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HC--------ATNPEQISS 245
++GG A G PW + HC ++P Q +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQW-T 59
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
LG HD + P VQ+ R+ ++ISH F+ DIALL LE+P
Sbjct: 60 AFLGLHDQSQRSA---------PGVQERRLKRIISHPFFND-FTFDYDIALLELEKPAEY 109
Query: 306 N-----------------GTHLMSCCY-----YLAYADNG-----------ISID----- 327
+ G + + Y G I+
Sbjct: 110 SSMVRPISLPDASHVFPAGKA----IWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL 165
Query: 328 YN----SGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCG 380
MCVG G G DSC GDSGGPL+ + + R + G+VS G C
Sbjct: 166 LPQQITPRMMCVGFLSG--GVDSCQGDSGGPLSSVEA-----DGRIFQAGVVSWG-DGCA 217
Query: 381 VYEIPGVYSRTSYFLRWILDH 401
PGVY+R F WI ++
Sbjct: 218 QRNKPGVYTRLPLFRDWIKEN 238
Score = 87.3 bits (217), Expect = 2e-19
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGS 123
+L L + +V N C+ + +CVG G DSC GDSGGPL+ + +
Sbjct: 141 YGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEA 200
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
R + G+VS+G + C + PGVYTR+ F WI ++
Sbjct: 201 -----DGRIFQAGVVSWG-DGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 86.1 bits (214), Expect = 5e-19
Identities = 45/167 (26%), Positives = 61/167 (36%), Gaps = 42/167 (25%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
V+P+ LP + F GK V GWG T+ + IL V ++ C + +
Sbjct: 112 MVRPISLPDAS---HVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQ 168
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+ R +C + G G DSC GDSGGPL
Sbjct: 169 Q-------------ITPRMMC-VGFL---------SG--------GVDSCQGDSGGPLSS 197
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ + R + G+VS G C PGVYTR F WI
Sbjct: 198 VEA-----DGRIFQAGVVSWGDG-CAQRNKPGVYTRLPLFRDWIKEN 238
Score = 39.9 bits (94), Expect = 0.002
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
LG + P VQ+ ++ + ++H + DIALL LEK
Sbjct: 60 AFLGLHDQSQRSA-----------PGVQERRLKRIISHPFFNDFTFDYDIALLELEKP 106
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 152 bits (387), Expect = 7e-42
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 44/223 (19%)
Query: 461 KSPDHI-VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALL 519
K+ ++ LGE + +++ D Q +V Q + Y T +DIALL
Sbjct: 47 KNWRNLIAVLGEHD-LSEHD-----------GDEQSRRVAQVIIPSTYVPGTTNHDIALL 94
Query: 520 RLEKSPEWNGYVHPVCLPYGNAMTRNF-ENENTIVAGWGVT-EDGRSSLELLAVQQKVFN 577
RL + +V P+CLP R ++V+GWG + G ++LEL+ +
Sbjct: 95 RLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLM 154
Query: 578 SEECKARYQELDPSSQI-----CVG---GKVGKDACKGDSGGPL------TWMGSFDSAI 623
+++C + +++ S I C G G KD+CKGDSGGP TW
Sbjct: 155 TQDCLQQSRKVGDSPNITEYMFCAGYSDG--SKDSCKGDSGGPHATHYRGTW-------- 204
Query: 624 LARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
YL G+VS+G C T + GVYTR++ +++W+ + E
Sbjct: 205 ----YLTGIVSWGQGCATV-GHFGVYTRVSQYIEWLQKLMRSE 242
Score = 107 bits (270), Expect = 3e-26
Identities = 57/264 (21%), Positives = 74/264 (28%), Gaps = 97/264 (36%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-------------------ATNPEQISSVRLGEH 251
I+GG V G PW + + C N + LGEH
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNL-IAVLGEH 59
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----- 306
D + Q RV +VI + +DIALLRL +P L
Sbjct: 60 DLSEHD----------GDEQSRRVAQVIIPSTYVPG-TTNHDIALLRLHQPVVLTDHVVP 108
Query: 307 ---------------GTH------------------LM------------SCCYYLAYAD 321
LM
Sbjct: 109 LCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDS 168
Query: 322 NGISIDYNSGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS 378
I+ C G G KDSC GDSGGP + YL G+VS G
Sbjct: 169 PNIT----EYMFCAGYSDG--SKDSCKGDSGGPHA------THYRGTWYLTGIVSWG-QG 215
Query: 379 CGVYEIPGVYSRTSYFLRWILDHL 402
C GVY+R S ++ W+ +
Sbjct: 216 CATVGHFGVYTRVSQYIEWLQKLM 239
Score = 88.5 bits (220), Expect = 1e-19
Identities = 44/167 (26%), Positives = 64/167 (38%), Gaps = 35/167 (20%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAIYER 731
+V P+CLP + + ++V+GWG L ++ + L+ +N C +
Sbjct: 105 HVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRK 164
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
G S + + + C A Y G KDSC GDSGGP
Sbjct: 165 VGDSPN--------ITEYMFC-AGYS---------DG--------SKDSCKGDSGGPHA- 197
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
YL GIVS G C + GVYTR S ++ W+
Sbjct: 198 -----THYRGTWYLTGIVSWGQG-CATVGHFGVYTRVSQYIEWLQKL 238
Score = 85.8 bits (213), Expect = 1e-18
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQI-----CVG---GKVGKDSCYGDSGG 116
+ +LEL+ + ++ C + +K+ S I C G G KDSC GDSGG
Sbjct: 137 DRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDG--SKDSCKGDSGG 194
Query: 117 PLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
P + YL G+VS+G + C + GVYTR++ +++W+ + E
Sbjct: 195 PHA------THYRGTWYLTGIVSWG-QGCATVGHFGVYTRVSQYIEWLQKLMRSE 242
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEK 461
LGE + +++ D Q +V Q + Y +DIALLRL +
Sbjct: 54 AVLGEHD-LSEHD-----------GDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQ 98
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 151 bits (384), Expect = 9e-42
Identities = 60/198 (30%), Positives = 85/198 (42%), Gaps = 34/198 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N I E P Q I V + + H Y NDI LL+LE+ +
Sbjct: 52 VTLGAHN---------IKEQE---PTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAK 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTI--VAGWGVT-EDGRSSLELLAVQQKVFNSEECKA 583
V P+ LP A + VAGWG T G+ S L V+ V +C++
Sbjct: 100 RTRAVQPLRLPSNKAQVKP----GQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCES 155
Query: 584 RYQE-LDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGT 641
+ D + ++CVG ++ K + KGDSGGPL + G+VSYG G
Sbjct: 156 DLRHYYDSTIELCVGDPEIKKTSFKGDSGGPL----------VCNKVAQGIVSYGRNNGM 205
Query: 642 KSENPGVYTRMTYFLQWI 659
P T+++ F+ WI
Sbjct: 206 P---PRACTKVSSFVHWI 220
Score = 98.7 bits (247), Expect = 2e-23
Identities = 54/255 (21%), Positives = 76/255 (29%), Gaps = 102/255 (40%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQISSVRLGEH 251
IIGG+ AK S P++A + HC + +V LG H
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGSS---INVTLGAH 57
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL------ 305
+ ++ P Q I V + I H ++ + N NDI LL+LER +
Sbjct: 58 N----------IKEQEPTQQFIPVKRPIPHPAYNPK-NFSNDIMLLQLERKAKRTRAVQP 106
Query: 306 -----------NGTH------------------LM------------SCCYYLAYADNGI 324
G L Y
Sbjct: 107 LRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI- 165
Query: 325 SIDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYE 383
++CVG + K S GDSGGPL G+VS G
Sbjct: 166 -------ELCVGDPEIKKTSFKGDSGGPLV----------CNKVAQGIVSYG---RNNGM 205
Query: 384 IPGVYSRTSYFLRWI 398
P ++ S F+ WI
Sbjct: 206 PPRACTKVSSFVHWI 220
Score = 84.5 bits (210), Expect = 2e-18
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQ-KLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
+ S L V+ V KC++ + D + ++CVG ++ K S GDSGGPL
Sbjct: 131 APLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPLV-- 188
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG + G P T+++ F+ WI
Sbjct: 189 --------CNKVAQGIVSYG-RNNGMP--PRACTKVSSFVHWI 220
Score = 83.7 bits (208), Expect = 3e-18
Identities = 44/165 (26%), Positives = 56/165 (33%), Gaps = 50/165 (30%)
Query: 674 YVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
VQP+ LP +K G+ VAGWG T SH L V V + C +
Sbjct: 103 AVQPLRLPSNKAQVK---PGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL-- 157
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
D+ +LCVG ++ K S GDSGGPL+
Sbjct: 158 -RHYYDSTI----------------------------ELCVGDPEIKKTSFKGDSGGPLV 188
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G P T+ S F+ WI
Sbjct: 189 ----------CNKVAQGIVSYG---RNNGMPPRACTKVSSFVHWI 220
Score = 38.3 bits (90), Expect = 0.005
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
V LG N I + + P Q I V + + H Y NDI LL+LE+
Sbjct: 52 VTLGAHN-IKEQE-----------PTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERK 97
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 154 bits (391), Expect = 1e-41
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 34/224 (15%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK----- 513
+E + + + +G +V T + + H +
Sbjct: 122 VEGNREPTMYVGSTSVQTSRL-----------AKSKMLTPEHVFIHPGWKLLAVPEGRTN 170
Query: 514 --NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAV 571
NDIAL+RL+ + V P+CLP ++ + + +++GWG TE ++ L A
Sbjct: 171 FDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAA 230
Query: 572 QQKVFNSEECKARYQELDPSSQ---------ICVGGKVGKDACKGDSGGPLTWMGSFDSA 622
+ V +CK E + IC GG+ G D+CKGDSGG D
Sbjct: 231 RLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDK- 289
Query: 623 ILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
+ Y GLVS+GP CGT G+YTR+ ++ WI+ +++
Sbjct: 290 --TKFYAAGLVSWGPQCGT----YGLYTRVKNYVDWIMKTMQEN 327
Score = 107 bits (270), Expect = 1e-25
Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 32/177 (18%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
L+D V + V P+CLP +G +++GWG TEK+ + L V
Sbjct: 179 RLKDPVKMGP--TVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAP 236
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSC 781
C + + + +C GG+ G DSC
Sbjct: 237 LRKCKEVKVEKPTADAEAY----VFTPN-------------------MICAGGEKGMDSC 273
Query: 782 NGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GDSGG D++ + Y G+VS GP CG G+YTR ++ WI+ T
Sbjct: 274 KGDSGGAFAVQDPNDKT---KFYAAGLVSWGPQ-CGT---YGLYTRVKNYVDWIMKT 323
Score = 92.9 bits (231), Expect = 2e-20
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQ---------ICVGGKVGKDSCYGD 113
TE + ++ L A + V KCK + + IC GG+ G DSC GD
Sbjct: 217 RTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGD 276
Query: 114 SGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
SGG D + Y GLVS+G CG G+YTR+ ++ WI+ +++
Sbjct: 277 SGGAFAVQ---DPNDKTKFYAAGLVSWG-PQCGT---YGLYTRVKNYVDWIMKTMQEN 327
Score = 81.3 bits (201), Expect = 1e-16
Identities = 48/280 (17%), Positives = 77/280 (27%), Gaps = 99/280 (35%)
Query: 203 CG-----LASEQRIIGGYVAKLGSIPWIARIAYSR------TP-------HCATNPEQIS 244
CG +QRIIGG A + + PW H +
Sbjct: 70 CGVPREPFEEKQRIIGGSDADIKNFPWQVFFDNPWAGGALINEYWVLTAAHVVEGNREP- 128
Query: 245 SVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFS------GEPNMRNDIALLR 298
++ +G + + + V H + G N NDIAL+R
Sbjct: 129 TMYVGSTSVQTSRL---------AKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVR 179
Query: 299 LERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCV--------GGN------------ 338
L+ P ++ + C L + G + + +
Sbjct: 180 LKDPVKMG-PTVSPIC--L--PGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPV 234
Query: 339 VGKDSCNG----------------------------DS-----GGPLTWMGSFDSAISAR 365
C DS GG D +
Sbjct: 235 APLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQ---DPNDKTK 291
Query: 366 TYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
Y GLVS GP CG G+Y+R ++ WI+ + ++
Sbjct: 292 FYAAGLVSWGP-QCGT---YGLYTRVKNYVDWIMKTMQEN 327
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 151 bits (383), Expect = 1e-41
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 35/209 (16%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
LG P + + + + +Y NDIA++ LE
Sbjct: 52 KWTAILGLHMKSNLTS-----------PQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEF 100
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECK 582
+ Y+ P+ LP N +AGWG G ++ L + ++E C+
Sbjct: 101 KVNYTDYIQPISLP--EENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ 158
Query: 583 ARYQELD-PSSQICVGGKVG-KDACKGDSGGPL------TWMGSFDSAILARNYLIGLVS 634
+ E + + IC G + G D+C+GDSGGPL W +L G+ S
Sbjct: 159 QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRW------------FLAGVTS 206
Query: 635 YGPTCGTKSENPGVYTRMTYFLQWILDHL 663
+G C PGVY R++ F +WI L
Sbjct: 207 FGYECA-LPNRPGVYARVSRFTEWIQSFL 234
Score = 104 bits (263), Expect = 2e-25
Identities = 55/256 (21%), Positives = 80/256 (31%), Gaps = 86/256 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC--------------------ATNPEQISSVRLGE 250
I+GG AK G+ PW+ + Y C P + + LG
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKW-TAILGL 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN---- 306
H ++ P + +++ + H++ NDIA++ LE
Sbjct: 60 HMKSNLTS---------PQTVPRLIDEIVINPHYN-RRRKDNDIAMMHLEFKVNYTDYIQ 109
Query: 307 -------------GTHLMSCCY-----YLAYADNGISI----------------DYNSGQ 332
G + C + Y I
Sbjct: 110 PISLPEENQVFPPGRN----CSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYN 165
Query: 333 -----MCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPG 386
+C G G DSC GDSGGPL + R +L G+ S G C + PG
Sbjct: 166 ITENMICAGYEEGGIDSCQGDSGGPLM------CQENNRWFLAGVTSFG-YECALPNRPG 218
Query: 387 VYSRTSYFLRWILDHL 402
VY+R S F WI L
Sbjct: 219 VYARVSRFTEWIQSFL 234
Score = 88.8 bits (221), Expect = 6e-20
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 44/165 (26%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
Y+QP+ LP + F G++ +AGWG + + IL + + C
Sbjct: 107 YIQPISLPEEN---QVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPE 163
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM 790
I+ + +C G + G DSC GDSGGPLM
Sbjct: 164 YNIT-------------------------------ENMICAGYEEGGIDSCQGDSGGPLM 192
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ R +L G+ S G C + PGVY R S F WI
Sbjct: 193 C------QENNRWFLAGVTSFGYE-CALPNRPGVYARVSRFTEWI 230
Score = 85.7 bits (213), Expect = 7e-19
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD-PSSQICVGGKVG-KDSCYGDSGGPL---- 118
+ L + ++E+C+ + + + + IC G + G DSC GDSGGPL
Sbjct: 136 YQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQE 195
Query: 119 --TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
W +L G+ S+G +C PGVY R++ F +WI L
Sbjct: 196 NNRW------------FLAGVTSFG-YECALPNRPGVYARVSRFTEWIQSFL 234
Score = 39.5 bits (93), Expect = 0.003
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 23/79 (29%)
Query: 396 RWIL----------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHE 445
W++ LG P + + + +
Sbjct: 34 DWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTS-----------PQTVPRLIDEIVINP 82
Query: 446 NY--TGTKNDIALLRLEKS 462
+Y NDIA++ LE
Sbjct: 83 HYNRRRKDNDIAMMHLEFK 101
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 150 bits (381), Expect = 2e-41
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N I E Q I V + + H +Y NDI LL+L ++ +
Sbjct: 53 VTLGAHN---------IKAKE---ETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAK 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARY 585
V P+ LP NA + + VAGWG DG L V+ V + C++++
Sbjct: 101 RTRAVRPLNLPRRNAHVKP--GDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF 158
Query: 586 QE-LDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKS 643
Q + +++ICVG K+ + + DSGGPL + + G+VSYG T G+
Sbjct: 159 QSSYNRANEICVGDSKIKGASFEEDSGGPL----------VCKRAAAGIVSYGQTDGSA- 207
Query: 644 ENPGVYTRMTYFLQWI 659
P V+TR+ F+ WI
Sbjct: 208 --PQVFTRVLSFVSWI 221
Score = 86.0 bits (214), Expect = 4e-19
Identities = 39/167 (23%), Positives = 52/167 (31%), Gaps = 54/167 (32%)
Query: 674 YVQPVCLP-YGDGLKYNFEGKDTIVAGWGLT-EKKIPSHILLGVNQLVYDRYLCTAIYER 731
V+P+ LP +K G + VAGWG L V V +C + +
Sbjct: 104 AVRPLNLPRRNAHVK---PGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF-- 158
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
Y ++CVG K+ S DSGGPL+
Sbjct: 159 ---------------QSSY--------------NRANEICVGDSKIKGASFEEDSGGPLV 189
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G P V+TR F+ WI
Sbjct: 190 CKRA------------AAGIVSYG---QTDGSAPQVFTRVLSFVSWI 221
Score = 85.6 bits (213), Expect = 6e-19
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQ-KLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
T D L V+ V + C++++Q + +++ICVG K+ S DSGGPL
Sbjct: 132 TPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDSGGPLV-- 189
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
+ G+VSYG D P V+TR+ F+ WI
Sbjct: 190 --------CKRAAAGIVSYGQTDGSA---PQVFTRVLSFVSWI 221
Score = 81.4 bits (202), Expect = 2e-17
Identities = 47/261 (18%), Positives = 68/261 (26%), Gaps = 113/261 (43%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGE 250
IIGG S P++A + + HC ++ V LG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC--KGRSMT-VTLGA 57
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT-- 308
H+ + Q I V K I H ++ + + NDI LL+L R +
Sbjct: 58 HN----------IKAKEETQQIIPVAKAIPHPDYNPD-DRSNDIMLLKLVRNAKRTRAVR 106
Query: 309 --HLMSCCYYLAYADNGISIDYNSGQMC---------VGGN------------VGKDSCN 345
+L ++ G C G C
Sbjct: 107 PLNLPRRNAHVK-----------PGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCE 155
Query: 346 --------------------------GDSGGPLT--WMGSFDSAISARTYLIGLVSLGPA 377
DSGGPL G+VS G
Sbjct: 156 SQFQSSYNRANEICVGDSKIKGASFEEDSGGPLVCKRA------------AAGIVSYG-- 201
Query: 378 SCGVYEIPGVYSRTSYFLRWI 398
P V++R F+ WI
Sbjct: 202 -QTDGSAPQVFTRVLSFVSWI 221
Score = 37.9 bits (89), Expect = 0.007
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
V LG N I + Q I V + + H +Y NDI LL+L ++
Sbjct: 53 VTLGAHN-IKAKE-----------ETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRN 98
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 155 bits (393), Expect = 4e-41
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 14/189 (7%)
Query: 486 HEVCAPPVQDIKVIQFLTHENYT-DSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+ +P HE YT D+G NDIAL++L N + P+CLP A +
Sbjct: 219 LKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESF 278
Query: 545 NFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQ------ICVGG 598
++ +GWG+T+ G + L+ V + + ++C A Y++ +C G
Sbjct: 279 MRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGL 338
Query: 599 KVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-CGTKSENPGVYTRMTYFL 656
+ G KD+C+GDSGG L ++ S R ++ G+VS+G CG ++ GVYT++ ++
Sbjct: 339 ESGGKDSCRGDSGGALVFLDSETE----RWFVGGIVSWGSMNCG-EAGQYGVYTKVINYI 393
Query: 657 QWILDHLED 665
WI + + D
Sbjct: 394 PWIENIISD 402
Score = 120 bits (302), Expect = 3e-29
Identities = 58/271 (21%), Positives = 86/271 (31%), Gaps = 88/271 (32%)
Query: 203 CGL---ASEQRIIGGYVAKLGSIPWIARIAYSR-------TP-------HC----ATNPE 241
CGL + +I GG AK G PW I H +
Sbjct: 151 CGLSARTTGGQIYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDAS 210
Query: 242 QISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLER 301
+ +R+G + +P V HE ++ + NDIAL++L
Sbjct: 211 ALD-IRMGTLK------------RLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNN 257
Query: 302 P------------PRLNGTHLMS----------------------------------C-C 314
PR M C
Sbjct: 258 KVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTA 317
Query: 315 YYLAYADNGISIDYNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVS 373
Y S+ + +C G G KDSC GDSGG L ++ S R ++ G+VS
Sbjct: 318 AYEKPPYPRGSV--TANMLCAGLESGGKDSCRGDSGGALVFLDSETE----RWFVGGIVS 371
Query: 374 LGPASCGVYEIPGVYSRTSYFLRWILDHLDD 404
G +CG GVY++ ++ WI + + D
Sbjct: 372 WGSMNCGEAGQYGVYTKVINYIPWIENIISD 402
Score = 107 bits (268), Expect = 6e-25
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 33/175 (18%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
L ++V I + P+CLP + + +GWGLT++ + L+ V+ + D
Sbjct: 254 KLNNKVVINS--NITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVD 311
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDS 780
CTA YE+ Y R ++ LC G + G KDS
Sbjct: 312 HQKCTAAYEKPP----------------------YPRGSVT----ANMLCAGLESGGKDS 345
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
C GDSGG L+++ S R ++ GIVS G CG GVYT+ ++ WI
Sbjct: 346 CRGDSGGALVFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 396
Score = 95.6 bits (238), Expect = 5e-21
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQ------ICVGGKVG-KDSCYGDSG 115
T+ + L+ V + + +KC A Y+K +C G + G KDSC GDSG
Sbjct: 292 LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSG 351
Query: 116 GPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
G L ++ S R ++ G+VS+G +CG+ GVYT++ ++ WI + + D
Sbjct: 352 GALVFLDSETE----RWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 402
Score = 36.7 bits (85), Expect = 0.027
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 426 HKVCAPPVQDIKVIQFLTHENY---TGTKNDIALLRLEKS 462
K +P HE Y G NDIAL++L
Sbjct: 219 LKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK 258
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 149 bits (378), Expect = 6e-41
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 36/216 (16%)
Query: 461 KSPDHI-VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENY--TDSGTKNDIA 517
++ I V GE N+ + E Q VI+ + H N+ + +DIA
Sbjct: 44 ETGVKITVVAGEHNI------EETEHTE------QKRNVIRIIPHHNFNAAINTYNHDIA 91
Query: 518 LLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVF 576
LL L++ N YV P+C+ + + V+GWG GRS+L L ++ +
Sbjct: 92 LLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLV 151
Query: 577 NSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPL------TWMGSFDSAILARNYL 629
+ C + ++ C G G +D+C+GDSGGP T +L
Sbjct: 152 DRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTS------------FL 199
Query: 630 IGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
G++S+G C K G+YT+++ ++ WI + +
Sbjct: 200 TGIISWGEECAMK-GKYGIYTKVSRYVNWIKEKTKL 234
Score = 106 bits (267), Expect = 5e-26
Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 80/251 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP----------------HCATNPEQISSVRLGEHDAN 254
++GG AK G PW + HC +I+ V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT-VVAGEHNIE 59
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHF-SGEPNMRNDIALLRLER------------ 301
Q V+++I H +F + +DIALL L+
Sbjct: 60 ET----------EHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPIC 109
Query: 302 -PPRLNGTHLM--SCCY-----YLAYADNG-----------ISID-----YN----SGQM 333
+ + Y + + + +
Sbjct: 110 IADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMF 169
Query: 334 CVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
C G G G+DSC GDSGGP + + ++L G++S G C + G+Y++
Sbjct: 170 CAGFHEG--GRDSCQGDSGGPHV------TEVEGTSFLTGIISWG-EECAMKGKYGIYTK 220
Query: 391 TSYFLRWILDH 401
S ++ WI +
Sbjct: 221 VSRYVNWIKEK 231
Score = 89.2 bits (222), Expect = 4e-20
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 39/166 (23%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
YV P+C+ + + V+GWG + K + +L + + DR C +
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT 163
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
+ + C A + +G G+DSC GDSGGP +
Sbjct: 164 -------------ITNNMFC-AGFH---------EG--------GRDSCQGDSGGPHV-- 190
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ ++L GI+S G C M G+YT+ S ++ WI
Sbjct: 191 ----TEVEGTSFLTGIISWG-EECAMKGKYGIYTKVSRYVNWIKEK 231
Score = 84.2 bits (209), Expect = 2e-18
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGS 123
R +L L ++ + + C + ++ C G G +DSC GDSGGP
Sbjct: 135 HKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHV---- 190
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
+ + ++L G++S+G E+C G+YT+++ ++ WI + +
Sbjct: 191 --TEVEGTSFLTGIISWG-EECAMKGKYGIYTKVSRYVNWIKEKTKL 234
Score = 42.2 bits (100), Expect = 3e-04
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 22/76 (28%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
+WI+ + V GE N I + + Q VI+ + H N+
Sbjct: 34 KWIVTAAHCVETGVKITVVAGEHN-IEETE-----------HTEQKRNVIRIIPHHNFNA 81
Query: 450 TK----NDIALLRLEK 461
+DIALL L++
Sbjct: 82 AINTYNHDIALLELDE 97
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 148 bits (377), Expect = 6e-41
Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 30/196 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
+ LG ++ D + P Q ++ + H Y ND+ L++L++S
Sbjct: 49 IGLGLHSLEADQE-----------PGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVS 97
Query: 527 WNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVTEDGRSSLELLAVQQKVFNSEECKARY 585
+ + + + ++ N+ +V+GWG+ +GR L V V + E C Y
Sbjct: 98 ESDTIRSISIA-----SQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLY 152
Query: 586 QELDPSSQICVG-GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TCGTKS 643
L S C G G+ KD+C GDSGGPL + YL GLVS+G CG
Sbjct: 153 DPLYHPSMFCAGGGQDQKDSCNGDSGGPL----------ICNGYLQGLVSFGKAPCGQVG 202
Query: 644 ENPGVYTRMTYFLQWI 659
PGVYT + F +WI
Sbjct: 203 V-PGVYTNLCKFTEWI 217
Score = 93.7 bits (234), Expect = 1e-21
Identities = 40/103 (38%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWM 121
+ R L V V + E C Y L S C G G+ KDSC GDSGGPL
Sbjct: 125 LLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLI-- 182
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
YL GLVS+G CG+ PGVYT + F +WI
Sbjct: 183 --------CNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217
Score = 92.6 bits (231), Expect = 2e-21
Identities = 43/166 (25%), Positives = 60/166 (36%), Gaps = 53/166 (31%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
++ + + G +V+GWGL +L VN V +C+ +Y
Sbjct: 101 TIRSISIA-----SQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLY--- 152
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPLM- 790
+ C G G+ KDSCNGDSGGPL+
Sbjct: 153 DPLYHPS-----------------------------MFCAGGGQDQKDSCNGDSGGPLIC 183
Query: 791 -WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
YL G+VS G + CG + +PGVYT F WI
Sbjct: 184 NG------------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217
Score = 90.3 bits (225), Expect = 2e-20
Identities = 55/243 (22%), Positives = 74/243 (30%), Gaps = 81/243 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
II G S PW A + C +P+ ++ LG H +D
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQ 60
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRND---------------IALLRLERP 302
+ P Q + + H ++ + ND I + +
Sbjct: 61 E---------PGSQMVEASLSVRHPEYNRP-LLANDLMLIKLDESVSESDTIRSISIASQ 110
Query: 303 PRLNGTHLMSCCY--------YLAYADN----GISI------------DYNSGQMCVG-G 337
G C +S+ Y+ C G G
Sbjct: 111 CPTAGNS----CLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGG 166
Query: 338 NVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFL 395
KDSCNGDSGGPL YL GLVS G A CG +PGVY+ F
Sbjct: 167 QDQKDSCNGDSGGPLICNG------------YLQGLVSFGKAPCGQVGVPGVYTNLCKFT 214
Query: 396 RWI 398
WI
Sbjct: 215 EWI 217
Score = 39.0 bits (92), Expect = 0.003
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
+ LG ++ D + P Q ++ + H Y ND+ L++L++S
Sbjct: 49 IGLGLHSLEADQE-----------PGSQMVEASLSVRHPEYNRPLLANDLMLIKLDES 95
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 148 bits (376), Expect = 8e-41
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG + + E Q IKV + + HE+Y +DI LL+LEK E
Sbjct: 53 VILGAHD---------VRKRE---STQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVE 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTI--VAGWGVT-EDGRSSLELLAVQQKVFNSEECKA 583
V+ V LP + + AGWG T +S L V+ ++ + + C
Sbjct: 101 LTPAVNVVPLPSPSDFIHP----GAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACV- 155
Query: 584 RYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
Y+ + Q+CVG + A GDSGGPL L G+VSYG
Sbjct: 156 DYRYYEYKFQVCVGSPTTLRAAFMGDSGGPL----------LCAGVAHGIVSYGHPDAKP 205
Query: 643 SENPGVYTRMTYFLQWI 659
P ++TR++ ++ WI
Sbjct: 206 ---PAIFTRVSTYVPWI 219
Score = 102 bits (258), Expect = 6e-25
Identities = 51/253 (20%), Positives = 77/253 (30%), Gaps = 89/253 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGE 250
IIGG + S P++A + HC +V LG
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGRE---ITVILGA 57
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT-- 308
HD R+ Q I+V K I HE ++ +DI LL+LE+ L
Sbjct: 58 HD----------VRKRESTQQKIKVEKQIIHESYNSV-PNLHDIMLLKLEKKVELTPAVN 106
Query: 309 --HLMSCCYYLAY------------ADNGISID--------------------YNSGQM- 333
L S ++ + Y
Sbjct: 107 VVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQV 166
Query: 334 CVGG-NVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
CVG + + GDSGGPL G+VS G + P +++R
Sbjct: 167 CVGSPTTLRAAFMGDSGGPLLCAG------------VAHGIVSYG---HPDAKPPAIFTR 211
Query: 391 TSYFLRWILDHLD 403
S ++ WI ++
Sbjct: 212 VSTYVPWINAVIN 224
Score = 84.1 bits (209), Expect = 2e-18
Identities = 40/168 (23%), Positives = 53/168 (31%), Gaps = 56/168 (33%)
Query: 673 HYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYE 730
V V LP D + G AGWG T + P S+ L V + D C
Sbjct: 103 PAVNVVPLPSPSDFIH---PGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY 159
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPL 789
K Q+CVG + + GDSGGPL
Sbjct: 160 YEY---------------------------------KFQVCVGSPTTLRAAFMGDSGGPL 186
Query: 790 M--WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ GIVS G + P ++TR S ++ WI
Sbjct: 187 LCAG------------VAHGIVSYG---HPDAKPPAIFTRVSTYVPWI 219
Score = 81.8 bits (203), Expect = 1e-17
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMG 122
S L V+ ++ + + C Y+ + Q+CVG + + GDSGGPL
Sbjct: 132 GVRDPTSYTLREVELRIMDEKACV-DYRYYEYKFQVCVGSPTTLRAAFMGDSGGPLL--- 187
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG K P ++TR++ ++ WI
Sbjct: 188 -------CAGVAHGIVSYG-HPDAKP--PAIFTRVSTYVPWI 219
Score = 38.3 bits (90), Expect = 0.005
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
V LG + + + Q IKV + + HE+Y +DI LL+LEK
Sbjct: 53 VILGAHD-VRKRE-----------STQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKK 98
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 148 bits (375), Expect = 2e-40
Identities = 65/202 (32%), Positives = 95/202 (47%), Gaps = 26/202 (12%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
+ GE + ++ +E Q I V + + HEN+ + NDI+LL+L
Sbjct: 57 GLQIVAGELD---------MSVNE---GSEQIITVSKIILHENFDYNLLDNDISLLKLSG 104
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECK 582
S +N V P+ LP + IV GWG T E G + L V + + E+C+
Sbjct: 105 SLTFNDNVAPIALPEQGHTA----TGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCR 160
Query: 583 ARYQELD-PSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCG 640
A Y + S IC G G KD+C+GDSGGPL + YL G+VS+G C
Sbjct: 161 ADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDT------GSTYLAGIVSWGYGCA 214
Query: 641 TKSENPGVYTRMTYFLQWILDH 662
+ PGVYT ++Y + WI +
Sbjct: 215 -RPGYPGVYTEVSYHVDWIKAN 235
Score = 108 bits (271), Expect = 2e-26
Identities = 64/261 (24%), Positives = 83/261 (31%), Gaps = 96/261 (36%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HC-----ATNPEQISS 245
I+GG A LG P+ + HC NP +
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQ- 59
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP--- 302
+ GE D + + Q I V K+I HE+F + NDI+LL+L
Sbjct: 60 IVAGELDMSVN----------EGSEQIITVSKIILHENFD-YNLLDNDISLLKLSGSLTF 108
Query: 303 ---------PRLNGTHLMSC------------------------------CYYLAYADNG 323
P T C Y +
Sbjct: 109 NDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCR-ADYGADE 167
Query: 324 ISIDYNSGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCG 380
I +C G G GKDSC GDSGGPL + TYL G+VS G C
Sbjct: 168 IL----DSMICAGVPEG--GKDSCQGDSGGPLAASD------TGSTYLAGIVSWG-YGCA 214
Query: 381 VYEIPGVYSRTSYFLRWILDH 401
PGVY+ SY + WI +
Sbjct: 215 RPGYPGVYTEVSYHVDWIKAN 235
Score = 88.0 bits (219), Expect = 1e-19
Identities = 49/164 (29%), Positives = 58/164 (35%), Gaps = 44/164 (26%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
V P+ LP + D IV GWG +E +L V + C A Y +
Sbjct: 111 NVAPIALPEQG---HTA-TGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGAD 166
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMW 791
I +C G G KDSC GDSGGPL
Sbjct: 167 EIL-------------------------------DSMICAGVPEGGKDSCQGDSGGPLAA 195
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ TYL GIVS G C PGVYT SY + WI
Sbjct: 196 SD------TGSTYLAGIVSWG-YGCARPGYPGVYTEVSYHVDWI 232
Score = 84.6 bits (210), Expect = 2e-18
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLD-PSSQICVGGKVG-KDSCYGDSGGPLTWM 121
+E L V + + E C+A Y + S IC G G KDSC GDSGGPL
Sbjct: 137 SEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAAS 196
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
+ YL G+VS+G C + PGVYT ++Y + WI +
Sbjct: 197 DT------GSTYLAGIVSWG-YGCARPGYPGVYTEVSYHVDWIKAN 235
Score = 38.3 bits (90), Expect = 0.006
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 394 FLRWILDHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK-- 451
++ + GE ++ V Q I V + + HEN+
Sbjct: 47 VYGDDYENPSGLQIVAGELDM------------SVNEGSEQIITVSKIILHENFDYNLLD 94
Query: 452 NDIALLRLEKS 462
NDI+LL+L S
Sbjct: 95 NDISLLKLSGS 105
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 148 bits (375), Expect = 2e-40
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 36/217 (16%)
Query: 458 RLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIA 517
L + G + ++ + + H+NY S +DIA
Sbjct: 48 GLPLQDVWRIYSGILEL------------SDITKDTPFSQIKEIIIHQNYKVSEGNHDIA 95
Query: 518 LLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVF 576
L++L+ E+ + P+ LP + + N V GWG + E G L V +
Sbjct: 96 LIKLQAPLEYTEFQKPISLP--SKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLV 153
Query: 577 NSEECKARYQELD-PSSQICVGGKVG-KDACKGDSGGPL------TWMGSFDSAILARNY 628
+EEC+ RYQ+ +C G K G KDACKGDSGGPL W
Sbjct: 154 TNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMW------------R 201
Query: 629 LIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
L+G+ S+G C + E PGVYT++ ++ WIL+ +
Sbjct: 202 LVGITSWGEGCA-RREQPGVYTKVAEYMDWILEKTQS 237
Score = 100 bits (251), Expect = 7e-24
Identities = 49/265 (18%), Positives = 83/265 (31%), Gaps = 103/265 (38%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQISS--VRLG 249
I+GG + G PW + T HC + G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 250 EHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--- 306
+ + ++ ++I H+++ +DIAL++L+ P
Sbjct: 61 ILELSDI----------TKDTPFSQIKEIIIHQNYKV-SEGNHDIALIKLQAPLEYTEFQ 109
Query: 307 --------------GTHLMSCCY-----YLAYADNG-----------ISID-----YNSG 331
T+ C+ + ++ + Y
Sbjct: 110 KPISLPSKGDTSTIYTN----CWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDY 165
Query: 332 Q-----MCVG---GNVGKDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVSLGPA 377
+ +C G G GKD+C GDSGGPL W L+G+ S G
Sbjct: 166 KITQRMVCAGYKEG--GKDACKGDSGGPLVCKHNGMW------------RLVGITSWG-E 210
Query: 378 SCGVYEIPGVYSRTSYFLRWILDHL 402
C E PGVY++ + ++ WIL+
Sbjct: 211 GCARREQPGVYTKVAEYMDWILEKT 235
Score = 88.4 bits (220), Expect = 8e-20
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 42/168 (25%)
Query: 673 HYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLT-EKKIPSHILLGVNQLVYDRYLCTAIYE 730
+ +P+ LP + V GWG + EK +IL VN + C Y+
Sbjct: 107 EFQKPISLPSKG---DTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQ 163
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
I+ R +C A Y+ GKD+C GDSGGPL+
Sbjct: 164 DYKIT------------QRMVC-AGYKEG-----------------GKDACKGDSGGPLV 193
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ L+GI S G C PGVYT+ + ++ WIL
Sbjct: 194 ------CKHNGMWRLVGITSWGEG-CARREQPGVYTKVAEYMDWILEK 234
Score = 87.7 bits (218), Expect = 2e-19
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD-PSSQICVGGKVG-KDSCYGDSGGPL---- 118
E L V + +E+C+ RYQ +C G K G KD+C GDSGGPL
Sbjct: 137 EKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKH 196
Query: 119 --TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
W L+G+ S+G E C + E PGVYT++ ++ WIL+ +
Sbjct: 197 NGMW------------RLVGITSWG-EGCARREQPGVYTKVAEYMDWILEKTQS 237
Score = 37.2 bits (87), Expect = 0.013
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 23/77 (29%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
+W+L D + G + ++ + + H+N
Sbjct: 37 QWVLTAAHCFDGLPLQDVWRIYSGILELSDI------------TKDTPFSQIKEIIIHQN 84
Query: 447 YTGTK--NDIALLRLEK 461
Y ++ +DIAL++L+
Sbjct: 85 YKVSEGNHDIALIKLQA 101
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 147 bits (373), Expect = 3e-40
Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
V + + H+ Y + + DIALL+LE + + P+ LP + RN +
Sbjct: 69 EDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP--SKGERNVIYTD 126
Query: 551 TIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELD-PSSQICVGGKVG-KDACKG 607
V GWG + L + + +EEC+ RY+ IC G + G KDACKG
Sbjct: 127 CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKG 186
Query: 608 DSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILD 661
DSGGPL W +L+G+ S+G C + PGVYT + ++ WIL+
Sbjct: 187 DSGGPLSCKHNEVW------------HLVGITSWGEGCAQRE-RPGVYTNVVEYVDWILE 233
Query: 662 HLE 664
+
Sbjct: 234 KTQ 236
Score = 100 bits (251), Expect = 7e-24
Identities = 54/264 (20%), Positives = 79/264 (29%), Gaps = 103/264 (39%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQISS--VRLG 249
I+GG + G PW + + HC E V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 250 EHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--- 306
+ + V ++I H+ + DIALL+LE
Sbjct: 61 ILNQSEI----------KEDTSFFGVQEIIIHDQYKM-AESGYDIALLKLETTVNYTDSQ 109
Query: 307 --------------GTHLMSCCY-----YLAYADNG-----------ISID-----YNSG 331
T C+ Y D ++ + Y
Sbjct: 110 RPISLPSKGERNVIYTD----CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Query: 332 Q-----MCVG---GNVGKDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVSLGPA 377
+ +C G G GKD+C GDSGGPL W +L+G+ S G
Sbjct: 166 KITHKMICAGYREG--GKDACKGDSGGPLSCKHNEVW------------HLVGITSWG-E 210
Query: 378 SCGVYEIPGVYSRTSYFLRWILDH 401
C E PGVY+ ++ WIL+
Sbjct: 211 GCAQRERPGVYTNVVEYVDWILEK 234
Score = 87.6 bits (218), Expect = 1e-19
Identities = 40/169 (23%), Positives = 56/169 (33%), Gaps = 46/169 (27%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
+P+ LP D V GWG + + + L + C Y
Sbjct: 108 SQRPISLPSKG---ERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRG 164
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM- 790
+ I+ + +C A Y GKD+C GDSGGPL
Sbjct: 165 HKIT------------HKMIC-AGYREG-----------------GKDACKGDSGGPLSC 194
Query: 791 -WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ +L+GI S G C PGVYT ++ WIL
Sbjct: 195 KHNEVW--------HLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEK 234
Score = 85.7 bits (213), Expect = 7e-19
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD-PSSQICVGGKVG-KDSCYGDSGGPL---- 118
+ L + + +E+C+ RY+ IC G + G KD+C GDSGGPL
Sbjct: 137 LRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKH 196
Query: 119 --TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
W +L+G+ S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 197 NEVW------------HLVGITSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 36.4 bits (85), Expect = 0.023
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 431 PPVQDIKVIQFLTHENYT--GTKNDIALLRLEK 461
V + + H+ Y + DIALL+LE
Sbjct: 69 EDTSFFGVQEIIIHDQYKMAESGYDIALLKLET 101
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 146 bits (371), Expect = 5e-40
Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 30/195 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N I E Q ++VI+ H Y S +DI LL+L++
Sbjct: 53 VTLGAHN---------ITEEE---DTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARY 585
V + P VAGWG T S L V+ ++ + + C +
Sbjct: 101 LTLAVGTLPFPSQFNFVPP--GRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACS-HF 157
Query: 586 QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSE 644
++ D + Q+CVG + K A KGDSGGPL L G+VSYG +
Sbjct: 158 RDFDHNLQLCVGNPRKTKSAFKGDSGGPL----------LCAGVAQGIVSYGRSDAKP-- 205
Query: 645 NPGVYTRMTYFLQWI 659
P V+TR++++ WI
Sbjct: 206 -PAVFTRISHYRPWI 219
Score = 101 bits (255), Expect = 2e-24
Identities = 52/256 (20%), Positives = 77/256 (30%), Gaps = 105/256 (41%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGE 250
IIGG K S P++A + + HCA V LG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSIT---VTLGA 57
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL----- 305
H+ + Q + V+K H ++ + +DI LL+L+ L
Sbjct: 58 HN----------ITEEEDTWQKLEVIKQFRHPKYNTS-TLHHDIMLLKLKEKASLTLAVG 106
Query: 306 ------------NGT-------------------------HLMS---CCYYLAYADNGIS 325
G LM C ++ + N
Sbjct: 107 TLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNL-- 164
Query: 326 IDYNSGQMCVGGNVG-KDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVY 382
Q+CVG K + GDSGGPL G+VS G
Sbjct: 165 ------QLCVGNPRKTKSAFKGDSGGPLLCAG------------VAQGIVSYG---RSDA 203
Query: 383 EIPGVYSRTSYFLRWI 398
+ P V++R S++ WI
Sbjct: 204 KPPAVFTRISHYRPWI 219
Score = 84.5 bits (210), Expect = 1e-18
Identities = 40/167 (23%), Positives = 55/167 (32%), Gaps = 56/167 (33%)
Query: 674 YVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
V + P + + G+ VAGWG T P S L V + D C+ +
Sbjct: 104 AVGTLPFPSQFNFVP---PGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDF 160
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
+ QLCVG + K + GDSGGPL+
Sbjct: 161 DH---------------------------------NLQLCVGNPRKTKSAFKGDSGGPLL 187
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GIVS G + P V+TR S++ WI
Sbjct: 188 CAG------------VAQGIVSYG---RSDAKPPAVFTRISHYRPWI 219
Score = 81.0 bits (201), Expect = 2e-17
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMG 122
K S L V+ ++ + + C ++ D + Q+CVG + K + GDSGGPL
Sbjct: 132 GVLKPGSDTLQEVKLRLMDPQACS-HFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLL--- 187
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
G+VSYG D P V+TR++++ WI
Sbjct: 188 -------CAGVAQGIVSYGRSDAKP---PAVFTRISHYRPWI 219
Score = 38.7 bits (91), Expect = 0.004
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY--TGTKNDIALLRLEKS 462
V LG N IT+ + Q ++VI+ H Y + +DI LL+L++
Sbjct: 53 VTLGAHN-ITEEE-----------DTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEK 98
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 146 bits (370), Expect = 9e-40
Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK---NDIALLRLEK 523
V LG NV + + + + H +Y + DIALL LE
Sbjct: 56 VFLGHTNVEELM-------------KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 102
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKA 583
S + P+CLP + T V+G+GV E+ + +L V+ V N + C+
Sbjct: 103 SVTLGPNLLPICLP--DNDTFYDLGLMGYVSGFGVMEEKIAH-DLRFVRLPVANPQACEN 159
Query: 584 RYQELDPSSQI-----CVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP 637
+ + C G +DAC+GDSGG R G+VS+G
Sbjct: 160 WLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD----RWVATGIVSWGI 215
Query: 638 TCGTKSENPGVYTRMTYFLQWILDHLEDE 666
C G YT++ ++ WI +E+E
Sbjct: 216 GCSRG---YGFYTKVLNYVDWIKKEMEEE 241
Score = 98.1 bits (245), Expect = 5e-23
Identities = 47/261 (18%), Positives = 75/261 (28%), Gaps = 86/261 (32%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR-------TP-------HCATNPEQIS------SVRLGE 250
IIGG AK+G+ PW H E + V LG
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGH 60
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE--PNMRNDIALLRLERPPRLNG- 307
+ + + + +V H + + N DIALL LE L
Sbjct: 61 TNVEELM-----------KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 109
Query: 308 --------------------------------THLM----------SCCYYLAYADNGIS 325
L +C +L +
Sbjct: 110 LLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDV 169
Query: 326 IDYNSGQMCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
+ C G ++ +D+C GDSGG + + R G+VS G C
Sbjct: 170 F--SQNMFCAGHPSLKQDACQGDSGGVF----AVRDPNTDRWVATGIVSWG-IGCS--RG 220
Query: 385 PGVYSRTSYFLRWILDHLDDH 405
G Y++ ++ WI +++
Sbjct: 221 YGFYTKVLNYVDWIKKEMEEE 241
Score = 90.8 bits (226), Expect = 1e-20
Identities = 41/174 (23%), Positives = 60/174 (34%), Gaps = 38/174 (21%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
LE+ V + + P+CLP D + G V+G+G+ E+KI L V V +
Sbjct: 99 ELENSVTLGP--NLLPICLP--DNDTFYDLGLMGYVSGFGVMEEKIAH-DLRFVRLPVAN 153
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSC 781
C + C A + + +D+C
Sbjct: 154 PQACENWLRGKNRMD--------VFSQNMFC-AGHP-SL----------------KQDAC 187
Query: 782 NGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GDSGG + R GIVS G C R G YT+ ++ WI
Sbjct: 188 QGDSGGVFA----VRDPNTDRWVATGIVSWGIG-CS--RGYGFYTKVLNYVDWI 234
Score = 85.4 bits (212), Expect = 1e-18
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQI-----CVGGKVG-KDSCYGDSGG 116
E+K +L V+ V N + C+ + + C G +D+C GDSGG
Sbjct: 135 VMEEKIAH-DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGG 193
Query: 117 PLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
+ + R G+VS+G C + G YT++ ++ WI +E+E
Sbjct: 194 VF----AVRDPNTDRWVATGIVSWG-IGCSR--GYGFYTKVLNYVDWIKKEMEEE 241
Score = 36.5 bits (85), Expect = 0.026
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK-----NDIALLRLEK 461
V LG NV + + + + H +Y + DIALL LE
Sbjct: 56 VFLGHTNVEELM-------------KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 102
Query: 462 S 462
S
Sbjct: 103 S 103
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 146 bits (370), Expect = 1e-39
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 40/223 (17%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
+++S +VRLGE ++ + E D+ + + H NY+ S T NDIAL
Sbjct: 44 MDESKKLLVRLGEYDL------RRWEKWE------LDLDIKEVFVHPNYSKSTTDNDIAL 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT--IVAGWGVTEDG------RSSLELLA 570
L L + + + P+CLP R +V GWG + L
Sbjct: 92 LHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNF 151
Query: 571 VQQKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPL------TWMGSFDSAI 623
++ V EC + + +C G +DAC+GDSGGP+ TW
Sbjct: 152 IKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTW-------- 203
Query: 624 LARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
+L+GLVS+G CG N GVYT+++ +L WI H+ D+
Sbjct: 204 ----FLVGLVSWGEGCGLL-HNYGVYTKVSRYLDWIHGHIRDK 241
Score = 109 bits (274), Expect = 8e-27
Identities = 59/269 (21%), Positives = 90/269 (33%), Gaps = 102/269 (37%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HCATNPEQISSVRLGEHDA 253
+I G + + G PW + S+ HC +++ VRLGE+D
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKL-LVRLGEYDL 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSC 313
D+ + +V H ++S NDIALL L +P L+ ++
Sbjct: 60 RRW----------EKWELDLDIKEVFVHPNYSKS-TTDNDIALLHLAQPATLS-QTIVPI 107
Query: 314 CYYLAYADNGISIDYNSGQMCV-------------------------------------- 335
C L + +GQ +
Sbjct: 108 C--LPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV 165
Query: 336 -GGNV------------GKDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVSLGP 376
V +D+C GDSGGP+ TW +L+GLVS G
Sbjct: 166 MSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTW------------FLVGLVSWG- 212
Query: 377 ASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
CG+ GVY++ S +L WI H+ D
Sbjct: 213 EGCGLLHNYGVYTKVSRYLDWIHGHIRDK 241
Score = 85.4 bits (212), Expect = 1e-18
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 36/168 (21%)
Query: 674 YVQPVCLPYGD--GLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYER 731
+ P+CLP + N G++T+V GWG + L
Sbjct: 103 TIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVL------------- 149
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM 790
N ++ +V C+ + N +S + LC G +D+C GDSGGP++
Sbjct: 150 -------NFIKIPVV-PHNECSEVM-SNMVS----ENMLCAGILGDRQDACEGDSGGPMV 196
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
S +L+G+VS G CG+L GVYT+ S +L WI
Sbjct: 197 ------ASFHGTWFLVGLVSWGEG-CGLLHNYGVYTKVSRYLDWIHGH 237
Score = 84.6 bits (210), Expect = 2e-18
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPL--- 118
+ + L ++ V +C + + +C G +D+C GDSGGP+
Sbjct: 139 KEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVAS 198
Query: 119 ---TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
TW +L+GLVS+G E CG N GVYT+++ +L WI H+ D+
Sbjct: 199 FHGTW------------FLVGLVSWG-EGCGLLHNYGVYTKVSRYLDWIHGHIRDK 241
Score = 43.0 bits (102), Expect = 2e-04
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 20/74 (27%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY-- 447
W+L D VRLGE + + + D+ + + H NY
Sbjct: 35 SWVLTAAHCMDESKKLLVRLGEYD-LRRWE-----------KWELDLDIKEVFVHPNYSK 82
Query: 448 TGTKNDIALLRLEK 461
+ T NDIALL L +
Sbjct: 83 STTDNDIALLHLAQ 96
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 145 bits (368), Expect = 1e-39
Identities = 56/176 (31%), Positives = 73/176 (41%), Gaps = 12/176 (6%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P + + + HE Y DI+L L + VH VCLP +A +
Sbjct: 62 PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLP--DASYEFQPGDV 119
Query: 551 TIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELD--PSSQICVGGKVG-KDACK 606
V G+G DG S L Q + ++ C D +C G G DAC+
Sbjct: 120 MFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQ 179
Query: 607 GDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
GDSGGPL + D YL G+VS+G C K PGVYTR+T WI
Sbjct: 180 GDSGGPLVSSDARD-----IWYLAGIVSWGDECA-KPNKPGVYTRVTALRDWITSK 229
Score = 101 bits (253), Expect = 3e-24
Identities = 50/255 (19%), Positives = 72/255 (28%), Gaps = 90/255 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-------------------ATNPEQISSVRLGEH 251
I+GG + G PW A + + + C NP + + G
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWT-ASFGVT 59
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT--- 308
P + ++I HE + P+ DI+L L P
Sbjct: 60 IK--------------PSKMKRGLRRIIVHEKYK-HPSHDYDISLAELSSPVPYTNAVHR 104
Query: 309 -----------HLMSC------------------------------CYYLAYADNGISID 327
C ++ I+
Sbjct: 105 VCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAIT-- 162
Query: 328 YNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPG 386
+C G G D+C GDSGGPL + D YL G+VS G C PG
Sbjct: 163 --PRMLCAGSLEGKTDACQGDSGGPLVSSDARD-----IWYLAGIVSWG-DECAKPNKPG 214
Query: 387 VYSRTSYFLRWILDH 401
VY+R + WI
Sbjct: 215 VYTRVTALRDWITSK 229
Score = 92.2 bits (230), Expect = 3e-21
Identities = 48/176 (27%), Positives = 58/176 (32%), Gaps = 42/176 (23%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLT-EKKIPSHILLGVNQLV 719
L V V VCLP Y F+ G V G+G + L +
Sbjct: 91 ELSSPVPYTN--AVHRVCLPDAS---YEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTL 145
Query: 720 YDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKD 779
D C N + R LC A +G D
Sbjct: 146 IDATTCNEPQAYNDA-----------ITPRMLC-AGSL---------EG--------KTD 176
Query: 780 SCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+C GDSGGPL+ + D YL GIVS G C PGVYTR + WI
Sbjct: 177 ACQGDSGGPLVSSDARD-----IWYLAGIVSWG-DECAKPNKPGVYTRVTALRDWI 226
Score = 82.6 bits (205), Expect = 7e-18
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD--PSSQICVGGKVG-KDSCYGDSGGPLTWM 121
D L Q + ++ C D +C G G D+C GDSGGPL
Sbjct: 130 NDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSS 189
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
+ D YL G+VS+G ++C K PGVYTR+T WI
Sbjct: 190 DARD-----IWYLAGIVSWG-DECAKPNKPGVYTRVTALRDWITSK 229
Score = 35.2 bits (82), Expect = 0.048
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 431 PPVQDIKVIQFLTHENYT--GTKNDIALLRLEKS 462
P + + + HE Y DI+L L
Sbjct: 62 PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSP 95
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 144 bits (367), Expect = 2e-39
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 31/208 (14%)
Query: 462 SPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRL 521
P+ V LG+ N+ + + + V++ + H +Y + DI LLRL
Sbjct: 44 KPNLQVFLGKHNL------RQRESSQ------EQSSVVRAVIHPDYDAASHDQDIMLLRL 91
Query: 522 EKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTEDGRSSLELLAVQQKVFNSEE 580
+ + + + P+ L + + GWG T DG + + + EE
Sbjct: 92 ARPAKLSELIQPLPLE-----RDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREE 146
Query: 581 CKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT- 638
C+ Y + +C G K GKD+C+GDSGGPL + ++L GLVS+G
Sbjct: 147 CEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL----------VCGDHLRGLVSWGNIP 196
Query: 639 CGTKSENPGVYTRMTYFLQWILDHLEDE 666
CG+K E PGVYT + + WI ++ +
Sbjct: 197 CGSK-EKPGVYTNVCRYTNWIQKTIQAK 223
Score = 104 bits (263), Expect = 1e-25
Identities = 59/248 (23%), Positives = 79/248 (31%), Gaps = 86/248 (34%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
++ G S P+ A + S C +P V LG+H+
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLRQR- 59
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----------- 306
+ VV+ + H + + DI LLRL RP +L+
Sbjct: 60 ---------ESSQEQSSVVRAVIHPDYDAA-SHDQDIMLLRLARPAKLSELIQPLPLERD 109
Query: 307 ----GT------------------------HLMS---C-CYYLAYADNGISIDYNSGQMC 334
T HL+S C Y I+ +C
Sbjct: 110 CSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAY----PGQIT----QNMLC 161
Query: 335 VGG-NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSY 393
G GKDSC GDSGGPL +L GLVS G CG E PGVY+
Sbjct: 162 AGDEKYGKDSCQGDSGGPLVCGD----------HLRGLVSWGNIPCGSKEKPGVYTNVCR 211
Query: 394 FLRWILDH 401
+ WI
Sbjct: 212 YTNWIQKT 219
Score = 91.1 bits (227), Expect = 7e-21
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
T D + + + E+C+ Y + +C G K GKDSC GDSGGPL
Sbjct: 124 KTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLV-- 181
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
++L GLVS+G CG E PGVYT + + WI ++ +
Sbjct: 182 --------CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 223
Score = 90.7 bits (226), Expect = 1e-20
Identities = 43/166 (25%), Positives = 53/166 (31%), Gaps = 47/166 (28%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
+QP+ L + + GWG T + + R C Y
Sbjct: 100 LIQPLPLERDC----SANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQ- 154
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLMWM 792
I N LC G K GKDSC GDSGGPL+
Sbjct: 155 --ITQN-----------------------------MLCAGDEKYGKDSCQGDSGGPLVCG 183
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+L G+VS G CG PGVYT + WI T
Sbjct: 184 D----------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219
Score = 37.9 bits (89), Expect = 0.007
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEK 461
V LG+ N + + + V++ + H +Y DI LLRL +
Sbjct: 49 VFLGKHN-LRQRE-----------SSQEQSSVVRAVIHPDYDAASHDQDIMLLRLAR 93
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 145 bits (368), Expect = 2e-39
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 37/212 (17%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
+ V LG+ N+ + + + V HE + +NDIAL++L +
Sbjct: 65 TYRVALGKNNLEVEDE-----------AGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAE 113
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECK 582
+ E + CLP + + ++ V GWG +G + EL Q V + C
Sbjct: 114 TVELGDTIQVACLP--SEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCS 171
Query: 583 AR--YQELDPSSQICVGGKVGKDACKGDSGGPL------TWMGSFDSAILARNYLIGLVS 634
R + + +C GG AC GDSGGPL W + G+VS
Sbjct: 172 QRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQW------------DVRGIVS 219
Query: 635 --YGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
G +C T P V+TR++ ++ WI L+
Sbjct: 220 FGSGLSCNTFK-KPTVFTRVSAYIDWINQKLQ 250
Score = 116 bits (292), Expect = 3e-29
Identities = 58/276 (21%), Positives = 87/276 (31%), Gaps = 103/276 (37%)
Query: 203 CGLASEQ-----RIIGGYVAKLGSIPWIARIAYSRTP--------------------HCA 237
CG Q R++GG A S PW + Y R HC
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 238 TNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALL 297
+N V LG+++ + + + V + HE ++ +RNDIAL+
Sbjct: 61 SNTLTYR-VALGKNNLEVEDE---------AGSLYVGVDTIFVHEKWN-SFLVRNDIALI 109
Query: 298 RLERPPRLNGT--------------HLMSC------------------------------ 313
+L L T C
Sbjct: 110 KLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYAT 169
Query: 314 CYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPL------TWMGSFDSAISARTY 367
C + + +C GG+ +CNGDSGGPL W
Sbjct: 170 CSQRDWWGTTVK----ETMVCAGGDGVISACNGDSGGPLNCQADGQW------------D 213
Query: 368 LIGLVSLGP-ASCGVYEIPGVYSRTSYFLRWILDHL 402
+ G+VS G SC ++ P V++R S ++ WI L
Sbjct: 214 VRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249
Score = 94.2 bits (235), Expect = 1e-21
Identities = 41/174 (23%), Positives = 53/174 (30%), Gaps = 54/174 (31%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
+Q CLP V GWG P + L Q V D C+
Sbjct: 120 TIQVACLPSEG---SLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWW 176
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM- 790
+T +C GG +CNGDSGGPL
Sbjct: 177 GTTVKETM------------------------------VCAGGDGVISACNGDSGGPLNC 206
Query: 791 -----WMGSFDRSISARTYLLGIVSLGPS-TCGMLRIPGVYTRTSYFLRWILAT 838
W + GIVS G +C + P V+TR S ++ WI
Sbjct: 207 QADGQW------------DVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK 248
Score = 81.9 bits (203), Expect = 2e-17
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 21/103 (20%)
Query: 76 VQQKVFNSEKCKAR--YQKLDPSSQICVGGKVGKDSCYGDSGGPL------TWMGSFDSA 127
Q V + C R + + +C GG +C GDSGGPL W
Sbjct: 160 GLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPLNCQADGQW------- 212
Query: 128 ISARNYLIGLVSYGP-EDCGKTENPGVYTRMTYFLQWILDHLE 169
+ G+VS+G C + P V+TR++ ++ WI L+
Sbjct: 213 -----DVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ 250
Score = 39.1 bits (92), Expect = 0.003
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 19/75 (25%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYT- 448
+L + + V LG+ N+ + + + V HE +
Sbjct: 51 NHVLTAAHCISNTLTYRVALGKNNLEVEDE-----------AGSLYVGVDTIFVHEKWNS 99
Query: 449 -GTKNDIALLRLEKS 462
+NDIAL++L ++
Sbjct: 100 FLVRNDIALIKLAET 114
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 144 bits (365), Expect = 5e-39
Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 36/212 (16%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLR 520
+ +V GE + + +Q +K+ + + Y NDI LL+
Sbjct: 60 VTTSDVVVAGEFDQGSSS------------EKIQKLKIAKVFKNSKYNSLTINNDITLLK 107
Query: 521 LEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT--EDGRSSLELLAVQQKVFNS 578
L + ++ V VCLP +A + GWG+T + + L + ++
Sbjct: 108 LSTAASFSQTVSAVCLP--SASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSN 165
Query: 579 EECKARYQELDPSSQICVGGKVGKDACKGDSGGPL------TWMGSFDSAILARNYLIGL 632
CK + + IC G G +C GDSGGPL W L+G+
Sbjct: 166 TNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPLVCKKNGAW------------TLVGI 212
Query: 633 VSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
VS+G + + S PGVY R+T + W+ L
Sbjct: 213 VSWGSSTCSTS-TPGVYARVTALVNWVQQTLA 243
Score = 111 bits (281), Expect = 9e-28
Identities = 55/260 (21%), Positives = 81/260 (31%), Gaps = 77/260 (29%)
Query: 199 PKDKCGLASEQRIIGGYVAKLGSIPWIARIAYSR----------TP-------HCATNPE 241
P + L+ RI+ G A GS PW + HC
Sbjct: 4 PAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTS 63
Query: 242 QISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLER 301
V GE D S +Q +++ KV + ++ + NDI LL+L
Sbjct: 64 D--VVVAGEFDQGSSS----------EKIQKLKIAKVFKNSKYNS-LTINNDITLLKLST 110
Query: 302 PPRLNGTHLMSC-------------CY-----YLAYADNGIS----------IDYN---- 329
+ T C C Y + +
Sbjct: 111 AASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKK 170
Query: 330 -------SGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVY 382
+C G + G SC GDSGGPL + L+G+VS G +S
Sbjct: 171 YWGTKIKDAMICAGAS-GVSSCMGDSGGPLV------CKKNGAWTLVGIVSWG-SSTCST 222
Query: 383 EIPGVYSRTSYFLRWILDHL 402
PGVY+R + + W+ L
Sbjct: 223 STPGVYARVTALVNWVQQTL 242
Score = 84.2 bits (209), Expect = 3e-18
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMG 122
+ L + ++ CK + + IC G G SC GDSGGPL
Sbjct: 145 RYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPLV--- 200
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ L+G+VS+G T PGVY R+T + W+ L
Sbjct: 201 ---CKKNGAWTLVGIVSWG-SSTCSTSTPGVYARVTALVNWVQQTLA 243
Score = 83.8 bits (208), Expect = 3e-18
Identities = 41/168 (24%), Positives = 55/168 (32%), Gaps = 46/168 (27%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLT--EKKIPSHILLGVNQLVYDRYLCTAIYE 730
V VCLP +F G + GWGLT L + + C +
Sbjct: 117 TVSAVCLPSAS---DDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWG 173
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ D +C G G SC GDSGGPL+
Sbjct: 174 TK-------------IKDAMICA--------------------GASGVSSCMGDSGGPLV 200
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ L+GIVS G S+ PGVY R + + W+ T
Sbjct: 201 ------CKKNGAWTLVGIVSWG-SSTCSTSTPGVYARVTALVNWVQQT 241
Score = 36.0 bits (84), Expect = 0.035
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 405 HFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY--TGTKNDIALLRLEKS 462
V GE + + +Q +K+ + + Y NDI LL+L +
Sbjct: 64 DVVVAGEFDQGSSS------------EKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTA 111
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 143 bits (363), Expect = 6e-39
Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 38/202 (18%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG + + E + I ++ Y ND+ LL+L++
Sbjct: 53 VVLGAYD---------LRRRE---RQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREAN 100
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARY 585
V + LP NA VAGWG GR S V V ++C+
Sbjct: 101 LTSSVTILPLPLQNATVEA--GTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR--- 155
Query: 586 QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TCGTKS 643
+ +C G C GD G PL + G+ S+ CG
Sbjct: 156 -----PNNVCTGVLTRRGGICNGDGGTPL----------VCEGLAHGVASFSLGPCGRG- 199
Query: 644 ENPGVYTRMTYFLQWILDHLED 665
P +TR+ F WI L +
Sbjct: 200 --PDFFTRVALFRDWIDGVLNN 219
Score = 113 bits (285), Expect = 1e-28
Identities = 43/249 (17%), Positives = 70/249 (28%), Gaps = 83/249 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC------------------ATNPEQISSVRLGEHD 252
I+GG A+ P++A I C + NP + V LG +D
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVST-VVLGAYD 59
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMS 312
R+ + + +S + + ND+ LL+L+R L + +
Sbjct: 60 ----------LRRRERQSRQTFSISSMSENGYDPQ-QNLNDLMLLQLDREANLTSSVTIL 108
Query: 313 CCYYLAYADNGIS------------------------------IDY---NSGQMCVGG-N 338
L + + +C G
Sbjct: 109 P---LPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLT 165
Query: 339 VGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLR 396
CNGD G PL G+ S CG P ++R + F
Sbjct: 166 RRGGICNGDGGTPLVCEG------------LAHGVASFSLGPCGRG--PDFFTRVALFRD 211
Query: 397 WILDHLDDH 405
WI L++
Sbjct: 212 WIDGVLNNP 220
Score = 85.7 bits (213), Expect = 6e-19
Identities = 34/167 (20%), Positives = 42/167 (25%), Gaps = 62/167 (37%)
Query: 674 YVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
V + LP ++ G VAGWG S VN V C
Sbjct: 104 SVTILPLPLQNATVE---AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC------ 154
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
+C G CNGD G PL+
Sbjct: 155 ----------------------------------RPNNVCTGVLTRRGGICNGDGGTPLV 180
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G+ S CG R P +TR + F WI
Sbjct: 181 CEG------------LAHGVASFSLGPCG--RGPDFFTRVALFRDWI 213
Score = 84.5 bits (210), Expect = 1e-18
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 21/108 (19%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMG 122
R S V V ++C+ + +C G C GD G PL
Sbjct: 132 RSGGRLSRFPRFVNVTVTPEDQCR--------PNNVCTGVLTRRGGICNGDGGTPLV--- 180
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
G+ S+ CG+ P +TR+ F WI L +
Sbjct: 181 -------CEGLAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLNN 219
Score = 37.9 bits (89), Expect = 0.007
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
V LG + + + + I ++ Y + ND+ LL+L++
Sbjct: 53 VVLGAYD-LRRRE-----------RQSRQTFSISSMSENGYDPQQNLNDLMLLQLDRE 98
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 143 bits (363), Expect = 6e-39
Identities = 60/206 (29%), Positives = 85/206 (41%), Gaps = 31/206 (15%)
Query: 462 SPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRL 521
VRLGE N+ + G E Q I + + H NY+ NDI L++L
Sbjct: 43 KSRVEVRLGEHNI------KVTEGSE------QFISSSRVIRHPNYSSYNIDNDIMLIKL 90
Query: 522 EKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVT-EDGRSSLELLAVQQKVFNSE 579
K N YV PV LP T V+GWG T S +L + + +
Sbjct: 91 SKPATLNTYVQPVALP-----TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYS 145
Query: 580 ECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT 638
+C Y + ++ C G G KD+C+GDSGGP+ L G+VS+G
Sbjct: 146 DCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV----------CNGELQGVVSWGYG 195
Query: 639 CGTKSENPGVYTRMTYFLQWILDHLE 664
C PGVY ++ F W+ +
Sbjct: 196 CAEPGN-PGVYAKVCIFNDWLTSTMA 220
Score = 84.1 bits (209), Expect = 2e-18
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMG 122
S +L + + + C Y + ++ C G G KDSC GDSGGP+
Sbjct: 125 MSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVV--- 181
Query: 123 SFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L G+VS+G C + NPGVY ++ F W+ +
Sbjct: 182 -------CNGELQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLTSTMA 220
Score = 77.5 bits (192), Expect = 4e-16
Identities = 45/164 (27%), Positives = 57/164 (34%), Gaps = 49/164 (29%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLT-EKKIPSHILLGVNQLVYDRYLCTAIYER 731
YVQPV LP G V+GWG T S+ L +N + C Y
Sbjct: 99 YVQPVALP-----TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG 153
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
++ + C E G GKDSC GDSGGP++
Sbjct: 154 -------------MITNAMFCAGYLE--G----------------GKDSCQGDSGGPVVC 182
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G L G+VS G C PGVY + F W+
Sbjct: 183 NG----------ELQGVVSWG-YGCAEPGNPGVYAKVCIFNDWL 215
Score = 74.5 bits (184), Expect = 3e-15
Identities = 54/246 (21%), Positives = 79/246 (32%), Gaps = 75/246 (30%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR--------TP-------HCATNPEQISSVRLGEHDANS 255
I+GGY K S P + HC ++ VRLGEH+
Sbjct: 1 IVGGYECKAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHC--YKSRVE-VRLGEHNIKV 57
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCY 315
Q I +VI H ++S N+ NDI L++L +P LN T++
Sbjct: 58 T----------EGSEQFISSSRVIRHPNYSSY-NIDNDIMLIKLSKPATLN-TYVQPVA- 104
Query: 316 YLAYADNGISIDYNSGQMCV---------GGN------------VGKDSCNGDSGGPLT- 353
L + +G MC + CN G +T
Sbjct: 105 -LP------TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITN 157
Query: 354 -------WMGSFDSA-------ISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWIL 399
G DS + L G+VS G C PGVY++ F W+
Sbjct: 158 AMFCAGYLEGGKDSCQGDSGGPVVCNGELQGVVSWG-YGCAEPGNPGVYAKVCIFNDWLT 216
Query: 400 DHLDDH 405
+ +
Sbjct: 217 STMASY 222
Score = 38.6 bits (91), Expect = 0.005
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
VRLGE N+ KV Q I + + H NY+ NDI L++L K
Sbjct: 48 VRLGEHNI------------KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKP 93
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 143 bits (363), Expect = 8e-39
Identities = 54/211 (25%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK---NDIALLR 520
+ V G Q+ Q V + HENY +GT NDIA+L
Sbjct: 53 NIRVIAGLWQ-------QSDT------SGTQTANVDSYTMHENY-GAGTASYSNDIAILH 98
Query: 521 LEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSE 579
L S G + LP ++ +++GWG T L V +
Sbjct: 99 LATSISLGGNIQAAVLP--ANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTA 156
Query: 580 ECKARYQELDPS----SQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVS 634
+C A + + + ICV G AC GDSGGPL ++G+ S
Sbjct: 157 QCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDG-------GTRVVGVTS 209
Query: 635 YGPTCGT---KSENPGVYTRMTYFLQWILDH 662
+ + G + P VYTR++ +L WI D+
Sbjct: 210 WVVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240
Score = 110 bits (277), Expect = 2e-27
Identities = 53/263 (20%), Positives = 73/263 (27%), Gaps = 95/263 (36%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HC--ATNPEQISSVRLG 249
+IGG A G PW HC P I V G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIR-VIAG 59
Query: 250 EHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHF-SGEPNMRNDIALLRLERPPRLNGT 308
+ Q V HE++ +G + NDIA+L L L G
Sbjct: 60 LWQ-----------QSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGN 108
Query: 309 HLMSC-------------CY---------------------------------YLAYADN 322
+ C +
Sbjct: 109 IQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGA 168
Query: 323 GISIDYNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS--- 378
I +CV G +CNGDSGGPL T ++G+ S +S
Sbjct: 169 NIW----DNHICVQDPAGNTGACNGDSGGPLNC-------PDGGTRVVGVTSWVVSSGLG 217
Query: 379 CGVYEIPGVYSRTSYFLRWILDH 401
+ + P VY+R S +L WI D+
Sbjct: 218 ACLPDYPSVYTRVSAYLGWIGDN 240
Score = 94.2 bits (235), Expect = 8e-22
Identities = 41/167 (24%), Positives = 58/167 (34%), Gaps = 42/167 (25%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYERN 732
+Q LP + Y G +++GWG T+ IL + V CTA
Sbjct: 108 NIQAAVLPANNNNDYA--GTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGV 165
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLMW 791
G + + +CV G +CNGDSGGPL
Sbjct: 166 GGANIWD----------------------------NHICVQDPAGNTGACNGDSGGPLN- 196
Query: 792 MGSFDRSISARTYLLGIVSLGPST---CGMLRIPGVYTRTSYFLRWI 835
T ++G+ S S+ + P VYTR S +L WI
Sbjct: 197 ------CPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237
Score = 83.5 bits (207), Expect = 4e-18
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPS----SQICVGGKVG-KDSCYGDSGGPLTWMGSFDSA 127
L V + +C A + + + ICV G +C GDSGGPL
Sbjct: 145 LQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNC------- 197
Query: 128 ISARNYLIGLVSYGP---EDCGKTENPGVYTRMTYFLQWILDH 167
++G+ S+ + P VYTR++ +L WI D+
Sbjct: 198 PDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240
Score = 36.8 bits (86), Expect = 0.019
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 25/79 (31%)
Query: 396 RWIL--------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY 447
L ++ V G Q+ Q V + HENY
Sbjct: 37 TSALSASHCVDGVLPNNIRVIAGLWQ-------QSDT------SGTQTANVDSYTMHENY 83
Query: 448 ----TGTKNDIALLRLEKS 462
NDIA+L L S
Sbjct: 84 GAGTASYSNDIAILHLATS 102
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 143 bits (364), Expect = 8e-39
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 29/216 (13%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-NDIALLRLE 522
D +VR+G+ + +E + + + H Y DIAL++L+
Sbjct: 58 DLLVRIGKHS---------RTRYE--RNIEKISMLEKIYIHPRYNWRENLDRDIALMKLK 106
Query: 523 KSPEWNGYVHPVCLPYGNAMTRNF-ENENTIVAGWGVTED-------GRSSLELLAVQQK 574
K ++ Y+HPVCLP V GWG ++ L V
Sbjct: 107 KPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLP 166
Query: 575 VFNSEECKARYQELDPSSQICVGGKV----GKDACKGDSGGPLTWMGSFDSAILARNYLI 630
+ CK + + C G K DAC+GDSGGP F++ R Y +
Sbjct: 167 IVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN----RWYQM 222
Query: 631 GLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
G+VS+G C G YT + +WI ++
Sbjct: 223 GIVSWGEGCDRD-GKYGFYTHVFRLKKWIQKVIDQF 257
Score = 90.8 bits (226), Expect = 2e-20
Identities = 44/173 (25%), Positives = 58/173 (33%), Gaps = 41/173 (23%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKKI-------PSHILLGVNQLVYDRYLC 725
Y+ PVCLP + G V GWG ++ +L VN + +R +C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC 173
Query: 726 TAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDS 785
+ D C A G GK D+C GDS
Sbjct: 174 KDSTRIR-------------ITDNMFC-A-------------GYKPDEGK-RGDACEGDS 205
Query: 786 GGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 206 GGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKV 253
Score = 86.6 bits (215), Expect = 5e-19
Identities = 41/272 (15%), Positives = 73/272 (26%), Gaps = 92/272 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP------------------HC--------ATNPEQIS 244
I+ G A++G PW + HC +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 245 SVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPR 304
VR+G+H + + K+ H ++ N+ DIAL++L++P
Sbjct: 61 -VRIGKHSRTRYER---------NIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVA 110
Query: 305 LNGTHLMSCCYYLAYADNGISIDYNSGQMCV---------------GGN----------- 338
+ ++ C L + +G G
Sbjct: 111 FS-DYIHPVC--LP-DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLP 166
Query: 339 -VGKDSCNGDSGGPLT-----------WMGSFDS-------------AISARTYLIGLVS 373
V + C + +T D+ + R Y +G+VS
Sbjct: 167 IVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVS 226
Query: 374 LGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
G C G Y+ +WI +D
Sbjct: 227 WG-EGCDRDGKYGFYTHVFRLKKWIQKVIDQF 257
Score = 84.3 bits (209), Expect = 3e-18
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 76 VQQKVFNSEKCKARYQKLDPSSQICVGGKV----GKDSCYGDSGGPLTWMGSFDSAISAR 131
V + CK + + C G K D+C GDSGGP F++ R
Sbjct: 163 VNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN----R 218
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
Y +G+VS+G E C + G YT + +WI ++
Sbjct: 219 WYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVIDQF 257
Score = 37.3 bits (87), Expect = 0.013
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 404 DHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK---NDIALLRLE 460
D VR+G+ + T + + + + H Y + DIAL++L+
Sbjct: 58 DLLVRIGKHS-RTRYE----------RNIEKISMLEKIYIHPRYNWRENLDRDIALMKLK 106
Query: 461 K 461
K
Sbjct: 107 K 107
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 143 bits (362), Expect = 9e-39
Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLR 520
V LG + ++ E P + V++ + H + +D+ LL+
Sbjct: 47 ADGKVQVLLGAHS---------LSQPE---PSKRLYDVLRAVPHPDSQPDTIDHDLLLLQ 94
Query: 521 LEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSE 579
L + V P+ + VAGWG+ GR L V V +
Sbjct: 95 LSEKATLGPAVRPLPWQRVDRDVAP--GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRA 152
Query: 580 ECKARYQELD--PSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP 637
C R +C +D+CKGD+GGPL + L G+V+ G
Sbjct: 153 TCNRRTHHDGAITERLMCAESN-RRDSCKGDAGGPL----------VCGGVLEGVVTSGS 201
Query: 638 -TCGTKSENPGVYTRMTYFLQWI 659
CG + PG+YTR+ + WI
Sbjct: 202 RVCGNRK-KPGIYTRVASYAAWI 223
Score = 114 bits (287), Expect = 8e-29
Identities = 47/252 (18%), Positives = 78/252 (30%), Gaps = 93/252 (36%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC------------------ATNPEQISSVRLGEHD 252
I+GG A+ + P++A + + C ++ V LG H
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQ-VLLGAHS 59
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
+ P + V++ + H + + +D+ LL+L L
Sbjct: 60 LSQP----------EPSKRLYDVLRAVPHPDSQPD-TIDHDLLLLQLSEKATLGPAVRPL 108
Query: 307 -----GTHL---MSC------------------------------CYYLAYADNGISIDY 328
+ C C + D I+
Sbjct: 109 PWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAIT--- 165
Query: 329 NSGQMCVGGNVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPG 386
MC N +DSC GD+GGPL L G+V+ G CG + PG
Sbjct: 166 -ERLMCAESN-RRDSCKGDAGGPLVCGG------------VLEGVVTSGSRVCGNRKKPG 211
Query: 387 VYSRTSYFLRWI 398
+Y+R + + WI
Sbjct: 212 IYTRVASYAAWI 223
Score = 91.8 bits (229), Expect = 4e-21
Identities = 43/166 (25%), Positives = 58/166 (34%), Gaps = 50/166 (30%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
V+P+ D + G VAGWG+ L V V DR C
Sbjct: 104 AVRPLPWQRVD---RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH 160
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM- 790
+G AI ER +C +DSC GD+GGPL+
Sbjct: 161 DG--------------------AITER----------LMCAESN-RRDSCKGDAGGPLVC 189
Query: 791 -WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L G+V+ G CG + PG+YTR + + WI
Sbjct: 190 GG------------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 84.9 bits (211), Expect = 1e-18
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLD--PSSQICVGGKVGKDSCYGDSGGPLTWM 121
R L V V + C R +C +DSC GD+GGPL
Sbjct: 132 NHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESN-RRDSCKGDAGGPLV-- 188
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G+V+ G CG + PG+YTR+ + WI
Sbjct: 189 --------CGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 38.3 bits (90), Expect = 0.006
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY--TGTKNDIALLRLEKS 462
V LG + ++ P+ P + V++ + H + +D+ LL+L +
Sbjct: 53 VLLGAHS-LSQPE-----------PSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEK 98
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 142 bits (361), Expect = 1e-38
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 31/202 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
VRLG ++ + Q + ++ + H Y+ G ND+ L++L +
Sbjct: 50 VRLGHYSLSPVYE-----------SGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIR 98
Query: 527 WNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKA 583
V P+ + + +V+GWG T+ + L + V + + C+
Sbjct: 99 PTKDVRPINVS-----SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCED 153
Query: 584 RYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-CGTK 642
Y + C G K G+D+C+GDSGGP+ + L GLVS+G C
Sbjct: 154 AYPRQIDDTMFCAGDKAGRDSCQGDSGGPV----------VCNGSLQGLVSWGDYPCARP 203
Query: 643 SENPGVYTRMTYFLQWILDHLE 664
+ PGVYT + F +WI + ++
Sbjct: 204 NR-PGVYTNLCKFTKWIQETIQ 224
Score = 101 bits (253), Expect = 3e-24
Identities = 51/246 (20%), Positives = 72/246 (29%), Gaps = 77/246 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HCATNPEQISSVRLGEHDA 253
II G + + PW A + HC VRLG +
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKV---FRVRLGHYSL 57
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLE---------RPPR 304
+ + Q + VK I H +S ND+ L++L RP
Sbjct: 58 SPVYE---------SGQQMFQGVKSIPHPGYSHP-GHSNDLMLIKLNRRIRPTKDVRPIN 107
Query: 305 L--NGTHLMSCCY-----YLAYADNGIS----------IDYN-----------SGQMCVG 336
+ + + C + C G
Sbjct: 108 VSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAG 167
Query: 337 GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLR 396
G+DSC GDSGGP+ L GLVS G C PGVY+ F +
Sbjct: 168 DKAGRDSCQGDSGGPVV----------CNGSLQGLVSWGDYPCARPNRPGVYTNLCKFTK 217
Query: 397 WILDHL 402
WI + +
Sbjct: 218 WIQETI 223
Score = 91.5 bits (228), Expect = 7e-21
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 79 KVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLV 138
V + ++C+ Y + + C G K G+DSC GDSGGP+ L GLV
Sbjct: 144 SVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQGDSGGPVV----------CNGSLQGLV 193
Query: 139 SYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
S+G C + PGVYT + F +WI + ++
Sbjct: 194 SWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
Score = 88.8 bits (221), Expect = 6e-20
Identities = 43/168 (25%), Positives = 60/168 (35%), Gaps = 50/168 (29%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYE 730
V+P+ + + G +V+GWG T+ + +L +N V + C Y
Sbjct: 102 DVRPINVS-----SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYP 156
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
R I + C G K G+DSC GDSGGP++
Sbjct: 157 RQ----------------------IDDT----------MFCAGDKAGRDSCQGDSGGPVV 184
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
L G+VS G C PGVYT F +WI T
Sbjct: 185 ----------CNGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQET 222
Score = 37.9 bits (89), Expect = 0.007
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
VRLG ++ + Q + ++ + H Y+ ND+ L++L +
Sbjct: 50 VRLGHYSLSPVYE-----------SGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRR 96
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 144 bits (365), Expect = 1e-38
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 29/216 (13%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-NDIALLRLE 522
D +VR+G+ + +E + + + H Y DIAL++L+
Sbjct: 88 DLLVRIGKHS---------RTRYE--RNIEKISMLEKIYIHPRYNWRENLDRDIALMKLK 136
Query: 523 KSPEWNGYVHPVCLPYGNAMTRNF-ENENTIVAGWGVTED-------GRSSLELLAVQQK 574
K ++ Y+HPVCLP V GWG ++ L V
Sbjct: 137 KPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLP 196
Query: 575 VFNSEECKARYQELDPSSQICVGGKV----GKDACKGDSGGPLTWMGSFDSAILARNYLI 630
+ CK + + C G K DAC+GDSGGP F++ R Y +
Sbjct: 197 IVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN----RWYQM 252
Query: 631 GLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
G+VS+G C G YT + +WI ++
Sbjct: 253 GIVSWGEGCDRD-GKYGFYTHVFRLKKWIQKVIDQF 287
Score = 91.3 bits (227), Expect = 2e-20
Identities = 44/296 (14%), Positives = 79/296 (26%), Gaps = 93/296 (31%)
Query: 188 PEQHKNWHLLPPKDKCGLASEQ-RIIGGYVAKLGSIPWIARIAYSRTP------------ 234
P K + + + RI+ G A++G PW +
Sbjct: 7 PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 66
Query: 235 ------HC--------ATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVIS 280
HC + VR+G+H + + K+
Sbjct: 67 WVLTAAHCLLYPPWDKNFTENDLL-VRIGKHSRTRYER---------NIEKISMLEKIYI 116
Query: 281 HEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCV----- 335
H ++ N+ DIAL++L++P + ++ C L + +G
Sbjct: 117 HPRYNWRENLDRDIALMKLKKPVAFS-DYIHPVC--LP-DRETAASLLQAGYKGRVTGWG 172
Query: 336 ----------GGN------------VGKDSCNGDSGGPLT-----------WMGSFDS-- 360
G V + C + +T D+
Sbjct: 173 NLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACE 232
Query: 361 -----------AISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
+ R Y +G+VS G C G Y+ +WI +D
Sbjct: 233 GDSGGPFVMKSPFNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVIDQF 287
Score = 90.9 bits (226), Expect = 3e-20
Identities = 43/173 (24%), Positives = 59/173 (34%), Gaps = 41/173 (23%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKKI-------PSHILLGVNQLVYDRYLC 725
Y+ PVCLP + G V GWG ++ +L VN + +R +C
Sbjct: 144 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC 203
Query: 726 TAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDS 785
+ D C A Y+ + G D+C GDS
Sbjct: 204 KDSTRIR-------------ITDNMFC-AGYKPDE------------GK--RGDACEGDS 235
Query: 786 GGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 236 GGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKV 283
Score = 84.0 bits (208), Expect = 6e-18
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKV----GKDSCYGDSGGPLTWMGS 123
L V + CK + + C G K D+C GDSGGP
Sbjct: 185 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP 244
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
F++ R Y +G+VS+G E C + G YT + +WI ++
Sbjct: 245 FNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVIDQF 287
Score = 37.4 bits (87), Expect = 0.015
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 403 DDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK---NDIALLRL 459
+D VR+G+ + T + + + + H Y + DIAL++L
Sbjct: 87 NDLLVRIGKHS-RTRYE----------RNIEKISMLEKIYIHPRYNWRENLDRDIALMKL 135
Query: 460 EK 461
+K
Sbjct: 136 KK 137
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 141 bits (359), Expect = 2e-38
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 32/210 (15%)
Query: 459 LEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIAL 518
L ++ VR+G++N + G E +V + H +T DIA+
Sbjct: 44 LYQAKRFKVRVGDRNT------EQEEGGE------AVHEVEVVIKHNRFTKETYDFDIAV 91
Query: 519 LRLEKSPEWNGYVHPVCLPYGNAMTRNF-ENENTIVAGWGVTEDGRSSL--ELLAVQQKV 575
LRL+ + V P LP T +++GWG T + EL + V
Sbjct: 92 LRLKTPITFRMNVAPASLP-----TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPV 146
Query: 576 FNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVS 634
+ +C+A Y S+ CVG G KD+C+GDSGGP+ L G+VS
Sbjct: 147 LSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVV----------CNGQLQGVVS 196
Query: 635 YGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+G C K PGVYT++ +++WI + +
Sbjct: 197 WGDGCAQK-NKPGVYTKVYNYVKWIKNTIA 225
Score = 100 bits (252), Expect = 4e-24
Identities = 60/253 (23%), Positives = 83/253 (32%), Gaps = 90/253 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-----------------HCATNPEQISSVRLGEHDA 253
I+GGY K G +PW A + HC ++ VR+G+ +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFK-VRVGDRNT 59
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------- 306
+ V VI H F+ E DIA+LRL+ P
Sbjct: 60 EQE----------EGGEAVHEVEVVIKHNRFTKE-TYDFDIAVLRLKTPITFRMNVAPAS 108
Query: 307 --------GTHLMSCCY-----YLAYADNGIS----------IDYN-----------SGQ 332
GT C A + + S
Sbjct: 109 LPTAPPATGTK----CLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNM 164
Query: 333 MCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
CVG G GKDSC GDSGGP+ G L G+VS G C PGVY+
Sbjct: 165 FCVGFLEG--GKDSCQGDSGGPVVCNG----------QLQGVVSWG-DGCAQKNKPGVYT 211
Query: 390 RTSYFLRWILDHL 402
+ +++WI + +
Sbjct: 212 KVYNYVKWIKNTI 224
Score = 81.0 bits (201), Expect = 2e-17
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISAR 131
L + V + KC+A Y S+ CVG G KDSC GDSGGP+
Sbjct: 139 LQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPV----------VCN 188
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L G+VS+G + C + PGVYT++ +++WI + +
Sbjct: 189 GQLQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTIA 225
Score = 76.4 bits (189), Expect = 8e-16
Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 48/164 (29%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYER 731
V P LP G +++GWG T L ++ V + C A Y
Sbjct: 103 NVAPASLPTAP----PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG 158
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+ C + +G GKDSC GDSGGP++
Sbjct: 159 K-------------ITSNMFC-VGFL---------EG--------GKDSCQGDSGGPVVC 187
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
G L G+VS G C PGVYT+ +++WI
Sbjct: 188 NG----------QLQGVVSWG-DGCAQKNKPGVYTKVYNYVKWI 220
Score = 39.0 bits (92), Expect = 0.003
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
+IL VR+G++N + +V + H +T
Sbjct: 35 FYILTAAHCLYQAKRFKVRVGDRN-TEQEE-----------GGEAVHEVEVVIKHNRFTK 82
Query: 450 TK--NDIALLRLEK 461
DIA+LRL+
Sbjct: 83 ETYDFDIAVLRLKT 96
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 143 bits (363), Expect = 3e-38
Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 22/204 (10%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
+ G + ++ PP+Q+ V + + HE Y+ S NDIAL+++
Sbjct: 60 LIFGAKE-------VEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVT 112
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTI--VAGWGVTEDG--RSSLELLAVQQKVFNSEECK 582
++ P CLP A VAGWG ++ R+S L + + + C
Sbjct: 113 CGHFIGPGCLPQFRA---GPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCN 169
Query: 583 ARYQELD--PSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTC 639
+ S+ +C G G D C+GDSGGPL S ++ ++G+ S+G C
Sbjct: 170 STRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAEN----SYVVVGITSWGVGC 225
Query: 640 GTKSENPGVYTRMTYFLQWILDHL 663
+ PGVYT +L WI +
Sbjct: 226 ARA-KRPGVYTSTWSYLNWIASKI 248
Score = 108 bits (273), Expect = 2e-26
Identities = 57/260 (21%), Positives = 86/260 (33%), Gaps = 80/260 (30%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP----------------------HC---ATNPEQISS 245
IIGG A G+ PW+ + HC
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWR- 59
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
+ G + ++ PP+Q+ V K+I HE +S + NDIAL+++ P
Sbjct: 60 LIFGAKEVEW-----GTNKPVKPPLQERYVEKIIIHEKYS-ASSEANDIALMKITPPVTC 113
Query: 306 NGT--------------HLMSCCY-----YLAYADNGIS----------IDYN------- 329
+ C+ +L S ID
Sbjct: 114 GHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRW 173
Query: 330 ------SGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVY 382
S +C G G D+C GDSGGPL S ++ ++G+ S G C
Sbjct: 174 YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAEN----SYVVVGITSWG-VGCARA 228
Query: 383 EIPGVYSRTSYFLRWILDHL 402
+ PGVY+ T +L WI +
Sbjct: 229 KRPGVYTSTWSYLNWIASKI 248
Score = 93.6 bits (233), Expect = 4e-21
Identities = 45/167 (26%), Positives = 63/167 (37%), Gaps = 37/167 (22%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKK--IPSHILLGVNQLVYDRYLCTAIYER 731
++ P CLP + VAGWG ++ S +L + D LC +
Sbjct: 116 FIGPGCLP-QFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWY 174
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
NG + +C A Y +G D+C GDSGGPLM
Sbjct: 175 NGR-----------IRSTNVC-AGYP---------EG--------KIDTCQGDSGGPLMC 205
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
S + ++GI S G C + PGVYT T +L WI +
Sbjct: 206 KDSAEN----SYVVVGITSWGVG-CARAKRPGVYTSTWSYLNWIASK 247
Score = 83.2 bits (206), Expect = 1e-17
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLD--PSSQICVGGKVG-KDSCYGDSGGPLT 119
+R S L + + + C + S+ +C G G D+C GDSGGPL
Sbjct: 145 QENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLM 204
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
S ++ ++G+ S+G C + + PGVYT +L WI +
Sbjct: 205 CKDSAEN----SYVVVGITSWG-VGCARAKRPGVYTSTWSYLNWIASKI 248
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYT--GTKNDIALLRLEKS 462
+ G + +K PP+Q+ V + + HE Y+ NDIAL+++
Sbjct: 60 LIFGAKE-------VEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPP 110
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 141 bits (359), Expect = 3e-38
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 34/207 (16%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG + ++ +E Q +++ +F+ T NDI L++L+ + +
Sbjct: 56 VVLGAHS---------LSKNE---ASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAK 103
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG--RSSLELLAVQQKVFNSEECKAR 584
N +V + + ++ V GWG T+ R S L V V + + C ++
Sbjct: 104 LNKHVKMLHIRSKTSLR---SGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ 160
Query: 585 Y----QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTC 639
+C G K KD+CKGD+GGPL + +VS G C
Sbjct: 161 SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLI----------CKGVFHAIVSGGHEC 210
Query: 640 GTKSENPGVYTRMT-YFLQWILDHLED 665
G + PG+YT +T + WI +L
Sbjct: 211 GVAT-KPGIYTLLTKKYQTWIKSNLVP 236
Score = 110 bits (277), Expect = 3e-27
Identities = 58/259 (22%), Positives = 80/259 (30%), Gaps = 92/259 (35%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTP----------------HCATNPEQISS--VRLGEH 251
IIGG S P++A I Y HC + S V LG H
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----- 306
+ + Q + + K I + + NDI L++L+ +LN
Sbjct: 62 SLSKNE----------ASKQTLEIKKFIPFSRVTSD-PQSNDIMLVKLQTAAKLNKHVKM 110
Query: 307 -----GTHL---MSC-------------------------------CYYLAYADNGISID 327
T L C C +Y + I
Sbjct: 111 LHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFIT 170
Query: 328 YNSGQMCVGGNVG-KDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
+C G G KDSC GD+GGPL +VS G CGV
Sbjct: 171 --KDMVCAGDAKGQKDSCKGDAGGPLICKG------------VFHAIVSGGH-ECGVATK 215
Query: 385 PGVYSR-TSYFLRWILDHL 402
PG+Y+ T + WI +L
Sbjct: 216 PGIYTLLTKKYQTWIKSNL 234
Score = 92.6 bits (231), Expect = 3e-21
Identities = 45/171 (26%), Positives = 59/171 (34%), Gaps = 50/171 (29%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKK--IPSHILLGVNQLVYDRYLCTAIYER 731
+V+ + + L+ G V GWG T+ PS L V V R LC +
Sbjct: 107 HVKMLHIRSKTSLR---SGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYY 163
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
NG T +C G K KDSC GD+GGPL+
Sbjct: 164 NGDPFITK----------------------------DMVCAGDAKGQKDSCKGDAGGPLI 195
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR-TSYFLRWILAT 838
IVS G CG+ PG+YT T + WI +
Sbjct: 196 CKG------------VFHAIVSGGHE-CGVATKPGIYTLLTKKYQTWIKSN 233
Score = 82.2 bits (204), Expect = 1e-17
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARY----QKLDPSSQICVGG-KVGKDSCYGDSGGP 117
+ RPS L V V + + C ++ +C G K KDSC GD+GGP
Sbjct: 134 DPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGP 193
Query: 118 LTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMT-YFLQWILDHLED 170
L + +VS G +CG PG+YT +T + WI +L
Sbjct: 194 LI----------CKGVFHAIVSGG-HECGVATKPGIYTLLTKKYQTWIKSNLVP 236
Score = 39.1 bits (92), Expect = 0.004
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEK 461
V LG + ++ + Q +++ +F+ T NDI L++L+
Sbjct: 56 VVLGAHS-LSKNE-----------ASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQT 100
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 141 bits (358), Expect = 3e-38
Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 33/208 (15%)
Query: 459 LEKSPDHI-VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-NDI 516
L + + + LG + P + + H Y ND+
Sbjct: 43 LAQRMAQLRLVLGLHTL---------------DSPGLTFHIKAAIQHPRYKPVPALENDL 87
Query: 517 ALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKV 575
ALL+L+ + + + P+ LP + +AGWG+T + GR S L + +V
Sbjct: 88 ALLQLDGKVKPSRTIRPLALPSKRQVVAA--GTRCSMAGWGLTHQGGRLSRVLRELDLQV 145
Query: 576 FNSEECKAR--YQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGL 632
++ C + S +C+ + CKGDSGGPL L G+
Sbjct: 146 LDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVCGKGR--------VLAGV 197
Query: 633 VSYGP-TCGTKSENPGVYTRMTYFLQWI 659
+S+ C P V T + ++ WI
Sbjct: 198 LSFSSRVCTDIF-KPPVATAVAPYVSWI 224
Score = 119 bits (300), Expect = 2e-30
Identities = 42/249 (16%), Positives = 71/249 (28%), Gaps = 86/249 (34%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP----------------HCATNPEQISSVRLGEHDAN 254
IIGG S P++A + + + HC + LG H +
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLHTLD 60
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-------- 306
P + I H + P + ND+ALL+L+ + +
Sbjct: 61 -------------SPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLAL 107
Query: 307 ---GTHL---MSC------------------------------CYYLAYADNGISIDYNS 330
+ C C + + +S
Sbjct: 108 PSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLS----P 163
Query: 331 GQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
+C+ + + C GDSGGPL L G++S C P V +
Sbjct: 164 SMVCLAADSKDQAPCKGDSGGPLVCGKGR--------VLAGVLSFSSRVCTDIFKPPVAT 215
Query: 390 RTSYFLRWI 398
+ ++ WI
Sbjct: 216 AVAPYVSWI 224
Score = 98.4 bits (246), Expect = 3e-23
Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 44/165 (26%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
++P+ LP G +AGWGLT + S +L ++ V D +C
Sbjct: 101 TIRPLALPSKR---QVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFW 157
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM 790
NG + +C+ + C GDSGGPL+
Sbjct: 158 NGSLSPS------------------------------MVCLAADSKDQAPCKGDSGGPLV 187
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L G++S C + P V T + ++ WI
Sbjct: 188 CGKGR--------VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
Score = 88.0 bits (219), Expect = 1e-19
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWM 121
+ R S L + +V ++ C + S +C+ + C GDSGGPL
Sbjct: 130 QGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVCG 189
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
L G++S+ C P V T + ++ WI
Sbjct: 190 KGR--------VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
Score = 37.6 bits (88), Expect = 0.011
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 25/77 (32%)
Query: 396 RWIL-------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYT 448
+W+L + + LG + P + + H Y
Sbjct: 34 KWVLTAAHCLAQRMAQLRLVLGLHTL---------------DSPGLTFHIKAAIQHPRYK 78
Query: 449 GTK---NDIALLRLEKS 462
ND+ALL+L+
Sbjct: 79 PVPALENDLALLQLDGK 95
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 144 bits (365), Expect = 4e-38
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 32/208 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK---NDIALLRLEK 523
V LG NV + + + + H +Y + DIALL LE
Sbjct: 145 VFLGHTNVEELM-------------KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 191
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKA 583
S + P+CLP + T V+G+GV E+ + +L V+ V N + C+
Sbjct: 192 SVTLGPNLLPICLP--DNDTFYDLGLMGYVSGFGVMEEKIAH-DLRFVRLPVANPQACEN 248
Query: 584 RYQELDPSSQI-----CVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP 637
+ + C G +DAC+GDSGG R G+VS+G
Sbjct: 249 WLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD----RWVATGIVSWGI 304
Query: 638 TCGTKSENPGVYTRMTYFLQWILDHLED 665
C G YT++ ++ WI +E+
Sbjct: 305 GCSRG---YGFYTKVLNYVDWIKKEMEE 329
Score = 100 bits (252), Expect = 2e-23
Identities = 51/273 (18%), Positives = 80/273 (29%), Gaps = 91/273 (33%)
Query: 203 CG-----LASEQRIIGGYVAKLGSIPWIARIAYSR-------TP-------HC---ATNP 240
CG + QRIIGG AK+G+ PW H +
Sbjct: 77 CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHE 136
Query: 241 EQISS---VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE--PNMRNDIA 295
Q ++ V LG + + + + +V H + + N DIA
Sbjct: 137 AQSNASLDVFLGHTNVEEL-----------MKLGNHPIRRVSVHPDYRQDESYNFEGDIA 185
Query: 296 LLRLERPPRLNG---------------------------------THLM----------S 312
LL LE L L +
Sbjct: 186 LLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQA 245
Query: 313 CCYYLAYADNGISIDYNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGL 371
C +L + + C G +D+C GDSGG + + R G+
Sbjct: 246 CENWLRGKNRMDVF--SQNMFCAGHPSLKQDACQGDSGGVF----AVRDPNTDRWVATGI 299
Query: 372 VSLGPASCGVYEIPGVYSRTSYFLRWILDHLDD 404
VS G C G Y++ ++ WI +++
Sbjct: 300 VSWGI-GCSRG--YGFYTKVLNYVDWIKKEMEE 329
Score = 91.7 bits (228), Expect = 3e-20
Identities = 41/178 (23%), Positives = 60/178 (33%), Gaps = 40/178 (22%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQLVY 720
LE+ V + + P+CLP D ++ G V+G+G+ E+KI L V V
Sbjct: 188 ELENSVTLGP--NLLPICLPDND---TFYDLGLMGYVSGFGVMEEKIAH-DLRFVRLPVA 241
Query: 721 DRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDS 780
+ C + C A + +D+
Sbjct: 242 NPQACENWLRGKNRMD--------VFSQNMFC-AGHPSL-----------------KQDA 275
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
C GDSGG + R GIVS G C R G YT+ ++ WI
Sbjct: 276 CQGDSGGVFA----VRDPNTDRWVATGIVSWGIG-CS--RGYGFYTKVLNYVDWIKKE 326
Score = 85.2 bits (211), Expect = 4e-18
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQI-----CVGGKVG-KDSCYGDSGG 116
E+K +L V+ V N + C+ + + C G +D+C GDSGG
Sbjct: 224 VMEEKIAH-DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGG 282
Query: 117 PLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
+ + R G+VS+G C + G YT++ ++ WI +E+
Sbjct: 283 VF----AVRDPNTDRWVATGIVSWG-IGCSRG--YGFYTKVLNYVDWIKKEMEE 329
Score = 34.3 bits (79), Expect = 0.13
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK-----NDIALLRLEK 461
V LG NV + + + + H +Y + DIALL LE
Sbjct: 145 VFLGHTNVEELM-------------KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 191
Query: 462 S 462
S
Sbjct: 192 S 192
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 140 bits (356), Expect = 4e-38
Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 32/207 (15%)
Query: 462 SPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRL 521
VRLGE N+ + G+E Q I + + H +Y + NDI L++L
Sbjct: 43 KSGIQVRLGEDNI------NVVEGNE------QFISASKSIVHPSYNSNTLNNDIMLIKL 90
Query: 522 EKSPEWNGYVHPVCLPYGNAMTRNFEN-ENTIVAGWGVTEDGRSSL--ELLAVQQKVFNS 578
+ + N V + LP T +++GWG T+ +S L ++ + +
Sbjct: 91 KSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSD 145
Query: 579 EECKARYQELDPSSQICVGGKV-GKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP 637
CK+ Y S+ C G GKD+C+GDSGGP+ L G+VS+G
Sbjct: 146 SSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVV----------CSGKLQGIVSWGS 195
Query: 638 TCGTKSENPGVYTRMTYFLQWILDHLE 664
C K++ PGVYT++ ++ WI +
Sbjct: 196 GCAQKNK-PGVYTKVCNYVSWIKQTIA 221
Score = 97.6 bits (244), Expect = 5e-23
Identities = 54/245 (22%), Positives = 79/245 (32%), Gaps = 78/245 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR--------TP-------HCATNPEQISSVRLGEHDANS 255
I+GGY ++P+ + HC + Q VRLGE + N
Sbjct: 1 IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQ---VRLGEDNINV 57
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN--------- 306
Q I K I H ++ + NDI L++L+ LN
Sbjct: 58 V----------EGNEQFISASKSIVHPSYNSN-TLNNDIMLIKLKSAASLNSRVASISLP 106
Query: 307 --GTHLMSCCY-----YLAYADNGIS----------IDYN-----------SGQMCVGG- 337
+ C + + + S C G
Sbjct: 107 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 166
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW 397
GKDSC GDSGGP+ G L G+VS G + C PGVY++ ++ W
Sbjct: 167 EGGKDSCQGDSGGPVVCSG----------KLQGIVSWG-SGCAQKNKPGVYTKVCNYVSW 215
Query: 398 ILDHL 402
I +
Sbjct: 216 IKQTI 220
Score = 83.3 bits (207), Expect = 4e-18
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKV-GKDSCYGDSGGPLTWMGSFDSAISAR 131
L ++ + + CK+ Y S+ C G GKDSC GDSGGP+
Sbjct: 135 LKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVV----------CS 184
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L G+VS+G C + PGVYT++ ++ WI +
Sbjct: 185 GKLQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIKQTIA 221
Score = 76.8 bits (190), Expect = 5e-16
Identities = 41/168 (24%), Positives = 56/168 (33%), Gaps = 50/168 (29%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYE 730
V + LP G +++GWG T+ +L + + C + Y
Sbjct: 99 RVASISLP-----TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYP 153
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ C E GKDSC GDSGGP++
Sbjct: 154 GQ-------------ITSNMFCAGYLEG------------------GKDSCQGDSGGPVV 182
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
G L GIVS G S C PGVYT+ ++ WI T
Sbjct: 183 CSG----------KLQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIKQT 219
Score = 39.0 bits (92), Expect = 0.003
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
VRLGE N V Q I + + H +Y NDI L++L+ +
Sbjct: 48 VRLGEDN------------INVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSA 93
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 140 bits (356), Expect = 5e-38
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 35/205 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK---NDIALLRLEK 523
VRLG+ + + D P Q+I+V Q + H Y +S + +DI L+RL+
Sbjct: 49 VRLGDHS-LQSRD-----------QPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQN 96
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVTEDGRSSL--ELLAVQQKVFNSEE 580
S V PV L + I++GWG + + L + K+++ +
Sbjct: 97 SANLGDKVKPVQLA-----NLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNK 151
Query: 581 CKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TC 639
C+ Y +C G G D C+GDSGGPL + L G+ S+G C
Sbjct: 152 CERAYPGKITEGMVCAGSSNGADTCQGDSGGPL----------VCDGMLQGITSWGSDPC 201
Query: 640 GTKSENPGVYTRMTYFLQWILDHLE 664
G + PGVYT++ + WI ++
Sbjct: 202 GKPEK-PGVYTKICRYTTWIKKTMD 225
Score = 96.1 bits (240), Expect = 2e-22
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 76 VQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLI 135
+ K+++ KC+ Y +C G G D+C GDSGGPL L
Sbjct: 142 AEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPLV----------CDGMLQ 191
Query: 136 GLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G+ S+G + CGK E PGVYT++ + WI ++
Sbjct: 192 GITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD 225
Score = 90.7 bits (226), Expect = 1e-20
Identities = 40/167 (23%), Positives = 55/167 (32%), Gaps = 54/167 (32%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYE 730
V+PV L + G+ I++GWG ++ + L +Y + C Y
Sbjct: 103 KVKPVQLA-----NLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAY- 156
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
I +C G G D+C GDSGGPL+
Sbjct: 157 -----------------------------PGKITEG--MVCAGSSNGADTCQGDSGGPLV 185
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L GI S G CG PGVYT+ + WI
Sbjct: 186 CDG------------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWI 220
Score = 89.9 bits (224), Expect = 2e-20
Identities = 53/251 (21%), Positives = 75/251 (29%), Gaps = 84/251 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
I+ G S PW A + C Q SVRLG+H S
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQKYSVRLGDHSLQSR- 59
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFSGEP--NMRND---------------IALLRLE 300
P Q+I+V + I H ++ + +D + ++L
Sbjct: 60 ---------DQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLA 110
Query: 301 RPPRLNGTHLMSCCY-----YLAYADNGIS----------IDYN-----------SGQMC 334
G C + N G +C
Sbjct: 111 NLCPKVGQK----CIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVC 166
Query: 335 VGGNVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
G + G D+C GDSGGPL L G+ S G CG E PGVY++
Sbjct: 167 AGSSNGADTCQGDSGGPLVCDG------------MLQGITSWGSDPCGKPEKPGVYTKIC 214
Query: 393 YFLRWILDHLD 403
+ WI +D
Sbjct: 215 RYTTWIKKTMD 225
Score = 36.0 bits (84), Expect = 0.032
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 17/61 (27%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY-----TGTKNDIALLRLEK 461
VRLG+ + + D P Q+I+V Q + H Y +DI L+RL+
Sbjct: 49 VRLGDHS-LQSRD-----------QPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQN 96
Query: 462 S 462
S
Sbjct: 97 S 97
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 140 bits (356), Expect = 6e-38
Identities = 54/210 (25%), Positives = 82/210 (39%), Gaps = 34/210 (16%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG + I E P Q + V + + Y + + D+ LL+L + +
Sbjct: 50 VILGAHS---------ITREE---PTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAK 97
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARY 585
N YV + LP + VAGWG T S L V+ + + + C R
Sbjct: 98 INKYVTILHLPKKGDDVKP--GTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRN 155
Query: 586 QELDP----SSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-- 638
+ +C G + G+D+C GDSG PL L G+ S+G
Sbjct: 156 HYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL----------LCEGVFRGVTSFGLENK 205
Query: 639 CGTKSENPGVYTRMT-YFLQWILDHLEDEV 667
CG PGVY ++ L WI+ ++ V
Sbjct: 206 CGDPRG-PGVYILLSKKHLNWIIMTIKGAV 234
Score = 107 bits (269), Expect = 3e-26
Identities = 54/253 (21%), Positives = 74/253 (29%), Gaps = 92/253 (36%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP----------------HCATNPEQISSVRLGEHDAN 254
IIGG S P++ ++ R HC N S V LG H
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKR--SQVILGAH--- 55
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-------- 306
+ P Q + V K + + D+ LL+L ++N
Sbjct: 56 -------SITREEPTKQIMLVKKEFPYPCYDPA-TREGDLKLLQLTEKAKINKYVTILHL 107
Query: 307 ---------GT-------------------------HLMS---C-CYYLAYADNGISIDY 328
GT ++ C + I
Sbjct: 108 PKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIG--- 164
Query: 329 NSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS-CGVYEIPG 386
+C G G +DSCNGDSG PL G G+ S G + CG PG
Sbjct: 165 -MNMVCAGSLRGGRDSCNGDSGSPLLCEG----------VFRGVTSFGLENKCGDPRGPG 213
Query: 387 VYSR-TSYFLRWI 398
VY + L WI
Sbjct: 214 VYILLSKKHLNWI 226
Score = 88.0 bits (219), Expect = 1e-19
Identities = 48/168 (28%), Positives = 59/168 (35%), Gaps = 46/168 (27%)
Query: 673 HYVQPVCLP-YGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYE 730
YV + LP GD +K G VAGWG T S L V + DR +C
Sbjct: 100 KYVTILHLPKKGDDVK---PGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNH 156
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPL 789
N + +C G + G+DSCNGDSG PL
Sbjct: 157 YNFNPVIGMN----------------------------MVCAGSLRGGRDSCNGDSGSPL 188
Query: 790 MWMGSFDRSISARTYLLGIVSLGPST-CGMLRIPGVYTR-TSYFLRWI 835
+ G G+ S G CG R PGVY + L WI
Sbjct: 189 LCEG----------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226
Score = 81.8 bits (203), Expect = 1e-17
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 64 TEDKRPSLELLAVQQKVFNSEKCKARYQKLDP----SSQICVGG-KVGKDSCYGDSGGPL 118
S L V+ + + + C R + +C G + G+DSC GDSG PL
Sbjct: 129 HNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL 188
Query: 119 TWMGSFDSAISARNYLIGLVSYGPED-CGKTENPGVYTRMT-YFLQWI 164
G+ S+G E+ CG PGVY ++ L WI
Sbjct: 189 L----------CEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226
Score = 38.3 bits (90), Expect = 0.006
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
V LG + IT + P Q + V + + Y D+ LL+L +
Sbjct: 50 VILGAHS-ITREE-----------PTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEK 95
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 140 bits (355), Expect = 6e-38
Identities = 44/209 (21%), Positives = 73/209 (34%), Gaps = 38/209 (18%)
Query: 461 KSPDHI-VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALL 519
+ I G ++ + ++ + L +T D AL+
Sbjct: 43 GNNTSITATGGV--------------VDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALI 88
Query: 520 RLEKSPEWNGYVH-PVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFN 577
+L + ++ P A T + VAGWG E G LL +
Sbjct: 89 KLAQP------INQPTLKI---ATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVS 139
Query: 578 SEECKARYQELD-PSSQICVG---GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLV 633
C++ + + IC G +D C+GDSGGP+ + D +G+V
Sbjct: 140 DAACRSSSSFILVANEMICAGYDTK--QEDTCQGDSGGPMFRKDNAD-----EWVQVGIV 192
Query: 634 SYGPTCGTKSENPGVYTRMTYFLQWILDH 662
S+G C + GVYT ++ F I
Sbjct: 193 SWGEGCA-RKGKYGVYTEVSTFASAIASA 220
Score = 105 bits (265), Expect = 6e-26
Identities = 46/251 (18%), Positives = 75/251 (29%), Gaps = 91/251 (36%)
Query: 211 IIGGYVAKLGSIPWIARI-----------------AYSRTPHC---ATNPEQISSVRLGE 250
++GG A G P++ R+ A HC + N I+ G
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMGCGGALYAQDIVLTAA-----HCVSGSGNNTSIT-ATGGV 54
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERP-------P 303
D S +R KV+ F+ + D AL++L +P
Sbjct: 55 VDLQS------------SSAVKVRSTKVLQAPGFT-KETYGKDWALIKLAQPINQPTLKI 101
Query: 304 RLNGTHLMSCCY---------------YL---------------AYADNGISIDYNSGQM 333
+ YL + + ++ + +
Sbjct: 102 ATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVA----NEMI 157
Query: 334 CVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR 390
C G +D+C GDSGGP+ + + +G+VS G C GVY+
Sbjct: 158 CAGYDTK--QEDTCQGDSGGPMFRKDN-----ADEWVQVGIVSWG-EGCARKGKYGVYTE 209
Query: 391 TSYFLRWILDH 401
S F I
Sbjct: 210 VSTFASAIASA 220
Score = 85.3 bits (212), Expect = 6e-19
Identities = 35/168 (20%), Positives = 47/168 (27%), Gaps = 46/168 (27%)
Query: 675 VQPVCLPYGDGLKYNFEGKDTIVAGWG-LTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
QP + VAGWG E LL N C +
Sbjct: 95 NQPTLKIATT---TAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFIL 151
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG---GKVGKDSCNGDSGGPLM 790
++ +C G +D+C GDSGGP+
Sbjct: 152 VA-------------------------------NEMICAGYDTK--QEDTCQGDSGGPMF 178
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ + +GIVS G C GVYT S F I +
Sbjct: 179 RKDN-----ADEWVQVGIVSWGEG-CARKGKYGVYTEVSTFASAIASA 220
Score = 84.2 bits (209), Expect = 2e-18
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD-PSSQICVG---GKVGKDSCYGDSGGPLTW 120
E LL + C++ + + IC G +D+C GDSGGP+
Sbjct: 122 EGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTK--QEDTCQGDSGGPMFR 179
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
+ + +G+VS+G E C + GVYT ++ F I
Sbjct: 180 KDN-----ADEWVQVGIVSWG-EGCARKGKYGVYTEVSTFASAIASA 220
Score = 36.8 bits (86), Expect = 0.016
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 426 HKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEK 461
+ + ++ + L +T D AL++L +
Sbjct: 55 VDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQ 92
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 145 bits (367), Expect = 7e-38
Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK---NDIALLRLEK 523
V LG NV + + + + H +Y + DIALL LE
Sbjct: 213 VFLGHTNVEELM-------------KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 259
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKA 583
S + P+CLP + T V+G+GV E+ + +L V+ V N + C+
Sbjct: 260 SVTLGPNLLPICLP--DNDTFYDLGLMGYVSGFGVMEEKIAH-DLRFVRLPVANPQACEN 316
Query: 584 RYQELDPSSQI-----CVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP 637
+ + C G +DAC+GDSGG R G+VS+G
Sbjct: 317 WLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD----RWVATGIVSWGI 372
Query: 638 TCGTKSENPGVYTRMTYFLQWILDHLEDE 666
C G YT++ ++ WI +E+E
Sbjct: 373 GCSRG---YGFYTKVLNYVDWIKKEMEEE 398
Score = 102 bits (256), Expect = 2e-23
Identities = 50/274 (18%), Positives = 78/274 (28%), Gaps = 91/274 (33%)
Query: 203 CG-----LASEQRIIGGYVAKLGSIPWIARIAYSR-------TP-------HCATNPEQI 243
CG + Q+IIGG AK+G+ PW H E
Sbjct: 145 CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPKEHE 204
Query: 244 SS------VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE--PNMRNDIA 295
+ V LG + + + + +V H + + N DIA
Sbjct: 205 AQSNASLDVFLGHTNVEELM-----------KLGNHPIRRVSVHPDYRQDESYNFEGDIA 253
Query: 296 LLRLERPPRLNG---------------------------------THLM----------S 312
LL LE L L +
Sbjct: 254 LLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQA 313
Query: 313 CCYYLAYADNGISIDYNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGL 371
C +L + + C G +D+C GDSGG + + R G+
Sbjct: 314 CENWLRGKNRMDVF--SQNMFCAGHPSLKQDACQGDSGGVF----AVRDPNTDRWVATGI 367
Query: 372 VSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
VS G C G Y++ ++ WI +++
Sbjct: 368 VSWGI-GCS--RGYGFYTKVLNYVDWIKKEMEEE 398
Score = 92.2 bits (229), Expect = 5e-20
Identities = 41/177 (23%), Positives = 60/177 (33%), Gaps = 38/177 (21%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYD 721
LE+ V + + P+CLP D + G V+G+G+ E+KI L V V +
Sbjct: 256 ELENSVTLGP--NLLPICLPDND--TFYDLGLMGYVSGFGVMEEKIAH-DLRFVRLPVAN 310
Query: 722 RYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSC 781
C ++ C A + +D+C
Sbjct: 311 PQACENWLRGKNRMDVFSQNMFC---------AGHPSL-----------------KQDAC 344
Query: 782 NGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GDSGG + R GIVS G C R G YT+ ++ WI
Sbjct: 345 QGDSGGVFA----VRDPNTDRWVATGIVSWGIG-CS--RGYGFYTKVLNYVDWIKKE 394
Score = 86.8 bits (215), Expect = 4e-18
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQI-----CVGGKVG-KDSCYGDSGG 116
E+K +L V+ V N + C+ + + C G +D+C GDSGG
Sbjct: 292 VMEEKIAH-DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGG 350
Query: 117 PLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
+ + R G+VS+G C + G YT++ ++ WI +E+E
Sbjct: 351 VF----AVRDPNTDRWVATGIVSWG-IGCSRG--YGFYTKVLNYVDWIKKEMEEE 398
Score = 34.4 bits (79), Expect = 0.16
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK-----NDIALLRLEK 461
V LG NV + + + + H +Y + DIALL LE
Sbjct: 213 VFLGHTNVEELM-------------KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELEN 259
Query: 462 S 462
S
Sbjct: 260 S 260
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 140 bits (355), Expect = 8e-38
Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 38/208 (18%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
+ V LG QN E P +Q + V + + + + + LL+LE+
Sbjct: 50 GYEVWLGTLF-------QNPQHGE---PSLQRVPVAKMVCGPSG------SQLVLLKLER 93
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKA 583
S N V +CLP + +AGWG T+ + L V +++EC
Sbjct: 94 SVTLNQRVALICLPPEWYVVPP--GTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNI 151
Query: 584 RYQELDPSSQICVGGKVG-KDACKGDSGGPL------TWMGSFDSAILARNYLIGLVSYG 636
+++ S++C G + AC+GD GGPL +W L G++
Sbjct: 152 KHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSW------------VLEGIIIPN 199
Query: 637 PTCGTKSENPGVYTRMTYFLQWILDHLE 664
C P V+TR++ F+ WI +
Sbjct: 200 RVCARSR-WPAVFTRVSVFVDWIHKVMR 226
Score = 88.4 bits (220), Expect = 8e-20
Identities = 38/169 (22%), Positives = 53/169 (31%), Gaps = 48/169 (28%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
V +CLP Y G +AGWG T+ +L V C + R
Sbjct: 100 RVALICLPPEW---YVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKH-RG 155
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM- 790
+ + ++C G + +C GD GGPL
Sbjct: 156 RVR-------------------------------ESEMCTEGLLAPVGACEGDYGGPLAC 184
Query: 791 -WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
S+ L GI+ C R P V+TR S F+ WI
Sbjct: 185 FTHNSW--------VLEGIIIPNRV-CARSRWPAVFTRVSVFVDWIHKV 224
Score = 87.3 bits (217), Expect = 2e-19
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPL--- 118
T+ L V ++++C +++ S++C G + +C GD GGPL
Sbjct: 126 ETKGTGNDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACF 185
Query: 119 ---TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+W L G++ C ++ P V+TR++ F+ WI +
Sbjct: 186 THNSW------------VLEGIIIPN-RVCARSRWPAVFTRVSVFVDWIHKVMR 226
Score = 86.5 bits (215), Expect = 4e-19
Identities = 41/217 (18%), Positives = 62/217 (28%), Gaps = 79/217 (36%)
Query: 235 HCATNPEQISS---VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMR 291
C ++ + V LG N P +Q + V K++
Sbjct: 39 QCFSSCHMPLTGYEVWLGTLFQNPQHG--------EPSLQRVPVAKMVCGPSG------- 83
Query: 292 NDIALLRLERPPRLNGTHLMSC-------------CY-----YLAYADNGIS-------- 325
+ + LL+LER LN + C C G
Sbjct: 84 SQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKG--TGNDTVLNVALL 141
Query: 326 --IDYN-----------SGQMCVGGNVG-KDSCNGDSGGPL------TWMGSFDSAISAR 365
I +MC G + +C GD GGPL +W
Sbjct: 142 NVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSW----------- 190
Query: 366 TYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
L G++ C P V++R S F+ WI +
Sbjct: 191 -VLEGIIIPN-RVCARSRWPAVFTRVSVFVDWIHKVM 225
Score = 35.7 bits (83), Expect = 0.043
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 24/77 (31%)
Query: 396 RWIL----------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHE 445
+WIL L + V LG QN P +Q + V + +
Sbjct: 32 QWILTARQCFSSCHMPLTGYEVWLGTLF-------QNPQHG---EPSLQRVPVAKMVCGP 81
Query: 446 NYTGTKNDIALLRLEKS 462
+ + + LL+LE+S
Sbjct: 82 SG----SQLVLLKLERS 94
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 140 bits (356), Expect = 9e-38
Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 42/210 (20%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
+ V LG + P VQ+I+V + DIALL+L
Sbjct: 69 SYKVILGAHQEVNL------------EPHVQEIEVSRLFLEPTR------KDIALLKLSS 110
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKA 583
V P CLP + + + GWG T+ + L Q V ++ C
Sbjct: 111 PAVITDKVIPACLP--SPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNR 168
Query: 584 R--YQELDPSSQICVGGKVG-KDACKGDSGGPL------TWMGSFDSAILARNYLIGLVS 634
S+++C G G D+C+GD+GGPL + L G+ S
Sbjct: 169 YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKY------------ILQGVTS 216
Query: 635 YGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+G C + PGVY R++ F+ WI +
Sbjct: 217 WGLGCARPN-KPGVYVRVSRFVTWIEGVMR 245
Score = 104 bits (261), Expect = 4e-25
Identities = 60/272 (22%), Positives = 84/272 (30%), Gaps = 97/272 (35%)
Query: 203 CGLASEQ------RIIGGYVAKLGSIPWIARIAYSR----------TP-------HCATN 239
CG + R++GG VA S PW + +P HC
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63
Query: 240 PEQISS--VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALL 297
+ SS V LG H + P VQ+I V ++ DIALL
Sbjct: 64 SPRPSSYKVILGAHQEVNL----------EPHVQEIEVSRLFLEPTR-------KDIALL 106
Query: 298 RLERPPRLNGT--------------HLMSC-----------------------------C 314
+L P + C C
Sbjct: 107 KLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVC 166
Query: 315 YYLAYADNGISIDYNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVS 373
+ + + S ++C G G DSC GD+GGPL + L G+ S
Sbjct: 167 NRYEFLNGRVQ----STELCAGHLAGGTDSCQGDAGGPLV------CFEKDKYILQGVTS 216
Query: 374 LGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
G C PGVY R S F+ WI + ++
Sbjct: 217 WG-LGCARPNKPGVYVRVSRFVTWIEGVMRNN 247
Score = 91.5 bits (228), Expect = 8e-21
Identities = 42/173 (24%), Positives = 56/173 (32%), Gaps = 54/173 (31%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
V P CLP + Y + + GWG T+ + +L V + +C N
Sbjct: 117 KVIPACLPSPN---YVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLN 173
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM- 790
G + LC G G DSC GD+GGPL+
Sbjct: 174 G--------------------RVQSTE----------LCAGHLAGGTDSCQGDAGGPLVC 203
Query: 791 -----WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ L G+ S G C PGVY R S F+ WI
Sbjct: 204 FEKDKY------------ILQGVTSWGLG-CARPNKPGVYVRVSRFVTWIEGV 243
Score = 82.7 bits (205), Expect = 1e-17
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVGGKVG-KDSCYGDSGGPLT 119
T+ + L Q V ++ C S+++C G G DSC GD+GGPL
Sbjct: 143 ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLV 202
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ L G+ S+G C + PGVY R++ F+ WI +
Sbjct: 203 ------CFEKDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWIEGVMR 245
Score = 38.0 bits (89), Expect = 0.009
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 25/76 (32%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
W+L + V LG + P VQ+I+V +
Sbjct: 52 EWVLTAAHCLEKSPRPSSYKVILGAHQEVNL------------EPHVQEIEVSRLFLEPT 99
Query: 447 YTGTKNDIALLRLEKS 462
DIALL+L
Sbjct: 100 R----KDIALLKLSSP 111
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 139 bits (353), Expect = 1e-37
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
+R G + + H +Y+ + ND+A+L+L S
Sbjct: 53 IRAGSLSR---------------TSGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIP 95
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG--RSSLELLAVQQKVFNSEECKAR 584
G + L + + + VAGWG T +G + + LL V + + C+A+
Sbjct: 96 SGGNIGYARLA--ASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQ 153
Query: 585 YQELD-PSSQICVG-GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTK 642
Y + C G GKD+C+GDSGGP+ + + N LIG VS+G C +
Sbjct: 154 YGTSAITNQMFCAGVSSGGKDSCQGDSGGPI---------VDSSNTLIGAVSWGNGCA-R 203
Query: 643 SENPGVYTRMTYFLQWILDH 662
GVY + +I +
Sbjct: 204 PNYSGVYASVGALRSFIDTY 223
Score = 103 bits (258), Expect = 6e-25
Identities = 48/250 (19%), Positives = 70/250 (28%), Gaps = 86/250 (34%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC------------------ATNPEQISSVRLGEHD 252
I+GG A G P+I I+ + P C +R G
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGF-QIRAGSLS 59
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMS 312
S + V H +SG ND+A+L+L G +
Sbjct: 60 RTSGG-------------ITSSLSSVRVHPSYSG---NNNDLAILKLSTSIPSGGNIGYA 103
Query: 313 C-------------CY-----YLAYADNGIS----------ID-------YNSGQ----- 332
+ + + Y +
Sbjct: 104 RLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQM 163
Query: 333 MCVG-GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRT 391
C G + GKDSC GDSGGP+ + + LIG VS G C GVY+
Sbjct: 164 FCAGVSSGGKDSCQGDSGGPI---------VDSSNTLIGAVSWG-NGCARPNYSGVYASV 213
Query: 392 SYFLRWILDH 401
+I +
Sbjct: 214 GALRSFIDTY 223
Score = 87.2 bits (217), Expect = 2e-19
Identities = 39/169 (23%), Positives = 50/169 (29%), Gaps = 48/169 (28%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEK--KIPSHILLGVNQLVYDRYLCTAIYE 730
+ L + G VAGWG T + LL V + R C A Y
Sbjct: 99 NIGYARLAASG---SDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG 155
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPL 789
+ I+ C G GKDSC GDSGGP+
Sbjct: 156 TSAIT-------------------------------NQMFCAGVSSGGKDSCQGDSGGPI 184
Query: 790 MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ + L+G VS G C GVY +I
Sbjct: 185 V---------DSSNTLIGAVSWGNG-CARPNYSGVYASVGALRSFIDTY 223
Score = 86.4 bits (215), Expect = 3e-19
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 73 LLAVQQKVFNSEKCKARYQKLD-PSSQICVG-GKVGKDSCYGDSGGPLTWMGSFDSAISA 130
LL V + + C+A+Y + C G GKDSC GDSGGP+ + +
Sbjct: 137 LLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPI---------VDS 187
Query: 131 RNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
N LIG VS+G C + GVY + +I +
Sbjct: 188 SNTLIGAVSWG-NGCARPNYSGVYASVGALRSFIDTY 223
Score = 40.2 bits (95), Expect = 0.001
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 15/56 (26%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTKNDIALLRLEKS 462
+R G + + H +Y+G ND+A+L+L S
Sbjct: 53 IRAGSLSR---------------TSGGITSSLSSVRVHPSYSGNNNDLAILKLSTS 93
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 140 bits (355), Expect = 1e-37
Identities = 55/218 (25%), Positives = 89/218 (40%), Gaps = 45/218 (20%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
+ V+LG ++ + + + + H +Y G++ DIALL+L +
Sbjct: 51 AYEVKLGAHQ---------LDSYS---EDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSR 98
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG---RSSLELLAVQQKVFNSEE 580
++ Y+ P+ LP A + V GWG + L ++ + + E
Sbjct: 99 PITFSRYIRPISLP--AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRET 156
Query: 581 CKARYQELDPSSQ--------ICVGGKVG-KDACKGDSGGPL------TWMGSFDSAILA 625
C + Y + +C G G KDAC+GDSGGPL W
Sbjct: 157 CNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLW---------- 206
Query: 626 RNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
YL G+VS+G CG ++ PGVYT + + WI +
Sbjct: 207 --YLTGIVSWGDACGARN-RPGVYTLASSYASWIQSKV 241
Score = 101 bits (255), Expect = 3e-24
Identities = 62/266 (23%), Positives = 80/266 (30%), Gaps = 99/266 (37%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-------------------ATNPEQISSVRLGEH 251
I GG A G PW I Y C + E V+LG H
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYE-VKLGAH 59
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----- 306
+S + + +I H + + DIALL+L RP +
Sbjct: 60 QLDSYS----------EDAKVSTLKDIIPHPSYLQ-EGSQGDIALLQLSRPITFSRYIRP 108
Query: 307 ------------GTH---------------------------LMS---C-CYYLAYADNG 323
G H L+S C Y A
Sbjct: 109 ISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE 168
Query: 324 ISIDYNSGQMCVGGNVG-KDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVSLGP 376
+C G G KD+C GDSGGPL W YL G+VS G
Sbjct: 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLW------------YLTGIVSWG- 215
Query: 377 ASCGVYEIPGVYSRTSYFLRWILDHL 402
+CG PGVY+ S + WI +
Sbjct: 216 DACGARNRPGVYTLASSYASWIQSKV 241
Score = 89.3 bits (222), Expect = 8e-20
Identities = 47/172 (27%), Positives = 66/172 (38%), Gaps = 41/172 (23%)
Query: 673 HYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE---KKIPSHILLGVNQLVYDRYLCTAI 728
Y++P+ LP +F G V GWG + L + + R C ++
Sbjct: 104 RYIRPISLPAAQ---ASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSL 160
Query: 729 YERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGP 788
Y + + + V + +C A Y G KD+C GDSGGP
Sbjct: 161 YNIDAKPEEPH-----FVQEDMVC-AGYVEGG-----------------KDACQGDSGGP 197
Query: 789 LM--WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
L G + YL GIVS G + CG PGVYT S + WI +
Sbjct: 198 LSCPVEGLW--------YLTGIVSWGDA-CGARNRPGVYTLASSYASWIQSK 240
Score = 85.8 bits (213), Expect = 1e-18
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 28/124 (22%)
Query: 60 ALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQ--------ICVGGKVG-KDSC 110
+ + L ++ + + E C + Y + +C G G KD+C
Sbjct: 131 HVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDAC 190
Query: 111 YGDSGGPL------TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWI 164
GDSGGPL W YL G+VS+G + CG PGVYT + + WI
Sbjct: 191 QGDSGGPLSCPVEGLW------------YLTGIVSWG-DACGARNRPGVYTLASSYASWI 237
Query: 165 LDHL 168
+
Sbjct: 238 QSKV 241
Score = 37.3 bits (87), Expect = 0.012
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 23/78 (29%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
+W+L H + + V+LG + + + + + H +
Sbjct: 34 QWVLSAAHCFPSEHHKEAYEVKLGAHQL------------DSYSEDAKVSTLKDIIPHPS 81
Query: 447 YT--GTKNDIALLRLEKS 462
Y G++ DIALL+L +
Sbjct: 82 YLQEGSQGDIALLQLSRP 99
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 147 bits (373), Expect = 3e-37
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 24/183 (13%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
V + + H+ Y + + DIALL+LE + + P+CLP + RN +
Sbjct: 456 EDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLP--SKGDRNVIYTD 513
Query: 551 TIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELD-PSSQICVGGKVG-KDACKG 607
V GWG + L + + +EEC+ RY+ IC G + G KDACKG
Sbjct: 514 CWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKG 573
Query: 608 DSGGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILD 661
DSGGPL W +L+G+ S+G C + PGVYT + ++ WIL+
Sbjct: 574 DSGGPLSCKHNEVW------------HLVGITSWGEGCAQRE-RPGVYTNVVEYVDWILE 620
Query: 662 HLE 664
+
Sbjct: 621 KTQ 623
Score = 104 bits (260), Expect = 3e-23
Identities = 56/277 (20%), Positives = 91/277 (32%), Gaps = 97/277 (35%)
Query: 195 HLLPPKDKCGLASEQRIIGGYVAKLGSIPWIARIAYSRTP-------------------H 235
L ++C + RI+GG + G PW + + H
Sbjct: 372 RLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAH 431
Query: 236 C---ATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN 292
C +P+ + V G + + V ++I H+ + +
Sbjct: 432 CFYGVESPKIL-RVYSGILNQSEI----------KEDTSFFGVQEIIIHDQYKMAES-GY 479
Query: 293 DIALLRLERPPRLNGT-------------HLMSCCY-----YLAYADNG----------- 323
DIALL+LE + + + C+ Y D
Sbjct: 480 DIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPL 539
Query: 324 ISID-----YNSGQ-----MCVG---GNVGKDSCNGDSGGPL------TWMGSFDSAISA 364
++ + Y + +C G G GKD+C GDSGGPL W
Sbjct: 540 VTNEECQKRYRGHKITHKMICAGYREG--GKDACKGDSGGPLSCKHNEVW---------- 587
Query: 365 RTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
+L+G+ S G C E PGVY+ ++ WIL+
Sbjct: 588 --HLVGITSWG-EGCAQRERPGVYTNVVEYVDWILEK 621
Score = 85.7 bits (212), Expect = 2e-17
Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 42/167 (25%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
+P+CLP D V GWG + + + L + C Y
Sbjct: 495 SQRPICLPSKG---DRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRG 551
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+ I+ + +C A Y GKD+C GDSGGPL
Sbjct: 552 HKIT------------HKMIC-AGYREG-----------------GKDACKGDSGGPLS- 580
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ +L+GI S G C PGVYT ++ WIL
Sbjct: 581 -----CKHNEVWHLVGITSWGEG-CAQRERPGVYTNVVEYVDWILEK 621
Score = 85.7 bits (212), Expect = 2e-17
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD-PSSQICVGGKVG-KDSCYGDSGGPL---- 118
+ L + + +E+C+ RY+ IC G + G KD+C GDSGGPL
Sbjct: 524 LRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKH 583
Query: 119 --TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
W +L+G+ S+G E C + E PGVYT + ++ WIL+ +
Sbjct: 584 NEVW------------HLVGITSWG-EGCAQRERPGVYTNVVEYVDWILEKTQ 623
Score = 37.5 bits (87), Expect = 0.020
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 431 PPVQDIKVIQFLTHENYTGTK--NDIALLRLEK 461
V + + H+ Y + DIALL+LE
Sbjct: 456 EDTSFFGVQEIIIHDQYKMAESGYDIALLKLET 488
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 138 bits (350), Expect = 5e-37
Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 49/218 (22%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
V+L EQ++ Q + V + + H + T DIALL LE+
Sbjct: 55 TLRVQLREQHL---------------YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEE 99
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG---RSSLELLAVQQKVFNSEE 580
+ VH V LP A V GWG ++ L V+ + +
Sbjct: 100 PVNISSRVHTVMLP--PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHI 157
Query: 581 CKARYQELDPSSQ---------ICVGGKVGKDACKGDSGGPL------TWMGSFDSAILA 625
C A+Y + +C G +D+C+GDSGGPL TW
Sbjct: 158 CDAKYHLGAYTGDDVRIIRDDMLCAGNS-QRDSCQGDSGGPLVCKVNGTW---------- 206
Query: 626 RNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
G+VS+G C + PG+YTR+TY+L WI ++
Sbjct: 207 --LQAGVVSWGEGCAQPN-RPGIYTRVTYYLDWIHHYV 241
Score = 96.2 bits (240), Expect = 2e-22
Identities = 57/269 (21%), Positives = 77/269 (28%), Gaps = 105/269 (39%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQISS---VRL 248
I+GG A PW + HC + + V+L
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 249 GEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-- 306
E Q + V ++I H F DIALL LE P ++
Sbjct: 61 REQHLY-------------YQDQLLPVSRIIVHPQFYI-IQTGADIALLELEEPVNISSR 106
Query: 307 ---------GTHL---MSC----------------------------------CYYLAYA 320
M C Y A
Sbjct: 107 VHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGA 166
Query: 321 DNGISIDYNSGQM-CVGGNVGKDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVS 373
G + M C G + +DSC GDSGGPL TW G+VS
Sbjct: 167 YTGDDVRIIRDDMLCAGNS-QRDSCQGDSGGPLVCKVNGTW------------LQAGVVS 213
Query: 374 LGPASCGVYEIPGVYSRTSYFLRWILDHL 402
G C PG+Y+R +Y+L WI ++
Sbjct: 214 WG-EGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 90.0 bits (224), Expect = 2e-20
Identities = 48/176 (27%), Positives = 66/176 (37%), Gaps = 43/176 (24%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE---KKIPSHILLGVNQLVYDRYLCTAIY 729
V V LP F G V GWG + P L V + + ++C A Y
Sbjct: 106 RVHTVMLPPAS---ETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKY 162
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPL 789
+ D + ++ D LC G +DSC GDSGGPL
Sbjct: 163 HLGAYTGDDVR----IIRDDMLC--------------------AGNSQRDSCQGDSGGPL 198
Query: 790 M--WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT-PEAP 842
+ G++ G+VS G C PG+YTR +Y+L WI P+ P
Sbjct: 199 VCKVNGTW--------LQAGVVSWGEG-CAQPNRPGIYTRVTYYLDWIHHYVPKKP 245
Score = 85.0 bits (211), Expect = 1e-18
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 29/108 (26%)
Query: 76 VQQKVFNSEKCKARYQKLDPSSQ---------ICVGGKVGKDSCYGDSGGPL------TW 120
V+ + + C A+Y + +C G +DSC GDSGGPL TW
Sbjct: 148 VKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS-QRDSCQGDSGGPLVCKVNGTW 206
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
G+VS+G E C + PG+YTR+TY+L WI ++
Sbjct: 207 ------------LQAGVVSWG-EGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 35.7 bits (83), Expect = 0.037
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 27/79 (34%)
Query: 396 RWIL----------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHE 445
+W+L L V+L EQ++ Q + V + + H
Sbjct: 37 QWVLTAAHCVGPDVKDLATLRVQLREQHL---------------YYQDQLLPVSRIIVHP 81
Query: 446 NYT--GTKNDIALLRLEKS 462
+ T DIALL LE+
Sbjct: 82 QFYIIQTGADIALLELEEP 100
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 139 bits (352), Expect = 7e-37
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 24/180 (13%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
IK+ H Y +ND++LL LE + G PVC P +
Sbjct: 113 QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRT 172
Query: 551 T-IVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDS 609
+++GW L + EEC + C A
Sbjct: 173 RGLLSGWARN-GTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERS--SVAAMHWMD 229
Query: 610 GGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
G + +W +L G++ P G ++ + + T+++ + W +
Sbjct: 230 GSVVTREHRGSW------------FLTGVLGSQP-VGGQA-HMVLVTKVSRYSLWFKQIM 275
Score = 93.6 bits (233), Expect = 4e-21
Identities = 34/280 (12%), Positives = 69/280 (24%), Gaps = 101/280 (36%)
Query: 194 WHLLPPKDKCGLASE----QRIIGGYVAKLGSIPWIARIAYSRTP--------------- 234
+ L +C + L +PW ++ S
Sbjct: 32 YRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLT 91
Query: 235 --HCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN 292
C+ I+ V+ + + DP I++ V H + + N
Sbjct: 92 TAKCSLLHRNIT-VKTYFNRTSQDP-------------LMIKITHVHVHMRYDAD-AGEN 136
Query: 293 DIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCV-------GGNV------ 339
D++LL LE P + G L C + + G ++
Sbjct: 137 DLSLLELEWPIQCPGAGLPVC---TP-EKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTT 192
Query: 340 ----------------------------GKDSCNGDSGGPL------TWMGSFDSAISAR 365
+ + G + +W
Sbjct: 193 RPVTLVEGEECGQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREHRGSW----------- 241
Query: 366 TYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
+L G++ P G + ++ S + W ++ H
Sbjct: 242 -FLTGVLGSQP--VGGQAHMVLVTKVSRYSLWFKQIMNAH 278
Score = 92.1 bits (229), Expect = 1e-20
Identities = 23/175 (13%), Positives = 46/175 (26%), Gaps = 46/175 (26%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQLVY 720
LE + P PVC P D ++ +++GW + + L +
Sbjct: 142 ELEWPIQCPG--AGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGN-SLTTRPVTLV 198
Query: 721 DRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDS 780
+ C + +++ T C +
Sbjct: 199 EGEECGQVL------------------------------NVTVTTR--TYCERS--SVAA 224
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ G + R +L G++ P G + T+ S + W
Sbjct: 225 MHWMDGSVVT------REHRGSWFLTGVLGSQP--VGGQAHMVLVTKVSRYSLWF 271
Score = 80.5 bits (199), Expect = 1e-16
Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 22/102 (21%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPL------TWMGSFDS 126
L + E+C + C + + G + +W
Sbjct: 190 LTTRPVTLVEGEECGQVLNVTVTTRTYCERS--SVAAMHWMDGSVVTREHRGSW------ 241
Query: 127 AISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
+L G++ P G + + T+++ + W +
Sbjct: 242 ------FLTGVLGSQP--VGGQAHMVLVTKVSRYSLWFKQIM 275
Score = 34.7 bits (80), Expect = 0.11
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 431 PPVQDIKVIQFLTHENYTGTK--NDIALLRLEK 461
IK+ H Y ND++LL LE
Sbjct: 113 QDPLMIKITHVHVHMRYDADAGENDLSLLELEW 145
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 137 bits (347), Expect = 1e-36
Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 494 QDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGY-VHPVCLPYGNAMTRNFENENTI 552
+ + + Y +N+ A++ E + + + LP + + + + +
Sbjct: 64 GTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELP--SLLYDPEPDTSVL 121
Query: 553 VAGWGVTEDG--RSSLELLAVQQKVFNSEECKARYQELDPSSQI-----CVGGKVG-KDA 604
V+GWG T S +L+ V + + C+ +Y++++ I C GG+
Sbjct: 122 VSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYI 181
Query: 605 CKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
GD+G P L+G+ SY + ++ P V+ R+ Y++ I D +
Sbjct: 182 GYGDAGDPAV----------QNGTLVGVASYISSMPSEF--PSVFLRVGYYVLDIKDIIS 229
Query: 665 DEV 667
+V
Sbjct: 230 GKV 232
Score = 100 bits (252), Expect = 5e-24
Identities = 46/262 (17%), Positives = 67/262 (25%), Gaps = 104/262 (39%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC------------------ATNPEQISSVRLGEHD 252
IIGG + + PW + P C T P I S+ G
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDI-SIHYGSSY 59
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNG----- 307
+ + K I + M+N+ A++ E P +L+
Sbjct: 60 RTTK--------------GTSVMAKKIYIVRYHPL-TMQNNYAVIETEMPIKLDDKTTKK 104
Query: 308 --------------------------------THLM------------SCCYYLAYADNG 323
LM Y AD
Sbjct: 105 IELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKY 164
Query: 324 ISIDYNSGQMCVGG-NVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCG 380
I G C GG GD+G P L+G+ S +S
Sbjct: 165 IY----DGVFCAGGEYDETYIGYGDAGDPAVQNG------------TLVGVASYI-SSMP 207
Query: 381 VYEIPGVYSRTSYFLRWILDHL 402
E P V+ R Y++ I D +
Sbjct: 208 S-EFPSVFLRVGYYVLDIKDII 228
Score = 87.6 bits (218), Expect = 1e-19
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQI-----CVGGKVG-KDSCYGDSGG 116
+ + S +L+ V + + C+ +Y++++ I C GG+ YGD+G
Sbjct: 129 NFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGD 188
Query: 117 PLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDEW 172
P L+G+ SY E P V+ R+ Y++ I D + +
Sbjct: 189 PAV----------QNGTLVGVASYI-SSMPS-EFPSVFLRVGYYVLDIKDIISGKV 232
Score = 83.4 bits (207), Expect = 4e-18
Identities = 37/183 (20%), Positives = 57/183 (31%), Gaps = 51/183 (27%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKI--PSHILLGVNQL 718
E + + + + + LP Y+ E +V+GWG T K S L+ N
Sbjct: 90 ETEMPIKLDD-KTTKKIELPSLL---YDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFT 145
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG- 777
V DR C Y++ IY+ C GG+
Sbjct: 146 VVDRKSCEEQYKQIEAD-----------------KYIYDG----------VFCAGGEYDE 178
Query: 778 KDSCNGDSGGPLM--WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GD+G P + L+G+ S S P V+ R Y++ I
Sbjct: 179 TYIGYGDAGDPAVQNG------------TLVGVASYISS-MPS-EFPSVFLRVGYYVLDI 224
Query: 836 LAT 838
Sbjct: 225 KDI 227
Score = 31.4 bits (72), Expect = 0.83
Identities = 8/89 (8%), Positives = 23/89 (25%), Gaps = 30/89 (33%)
Query: 396 RWIL--------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY 447
+++ D + G T + + + Y
Sbjct: 34 NFVITAAQCVDGTKPSDISIHYGSSYRTTK----------------GTSVMAKKIYIVRY 77
Query: 448 --TGTKNDIALLRLEKSPDHIVRLGEQNV 474
+N+ A++ E ++L ++
Sbjct: 78 HPLTMQNNYAVIETEMP----IKLDDKTT 102
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 139 bits (353), Expect = 1e-36
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 24/180 (13%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NE 549
IK+ H Y +ND++LL LE + G PVC P +
Sbjct: 154 QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRT 213
Query: 550 NTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDS 609
+++GW L + EEC + C A
Sbjct: 214 RGLLSGWA-RNGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERS--SVAAMHWMD 270
Query: 610 GGPL------TWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
G + +W +L G++ P G ++ + + T+++ + W +
Sbjct: 271 GSVVTREHRGSW------------FLTGVLGSQP-VGGQA-HMVLVTKVSRYSLWFKQIM 316
Score = 95.5 bits (238), Expect = 1e-21
Identities = 32/258 (12%), Positives = 64/258 (24%), Gaps = 95/258 (36%)
Query: 209 QRIIGGYVAKLGSIPWIARIAYSRTP-----------------HCATNPEQISSVRLGEH 251
L +PW ++ S C+ I+ V+ +
Sbjct: 92 VLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNIT-VKTYFN 150
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLM 311
+ DP I++ V H + + ND++LL LE P + G L
Sbjct: 151 RTSQDP-------------LMIKITHVHVHMRYDAD-AGENDLSLLELEWPIQCPGAGLP 196
Query: 312 SC----------------CY-------------YLAYADNGISIDYN-----------SG 331
C L + ++ +
Sbjct: 197 VCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGNSLTTRPVTL-VEGEECGQVLNVTVTTR 255
Query: 332 QMCVGGNVGKDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
C + + G + +W +L G++ P G
Sbjct: 256 TYCERS--SVAAMHWMDGSVVTREHRGSW------------FLTGVLGSQP--VGGQAHM 299
Query: 386 GVYSRTSYFLRWILDHLD 403
+ ++ S + W ++
Sbjct: 300 VLVTKVSRYSLWFKQIMN 317
Score = 89.8 bits (223), Expect = 1e-19
Identities = 23/175 (13%), Positives = 46/175 (26%), Gaps = 46/175 (26%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQLVY 720
LE + P PVC P D ++ +++GW + + L +
Sbjct: 183 ELEWPIQCPG--AGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGN-SLTTRPVTLV 239
Query: 721 DRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDS 780
+ C + +++ T C +
Sbjct: 240 EGEECGQVL------------------------------NVTVTTR--TYCERS--SVAA 265
Query: 781 CNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ G + R +L G++ P G + T+ S + W
Sbjct: 266 MHWMDGSVVT------REHRGSWFLTGVLGSQP--VGGQAHMVLVTKVSRYSLWF 312
Score = 80.1 bits (198), Expect = 2e-16
Identities = 12/107 (11%), Positives = 29/107 (27%), Gaps = 22/107 (20%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPL------TWM 121
L + E+C + C + + G + +W
Sbjct: 226 DLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERS--SVAAMHWMDGSVVTREHRGSW- 282
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
+L G++ P G + + T+++ + W +
Sbjct: 283 -----------FLTGVLGSQP--VGGQAHMVLVTKVSRYSLWFKQIM 316
Score = 35.1 bits (81), Expect = 0.076
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 431 PPVQDIKVIQFLTHENYTGTK--NDIALLRLEK 461
IK+ H Y ND++LL LE
Sbjct: 154 QDPLMIKITHVHVHMRYDADAGENDLSLLELEW 186
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 136 bits (346), Expect = 2e-36
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 460 EKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENY--TDSGTKNDIA 517
++ V +GE N +N + Q + V + + H + D DIA
Sbjct: 48 DRELTFRVVVGEHN---------LNQNN---GTEQYVGVQKIVVHPYWNTDDVAAGYDIA 95
Query: 518 LLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVF 576
LLRL +S N YV LP A T N + GWG+T +G+ + L
Sbjct: 96 LLRLAQSVTLNSYVQLGVLP--RAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTV 153
Query: 577 NSEECKARYQELD--PSSQICVGGKVGKDACKGDSGGPLT--WMGSFDSAILARNYLIGL 632
+ C + +S +C GG + C+GDSGGPL G + + G+
Sbjct: 154 DYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQY--------AVHGV 205
Query: 633 VSYGPT--CGTKSENPGVYTRMTYFLQWILDHLE 664
S+ C P V+TR++ ++ WI + +
Sbjct: 206 TSFVSRLGCNVTR-KPTVFTRVSAYISWINNVIA 238
Score = 107 bits (270), Expect = 2e-26
Identities = 50/258 (19%), Positives = 84/258 (32%), Gaps = 87/258 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGE 250
++GG A+ S P + Y HC V +GE
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFR-VVVGE 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHF-SGEPNMRNDIALLRLERPPRLNGT- 308
H+ N + Q + V K++ H ++ + + DIALLRL + LN
Sbjct: 60 HNLNQN----------NGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYV 109
Query: 309 -------------HLMSC------------------------------CYYLAYADNGIS 325
+ C C +Y + +
Sbjct: 110 QLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVK 169
Query: 326 IDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS-CGVYEI 384
+ +C GG+ + C GDSGGPL ++ + + G+ S C V
Sbjct: 170 ----NSMVCAGGDGVRSGCQGDSGGPLH------CLVNGQYAVHGVTSFVSRLGCNVTRK 219
Query: 385 PGVYSRTSYFLRWILDHL 402
P V++R S ++ WI + +
Sbjct: 220 PTVFTRVSAYISWINNVI 237
Score = 95.3 bits (238), Expect = 4e-22
Identities = 36/170 (21%), Positives = 51/170 (30%), Gaps = 46/170 (27%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
YVQ LP + GWGLT + L D +C++
Sbjct: 108 YVQLGVLPRAG---TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYW 164
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM- 790
+ +C GG + C GDSGGPL
Sbjct: 165 GST--------------------VKNSM----------VCAGGDGVRSGCQGDSGGPLHC 194
Query: 791 -WMGSFDRSISARTYLLGIVSLGPST-CGMLRIPGVYTRTSYFLRWILAT 838
G + + G+ S C + R P V+TR S ++ WI
Sbjct: 195 LVNGQY--------AVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNV 236
Score = 81.1 bits (201), Expect = 3e-17
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD--PSSQICVGGKVGKDSCYGDSGGPLTWMG 122
+ + + L + C + +S +C GG + C GDSGGPL
Sbjct: 137 TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLH--- 193
Query: 123 SFDSAISARNYLIGLVSYGPED-CGKTENPGVYTRMTYFLQWILDHLE 169
++ + + G+ S+ C T P V+TR++ ++ WI + +
Sbjct: 194 ---CLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238
Score = 36.8 bits (86), Expect = 0.017
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 22/77 (28%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
W++ D V +GE N + + Q + V + + H +
Sbjct: 38 NWVMTAAHCVDRELTFRVVVGEHN-LNQNN-----------GTEQYVGVQKIVVHPYWNT 85
Query: 450 TK----NDIALLRLEKS 462
DIALLRL +S
Sbjct: 86 DDVAAGYDIALLRLAQS 102
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 141 bits (358), Expect = 2e-36
Identities = 50/213 (23%), Positives = 77/213 (36%), Gaps = 29/213 (13%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-NDIALLRLEKSP 525
VR+G+ + + + + H Y DIAL++L+K
Sbjct: 226 VRIGKHSRTRYER-----------NIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPV 274
Query: 526 EWNGYVHPVCLPYGNAMTRNF-ENENTIVAGWGVTED-------GRSSLELLAVQQKVFN 577
++ Y+HPVCLP V GWG ++ L V +
Sbjct: 275 AFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVE 334
Query: 578 SEECKARYQELDPSSQICVG----GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLV 633
CK + + C G DAC+GDSGGP F++ R Y +G+V
Sbjct: 335 RPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN----RWYQMGIV 390
Query: 634 SYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
S+G C G YT + +WI ++
Sbjct: 391 SWGEGCDRD-GKYGFYTHVFRLKKWIQKVIDQF 422
Score = 89.5 bits (222), Expect = 5e-19
Identities = 44/173 (25%), Positives = 58/173 (33%), Gaps = 41/173 (23%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKKIP-------SHILLGVNQLVYDRYLC 725
Y+ PVCLP + G V GWG ++ +L VN + +R +C
Sbjct: 279 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC 338
Query: 726 TAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDS 785
+ D C A G GK D+C GDS
Sbjct: 339 KDSTRIR-------------ITDNMFC-A-------------GYKPDEGK-RGDACEGDS 370
Query: 786 GGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GGP + F+ R Y +GIVS G C G YT +WI
Sbjct: 371 GGPFVMKSPFNN----RWYQMGIVSWGEG-CDRDGKYGFYTHVFRLKKWIQKV 418
Score = 87.6 bits (217), Expect = 2e-18
Identities = 44/290 (15%), Positives = 80/290 (27%), Gaps = 90/290 (31%)
Query: 192 KNWHLLPPKDKCGLASEQRIIGGYVAKLGSIPWIARIAYSRTP----------------- 234
K+ ++ + RI+ G A++G PW +
Sbjct: 147 KSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTA 206
Query: 235 -HCATNPEQISS-------VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSG 286
HC P + VR+G+H + + K+ H ++
Sbjct: 207 AHCLLYPPWDKNFTENDLLVRIGKHSRTRYER---------NIEKISMLEKIYIHPRYNW 257
Query: 287 EPNMRNDIALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCV----------- 335
N+ DIAL++L++P + ++ C L + +G
Sbjct: 258 RENLDRDIALMKLKKPVAFS-DYIHPVC--LP-DRETAASLLQAGYKGRVTGWGNLKETW 313
Query: 336 ----GGN------------VGKDSCNGDSGGPLT-----------WMGSFDS-------- 360
G V + C + +T D+
Sbjct: 314 TANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGP 373
Query: 361 -----AISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
+ R Y +G+VS G C G Y+ +WI +D
Sbjct: 374 FVMKSPFNNRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVIDQF 422
Score = 82.2 bits (203), Expect = 1e-16
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 68 RPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG----GKVGKDSCYGDSGGPLTWMGS 123
L V + CK + + C G D+C GDSGGP
Sbjct: 320 GQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP 379
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
F++ R Y +G+VS+G E C + G YT + +WI ++
Sbjct: 380 FNN----RWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQKVIDQF 422
Score = 37.5 bits (87), Expect = 0.016
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK---NDIALLRLEK 461
VR+G+ + + + + H Y + DIAL++L+K
Sbjct: 226 VRIGKHSRTRYER-----------NIEKISMLEKIYIHPRYNWRENLDRDIALMKLKK 272
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 135 bits (343), Expect = 2e-36
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 35/203 (17%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG + D Q IK + H Y+ ND+ L++L
Sbjct: 49 VHLGSDT-LGDRR-------------AQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQAR 94
Query: 527 WNGYVHPVCLPYGNAMTRNF-ENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKA 583
+ V V LP +R V+GWG T + +L+ V K+ + ++C
Sbjct: 95 LSSMVKKVRLP-----SRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTK 149
Query: 584 RYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TCGT 641
Y++L +S +C G K+AC GDSGGPL R L GLVS+G CG
Sbjct: 150 VYKDLLENSMLCAGIPDSKKNACNGDSGGPLV----------CRGTLQGLVSWGTFPCGQ 199
Query: 642 KSENPGVYTRMTYFLQWILDHLE 664
++ PGVYT++ F +WI D ++
Sbjct: 200 PND-PGVYTQVCKFTKWINDTMK 221
Score = 104 bits (261), Expect = 2e-25
Identities = 55/247 (22%), Positives = 73/247 (29%), Gaps = 82/247 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
II G GS PW + HC N +V LG
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGD-- 58
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----------- 306
Q I+ K H +S + ND+ L++L RL+
Sbjct: 59 ----------RRAQRIKASKSFRHPGYSTQ-THVNDLMLVKLNSQARLSSMVKKVRLPSR 107
Query: 307 GTHLMSCCY-----YLAYADNGIS----------IDYN-----------SGQMCVG---G 337
+ C D I + +C G
Sbjct: 108 CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDS 167
Query: 338 NVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFL 395
K++CNGDSGGPL L GLVS G CG PGVY++ F
Sbjct: 168 --KKNACNGDSGGPLVCRG------------TLQGLVSWGTFPCGQPNDPGVYTQVCKFT 213
Query: 396 RWILDHL 402
+WI D +
Sbjct: 214 KWINDTM 220
Score = 86.4 bits (215), Expect = 3e-19
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISAR 131
L+ V K+ + + C Y+ L +S +C G K++C GDSGGPL R
Sbjct: 134 LMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLV----------CR 183
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L GLVS+G CG+ +PGVYT++ F +WI D ++
Sbjct: 184 GTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 83.7 bits (208), Expect = 3e-18
Identities = 44/167 (26%), Positives = 59/167 (35%), Gaps = 53/167 (31%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYE 730
V+ V LP G V+GWG T L+ V+ + CT +Y+
Sbjct: 98 MVKKVRLP-----SRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYK 152
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
L+ + LC A K++CNGDSGGPL+
Sbjct: 153 D-------------LLENSMLC-AGIP---------DS--------KKNACNGDSGGPLV 181
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L G+VS G CG PGVYT+ F +WI
Sbjct: 182 CRG------------TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI 216
Score = 36.4 bits (85), Expect = 0.020
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 20/73 (27%)
Query: 396 RWILD--H--LDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK 451
RW+L H ++++ V LG + D Q IK + H Y+
Sbjct: 34 RWVLTAAHCKMNEYTVHLGSDT-LGDRR-------------AQRIKASKSFRHPGYSTQT 79
Query: 452 --NDIALLRLEKS 462
ND+ L++L
Sbjct: 80 HVNDLMLVKLNSQ 92
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 136 bits (345), Expect = 2e-36
Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 41/218 (18%)
Query: 460 EKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIA 517
S + V LG ++ T+ P +KV + + H+++ + NDIA
Sbjct: 48 SSSRTYRVVLGRHSLSTN------------EPGSLAVKVSKLVVHQDWNSNQLSNGNDIA 95
Query: 518 LLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVF 576
LL+L + CLP A T N V GWG +G S L Q V
Sbjct: 96 LLKLASPVSLTDKIQLGCLP--AAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVV 153
Query: 577 NSEECKAR--YQELDPSSQICVGGKVGKDACKGDSGGPL-------TWMGSFDSAILARN 627
+ C + ++ IC GG +C GDSGGPL W
Sbjct: 154 DYATCSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQW------------ 201
Query: 628 YLIGLVSYGPT--CGTKSENPGVYTRMTYFLQWILDHL 663
+ G+VS+G + C P V+TR++ ++ WI +
Sbjct: 202 QVHGIVSFGSSLGCNYYH-KPSVFTRVSNYIDWINSVI 238
Score = 109 bits (276), Expect = 3e-27
Identities = 59/261 (22%), Positives = 91/261 (34%), Gaps = 92/261 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGE 250
++GG A+ S PW + Y + HC ++ V LG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYR-VVLGR 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHF-SGEPNMRNDIALLRLERPPRLNGTH 309
H +++ P ++V K++ H+ + S + + NDIALL+L P L
Sbjct: 60 HSLSTN----------EPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKI 109
Query: 310 LMSC-------------CY-----YLAYADNGIS---------IDYN------------- 329
+ C CY L +DY
Sbjct: 110 QLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVK 169
Query: 330 SGQMCVGGNVGKDSCNGDSGGPL-------TWMGSFDSAISARTYLIGLVSLGPAS-CGV 381
+ +C GG+ SCNGDSGGPL W + G+VS G + C
Sbjct: 170 TNMICAGGDGIISSCNGDSGGPLNCQGANGQW------------QVHGIVSFGSSLGCNY 217
Query: 382 YEIPGVYSRTSYFLRWILDHL 402
Y P V++R S ++ WI +
Sbjct: 218 YHKPSVFTRVSNYIDWINSVI 238
Score = 93.4 bits (233), Expect = 2e-21
Identities = 41/168 (24%), Positives = 53/168 (31%), Gaps = 41/168 (24%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
+Q CLP V GWG + IL LV D C+
Sbjct: 108 KIQLGCLPAAG---TILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWW 164
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+C GG SCNGDSGGPL
Sbjct: 165 GSTVKTNM------------------------------ICAGGDGIISSCNGDSGGPLNC 194
Query: 792 MGSFDRSISARTYLLGIVSLGPST-CGMLRIPGVYTRTSYFLRWILAT 838
+ + + + GIVS G S C P V+TR S ++ WI +
Sbjct: 195 -----QGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSV 237
Score = 80.3 bits (199), Expect = 5e-17
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKARYQKLD--PSSQICVGGKVGKDSCYGDSGGPL---- 118
+ L Q V + C ++ IC GG SC GDSGGPL
Sbjct: 137 TNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQG 196
Query: 119 ---TWMGSFDSAISARNYLIGLVSYGPE-DCGKTENPGVYTRMTYFLQWILDHL 168
W + G+VS+G C P V+TR++ ++ WI +
Sbjct: 197 ANGQW------------QVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238
Score = 37.6 bits (88), Expect = 0.009
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 22/77 (28%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
W+L + V LG ++ T+ P +KV + + H+++
Sbjct: 38 SWVLTAAHCISSSRTYRVVLGRHSLSTN------------EPGSLAVKVSKLVVHQDWNS 85
Query: 450 TK----NDIALLRLEKS 462
+ NDIALL+L
Sbjct: 86 NQLSNGNDIALLKLASP 102
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 136 bits (344), Expect = 3e-36
Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 40/209 (19%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEK 523
D+ LG +V D Q + V Q + +D+ L++L +
Sbjct: 49 DYEAWLGIHDVHGRGD----------EKCKQVLNVSQLVYGPEG------SDLVLMKLAR 92
Query: 524 SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKA 583
+ +V + LP N + E + V GWG T L + +E+C
Sbjct: 93 PAVLDDFVSTIDLP--NYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQ 150
Query: 584 RYQELDP--SSQICVGG-KVGKDACKGDSGGPL------TWMGSFDSAILARNYLIGLVS 634
++ S+IC G K+G C+GD GGPL ++G++
Sbjct: 151 HHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR------------MVLGVIV 198
Query: 635 YGPTCGTKSENPGVYTRMTYFLQWILDHL 663
G C + PG++ R+ Y+ +WI +
Sbjct: 199 PGRGCAIPN-RPGIFVRVAYYAKWIHKII 226
Score = 93.4 bits (233), Expect = 2e-21
Identities = 40/263 (15%), Positives = 76/263 (28%), Gaps = 102/263 (38%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC------------------ATNPEQISSVRLGEHD 252
++ G + +I W+ + Y C + + + LG HD
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYE-AWLGIHD 58
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT---- 308
+ D Q + V +++ +D+ L++L RP L+
Sbjct: 59 VHGRGD--------EKCKQVLNVSQLVYGPEG-------SDLVLMKLARPAVLDDFVSTI 103
Query: 309 ----------HLMSC-----------------------------CYYLAYADNGISIDYN 329
SC C ++
Sbjct: 104 DLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLN---- 159
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVSLGPASCGVY 382
++C G +G C GD GGPL ++G++ G C +
Sbjct: 160 ESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR------------MVLGVIVPG-RGCAIP 206
Query: 383 EIPGVYSRTSYFLRWILDHLDDH 405
PG++ R +Y+ +WI + +
Sbjct: 207 NRPGIFVRVAYYAKWIHKIILTY 229
Score = 91.1 bits (227), Expect = 1e-20
Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 44/168 (26%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
+V + LP V GWG T +L + + C+ +
Sbjct: 99 FVSTIDLPNYG---STIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGK 155
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM-- 790
+ + +C A E+ G C GD GGPL+
Sbjct: 156 VT-----------LNESEIC-AGAEKI-----------------GSGPCEGDYGGPLVCE 186
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+LG++ G C + PG++ R +Y+ +WI
Sbjct: 187 QHKMR--------MVLGVIVPGRG-CAIPNRPGIFVRVAYYAKWIHKI 225
Score = 84.6 bits (210), Expect = 2e-18
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 22/115 (19%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDP--SSQICVGG-KVGKDSCYGDSGGPL- 118
T L + +EKC ++ S+IC G K+G C GD GGPL
Sbjct: 125 YTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLV 184
Query: 119 -----TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
++G++ G C PG++ R+ Y+ +WI +
Sbjct: 185 CEQHKMR------------MVLGVIVPG-RGCAIPNRPGIFVRVAYYAKWIHKII 226
Score = 36.1 bits (84), Expect = 0.032
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 22/75 (29%)
Query: 396 RWIL--------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY 447
W+L L D+ LG +V D Q + V Q +
Sbjct: 33 SWVLTARQCFPSRDLKDYEAWLGIHDVHGRGD----------EKCKQVLNVSQLVYGPEG 82
Query: 448 TGTKNDIALLRLEKS 462
+D+ L++L +
Sbjct: 83 ----SDLVLMKLARP 93
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 134 bits (341), Expect = 5e-36
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 31/202 (15%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
+ LG N+ + +N + + ++ D+ DI L+RL +
Sbjct: 48 IYLGMHNL------KVLNKDAL-----RRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVR 96
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT--EDGRSSLELLAVQQKVFNSEECKAR 584
+ ++ P+ LP + GWG + + + C+A
Sbjct: 97 NSAHIAPLSLPSNPPSV----GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAA 152
Query: 585 YQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-CGTK 642
Y+ L ++ +C G G KD CKGDSGGPL + G++S G C
Sbjct: 153 YKGL-AATTLCAGILEGGKDTCKGDSGGPL----------ICNGQFQGILSVGGNPCAQP 201
Query: 643 SENPGVYTRMTYFLQWILDHLE 664
+ PG+YT++ + WI +
Sbjct: 202 RK-PGIYTKVFDYTDWIQSIIS 222
Score = 101 bits (255), Expect = 2e-24
Identities = 47/242 (19%), Positives = 76/242 (31%), Gaps = 71/242 (29%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
+IGG + ++A + Y+ C T N E + LG H+
Sbjct: 1 VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDRGNMRIYLGMHNLKVLN 59
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----------- 306
++ K + DI L+RL RP R +
Sbjct: 60 K---------DALRRFPKEKYFCLNTRNDT-IWDKDIMLIRLNRPVRNSAHIAPLSLPSN 109
Query: 307 GTHLMSCCY-----YLAYADNGIS----------IDYN----------SGQMCVGGNVG- 340
+ S C + + + +DY + +C G G
Sbjct: 110 PPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILEGG 169
Query: 341 KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILD 400
KD+C GDSGGPL G++S+G C PG+Y++ + WI
Sbjct: 170 KDTCKGDSGGPL----------ICNGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQS 219
Query: 401 HL 402
+
Sbjct: 220 II 221
Score = 87.6 bits (218), Expect = 1e-19
Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 48/167 (28%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLT--EKKIPSHILLGVNQLVYDRYLCTAIYER 731
++ P+ LP G + GWG + N + D +C A Y
Sbjct: 100 HIAPLSLPSNP----PSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAY-- 153
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
G++ LC A GKD+C GDSGGPL+
Sbjct: 154 KGLA------------ATTLC-AGILEG-----------------GKDTCKGDSGGPLI- 182
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GI+S+G + C R PG+YT+ + WI +
Sbjct: 183 ---------CNGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSI 220
Score = 86.4 bits (215), Expect = 3e-19
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWM 121
++ + + + C+A Y+ L ++ +C G G KD+C GDSGGPL
Sbjct: 126 TSPNATLPDVPHCANINILDYAVCQAAYKGL-AATTLCAGILEGGKDTCKGDSGGPL--- 181
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G++S G C + PG+YT++ + WI +
Sbjct: 182 -------ICNGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222
Score = 36.7 bits (86), Expect = 0.018
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
+ LG N + + ++ ++ T DI L+RL +
Sbjct: 48 IYLGMHN-LKVLN----------KDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRP 94
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 134 bits (340), Expect = 6e-36
Identities = 42/196 (21%), Positives = 63/196 (32%), Gaps = 38/196 (19%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N ++ E P Q V + Y NDI +L+L S
Sbjct: 53 VVLGAHN---------LSRRE---PTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSAT 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARY 585
N V LP N + GWG+ + + L + V + C+
Sbjct: 100 INANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCR--- 153
Query: 586 QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-CGTKS 643
S +C C GDSG PL + + G+ S+ C +
Sbjct: 154 -----RSNVCTLVRGRQAGVCFGDSGSPL----------VCNGLIHGIASFVRGGCASGL 198
Query: 644 ENPGVYTRMTYFLQWI 659
P + + F+ WI
Sbjct: 199 -YPDAFAPVAQFVNWI 213
Score = 112 bits (283), Expect = 2e-28
Identities = 39/238 (16%), Positives = 65/238 (27%), Gaps = 75/238 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC------------------ATNPEQISSVRLGEHD 252
I+GG A+ + P++ + C N + V LG H+
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVR-VVLGAHN 59
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT---- 308
+ P Q V ++ + N+ NDI +L+L +N
Sbjct: 60 ----------LSRREPTRQVFAVQRIF-ENGYDPV-NLLNDIVILQLNGSATINANVQVA 107
Query: 309 HLMSCCYYLAY------------ADNG-------------ISIDYNSGQMCVGG-NVGKD 342
L + L N ++ +C
Sbjct: 108 QLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAG 167
Query: 343 SCNGDSGGPL--TWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
C GDSG PL + G+ S C P ++ + F+ WI
Sbjct: 168 VCFGDSGSPLVCNG------------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
Score = 90.3 bits (225), Expect = 1e-20
Identities = 31/166 (18%), Positives = 43/166 (25%), Gaps = 59/166 (35%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYERN 732
VQ LP N G + GWGL + + +L +N V
Sbjct: 103 NVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASVLQELNVTVVT----------- 149
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM- 790
LC + +C C GDSG PL+
Sbjct: 150 ---------SLC---------------------RRSNVCTLVRGRQAGVCFGDSGSPLVC 179
Query: 791 -WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ GI S C P + + F+ WI
Sbjct: 180 NG------------LIHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
Score = 83.4 bits (207), Expect = 3e-18
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 83 SEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
+ C+ S +C C+GDSG PL + G+ S+
Sbjct: 149 TSLCR--------RSNVCTLVRGRQAGVCFGDSGSPLV----------CNGLIHGIASFV 190
Query: 142 PEDCGKTENPGVYTRMTYFLQWI 164
C P + + F+ WI
Sbjct: 191 RGGCASGLYPDAFAPVAQFVNWI 213
Score = 32.9 bits (76), Expect = 0.27
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY--TGTKNDIALLRLEKS 462
V LG N ++ + P Q V + Y NDI +L+L S
Sbjct: 53 VVLGAHN-LSRRE-----------PTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGS 97
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 135 bits (341), Expect = 9e-36
Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 36/212 (16%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG P Q +V +++ H+ + D NDIALL+L+
Sbjct: 60 VILGRTY-RVVPG-----------EEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSS 107
Query: 527 W----NGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG--RSSLELLAVQQKVFNSEE 580
+ V VCLP A + + ++G+G E S L +++ S
Sbjct: 108 RCAQESSVVRTVCLP--PADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSR 165
Query: 581 CKARYQELDP--SSQICVG-------GKVGKDACKGDSGGPLTWMGSFDSAILARNYLIG 631
C +++ + +C G DAC+GDSGGPL + R L+G
Sbjct: 166 CTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLND------GRMTLVG 219
Query: 632 LVSYGPTCGTKSENPGVYTRMTYFLQWILDHL 663
++S+G CG K + PGVYT++T +L WI D++
Sbjct: 220 IISWGLGCGQK-DVPGVYTKVTNYLDWIRDNM 250
Score = 90.1 bits (224), Expect = 3e-20
Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 36/168 (21%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKK--IPSHILLGVNQLVYDRYLCTAIYE 730
V+ VCLP D + + ++G+G E S L + +Y CT+ +
Sbjct: 115 VVRTVCLPPAD---LQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHL 171
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
N V D LC A R+G D+C GDSGGPL+
Sbjct: 172 LNRT-----------VTDNMLC-AGDTRSGGPQAN-----------LHDACQGDSGGPLV 208
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ R L+GI+S G CG +PGVYT+ + +L WI
Sbjct: 209 CLND------GRMTLVGIISWGLG-CGQKDVPGVYTKVTNYLDWIRDN 249
Score = 78.9 bits (195), Expect = 2e-16
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDP--SSQICVG-------GKVGKDSCYGD 113
S L +++ S +C +++ + +C G D+C GD
Sbjct: 143 EALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGD 202
Query: 114 SGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHL 168
SGGPL R L+G++S+G CG+ + PGVYT++T +L WI D++
Sbjct: 203 SGGPLV------CLNDGRMTLVGIISWG-LGCGQKDVPGVYTKVTNYLDWIRDNM 250
Score = 76.6 bits (189), Expect = 1e-15
Identities = 51/269 (18%), Positives = 74/269 (27%), Gaps = 96/269 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP----------------------HC---ATNPEQISS 245
I GG A + S PW A I HC P + +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHL-T 59
Query: 246 VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL 305
V LG Q V K I H+ F + NDIALL+L+
Sbjct: 60 VILGRTYRVVPG----------EEEQKFEVEKYIVHKEFDDDTY-DNDIALLQLKSDSSR 108
Query: 306 NGT---HLMSCCYYLAYADNGISIDYNSGQMCV---------GGN-------------VG 340
+ + C L A + C
Sbjct: 109 CAQESSVVRTVC--LPPA----DLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYP 162
Query: 341 KDSCN----------------GDSGGPLTWMGSFDS-----------AISARTYLIGLVS 373
C GD+ D+ R L+G++S
Sbjct: 163 SSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIIS 222
Query: 374 LGPASCGVYEIPGVYSRTSYFLRWILDHL 402
G CG ++PGVY++ + +L WI D++
Sbjct: 223 WG-LGCGQKDVPGVYTKVTNYLDWIRDNM 250
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYT--GTKNDIALLRLEKSPD 464
V LG P Q +V +++ H+ + NDIALL+L+
Sbjct: 60 VILGRTY-RVVPG-----------EEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSS 107
Query: 465 HIVRLGE 471
+
Sbjct: 108 RCAQESS 114
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 133 bits (338), Expect = 1e-35
Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 29/201 (14%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
++LG + N E + ++ +G DI L+RL +
Sbjct: 51 IKLGMHSK------NIRNEDEQ-----IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVT 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ 586
++ ++ PV LP + + GWG + + C+ Y
Sbjct: 100 YSTHIAPVSLPSRSRGV----GSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYP 155
Query: 587 ELD-PSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-CGTKS 643
+ S +C G G +D C GDSGGPL + + G+V+ G CG
Sbjct: 156 WVPADSRTLCAGILKGGRDTCHGDSGGPL----------ICNGEMHGIVAGGSEPCGQHL 205
Query: 644 ENPGVYTRMTYFLQWILDHLE 664
+ P VYT++ + WI +
Sbjct: 206 K-PAVYTKVFDYNNWIQSIIA 225
Score = 100 bits (251), Expect = 6e-24
Identities = 45/253 (17%), Positives = 73/253 (28%), Gaps = 90/253 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP------------------HCATNPEQISSVRLGEHD 252
++GG + P++ + S + HC + I ++LG H
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHC--DRRNIR-IKLGMHS 57
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
N + + K + DI L+RL RP +
Sbjct: 58 KNIRNE---------DEQIRVPRGKYFCLNTKFPN-GLDKDIMLIRLRRPVTYSTHIAPV 107
Query: 307 -----GTHLMSCCY--------------YL---------------AYADNGISIDYNSGQ 332
+ S C Y S
Sbjct: 108 SLPSRSRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPAD----SRT 163
Query: 333 MCVG-GNVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
+C G G+D+C+GDSGGPL + G+V+ G CG + P VY+
Sbjct: 164 LCAGILKGGRDTCHGDSGGPLICNG------------EMHGIVAGGSEPCGQHLKPAVYT 211
Query: 390 RTSYFLRWILDHL 402
+ + WI +
Sbjct: 212 KVFDYNNWIQSII 224
Score = 90.7 bits (226), Expect = 1e-20
Identities = 37/165 (22%), Positives = 53/165 (32%), Gaps = 50/165 (30%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERNG 733
++ PV LP G + GWG + N + C +Y
Sbjct: 103 HIAPVSLPSRS----RGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLY--PW 156
Query: 734 ISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM-- 790
+ D+ LC G G +D+C+GDSGGPL+
Sbjct: 157 VPADSR-----------------------------TLCAGILKGGRDTCHGDSGGPLICN 187
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ GIV+ G CG P VYT+ + WI
Sbjct: 188 G------------EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWI 220
Score = 83.8 bits (208), Expect = 3e-18
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLD-PSSQICVGGKVG-KDSCYGDSGGPLTW 120
+ + C+ Y + S +C G G +D+C+GDSGGPL
Sbjct: 127 KISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPL-- 184
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ G+V+ G E CG+ P VYT++ + WI +
Sbjct: 185 --------ICNGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225
Score = 32.2 bits (74), Expect = 0.52
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 15/59 (25%)
Query: 407 VRLGEQNV-ITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
++LG + I + D Q + ++ DI L+RL +
Sbjct: 51 IKLGMHSKNIRNEDEQ------------IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRP 97
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 133 bits (338), Expect = 2e-35
Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 44/214 (20%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-----------ND 515
+ LG N+ Q +V + S K +D
Sbjct: 49 IWLGRHNL------SKDEDTA------QFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHD 96
Query: 516 IALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTE--DGRSSLELLAVQ 572
+ LLRL + V + LP T+ + +GWG+ R S L V+
Sbjct: 97 LMLLRLAQPARITDAVKILDLP-----TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVE 151
Query: 573 QKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIG 631
++ ++E+C Y E +C C GDSGG L + G
Sbjct: 152 LRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGAL----------ICDGVFQG 201
Query: 632 LVSYGP-TCGTKSENPGVYTRMTYFLQWILDHLE 664
+ S+G C ++ V+T++ +WI + +E
Sbjct: 202 ITSWGYSECADFND-NFVFTKVMPHKKWIKETIE 234
Score = 101 bits (254), Expect = 2e-24
Identities = 45/258 (17%), Positives = 74/258 (28%), Gaps = 91/258 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP----------------HCATNPEQISSVRLGEHDAN 254
IIGG+ + S PW + + HC ++ Q + LG H+ +
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQ---IWLGRHNLS 57
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEP----------NMRNDIALLRLERPPR 304
D Q +V F ++ +D+ LLRL +P R
Sbjct: 58 KD----------EDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPAR 107
Query: 305 LN-----------GTHLMSCCY-----YLAYADNGIS----------IDYN--------- 329
+ L S CY ++ N S
Sbjct: 108 ITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEK 167
Query: 330 --SGQMCVGG-NVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEI 384
+C + C GDSGG L G+ S G + C +
Sbjct: 168 MTEFVLCATHRDDSGSICLGDSGGALICDG------------VFQGITSWGYSECADFND 215
Query: 385 PGVYSRTSYFLRWILDHL 402
V+++ +WI + +
Sbjct: 216 NFVFTKVMPHKKWIKETI 233
Score = 91.5 bits (228), Expect = 7e-21
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
ST R S L V+ ++ ++EKC Y + +C C GDSGG L
Sbjct: 137 STFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALI-- 194
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G+ S+G +C + V+T++ +WI + +E
Sbjct: 195 --------CDGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
Score = 87.6 bits (218), Expect = 2e-19
Identities = 33/171 (19%), Positives = 43/171 (25%), Gaps = 55/171 (32%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYE 730
V+ + LP + G +GWGL S L V + C Y
Sbjct: 111 AVKILDLP-----TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYP 165
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPL 789
+ LC C GDSGG L
Sbjct: 166 EK---MTEF-----------------------------VLCATHRDDSGSICLGDSGGAL 193
Query: 790 M--WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ GI S G S C V+T+ +WI T
Sbjct: 194 ICDG------------VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKET 232
Score = 33.3 bits (77), Expect = 0.20
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 407 VRLGEQNV-ITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTKNDIALLRLEKS 462
+ LG N+ + Q P D+ +++ Y +D+ LLRL +
Sbjct: 49 IWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQP 105
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 133 bits (337), Expect = 3e-35
Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 33/205 (16%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
++LG + + N E + +F + + DI L+RL+ +
Sbjct: 51 IKLGMHSK------KVPNEDEQ-----TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVK 99
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE--DGRSSLELLAVQQKVFNSEECKAR 584
+ ++ P LP + GWG +G V + E C+A
Sbjct: 100 NSKHIAPFSLPSSPPSV----GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAP 155
Query: 585 YQELDP---SSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TC 639
Y E + S +C G G KD CKGDSGGPL + G+ S+G C
Sbjct: 156 YPEFELPATSRTLCAGILEGGKDTCKGDSGGPL----------ICNGQFQGIASWGDDPC 205
Query: 640 GTKSENPGVYTRMTYFLQWILDHLE 664
+ P YT++ L WI + +
Sbjct: 206 AQPHK-PAAYTKVFDHLDWIENIIA 229
Score = 98.4 bits (246), Expect = 3e-23
Identities = 45/251 (17%), Positives = 69/251 (27%), Gaps = 90/251 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP------------------HCATNPEQISSVRLGEHD 252
IIGG + ++ + SR+ HC + + ++LG H
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHC--DRKNFR-IKLGMHS 57
Query: 253 ANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN------ 306
+ + K + DI L+RL+ P + +
Sbjct: 58 KKVPNE---------DEQTRVPKEKFFCLSSKNYT-LWDKDIMLIRLDSPVKNSKHIAPF 107
Query: 307 -----GTHLMSCCY----------------YL---------------AYADNGISIDYNS 330
+ S C Y + + S
Sbjct: 108 SLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPA--TS 165
Query: 331 GQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGV 387
+C G G GKD+C GDSGGPL G+ S G C P
Sbjct: 166 RTLCAGILEG--GKDTCKGDSGGPL----------ICNGQFQGIASWGDDPCAQPHKPAA 213
Query: 388 YSRTSYFLRWI 398
Y++ L WI
Sbjct: 214 YTKVFDHLDWI 224
Score = 87.2 bits (217), Expect = 2e-19
Identities = 37/165 (22%), Positives = 50/165 (30%), Gaps = 46/165 (27%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYER 731
++ P LP G + GWG + + VN + + +C A Y
Sbjct: 103 HIAPFSLPSSP----PSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPE 158
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM 790
+ + LC G G KD+C GDSGGPL+
Sbjct: 159 FELPATSR-----------------------------TLCAGILEGGKDTCKGDSGGPLI 189
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
GI S G C P YT+ L WI
Sbjct: 190 ----------CNGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWI 224
Score = 84.5 bits (210), Expect = 2e-18
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDP---SSQICVGGKVG-KDSCYGDSGGPL 118
S + V + E C+A Y + + S +C G G KD+C GDSGGPL
Sbjct: 129 SPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPL 188
Query: 119 TWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G+ S+G + C + P YT++ L WI + +
Sbjct: 189 ----------ICNGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229
Score = 34.9 bits (81), Expect = 0.071
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTK--NDIALLRLEKS 462
++LG + P+ + +F + T DI L+RL+
Sbjct: 51 IKLGMHS-KKVPN----------EDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSP 97
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 132 bits (334), Expect = 6e-35
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 43/214 (20%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENY-----------TDSGTKND 515
+ LG N+ + Q + V + H + D +D
Sbjct: 49 LWLGRHNL------FDDENTA------QFVHVSESFPHPGFNMSLLENHTRQADEDYSHD 96
Query: 516 IALLRLEKS-PEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT--EDGRSSLELLAVQ 572
+ LLRL + V V LP + +GWG E+ +L V
Sbjct: 97 LMLLRLTEPADTITDAVKVVELPTEEPEV----GSTCLASGWGSIEPENFSFPDDLQCVD 152
Query: 573 QKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIG 631
K+ ++ECK + + +CVG + GKD C GDSGGPL + L G
Sbjct: 153 LKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPL----------MCDGVLQG 202
Query: 632 LVSYGPT-CGTKSENPGVYTRMTYFLQWILDHLE 664
+ S+G CGT ++ P V R+ +++WI D +
Sbjct: 203 VTSWGYVPCGTPNK-PSVAVRVLSYVKWIEDTIA 235
Score = 100 bits (251), Expect = 6e-24
Identities = 51/256 (19%), Positives = 79/256 (30%), Gaps = 86/256 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
I+GG+ + S PW A + + T C + + + LG H+ D
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDNYQLWLGRHNLFDD- 59
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHF----------SGEPNMRNDIALLRLERP-PRLN 306
Q + V + H F + + +D+ LLRL P +
Sbjct: 60 ---------ENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTIT 110
Query: 307 -----------GTHLMSCCY-----YLAYADNGIS----------IDYN----------- 329
+ S C + + + +
Sbjct: 111 DAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVT 170
Query: 330 SGQMCVGG-NVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPG 386
+CVG GKD+C GDSGGPL L G+ S G CG P
Sbjct: 171 DFMLCVGHLEGGKDTCVGDSGGPLMCDG------------VLQGVTSWGYVPCGTPNKPS 218
Query: 387 VYSRTSYFLRWILDHL 402
V R +++WI D +
Sbjct: 219 VAVRVLSYVKWIEDTI 234
Score = 91.5 bits (228), Expect = 7e-21
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
E+ +L V K+ +++CK + + +CVG + GKD+C GDSGGPL
Sbjct: 138 EPENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPL--- 194
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L G+ S+G CG P V R+ +++WI D +
Sbjct: 195 -------MCDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235
Score = 89.2 bits (222), Expect = 5e-20
Identities = 39/167 (23%), Positives = 54/167 (32%), Gaps = 53/167 (31%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLT--EKKIPSHILLGVNQLVYDRYLCTAIYER 731
V+ V LP + G + +GWG E L V+ + C + +
Sbjct: 112 AVKVVELPTEE----PEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQ 167
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
+ LCVG + GKD+C GDSGGPLM
Sbjct: 168 K---VTDF-----------------------------MLCVGHLEGGKDTCVGDSGGPLM 195
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L G+ S G CG P V R +++WI
Sbjct: 196 CDG------------VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWI 230
Score = 33.0 bits (76), Expect = 0.30
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 25/69 (36%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENY-------------TGTKND 453
+ LG N + D + Q + V + H + +D
Sbjct: 49 LWLGRHN-LFDDE-----------NTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHD 96
Query: 454 IALLRLEKS 462
+ LLRL +
Sbjct: 97 LMLLRLTEP 105
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 132 bits (334), Expect = 7e-35
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 34/220 (15%)
Query: 458 RLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKND 515
K D+IV LG +V + H++Y+ ND
Sbjct: 50 DYPKKEDYIVYLGRSR------------LNSNTQGEMKFEVENLILHKDYSADTLAHHND 97
Query: 516 IALLRLEKSPEW----NGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG--RSSLELL 569
IALL++ + + + LP + + + G+G +L
Sbjct: 98 IALLKIRSKEGRCAQPSRTIQTISLP--SMYNDPQFGTSCEITGFGKENSTDYLYPEQLK 155
Query: 570 AVQQKVFNSEECKARYQ---ELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILA 625
K+ + EC+ + E+ +C D+C+GDSGGPL
Sbjct: 156 MTVVKLISHRECQQPHYYGSEVTTK-MLCAADPQWKTDSCQGDSGGPLVCSLQ------G 208
Query: 626 RNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLED 665
R L G+VS+G C K PGVYTR+++FL WI H ++
Sbjct: 209 RMTLTGIVSWGRGCALKD-KPGVYTRVSHFLPWIRSHTKE 247
Score = 86.9 bits (216), Expect = 3e-19
Identities = 39/169 (23%), Positives = 53/169 (31%), Gaps = 44/169 (26%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKK--IPSHILLGVNQLVYDRYLCTAIYE 730
+Q + LP + G + G+G + L + C +
Sbjct: 116 TIQTISLPSMY---NDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY 172
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPL 789
+ + LC DSC GDSGGPL
Sbjct: 173 YGS--------------------EVTTKM----------LCAADPQWKTDSCQGDSGGPL 202
Query: 790 MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ R L GIVS G C + PGVYTR S+FL WI +
Sbjct: 203 VCSL------QGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 80.4 bits (199), Expect = 6e-17
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDP--SSQICVGGKVG-KDSCYGDSGGPLT 119
++ D +L K+ + +C+ + + +C DSC GDSGGPL
Sbjct: 144 NSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 203
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
++ R L G+VS+G C + PGVYTR+++FL WI H ++
Sbjct: 204 ------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 65.7 bits (161), Expect = 5e-12
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 330 SGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVY 388
+ +C DSC GDSGGPL ++ R L G+VS G C + + PGVY
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLV------CSLQGRMTLTGIVSWG-RGCALKDKPGVY 231
Query: 389 SRTSYFLRWILDH 401
+R S+FL WI H
Sbjct: 232 TRVSHFLPWIRSH 244
Score = 63.8 bits (156), Expect = 2e-11
Identities = 26/118 (22%), Positives = 35/118 (29%), Gaps = 36/118 (30%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP---------------------HC---ATNPEQISSV 246
IIGG + + PW A I HC E V
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDY-IV 59
Query: 247 RLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE-PNMRNDIALLRLERPP 303
LG NS+ V +I H+ +S + NDIALL++
Sbjct: 60 YLGRSRLNSNT----------QGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKE 107
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 25/89 (28%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
W++ +D+ V LG +V + H++
Sbjct: 39 CWVISATHCFIDYPKKEDYIVYLGRSR------------LNSNTQGEMKFEVENLILHKD 86
Query: 447 YT----GTKNDIALLRLEKSPDHIVRLGE 471
Y+ NDIALL++ +
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSR 115
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 131 bits (331), Expect = 1e-34
Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 44/219 (20%)
Query: 462 SPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-------- 513
S ++ V LG N+ Q V Q H +Y
Sbjct: 42 SNNYQVLLGRNNL------FKDEPFA------QRRLVRQSFRHPDYIPLIVTNDTEQPVH 89
Query: 514 ---NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTEDGRSSL--E 567
ND+ LL L + + G V + LP T+ + + +GWG T + +
Sbjct: 90 DHSNDLMLLHLSEPADITGGVKVIDLP-----TKEPKVGSTCLASGWGSTNPSEMVVSHD 144
Query: 568 LLAVQQKVFNSEECKARYQELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILAR 626
L V + ++E+C Y++ +C G + GKD C GDSGGPL +
Sbjct: 145 LQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPL----------ICD 194
Query: 627 NYLIGLVSYGP-TCGTKSENPGVYTRMTYFLQWILDHLE 664
L G+ S G C P +Y ++ F WI ++
Sbjct: 195 GVLQGITSGGATPCAKPKT-PAIYAKLIKFTSWIKKVMK 232
Score = 96.5 bits (241), Expect = 1e-22
Identities = 52/264 (19%), Positives = 79/264 (29%), Gaps = 99/264 (37%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR--------TP-------HCATNPEQISSVRLGEHDANS 255
I+GGY + S PW + + P HC +N Q V LG ++
Sbjct: 1 IVGGYKCEKNSQPWQVAV-INEYLCGGVLIDPSWVITAAHCYSNNYQ---VLLGRNNLFK 56
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSG----------EPNMRNDIALLRLERPPRL 305
D P Q V + H + + ND+ LL L P +
Sbjct: 57 D----------EPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADI 106
Query: 306 N---------------GTHLMSCCY-----YLAYADNGIS----------IDYN------ 329
G+ C ++ +S +
Sbjct: 107 TGGVKVIDLPTKEPKVGST----CLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETY 162
Query: 330 -----SGQMCVGG-NVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGV 381
+C G GKD+C GDSGGPL L G+ S G C
Sbjct: 163 KDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG------------VLQGITSGGATPCAK 210
Query: 382 YEIPGVYSRTSYFLRWILDHLDDH 405
+ P +Y++ F WI + ++
Sbjct: 211 PKTPAIYAKLIKFTSWIKKVMKEN 234
Score = 90.3 bits (225), Expect = 2e-20
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGG-KVGKDSCYGDSGGPLTWM 121
+ + S +L V + ++EKC Y+ +C G + GKD+C GDSGGPL
Sbjct: 135 NPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLI-- 192
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L G+ S G C K + P +Y ++ F WI ++
Sbjct: 193 --------CDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232
Score = 90.0 bits (224), Expect = 3e-20
Identities = 41/170 (24%), Positives = 58/170 (34%), Gaps = 53/170 (31%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYER 731
V+ + LP + G + +GWG T + + SH L VN + C Y+
Sbjct: 109 GVKVIDLPTKE----PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD 164
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
N + LC G + GKD+C GDSGGPL+
Sbjct: 165 N---VTDV-----------------------------MLCAGEMEGGKDTCAGDSGGPLI 192
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
L GI S G + C + P +Y + F WI
Sbjct: 193 CDG------------VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKV 230
Score = 33.3 bits (77), Expect = 0.20
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 407 VRLGEQNV-ITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTKNDIALLRLEK 461
V LG N+ +P Q + P ++ T + ND+ LL L +
Sbjct: 47 VLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSE 102
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 131 bits (331), Expect = 1e-34
Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 44/214 (20%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENY-----------TDSGTKND 515
V LG+ N + Q V + + H ++ + ND
Sbjct: 52 VWLGKNNF------LEDEPSD------QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSND 99
Query: 516 IALLRLEKSPEWNGYVHPVCLPYGNAMTRNFE-NENTIVAGWGVTE--DGRSSLELLAVQ 572
+ LLRL K + V P+ LP T + + +GWG T + +L V
Sbjct: 100 LMLLRLSKPADITDVVKPITLP-----TEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVN 154
Query: 573 QKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIG 631
K+ +E+C ++ + +C G G C+ DSGGPL + L G
Sbjct: 155 LKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPL----------ICDGILQG 204
Query: 632 LVSYGPT-CGTKSENPGVYTRMTYFLQWILDHLE 664
+ S+GP CG +E P VYT++ F WI + +
Sbjct: 205 ITSWGPEPCGEPTE-PSVYTKLIKFSSWIRETMA 237
Score = 104 bits (261), Expect = 3e-25
Identities = 49/263 (18%), Positives = 71/263 (26%), Gaps = 93/263 (35%)
Query: 210 RIIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSD 256
+ V S PW + C + V LG+++ D
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLED 62
Query: 257 PDCSPDHRQCAPPVQDIRVVKVISHEHFS----------GEPNMRNDIALLRLERPPRLN 306
P Q V K I H F+ E + ND+ LLRL +P +
Sbjct: 63 ----------EPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADIT 112
Query: 307 ---------------GTHLMSCCY-----YLAYADNGIS----------IDYN------- 329
G+ C +
Sbjct: 113 DVVKPITLPTEEPKLGST----CLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHE 168
Query: 330 ----SGQMCVGGNVG-KDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVY 382
+C G G +C DSGGPL L G+ S GP CG
Sbjct: 169 MKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG------------ILQGITSWGPEPCGEP 216
Query: 383 EIPGVYSRTSYFLRWILDHLDDH 405
P VY++ F WI + + ++
Sbjct: 217 TEPSVYTKLIKFSSWIRETMANN 239
Score = 90.0 bits (224), Expect = 2e-20
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 76 VQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYL 134
V K+ +E C ++ + +C G G +C DSGGPL L
Sbjct: 153 VNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPL----------ICDGIL 202
Query: 135 IGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G+ S+GPE CG+ P VYT++ F WI + +
Sbjct: 203 QGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237
Score = 87.7 bits (218), Expect = 2e-19
Identities = 42/171 (24%), Positives = 53/171 (30%), Gaps = 55/171 (32%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYE 730
V+P+ LP + G + +GWG T K L VN + C +E
Sbjct: 114 VVKPITLP-----TEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHE 168
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPL 789
+ LC G G +C DSGGPL
Sbjct: 169 MK---VTDA-----------------------------MLCAGEMDGGSYTCEHDSGGPL 196
Query: 790 M--WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ L GI S GP CG P VYT+ F WI T
Sbjct: 197 ICDG------------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET 235
Score = 33.3 bits (77), Expect = 0.24
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 407 VRLGEQNV-ITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTKNDIALLRLEK 461
V LG+ N +P Q+ K P ++ ++ T + ND+ LLRL K
Sbjct: 52 VWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSK 107
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 132 bits (334), Expect = 2e-34
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDS--GTKNDIALLRL 521
D+IV LG +N + +V + H++Y+ NDIALL++
Sbjct: 79 DYIVYLGRSR---------LNSNT---QGEMKFEVENLILHKDYSADTLAHHNDIALLKI 126
Query: 522 EKSPEW----NGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDG--RSSLELLAVQQKV 575
+ + +CLP + + + G+G +L K+
Sbjct: 127 RSKEGRCAQPSRTIQTICLP--SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKL 184
Query: 576 FNSEECKARYQELDP--SSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGL 632
+ EC+ + + +C D+C+GDSGGPL R L G+
Sbjct: 185 ISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ------GRMTLTGI 238
Query: 633 VSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDE 666
VS+G C K PGVYTR+++FL WI H ++E
Sbjct: 239 VSWGRGCALKD-KPGVYTRVSHFLPWIRSHTKEE 271
Score = 107 bits (269), Expect = 5e-26
Identities = 63/281 (22%), Positives = 84/281 (29%), Gaps = 100/281 (35%)
Query: 203 CG---LASEQRIIGGYVAKLGSIPWIARIAYSRTP---------------------HC-- 236
CG L +IIGG + + PW A I HC
Sbjct: 13 CGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 72
Query: 237 -ATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE-PNMRNDI 294
E V LG NS+ V +I H+ +S + NDI
Sbjct: 73 DYPKKEDY-IVYLGRSRLNSNT----------QGEMKFEVENLILHKDYSADTLAHHNDI 121
Query: 295 ALLRLERPPRL---------------------NGTHLMSCCY-----YLAYADNGIS--- 325
ALL++ GT C D
Sbjct: 122 ALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTS----CEITGFGKENSTDYLYPEQL 177
Query: 326 -------IDYN-------------SGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISA 364
I + + +C DSC GDSGGPL ++
Sbjct: 178 KMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV------CSLQG 231
Query: 365 RTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
R L G+VS G C + + PGVY+R S+FL WI H +
Sbjct: 232 RMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSHTKEE 271
Score = 87.4 bits (217), Expect = 4e-19
Identities = 40/169 (23%), Positives = 54/169 (31%), Gaps = 44/169 (26%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKK--IPSHILLGVNQLVYDRYLCTAIYE 730
+Q +CLP + G + G+G + L + C +
Sbjct: 139 TIQTICLPSMY---NDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY 195
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPL 789
+ + LC DSC GDSGGPL
Sbjct: 196 YGS--------------------EVTTKM----------LCAADPQWKTDSCQGDSGGPL 225
Query: 790 MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ R L GIVS G C + PGVYTR S+FL WI +
Sbjct: 226 VCSL------QGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSH 267
Score = 80.4 bits (199), Expect = 1e-16
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDP--SSQICVGGKVG-KDSCYGDSGGPLT 119
++ D +L K+ + +C+ + + +C DSC GDSGGPL
Sbjct: 167 NSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLV 226
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLEDE 171
++ R L G+VS+G C + PGVYTR+++FL WI H ++E
Sbjct: 227 ------CSLQGRMTLTGIVSWG-RGCALKDKPGVYTRVSHFLPWIRSHTKEE 271
Score = 40.0 bits (94), Expect = 0.002
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 25/89 (28%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
W++ +D+ V LG +V + H++
Sbjct: 62 CWVISATHCFIDYPKKEDYIVYLGRSR------------LNSNTQGEMKFEVENLILHKD 109
Query: 447 YT----GTKNDIALLRLEKSPDHIVRLGE 471
Y+ NDIALL++ +
Sbjct: 110 YSADTLAHHNDIALLKIRSKEGRCAQPSR 138
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 130 bits (330), Expect = 3e-34
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 31/209 (14%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-NDIALLRLE 522
V LG+ N Q + +++ + Y+ +D+ L+RL+
Sbjct: 50 SVSVVLGQHF---------FNRTT---DVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLK 97
Query: 523 KSPEW----NGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE--DGRSSLELLAVQQKVF 576
K + + +V P+CLP + +AGWG + S L +
Sbjct: 98 KKGDRCATRSQFVQPICLP--EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLV 155
Query: 577 NSEECKARYQELDP--SSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLV 633
+C + + +C G DAC+GDSGGPL + YL G++
Sbjct: 156 ADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKN------GVAYLYGII 209
Query: 634 SYGPTCGTKSENPGVYTRMTYFLQWILDH 662
S+G CG PGVYTR+ ++ WI D
Sbjct: 210 SWGDGCGRLH-KPGVYTRVANYVDWINDR 237
Score = 103 bits (258), Expect = 9e-25
Identities = 58/262 (22%), Positives = 84/262 (32%), Gaps = 96/262 (36%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-------------------ATNPEQISSVRLGEH 251
IIGG + GS PW+A I Y C + + +S V LG+H
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVS-VVLGQH 58
Query: 252 DANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRL------ 305
N Q + K I + +S +D+ L+RL++
Sbjct: 59 FFNRT----------TDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQ 108
Query: 306 ---------------NGTHLMSCCY-----YLAYADNGIS----------ID-------- 327
G C +L +G S +
Sbjct: 109 FVQPICLPEPGSTFPAGHK----CQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPE 164
Query: 328 -YN----SGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASC 379
Y +C G D+C GDSGGPL + YL G++S G C
Sbjct: 165 VYGADISPNMLCAGYFDC--KSDACQGDSGGPLA------CEKNGVAYLYGIISWG-DGC 215
Query: 380 GVYEIPGVYSRTSYFLRWILDH 401
G PGVY+R + ++ WI D
Sbjct: 216 GRLHKPGVYTRVANYVDWINDR 237
Score = 84.6 bits (210), Expect = 2e-18
Identities = 45/168 (26%), Positives = 62/168 (36%), Gaps = 42/168 (25%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKKIP--SHILLGVNQLVYDRYLCTAIYE 730
+VQP+CLP F G +AGWG ++ + S L + + C++
Sbjct: 109 FVQPICLPEPG---STFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ LC A Y D+C GDSGGPL
Sbjct: 166 YGAD-----------ISPNMLC-AGYFDC-----------------KSDACQGDSGGPLA 196
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ YL GI+S G CG L PGVYTR + ++ WI
Sbjct: 197 CEK------NGVAYLYGIISWGDG-CGRLHKPGVYTRVANYVDWINDR 237
Score = 76.9 bits (190), Expect = 1e-15
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 69 PSLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFD 125
S L + KC + Y + +C G D+C GDSGGPL
Sbjct: 143 YSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLA------ 196
Query: 126 SAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
+ YL G++S+G + CG+ PGVYTR+ ++ WI D
Sbjct: 197 CEKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWINDR 237
Score = 43.8 bits (104), Expect = 9e-05
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 24/88 (27%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
W++ D V LG+ Q + +++ +
Sbjct: 33 CWVVSAAHCFSHSPPRDSVSVVLGQHF-FNRTT-----------DVTQTFGIEKYIPYTL 80
Query: 447 YTGTK---NDIALLRLEKSPDHIVRLGE 471
Y+ +D+ L+RL+K D +
Sbjct: 81 YSVFNPSDHDLVLIRLKKKGDRCATRSQ 108
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 129 bits (327), Expect = 3e-34
Identities = 45/196 (22%), Positives = 67/196 (34%), Gaps = 38/196 (19%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPE 526
V LG N + E P Q V Q + NY NDI L++L
Sbjct: 56 VVLGAHN---------VRTQE---PTQQHFSVAQVFLN-NYDAENKLNDILLIQLSSPAN 102
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARY 585
+ V V LP + + + GWG + L + V + C+
Sbjct: 103 LSASVATVQLPQQDQPVPH--GTQCLAMGWGRVGAHDPPAQVLQELNVTVV-TFFCR--- 156
Query: 586 QELDPSSQICVGG-KVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT-CGTKS 643
IC + C GDSGGPL + + G+ S+ C T+
Sbjct: 157 -----PHNICTFVPRRKAGICFGDSGGPL----------ICDGIIQGIDSFVIWGCATR- 200
Query: 644 ENPGVYTRMTYFLQWI 659
P +TR+ ++ WI
Sbjct: 201 LFPDFFTRVALYVDWI 216
Score = 113 bits (284), Expect = 2e-28
Identities = 45/240 (18%), Positives = 76/240 (31%), Gaps = 76/240 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP-------------------HCATNPEQIS-SVRLGE 250
I+GG+ A+ S P++A + P HC + Q +V LG
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGT-- 308
H+ + P Q V +V + + + N NDI L++L P L+ +
Sbjct: 61 HNVRTQ----------EPTQQHFSVAQVFLNNYDA--ENKLNDILLIQLSSPANLSASVA 108
Query: 309 --HLMSCCYYLA-------------YADNGIS----------IDY--NSGQMCVGG-NVG 340
L + A + + + + +C
Sbjct: 109 TVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRK 168
Query: 341 KDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWI 398
C GDSGGPL + G+ S C P ++R + ++ WI
Sbjct: 169 AGICFGDSGGPLICDG------------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWI 216
Score = 88.0 bits (219), Expect = 8e-20
Identities = 31/167 (18%), Positives = 45/167 (26%), Gaps = 61/167 (36%)
Query: 674 YVQPVCLP-YGDGLKYNFEGKDTIVAGWGLT-EKKIPSHILLGVNQLVYDRYLCTAIYER 731
V V LP + G + GWG P+ +L +N V +
Sbjct: 106 SVATVQLPQQDQPVP---HGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFF-------- 154
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGG-KVGKDSCNGDSGGPLM 790
C +C + C GDSGGPL+
Sbjct: 155 --------------------C-------------RPHNICTFVPRRKAGICFGDSGGPLI 181
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ GI S C P +TR + ++ WI
Sbjct: 182 CDG------------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWI 216
Score = 81.4 bits (202), Expect = 2e-17
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 96 SSQICVGG-KVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVY 154
IC + C+GDSGGPL + G+ S+ C P +
Sbjct: 157 PHNICTFVPRRKAGICFGDSGGPLI----------CDGIIQGIDSFVIWGCATRLFPDFF 206
Query: 155 TRMTYFLQWI 164
TR+ ++ WI
Sbjct: 207 TRVALYVDWI 216
Score = 34.4 bits (80), Expect = 0.093
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHE-NYTGTKNDIALLRLEKS 462
V LG N + + P Q V Q + + NDI L++L
Sbjct: 56 VVLGAHN-VRTQE-----------PTQQHFSVAQVFLNNYDAENKLNDILLIQLSSP 100
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 134 bits (338), Expect = 3e-34
Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 486 HEVCAPPVQDIKVIQFLTHENYTDSGTK------NDIALLRLEKSPEWNGYVHPVCLPYG 539
+P + V + H Y NDIAL+ L Y+ PVCLP
Sbjct: 177 VAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLP-- 234
Query: 540 NAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELD--PSSQICV 596
A + + V GWG T G+ + L + + +++ C + C
Sbjct: 235 AAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCA 294
Query: 597 GGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYF 655
G G DAC+GDSGGP + + R L G+VS+G C ++ PGVYT+++ F
Sbjct: 295 GYPEGGIDACQGDSGGPF--VCEDSISRTPRWRLCGIVSWGTGCA-LAQKPGVYTKVSDF 351
Query: 656 LQWILDHLE 664
+WI ++
Sbjct: 352 REWIFQAIK 360
Score = 107 bits (269), Expect = 3e-25
Identities = 60/274 (21%), Positives = 80/274 (29%), Gaps = 90/274 (32%)
Query: 203 CGL--ASEQRIIGGYVAKLGSIPWIARIAYSRTP----------------HCATNPEQIS 244
CG RI+GG LG PW + Y HC ++
Sbjct: 108 CGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVL 167
Query: 245 S---VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEP-----NMRNDIAL 296
S V G Q +P + V V+ H + NDIAL
Sbjct: 168 SRWRVFAGAVA------------QASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIAL 215
Query: 297 LRLERPPRLNGT--------------HLMSC----------------------------- 313
+ L P L C
Sbjct: 216 VHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISND 275
Query: 314 -CYYLAYADNGISIDYNSGQMCVGGNVG-KDSCNGDSGGPLTWMGSFDSAISARTYLIGL 371
C + N I C G G D+C GDSGGP + + + R L G+
Sbjct: 276 VCNGADFYGNQIK----PKMFCAGYPEGGIDACQGDSGGPF--VCEDSISRTPRWRLCGI 329
Query: 372 VSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
VS G C + + PGVY++ S F WI + H
Sbjct: 330 VSWG-TGCALAQKPGVYTKVSDFREWIFQAIKTH 362
Score = 89.4 bits (222), Expect = 3e-19
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 37/167 (22%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
Y+QPVCLP GK V GWG T+ + +L + +C
Sbjct: 227 YIQPVCLPAAG---QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFY 283
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
+ + C A Y G D+C GDSGGP +
Sbjct: 284 GNQ-----------IKPKMFC-AGYPEG-----------------GIDACQGDSGGPFVC 314
Query: 792 MGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
S R + R L GIVS G C + + PGVYT+ S F WI
Sbjct: 315 EDSISR--TPRWRLCGIVSWGTG-CALAQKPGVYTKVSDFREWIFQA 358
Score = 80.6 bits (199), Expect = 3e-16
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 65 EDKRPSLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWM 121
+ + L + + +++ C Y C G G D+C GDSGGP +
Sbjct: 256 YYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPF--V 313
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ + R L G+VS+G C + PGVYT+++ F +WI ++
Sbjct: 314 CEDSISRTPRWRLCGIVSWG-TGCALAQKPGVYTKVSDFREWIFQAIK 360
Score = 35.9 bits (83), Expect = 0.044
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 426 HKVCAPPVQDIKVIQFLTHENYTGTK--------NDIALLRLEKS 462
+P + V + H Y + NDIAL+ L
Sbjct: 177 VAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSP 221
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 129 bits (327), Expect = 4e-34
Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 41/213 (19%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK--NDIALLRL 521
V LGE N +N +E Q + V H + DIALLRL
Sbjct: 52 TWRVVLGEHN---------LNTNE---GKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRL 99
Query: 522 EKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEE 580
N V LP + N + GWG T G S L +
Sbjct: 100 NTQASLNSAVQLAALP--PSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHAT 157
Query: 581 CKAR--YQELDPSSQICVGGKVGKDACKGDSGGPL------TWMGSFDSAILARNYLIGL 632
C + + ++ +C GG C GDSGGPL ++ Y+ G+
Sbjct: 158 CSSSGWWGSTVKTTMVCAGGG-ANSGCNGDSGGPLNCQVNGSY------------YVHGV 204
Query: 633 VS--YGPTCGTKSENPGVYTRMTYFLQWILDHL 663
S C P V+TR++ ++ W+ +
Sbjct: 205 TSFVSSSGCNASK-KPTVFTRVSAYISWMNGIM 236
Score = 104 bits (263), Expect = 2e-25
Identities = 53/254 (20%), Positives = 83/254 (32%), Gaps = 80/254 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGE 250
++GG VA+ S PW + Y HC + V LGE
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWR-VVLGE 59
Query: 251 HDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE-PNMRNDIALLRLERPPRLNGTH 309
H+ N++ Q + V V H ++ + DIALLRL LN
Sbjct: 60 HNLNTNE----------GKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAV 109
Query: 310 LMSC-------------CY-----YLAYADNG-----------IS------IDYNSGQ-- 332
++ CY + + +
Sbjct: 110 QLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVK 169
Query: 333 ---MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS-CGVYEIPGVY 388
+C GG CNGDSGGPL ++ Y+ G+ S +S C + P V+
Sbjct: 170 TTMVCAGGG-ANSGCNGDSGGPLN------CQVNGSYYVHGVTSFVSSSGCNASKKPTVF 222
Query: 389 SRTSYFLRWILDHL 402
+R S ++ W+ +
Sbjct: 223 TRVSAYISWMNGIM 236
Score = 91.1 bits (227), Expect = 1e-20
Identities = 38/170 (22%), Positives = 52/170 (30%), Gaps = 47/170 (27%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
VQ LP + + GWG T P S L D C++
Sbjct: 108 AVQLAALPPSN---QILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWW 164
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM- 790
V +C G CNGDSGGPL
Sbjct: 165 GST-----------VKTTMVC--------------------AGGGANSGCNGDSGGPLNC 193
Query: 791 -WMGSFDRSISARTYLLGIVSLGPST-CGMLRIPGVYTRTSYFLRWILAT 838
GS+ Y+ G+ S S+ C + P V+TR S ++ W+
Sbjct: 194 QVNGSY--------YVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGI 235
Score = 74.5 bits (184), Expect = 5e-15
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 22/105 (20%)
Query: 73 LLAVQQKVFNSEKCKAR--YQKLDPSSQICVGGKVGKDSCYGDSGGPL------TWMGSF 124
L + C + + ++ +C GG C GDSGGPL ++
Sbjct: 145 LKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGG-ANSGCNGDSGGPLNCQVNGSY---- 199
Query: 125 DSAISARNYLIGLVSYGP-EDCGKTENPGVYTRMTYFLQWILDHL 168
Y+ G+ S+ C ++ P V+TR++ ++ W+ +
Sbjct: 200 --------YVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
Score = 37.2 bits (87), Expect = 0.013
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 22/77 (28%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
W++ D V LGE N + + Q + V H +
Sbjct: 38 GWVMTAAHCVDSARTWRVVLGEHN-LNTNE-----------GKEQIMTVNSVFIHSGWNS 85
Query: 450 T----KNDIALLRLEKS 462
DIALLRL
Sbjct: 86 DDVAGGYDIALLRLNTQ 102
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 129 bits (327), Expect = 5e-34
Identities = 50/215 (23%), Positives = 74/215 (34%), Gaps = 40/215 (18%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENY--TDSGTKNDIALLRL 521
+ V LGE + + G E V I H + NDIAL++L
Sbjct: 50 TYQVVLGEYDR------SVLEGSE----QVIPINAGDLFVHPLWNSNCVACGNDIALVKL 99
Query: 522 EKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT-EDGRSSLELLAVQQKVFNSEE 580
+S + V LP A ++GWG G +L + E
Sbjct: 100 SRSAQLGDKVQLANLP--PAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEH 157
Query: 581 CKARYQELD--PSSQICVGGKVGKDACKGDSGGPL-------TWMGSFDSAILARNYLIG 631
C + +C GG + C GDSGGPL +W + G
Sbjct: 158 CSQWDWWGITVKKTMVCAGGD-TRSGCNGDSGGPLNCPAADGSW------------QVHG 204
Query: 632 LVS--YGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
+ S C T P V+TR++ F+ WI + +
Sbjct: 205 VTSFVSAFGCNTIK-KPTVFTRVSAFIDWIDETIA 238
Score = 99.2 bits (248), Expect = 2e-23
Identities = 49/255 (19%), Positives = 75/255 (29%), Gaps = 85/255 (33%)
Query: 214 GYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQISSVRLGEHDA 253
G A S W + Y + HC + V LGE+D
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQ-VVLGEYDR 60
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHF-SGEPNMRNDIALLRLERPPRLNGT---- 308
+ + V I + H + S NDIAL++L R +L
Sbjct: 61 SVLEG--------SEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLA 112
Query: 309 ----------HLMSC------------------------------CYYLAYADNGISIDY 328
+ C C + +
Sbjct: 113 NLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVK--- 169
Query: 329 NSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS-CGVYEIPGV 387
+C GG+ + CNGDSGGPL + + G+ S A C + P V
Sbjct: 170 -KTMVCAGGD-TRSGCNGDSGGPLNCPAA-----DGSWQVHGVTSFVSAFGCNTIKKPTV 222
Query: 388 YSRTSYFLRWILDHL 402
++R S F+ WI + +
Sbjct: 223 FTRVSAFIDWIDETI 237
Score = 89.6 bits (223), Expect = 4e-20
Identities = 35/168 (20%), Positives = 49/168 (29%), Gaps = 42/168 (25%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIP-SHILLGVNQLVYDRYLCTAIYER 731
VQ LP ++GWG P L D C+
Sbjct: 108 KVQLANLPPAG---DILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWW 164
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMW 791
V +C A + + CNGDSGGPL
Sbjct: 165 GIT-----------VKKTMVC-AGGD-------------------TRSGCNGDSGGPLNC 193
Query: 792 MGSFDRSISARTYLLGIVSLGPST-CGMLRIPGVYTRTSYFLRWILAT 838
+ + G+ S + C ++ P V+TR S F+ WI T
Sbjct: 194 PAA-----DGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDET 236
Score = 76.9 bits (190), Expect = 7e-16
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 73 LLAVQQKVFNSEKCKARYQKLD--PSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISA 130
L + E C + +C GG + C GDSGGPL +
Sbjct: 145 LQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGD-TRSGCNGDSGGPLNCPAA-----DG 198
Query: 131 RNYLIGLVSYGP-EDCGKTENPGVYTRMTYFLQWILDHLE 169
+ G+ S+ C + P V+TR++ F+ WI + +
Sbjct: 199 SWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 238
Score = 34.9 bits (81), Expect = 0.065
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 20/77 (25%)
Query: 396 RWIL------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTG 449
W++ + V LGE + + V I H +
Sbjct: 36 DWVVTAGHCISTSRTYQVVLGEYDRSVLEG----------SEQVIPINAGDLFVHPLWNS 85
Query: 450 TK----NDIALLRLEKS 462
NDIAL++L +S
Sbjct: 86 NCVACGNDIALVKLSRS 102
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 129 bits (327), Expect = 5e-34
Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 44/219 (20%)
Query: 462 SPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENY-----------TDS 510
++ LG + + E Q +V H Y
Sbjct: 44 RNKSVILLGRHS---------LFHPE---DTGQVFQVSHSFPHPLYDMSLLKNRFLRPGD 91
Query: 511 GTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT-IVAGWGVT--EDGRSSLE 567
+ +D+ LLRL + E V + LP T+ T +GWG E+ + +
Sbjct: 92 DSSHDLMLLRLSEPAELTDAVKVMDLP-----TQEPALGTTCYASGWGSIEPEEFLTPKK 146
Query: 568 LLAVQQKVFNSEECKARYQELDPSSQICVG-GKVGKDACKGDSGGPLTWMGSFDSAILAR 626
L V V +++ C + + +C G GK C GDSGGPL +
Sbjct: 147 LQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPL----------VCN 196
Query: 627 NYLIGLVSYGPT-CGTKSENPGVYTRMTYFLQWILDHLE 664
L G+ S+G C P +YT++ ++ +WI D +
Sbjct: 197 GVLQGITSWGSEPCALPER-PSLYTKVVHYRKWIKDTIV 234
Score = 99.6 bits (249), Expect = 1e-23
Identities = 51/259 (19%), Positives = 78/259 (30%), Gaps = 93/259 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
I+GG+ + S PW +A C +P+ S + LG H
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSVILLGRHSLFHP- 59
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFS----------GEPNMRNDIALLRLERPPRLN- 306
Q +V H + + +D+ LLRL P L
Sbjct: 60 ---------EDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTD 110
Query: 307 --------------GTHLMSCCY-----YLAYADNGIS----------IDYN-------- 329
GT CY + + I +
Sbjct: 111 AVKVMDLPTQEPALGTT----CYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQ 166
Query: 330 ---SGQMCVG-GNVGKDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYE 383
+C G GK +C+GDSGGPL L G+ S G C + E
Sbjct: 167 KVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG------------VLQGITSWGSEPCALPE 214
Query: 384 IPGVYSRTSYFLRWILDHL 402
P +Y++ ++ +WI D +
Sbjct: 215 RPSLYTKVVHYRKWIKDTI 233
Score = 90.7 bits (226), Expect = 2e-20
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVG-GKVGKDSCYGDSGGPLTWM 121
E+ +L V V +++ C + + +C G GK +C GDSGGPL
Sbjct: 137 EPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPLV-- 194
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L G+ S+G E C E P +YT++ ++ +WI D +
Sbjct: 195 --------CNGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234
Score = 88.4 bits (220), Expect = 9e-20
Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 55/168 (32%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLT--EKKIPSHILLGVNQLVYDRYLCTAIYE 730
V+ + LP G +GWG E+ + L V+ V +C ++
Sbjct: 111 AVKVMDLP-----TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHP 165
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG-GKVGKDSCNGDSGGPL 789
+ + + LC G GK +C+GDSGGPL
Sbjct: 166 QK----------------------VTKF----------MLCAGRWTGGKSTCSGDSGGPL 193
Query: 790 M--WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ L GI S G C + P +YT+ ++ +WI
Sbjct: 194 VCNG------------VLQGITSWGSEPCALPERPSLYTKVVHYRKWI 229
Score = 33.0 bits (76), Expect = 0.30
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 403 DDHFVRLGEQNV-ITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTKNDIALLRLEK 461
+ + LG ++ + Q P+ D+ +++ + +D+ LLRL +
Sbjct: 45 NKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSE 104
Query: 462 S 462
Sbjct: 105 P 105
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 129 bits (326), Expect = 7e-34
Identities = 52/214 (24%), Positives = 76/214 (35%), Gaps = 44/214 (20%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENY-----------TDSGTKND 515
V LG+ + Q V + H + + +D
Sbjct: 49 VWLGKNKL------FQEEPSA------QHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDD 96
Query: 516 IALLRLEKSPEWNGYVHPVCLPYGNAMTRNFEN-ENTIVAGWGVTE--DGRSSLELLAVQ 572
+ LLRL K + V P+ LP T+ + + +GWG + +L V
Sbjct: 97 LMLLRLSKPADITDVVKPIALP-----TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVF 151
Query: 573 QKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIG 631
+ +E C Y + +C G G KD C+ DSGGPL + L G
Sbjct: 152 ITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPL----------ICDGILQG 201
Query: 632 LVSYGPT-CGTKSENPGVYTRMTYFLQWILDHLE 664
SYGP CG P +YT + F WI D +
Sbjct: 202 TTSYGPVPCGKPGV-PAIYTNLIKFNSWIKDTMM 234
Score = 99 bits (250), Expect = 8e-24
Identities = 49/255 (19%), Positives = 73/255 (28%), Gaps = 85/255 (33%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
++GG+ + S PW + Y + C + V LG++ +
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQE- 59
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFS----------GEPNMRNDIALLRLERPPRLNG 307
P Q V K H F+ + +D+ LLRL +P +
Sbjct: 60 ---------EPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITD 110
Query: 308 T-----------HLMSCCY-----YLAYADNGIS----------IDYN-----------S 330
S C + +
Sbjct: 111 VVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVTD 170
Query: 331 GQMCVGGNVG-KDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGV 387
+C G G KD+C DSGGPL L G S GP CG +P +
Sbjct: 171 VMLCAGEMGGGKDTCRDDSGGPLICDG------------ILQGTTSYGPVPCGKPGVPAI 218
Query: 388 YSRTSYFLRWILDHL 402
Y+ F WI D +
Sbjct: 219 YTNLIKFNSWIKDTM 233
Score = 87.6 bits (218), Expect = 1e-19
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISAR 131
L V + +E C Y + +C G G KD+C DSGGPL
Sbjct: 147 LQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPL----------ICD 196
Query: 132 NYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L G SYGP CGK P +YT + F WI D +
Sbjct: 197 GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234
Score = 87.6 bits (218), Expect = 1e-19
Identities = 39/167 (23%), Positives = 52/167 (31%), Gaps = 53/167 (31%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYE 730
V+P+ LP + G + +GWG + L V + C +Y
Sbjct: 111 VVKPIALP-----TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYL 165
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ V D LC GKD+C DSGGPL+
Sbjct: 166 QK-------------VTDVMLCAGEMGG------------------GKDTCRDDSGGPLI 194
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
L G S GP CG +P +YT F WI
Sbjct: 195 CDG------------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWI 229
Score = 34.1 bits (79), Expect = 0.12
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 396 RWILD--H--LDDHFVRLGEQNV-ITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGT 450
W+L H +D + V LG+ + +P Q+ K P ++ ++ T
Sbjct: 34 NWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADF 93
Query: 451 KNDIALLRLEKS 462
+D+ LLRL K
Sbjct: 94 SDDLMLLRLSKP 105
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 130 bits (329), Expect = 9e-34
Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 47/217 (21%)
Query: 464 DHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-NDIALLRLE 522
V LG+ N Q + +++ + Y+ +D+ L+RL+
Sbjct: 85 SVSVVLGQHF---------FNRTT---DVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLK 132
Query: 523 KSPEW----NGYVHPVCLPYGNAMTRNFENENTIVAGWGVTE--DGRSSLELLAVQQKVF 576
K + + +V P+CLP + +AGWG + S L +
Sbjct: 133 KKGDRCATRSQFVQPICLP--EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLV 190
Query: 577 NSEECKAR--YQELDPSSQICVG---GKVGKDACKGDSGGPL------TWMGSFDSAILA 625
+C + Y + +C G DAC+GDSGGPL
Sbjct: 191 ADHKCSSPEVYGADISPNMLCAGYFDC--KSDACQGDSGGPLACEKNGVA---------- 238
Query: 626 RNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDH 662
YL G++S+G CG PGVYTR+ ++ WI D
Sbjct: 239 --YLYGIISWGDGCGRLH-KPGVYTRVANYVDWINDR 272
Score = 109 bits (274), Expect = 1e-26
Identities = 63/281 (22%), Positives = 89/281 (31%), Gaps = 102/281 (36%)
Query: 198 PPKDKCGL------ASEQRIIGGYVAKLGSIPWIARIAYSRTPHCA-------------- 237
P + CG RIIGG + GS PW+A I Y CA
Sbjct: 17 PGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAH 75
Query: 238 -----TNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRN 292
+ +S V LG+H N Q + K I + +S +
Sbjct: 76 CFSHSPPRDSVS-VVLGQHFFNRT----------TDVTQTFGIEKYIPYTLYSVFNPSDH 124
Query: 293 DIALLRLERPPRL---------------------NGTHLMSCCY-----YLAYADNGIS- 325
D+ L+RL++ G C +L +G S
Sbjct: 125 DLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHK----CQIAGWGHLDENVSGYSS 180
Query: 326 ---------ID---------YN----SGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDS 360
+ Y +C G D+C GDSGGPL
Sbjct: 181 SLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDC--KSDACQGDSGGPLA------C 232
Query: 361 AISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH 401
+ YL G++S G CG PGVY+R + ++ WI D
Sbjct: 233 EKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWINDR 272
Score = 85.1 bits (211), Expect = 3e-18
Identities = 45/168 (26%), Positives = 62/168 (36%), Gaps = 42/168 (25%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKKIP--SHILLGVNQLVYDRYLCTAIYE 730
+VQP+CLP F G +AGWG ++ + S L + + C++
Sbjct: 144 FVQPICLPEPG---STFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 200
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLM 790
+ LC A Y D+C GDSGGPL
Sbjct: 201 YGAD-----------ISPNMLC-AGYFDC-----------------KSDACQGDSGGPLA 231
Query: 791 WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
+ YL GI+S G CG L PGVYTR + ++ WI
Sbjct: 232 ------CEKNGVAYLYGIISWGDG-CGRLHKPGVYTRVANYVDWINDR 272
Score = 77.7 bits (192), Expect = 9e-16
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 69 PSLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVG---GKVGKDSCYGDSGGPLTWMGS 123
S L + KC + Y + +C G D+C GDSGGPL
Sbjct: 178 YSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDC--KSDACQGDSGGPLA---- 231
Query: 124 FDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
+ YL G++S+G + CG+ PGVYTR+ ++ WI D
Sbjct: 232 --CEKNGVAYLYGIISWG-DGCGRLHKPGVYTRVANYVDWINDR 272
Score = 43.5 bits (103), Expect = 2e-04
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 24/88 (27%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
W++ D V LG+ Q + +++ +
Sbjct: 68 CWVVSAAHCFSHSPPRDSVSVVLGQHF------------FNRTTDVTQTFGIEKYIPYTL 115
Query: 447 YTGTK---NDIALLRLEKSPDHIVRLGE 471
Y+ +D+ L+RL+K D +
Sbjct: 116 YSVFNPSDHDLVLIRLKKKGDRCATRSQ 143
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 125 bits (317), Expect = 1e-32
Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 33/204 (16%)
Query: 467 VRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTK-NDIALLRLEKSP 525
++LG + + +N E Q + N + DI L++L+
Sbjct: 49 MKLGVHSK------KVLNEDE------QTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRV 96
Query: 526 EWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSL--ELLAVQQKVFNSEECKA 583
+ ++ P+ LP + GWG + + + + C+A
Sbjct: 97 SNSEHIVPLSLPSSPPSV----GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQA 152
Query: 584 RYQE-LDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGP-TCG 640
Y E L +C G G KD C GDSGGPL + G+VS+G CG
Sbjct: 153 GYPELLTEYRTLCAGILEGGKDTCGGDSGGPL----------ICNGQFQGIVSFGAHPCG 202
Query: 641 TKSENPGVYTRMTYFLQWILDHLE 664
+ PGVYT++ + WI +
Sbjct: 203 QGLK-PGVYTKVFDYNHWIQSIIA 225
Score = 102 bits (256), Expect = 1e-24
Identities = 46/253 (18%), Positives = 71/253 (28%), Gaps = 90/253 (35%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHC-AT--NPE----------QISSVRLGEHDANSDP 257
+IGG + + S C T N E ++LG H
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNTNFQMKLGVHSKKVLN 60
Query: 258 DCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN----------- 306
Q + + + + DI L++L+ +
Sbjct: 61 ----------EDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSS 110
Query: 307 ----GT--------------------------HLMS---C-CYYLAYADNGISIDYNSGQ 332
G+ +L+ C Y + +Y
Sbjct: 111 PPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGY-----PELLTEYR--T 163
Query: 333 MCVGGNVG-KDSCNGDSGGPLT--WMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYS 389
+C G G KD+C GDSGGPL G+VS G CG PGVY+
Sbjct: 164 LCAGILEGGKDTCGGDSGGPLICNG------------QFQGIVSFGAHPCGQGLKPGVYT 211
Query: 390 RTSYFLRWILDHL 402
+ + WI +
Sbjct: 212 KVFDYNHWIQSII 224
Score = 86.1 bits (214), Expect = 6e-19
Identities = 40/170 (23%), Positives = 54/170 (31%), Gaps = 52/170 (30%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLTE--KKIPSHILLGVNQLVYDRYLCTAIYER 731
++ P+ LP G + GWG K + + D +C A Y
Sbjct: 101 HIVPLSLPSSP----PSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGY-- 154
Query: 732 NGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG-KDSCNGDSGGPLM 790
+ + LC G G KD+C GDSGGPL+
Sbjct: 155 PELLTEYR-----------------------------TLCAGILEGGKDTCGGDSGGPLI 185
Query: 791 --WMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWILAT 838
GIVS G CG PGVYT+ + WI +
Sbjct: 186 CNG------------QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSI 223
Score = 84.1 bits (209), Expect = 2e-18
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 79 KVFNSEKCKARY-QKLDPSSQICVGGKVG-KDSCYGDSGGPLTWMGSFDSAISARNYLIG 136
+ + C+A Y + L +C G G KD+C GDSGGPL G
Sbjct: 143 NLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPL----------ICNGQFQG 192
Query: 137 LVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+VS+G CG+ PGVYT++ + WI +
Sbjct: 193 IVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225
Score = 30.6 bits (70), Expect = 1.9
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 15/58 (25%)
Query: 407 VRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTH---ENYTGTKNDIALLRLEK 461
++LG + + Q + +N DI L++L+
Sbjct: 49 MKLGVHS-KKVLN-----------EDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDS 94
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 131 bits (332), Expect = 3e-32
Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 27/208 (12%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLR 520
K+ + + + I + V + + HENY +NDIAL+
Sbjct: 368 KTHRYQIWTTVVDWIHPDL-----------KRIVIEYVDRIIFHENYNAGTYQNDIALIE 416
Query: 521 LEK----SPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVF 576
++K P C+P + N+ IV+GWG +D L + K+
Sbjct: 417 MKKDGNKKDCELPRSIPACVP--WSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEVKLI 474
Query: 577 NSEECKARYQE-LDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNYLIGLVS 634
++ C Y C G G DACKGDSGGPL M + + Y+ G+VS
Sbjct: 475 SN--CSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANN-----VTYVWGVVS 527
Query: 635 YGPTCGTKSENPGVYTRMTYFLQWILDH 662
+G CG K E PGVYT++ + WI H
Sbjct: 528 WGENCG-KPEFPGVYTKVANYFDWISYH 554
Score = 105 bits (262), Expect = 2e-23
Identities = 64/316 (20%), Positives = 97/316 (30%), Gaps = 107/316 (33%)
Query: 170 DEWILDHLEDEVNIPEVHPEQHKNWHLL--------------PPKDKCGL-----ASEQR 210
E EDEV + +L PK CG+ +R
Sbjct: 262 GEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSCGVKNRMHIRRKR 321
Query: 211 IIGGYVAKLGSIPWIARIAYSRTPHCA-----------------TNPEQISSVRLGEHDA 253
I+GG A+LG +PW I + C + + D
Sbjct: 322 IVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDW 381
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTH---- 309
+ V ++I HE+++ +NDIAL+ +++
Sbjct: 382 IHPDL---------KRIVIEYVDRIIFHENYN-AGTYQNDIALIEMKKDGNKKDCELPRS 431
Query: 310 -----------------------------------------LMSCCYYLAYADNGISIDY 328
L+S C Y +
Sbjct: 432 IPACVPWSPYLFQPNDTCIVSGWGREKDNERVFSLQWGEVKLISNCSKF-YGNRFYE--- 487
Query: 329 NSGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIP 385
C G G D+C GDSGGPL M + + TY+ G+VS G +CG E P
Sbjct: 488 -KEMECAGTYDG--SIDACKGDSGGPLVCMDA-----NNVTYVWGVVSWG-ENCGKPEFP 538
Query: 386 GVYSRTSYFLRWILDH 401
GVY++ + + WI H
Sbjct: 539 GVYTKVANYFDWISYH 554
Score = 87.7 bits (217), Expect = 5e-18
Identities = 43/178 (24%), Positives = 63/178 (35%), Gaps = 46/178 (25%)
Query: 662 HLEDEVNIPEV--HYVQPVCLPYGDGLKYNFE-GKDTIVAGWGLTEKKIPSHILLGVNQL 718
++ + N + P C+P+ Y F+ IV+GWG + L
Sbjct: 416 EMKKDGNKKDCELPRSIPACVPWSP---YLFQPNDTCIVSGWGREKDNERVFSLQWGEVK 472
Query: 719 VYDRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVG- 777
+ C+ Y K C G G
Sbjct: 473 LISN--CSKFYGNRFYE-------------------------------KEMECAGTYDGS 499
Query: 778 KDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
D+C GDSGGPL+ M + + TY+ G+VS G CG PGVYT+ + + WI
Sbjct: 500 IDACKGDSGGPLVCMDA-----NNVTYVWGVVSWG-ENCGKPEFPGVYTKVANYFDWI 551
Score = 77.3 bits (190), Expect = 9e-15
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARY-QKLDPSSQICVGGKVG-KDSCYGDSGGPLTW 120
+D L + K+ + C Y + C G G D+C GDSGGPL
Sbjct: 456 REKDNERVFSLQWGEVKLIS--NCSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVC 513
Query: 121 MGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDH 167
M + + Y+ G+VS+G E+CGK E PGVYT++ + WI H
Sbjct: 514 MDA-----NNVTYVWGVVSWG-ENCGKPEFPGVYTKVANYFDWISYH 554
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 129 bits (325), Expect = 1e-31
Identities = 37/229 (16%), Positives = 73/229 (31%), Gaps = 69/229 (30%)
Query: 494 QDIKVIQFLTHENYTDSGTK---------NDIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP
Sbjct: 279 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP--CTEGT 336
Query: 545 NFENENTIVAGWGVTEDG-------------RSSLELLAVQQKVFNSEE---CKARYQEL 588
++ +L + + N ++ C+ Q
Sbjct: 337 TRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYA 396
Query: 589 DPSSQ------------ICVG---GKVGKDACKGDSGGPL------TWMGSFDSAILARN 627
+ +C G + C+GDSGGPL +
Sbjct: 397 PGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRF------------ 444
Query: 628 YLIGLVSYGPTCG---------TKSENPGVYTRMTYFLQWILDHLEDEV 667
+G++S+G + + + L W+ + L+DE
Sbjct: 445 IQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDED 493
Score = 92.3 bits (229), Expect = 1e-19
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 26/175 (14%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLT-EKKIPSHILLGVNQLVYDRYLCTAIYERN 732
++P+CLP + E+ +P+ + + ++ L +
Sbjct: 324 TIRPICLP--CTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLT----RKE 377
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG---GKVGKDSCNGDSGGPL 789
+ +K C +Y ++ + T LC G ++C GDSGGPL
Sbjct: 378 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTP-RFLCTGGVSPYADPNTCRGDSGGPL 436
Query: 790 MWMGSFDRSISARTYLLGIVSLGPST-CG--------MLRIPGVYTRTSYFLRWI 835
+ +R +G++S G C + L W+
Sbjct: 437 I------VHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWL 485
Score = 79.6 bits (196), Expect = 1e-15
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 30/91 (32%)
Query: 99 ICVG---GKVGKDSCYGDSGGPL------TWMGSFDSAISARNYLIGLVSYGPED-CGK- 147
+C G ++C GDSGGPL + +G++S+G D C
Sbjct: 414 LCTGGVSPYADPNTCRGDSGGPLIVHKRSRF------------IQVGVISWGVVDVCKNQ 461
Query: 148 -------TENPGVYTRMTYFLQWILDHLEDE 171
+ + L W+ + L+DE
Sbjct: 462 KRQKQVPAHARDFHINLFQVLPWLKEKLQDE 492
Score = 70.7 bits (173), Expect = 7e-13
Identities = 25/126 (19%), Positives = 36/126 (28%), Gaps = 35/126 (27%)
Query: 303 PRLNGTHLMSCCYYLAYADNGISIDYNSGQ-----MCVG---GNVGKDSCNGDSGGPL-- 352
NG SC YA + S +C G ++C GDSGGPL
Sbjct: 379 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV 438
Query: 353 ----TWMGSFDSAISARTYLIGLVSLGPAS-CG--------VYEIPGVYSRTSYFLRWIL 399
+ +G++S G C + L W+
Sbjct: 439 HKRSRF------------IQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLK 486
Query: 400 DHLDDH 405
+ L D
Sbjct: 487 EKLQDE 492
Score = 48.4 bits (115), Expect = 8e-06
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 52/130 (40%)
Query: 203 CGLASEQRIIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNPEQ 242
CG+ PW A+I+ R HC T ++
Sbjct: 211 CGM----VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDK 266
Query: 243 ISS--VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE--------PNMRN 292
S V +G +D+ + V+ H +++
Sbjct: 267 EHSIKVSVGGEK------------------RDLEIEVVLFHPNYNINGKKEAGIPEFYDY 308
Query: 293 DIALLRLERP 302
D+AL++L+
Sbjct: 309 DVALIKLKNK 318
Score = 32.6 bits (74), Expect = 0.63
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 11/40 (27%)
Query: 434 QDIKVIQFLTHENYTGTK-----------NDIALLRLEKS 462
+D+++ L H NY D+AL++L+
Sbjct: 279 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNK 318
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 127 bits (321), Expect = 4e-31
Identities = 31/233 (13%), Positives = 61/233 (26%), Gaps = 67/233 (28%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTK---------NDIALLRLEKSPEWNGYVHPVCLPYGNA 541
++ + + + + K +DIALL+L + + + + P+CLP
Sbjct: 285 QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTME 344
Query: 542 MTRNFE---NENTIVAGWGVTEDGRSSLELLAVQQK--------VFNSEECKARYQELDP 590
+ +A+ C +
Sbjct: 345 ANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKT 404
Query: 591 SSQ-------------ICVGGKVGKDACKGDSGGPL------TWMGSFDSAILARNYLIG 631
+C G + + CKG+SGG + + + +G
Sbjct: 405 MFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRF------------FQVG 452
Query: 632 LVSYGPTCGTK----------------SENPGVYTRMTYFLQWILDHLEDEVN 668
LVS+G + + W+ HL D +N
Sbjct: 453 LVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGDVLN 505
Score = 90.0 bits (223), Expect = 7e-19
Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 54/201 (26%)
Query: 662 HLEDEVNIPEVHYVQPVCLPYGDGLKYNFE---GKDTIVAGWGLTEKK---IPSHILLGV 715
L +V + + +P+CLP G L K+ L G
Sbjct: 323 KLAQKVKMST--HARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGS 380
Query: 716 NQLVY-----DRYLCTAIYERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQL 770
+ + C + + +V D+ L
Sbjct: 381 KLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQ-------------------FL 421
Query: 771 CVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLG----------------PS 814
C G + + C G+SGG + R + +G+VS G
Sbjct: 422 CSGTQEDESPCKGESGGAVF------LERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAP 475
Query: 815 TCGMLRIPGVYTRTSYFLRWI 835
+ + W+
Sbjct: 476 RSKVPPPRDFHINLFRMQPWL 496
Score = 76.5 bits (188), Expect = 1e-14
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 34/95 (35%)
Query: 99 ICVGGKVGKDSCYGDSGGPL------TWMGSFDSAISARNYLIGLVSYGPED-------- 144
+C G + + C G+SGG + + + +GLVS+G +
Sbjct: 421 LCSGTQEDESPCKGESGGAVFLERRFRF------------FQVGLVSWGLYNPCLGSADK 468
Query: 145 --------CGKTENPGVYTRMTYFLQWILDHLEDE 171
+ + W+ HL D
Sbjct: 469 NSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGDV 503
Score = 67.3 bits (164), Expect = 1e-11
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 34/97 (35%)
Query: 330 SGQMCVGGNVGKDSCNGDSGGPL------TWMGSFDSAISARTYLIGLVSLG-------- 375
+C G + C G+SGG + + + +GLVS G
Sbjct: 418 DQFLCSGTQEDESPCKGESGGAVFLERRFRF------------FQVGLVSWGLYNPCLGS 465
Query: 376 --------PASCGVYEIPGVYSRTSYFLRWILDHLDD 404
V + W+ HL D
Sbjct: 466 ADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGD 502
Score = 57.3 bits (138), Expect = 1e-08
Identities = 18/149 (12%), Positives = 34/149 (22%), Gaps = 47/149 (31%)
Query: 182 NIPEVHPEQHKNWHLLPPKD-KCGLASEQRIIGGYVAKLGSIPWIARIAYSRTPHC---- 236
+ +H + D CG + + PW I C
Sbjct: 198 DTKALHQVFEHMLDVSKLTDTICG----VGNMSANASDQERTPWHVTIKPKSQETCRGAL 253
Query: 237 ---------------ATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISH 281
+ V +G+ + ++ + K +
Sbjct: 254 ISDQWVLTAAHCFRDGNDHSLWR-VNVGDPKS--------------QWGKEFLIEKAVIS 298
Query: 282 EHFS--------GEPNMRNDIALLRLERP 302
F +DIALL+L +
Sbjct: 299 PGFDVFAKKNQGILEFYGDDIALLKLAQK 327
Score = 32.2 bits (73), Expect = 0.85
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 36/86 (41%)
Query: 396 RWIL---------DHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHEN 446
+W+L + V +G+ ++ + + +
Sbjct: 257 QWVLTAAHCFRDGNDHSLWRVNVGDPKS----------------QWGKEFLIEKAVISPG 300
Query: 447 YTGTK-----------NDIALLRLEK 461
+ +DIALL+L +
Sbjct: 301 FDVFAKKNQGILEFYGDDIALLKLAQ 326
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 115 bits (290), Expect = 5e-30
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE----LL 569
+D+ LLRL+ + V + LP +GWG E G E +
Sbjct: 8 HDLMLLRLQSPAKITDAVKVLELPTQEPEL----GSTCEASGWGSIEPGPDDFEFPDEIQ 63
Query: 570 AVQQKVFNSEECKARYQELDPSSQICVGGKVG-KDACKGDSGGPLTWMGSFDSAILARNY 628
VQ + + C + + S +C G G KD C GDSGGPL
Sbjct: 64 CVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLI----------CNGM 113
Query: 629 LIGLVSYGP-TCGTKSENPGVYTRMTYFLQWILDHLE 664
G+ S+G CG+ ++ P +YT++ ++L WI D +
Sbjct: 114 WQGITSWGHTPCGSANK-PSIYTKLIFYLDWIDDTIT 149
Score = 83.4 bits (207), Expect = 6e-19
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVG-KDSCYGDSGGPLTWM 121
+D E+ VQ + + C + S +C G G KD+C GDSGGPL
Sbjct: 52 GPDDFEFPDEIQCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPL--- 108
Query: 122 GSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
G+ S+G CG P +YT++ ++L WI D +
Sbjct: 109 -------ICNGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149
Score = 79.5 bits (197), Expect = 1e-17
Identities = 39/166 (23%), Positives = 55/166 (33%), Gaps = 49/166 (29%)
Query: 674 YVQPVCLPYGDGLKYNFEGKDTIVAGWGLT----EKKIPSHILLGVNQLVYDRYLCTAIY 729
V+ + LP + G +GWG + + V + C +
Sbjct: 24 AVKVLELPTQE----PELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAH 79
Query: 730 ERNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPL 789
V + LC A Y G GKD+C GDSGGPL
Sbjct: 80 PDK-------------VTESMLC-AGYL---------PG--------GKDTCMGDSGGPL 108
Query: 790 MWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ G GI S G + CG P +YT+ ++L WI
Sbjct: 109 ICNGM----------WQGITSWGHTPCGSANKPSIYTKLIFYLDWI 144
Score = 66.4 bits (163), Expect = 5e-13
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 54/156 (34%)
Query: 289 NMRNDIALLRLERPPRLN---------------GT--------HLMSCCYYLAYADN--- 322
+ +D+ LLRL+ P ++ G+ + + D
Sbjct: 5 DYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQC 64
Query: 323 -GISI--------DYN----SGQMCVG---GNVGKDSCNGDSGGPLTWMGSFDSAISART 366
+++ + +C G G GKD+C GDSGGPL G
Sbjct: 65 VQLTLLQNTFCADAHPDKVTESMLCAGYLPG--GKDTCMGDSGGPLICNGM--------- 113
Query: 367 YLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHL 402
G+ S G CG P +Y++ ++L WI D +
Sbjct: 114 -WQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 124 bits (311), Expect = 3e-29
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 491 PPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
P VQ+I+V + DIALL+L V P CLP + +
Sbjct: 628 PHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLP--SPNYVVADRTE 679
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKAR--YQELDPSSQICVGG-KVGKDACKG 607
+ GWG T+ + L Q V ++ C S+++C G G D+C+G
Sbjct: 680 CFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 739
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
DSGGPL + L G+ S+G C + PGVY R++ F+ WI +
Sbjct: 740 DSGGPLVCFEK------DKYILQGVTSWGLGCARPN-KPGVYVRVSRFVTWIEGVMR 789
Score = 87.8 bits (217), Expect = 7e-18
Identities = 59/281 (20%), Positives = 81/281 (28%), Gaps = 91/281 (32%)
Query: 188 PEQHKNWHLLPPKDKCGLASEQRIIGGYVAKLGSIPWIARIAYSRTP------------- 234
P+ R++GG VA S PW +
Sbjct: 539 PQCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWV 598
Query: 235 ----HCATNPEQISS--VRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEP 288
HC + SS V LG H + P VQ+I V ++
Sbjct: 599 LTAAHCLEKSPRPSSYKVILGAHQEVNL----------EPHVQEIEVSRLFLEPTR---- 644
Query: 289 NMRNDIALLRLERPPRLNGT--------------HLMSC--------------------- 313
DIALL+L P + C
Sbjct: 645 ---KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQ 701
Query: 314 --------CYYLAYADNGISIDYNSGQMCVGG-NVGKDSCNGDSGGPLTWMGSFDSAISA 364
C + + + S ++C G G DSC GDSGGPL
Sbjct: 702 LPVIENKVCNRYEFLNGRVQ----STELCAGHLAGGTDSCQGDSGGPLV------CFEKD 751
Query: 365 RTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDH 405
+ L G+ S G C PGVY R S F+ WI + ++
Sbjct: 752 KYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWIEGVMRNN 791
Score = 86.3 bits (213), Expect = 2e-17
Identities = 44/163 (26%), Positives = 58/163 (35%), Gaps = 40/163 (24%)
Query: 674 YVQPVCLPYGDGLKYNF-EGKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYERN 732
V P CLP + Y + + + GWG T+ + +L V + +C N
Sbjct: 661 KVIPACLPSPN---YVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLN 717
Query: 733 GISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWM 792
G V LC A + G DSC GDSGGPL+
Sbjct: 718 GR-----------VQSTELC-AGHLA-----------------GGTDSCQGDSGGPLV-- 746
Query: 793 GSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSYFLRWI 835
+ L G+ S G C PGVY R S F+ WI
Sbjct: 747 ----CFEKDKYILQGVTSWGLG-CARPNKPGVYVRVSRFVTWI 784
Score = 72.0 bits (176), Expect = 4e-13
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 63 STEDKRPSLELLAVQQKVFNSEKCKAR--YQKLDPSSQICVGG-KVGKDSCYGDSGGPLT 119
T+ + L Q V ++ C S+++C G G DSC GDSGGPL
Sbjct: 687 ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLV 746
Query: 120 WMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
+ L G+ S+G C + PGVY R++ F+ WI +
Sbjct: 747 ------CFEKDKYILQGVTSWG-LGCARPNKPGVYVRVSRFVTWIEGVMR 789
Score = 34.6 bits (79), Expect = 0.14
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 431 PPVQDIKVIQFLTHENYTGTKNDIALLRLEKS 462
P VQ+I+V + DIALL+L
Sbjct: 628 PHVQEIEVSRLFLEPTR----KDIALLKLSSP 655
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 122 bits (308), Expect = 6e-29
Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 69/229 (30%)
Query: 494 QDIKVIQFLTHENYTDSGTK---------NDIALLRLEKSPEWNGYVHPVCLPYGNAMTR 544
+D+++ L H NY +G K D+AL++L+ ++ + P+CLP TR
Sbjct: 521 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 580
Query: 545 NFENENTIVAGWGVTEDG-------------RSSLELLAVQQKVFNSEE---CKARYQEL 588
++ +L + + N ++ C+ Q
Sbjct: 581 AL--RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYA 638
Query: 589 DPSSQ------------ICVG---GKVGKDACKGDSGGPL------TWMGSFDSAILARN 627
+ +C G + C+GDSGGPL +
Sbjct: 639 PGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRF------------ 686
Query: 628 YLIGLVSYGPTCG---------TKSENPGVYTRMTYFLQWILDHLEDEV 667
+G++S+G + + + L W+ + L+DE
Sbjct: 687 IQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDED 735
Score = 82.4 bits (203), Expect = 3e-16
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 30/177 (16%)
Query: 674 YVQPVCLPYGDGLKYNFE---GKDTIVAGWGLTEKKIPSHILLGVNQLVYDRYLCTAIYE 730
++P+CLP +G L + + + + +
Sbjct: 566 TIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKK--------LTR 617
Query: 731 RNGISIDTNKGQLCLVYDRYLCTAIYERNGISIDTNKGQLCVG---GKVGKDSCNGDSGG 787
+ + +K C +Y ++ + T LC G ++C GDSGG
Sbjct: 618 KEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTP-RFLCTGGVSPYADPNTCRGDSGG 676
Query: 788 PLMWMGSFDRSISARTYLLGIVSLGPST-CG--------MLRIPGVYTRTSYFLRWI 835
PL+ +R +G++S G C + L W+
Sbjct: 677 PLI------VHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWL 727
Score = 75.9 bits (186), Expect = 3e-14
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 30/91 (32%)
Query: 99 ICVG---GKVGKDSCYGDSGGPL------TWMGSFDSAISARNYLIGLVSYGPED-CGK- 147
+C G ++C GDSGGPL + +G++S+G D C
Sbjct: 656 LCTGGVSPYADPNTCRGDSGGPLIVHKRSRF------------IQVGVISWGVVDVCKNQ 703
Query: 148 -------TENPGVYTRMTYFLQWILDHLEDE 171
+ + L W+ + L+DE
Sbjct: 704 KRQKQVPAHARDFHINLFQVLPWLKEKLQDE 734
Score = 67.0 bits (163), Expect = 1e-11
Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 23/120 (19%)
Query: 303 PRLNGTHLMSCCYYLAYADNGISIDYNSGQ-----MCVG---GNVGKDSCNGDSGGPLTW 354
NG SC YA + S +C G ++C GDSGGPL
Sbjct: 621 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPL-- 678
Query: 355 MGSFDSAISARTYLIGLVSLGPAS-CG--------VYEIPGVYSRTSYFLRWILDHLDDH 405
+ S R +G++S G C + L W+ + L D
Sbjct: 679 IVHKRS----RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE 734
Score = 47.0 bits (111), Expect = 3e-05
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 52/132 (39%)
Query: 201 DKCGLASEQRIIGGYVAKLGSIPWIARIAYSRTP--------------------HCATNP 240
CG PW A+I+ R HC T
Sbjct: 451 SLCG----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVD 506
Query: 241 EQIS--SVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGE--------PNM 290
++ V +G +D+ + V+ H +++
Sbjct: 507 DKEHSIKVSVGGEK------------------RDLEIEVVLFHPNYNINGKKEAGIPEFY 548
Query: 291 RNDIALLRLERP 302
D+AL++L+
Sbjct: 549 DYDVALIKLKNK 560
Score = 31.2 bits (70), Expect = 1.8
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 11/40 (27%)
Query: 434 QDIKVIQFLTHENYTGTK-----------NDIALLRLEKS 462
+D+++ L H NY D+AL++L+
Sbjct: 521 RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNK 560
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 81.8 bits (203), Expect = 4e-19
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 73 LLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARN 132
L + ++ CK + + IC G G SC GDSGGPL +
Sbjct: 7 LQQASLPLLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPLV------CKKNGAW 59
Query: 133 YLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLE 169
L+G+VS+G T PGVY R+T + W+ L
Sbjct: 60 TLVGIVSWG-SSTCSTSTPGVYARVTALVNWVQQTLA 95
Score = 81.8 bits (203), Expect = 5e-19
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 562 GRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPL------TW 615
+ L + ++ CK + + IC G G +C GDSGGPL W
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS-GVSSCMGDSGGPLVCKKNGAW 59
Query: 616 MGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLE 664
L+G+VS+G + + S PGVY R+T + W+ L
Sbjct: 60 ------------TLVGIVSWGSSTCSTS-TPGVYARVTALVNWVQQTLA 95
Score = 72.9 bits (180), Expect = 5e-16
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 770 LCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTS 829
+C G G SC GDSGGPL+ + L+GIVS G S+ PGVY R +
Sbjct: 33 ICAGAS-GVSSCMGDSGGPLV------CKKNGAWTLVGIVSWG-SSTCSTSTPGVYARVT 84
Query: 830 YFLRWI 835
+ W+
Sbjct: 85 ALVNWV 90
Score = 67.9 bits (167), Expect = 4e-14
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 333 MCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTS 392
+C G + G SC GDSGGPL + L+G+VS G +S PGVY+R +
Sbjct: 33 ICAGAS-GVSSCMGDSGGPLV------CKKNGAWTLVGIVSWG-SSTCSTSTPGVYARVT 84
Query: 393 YFLRWILDHLDDH 405
+ W+ L +
Sbjct: 85 ALVNWVQQTLAAN 97
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 71.8 bits (177), Expect = 4e-15
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 461 KSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLR 520
+ +V GE + +Q +K+ + + Y NDI LL+
Sbjct: 45 VTTSDVVVAGEFD---------QGSSS---EKIQKLKIAKVFKNSKYNSLTINNDITLLK 92
Query: 521 LEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVT 559
L + ++ V VCLP +A + GWG+T
Sbjct: 93 LSTAASFSQTVSAVCLP--SASDDFAAGTTCVTTGWGLT 129
Score = 64.1 bits (157), Expect = 2e-12
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 30/113 (26%)
Query: 211 IIGGYVAKLGSIPWIARIAYSR----------TP-------HCATNPEQISSVRLGEHDA 253
I+ G A GS PW + HC + V GE D
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDV--VVAGEFDQ 58
Query: 254 NSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN 306
S +Q +++ KV + ++ + NDI LL+L +
Sbjct: 59 GSSS----------EKIQKLKIAKVFKNSKYNSL-TINNDITLLKLSTAASFS 100
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 405 HFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYT--GTKNDIALLRLEKS 462
V GE + + +Q +K+ + + Y NDI LL+L +
Sbjct: 49 DVVVAGEFDQGSSS------------EKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTA 96
Score = 32.2 bits (74), Expect = 0.25
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 674 YVQPVCLPYGDGLKYNFE-GKDTIVAGWGLT 703
V VCLP +F G + GWGLT
Sbjct: 102 TVSAVCLPSAS---DDFAAGTTCVTTGWGLT 129
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 51.9 bits (124), Expect = 2e-07
Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 37/171 (21%)
Query: 492 PVQDIKVIQFLTHENYTDSGT-KNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
+ +F Y ++G + D A+++ + + V + +T
Sbjct: 73 VNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNI--GNTVGYRSIRQVTNLT----GTT 126
Query: 551 TIVAGWGVT-EDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDS 609
++G+ + + V + A Y D G+S
Sbjct: 127 IKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYT---------------IDTFSGNS 171
Query: 610 GGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMT-YFLQWI 659
G + D ++G+ + G + GT + T F+++I
Sbjct: 172 GSAM-----LDQ----NQQIVGVHNAGYSNGT----INGGPKATAAFVEFI 209
Score = 40.7 bits (95), Expect = 9e-04
Identities = 20/188 (10%), Positives = 50/188 (26%), Gaps = 49/188 (26%)
Query: 235 HCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDI 294
HC N S G + + + + + + + D
Sbjct: 47 HCVYNTASRSYSAKGSVYPGMNDSTAVN--------GSANMTEFYVPSGYINTGASQYDF 98
Query: 295 ALLRLERPPRLN-----------------------GTHLMSCCYYLAYADNGISIDYNSG 331
A+++ + G + S + +G ++
Sbjct: 99 AVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTN 158
Query: 332 QMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSR- 390
D+ +G+SG + D ++G+ + G ++ +
Sbjct: 159 LAY----YTIDTFSGNSGSAM-----LDQ----NQQIVGVHNAGYSNGT----INGGPKA 201
Query: 391 TSYFLRWI 398
T+ F+ +I
Sbjct: 202 TAAFVEFI 209
Score = 35.7 bits (82), Expect = 0.035
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMT-YFLQWI 164
D+ G+SG + D ++G+ + G + + T F+++I
Sbjct: 165 DTFSGNSGSAM-----LDQ----NQQIVGVHNAGYSN----GTINGGPKATAAFVEFI 209
Score = 31.5 bits (71), Expect = 0.91
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTR-TSYFLRWI 835
D+ +G+SG + D++ ++G+ + G S + T+ F+ +I
Sbjct: 165 DTFSGNSGSAM-----LDQN----QQIVGVHNAGYSNGT----INGGPKATAAFVEFI 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 5e-06
Identities = 104/717 (14%), Positives = 180/717 (25%), Gaps = 246/717 (34%)
Query: 157 MTYFLQWILDHLEDEWILD----HLED---------EVN--IPEVHPEQHKN---WHLLP 198
Y + IL ED ++ + ++D E++ I W LL
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL- 72
Query: 199 PKDKCGLASEQRIIGGYVAKLGSIPWIA-RIAYSRTPHCATNPEQISSVRLGEHDA--NS 255
K Q+ + + + ++ I P ++ + + + D N
Sbjct: 73 --SK-QEEMVQKFVEEVLRI--NYKFLMSPIKTE-----QRQPSMMTRMYIEQRDRLYND 122
Query: 256 DPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLNGTHLMSCCY 315
+ + + P +R ALL L RP
Sbjct: 123 NQVFAKYNVSRLQPYLKLR-------------------QALLEL-RP------------- 149
Query: 316 YLAYADNGISIDYNSGQMCVGGNVGK-----DSCNGDS-----GGPLTWMGSFDSAISAR 365
+ ID G + G GK D C + W+ + + S
Sbjct: 150 -----AKNVLID---G-V--LG-SGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPE 196
Query: 366 TYLIGLVSL-GPASCGVYEIPGVYSRTSYFLRWILDHLDDHFVRLGEQN--VITDPDCQN 422
T L L L S + I L +N ++ +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-N--- 252
Query: 423 INGHKVCAPPVQDIKVIQ-F-------LTHENYTGTKN-DIALLRLEKSPDHIVRLGEQN 473
VQ+ K F LT T+ + + HI
Sbjct: 253 ----------VQNAKAWNAFNLSCKILLT------TRFKQVTDFLSAATTTHISLDHHSM 296
Query: 474 VITDPD----CQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALL--RLEKSPE- 526
+T + P + + ++++ +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-------------LSIIAESIRDGLAT 343
Query: 527 WNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQ 586
W+ + H N + TI+ SSL +L E + +
Sbjct: 344 WDNWKHV-----------NCDKLTTII---------ESSLNVL-------EPAEYRKMFD 376
Query: 587 EL-----D---PSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT 638
L P+ + + W + L Y
Sbjct: 377 RLSVFPPSAHIPTILLSL-----------------IWFDV--IKSDVMVVVNKLHKYS-- 415
Query: 639 CGTKSENPGVYTRMTYFLQWILDHLEDEVNIPEVH------YVQPVCL-------PYGDG 685
K + + L+ N +H Y P PY D
Sbjct: 416 LVEKQPKESTIS--IPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 686 LKYNFEG----------KDTIVAGWGL----TEKKI---------PSHILLGVNQL-VYD 721
Y+ G + T+ L E+KI IL + QL Y
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 722 RYLC--TAIYERNGISIDTN--KGQLCLVYDRYLC---TAI-YERNGISIDTNKGQL 770
Y+C YER +I K + L+ +Y A+ E I + +K Q+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK-QV 587
Score = 46.4 bits (109), Expect = 4e-05
Identities = 39/306 (12%), Positives = 88/306 (28%), Gaps = 85/306 (27%)
Query: 8 LNPELVNLNINFIIIL-DLIFRFYFHVMIIKIK-TRARSPFI-----PNIRFKSPIHLLA 60
L I+ II+ D + + K F+ N +F L++
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----LMS 96
Query: 61 LFSTEDKRPSLEL---LAVQQKVFNSEKCKARY---------------QKLDPSSQICVG 102
TE ++PS+ + + +++N + A+Y +L P+ + +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 103 GK--VGK-----DSCYGDS-----GGPLTWMGSFDSAISARNYLIGLVS----YGPEDCG 146
G GK D C + W+ + + S L L P
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 147 KTENPG--------VYTRMTYFLQW--------ILDHLEDEWILDHLE----------DE 180
++++ + + L+ +L ++++ + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 181 VNIPEVHPEQHKNWHLLPPKDKCGLASEQRIIGGYVAKLGSIPWIARIAYSRTPH--CAT 238
+ + L L ++ + K ++ P T
Sbjct: 276 QVTDFLSAATTTHISLDHHSM--TLTPDEVK--SLLLK-----YL-DCRPQDLPREVLTT 325
Query: 239 NPEQIS 244
NP ++S
Sbjct: 326 NPRRLS 331
Score = 42.5 bits (99), Expect = 6e-04
Identities = 54/444 (12%), Positives = 113/444 (25%), Gaps = 170/444 (38%)
Query: 21 IILD------LIFRFYFHVMIIKIKTRARS--PFIPNIRFKSP--IHLLALFSTEDKRPS 70
++L F I+ + TR + F+ H T D+
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDE--V 303
Query: 71 LELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISA 130
LL K + R Q L P ++ + P +S
Sbjct: 304 KSLLL---KYLDC-----RPQDL-PR-EVL-------------TTNPR--------RLS- 331
Query: 131 RNYLIG-LVSYGPE--DCGKTENPGVYTRMTYFLQWILDHLEDEWILDHLED------EV 181
+I + G D K N ++T ++ L+ LE +
Sbjct: 332 ---IIAESIRDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 182 NIPEVHPEQHKNWHLLPPKDKCGLASEQRIIGGYVAKLGSIPWIARIAYSRTPHCATNPE 241
+IP + W + D + V KL + + P+
Sbjct: 386 HIPTILLS--LIWFDVIKSD------VMVV----VNKLHKYSLVEK-----------QPK 422
Query: 242 QISSVRLGEHDANSDPDCSPD-----HRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIAL 296
+ S++ + + + HR V + K +
Sbjct: 423 E-STISI--PSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLI----------- 465
Query: 297 LRLERPPRLNG---THLMSCCYYLAYADNG--------ISIDYNSGQMCVGGNVGKDSCN 345
PP L+ +H+ ++L ++ + +D+
Sbjct: 466 -----PPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLDFR---------------- 501
Query: 346 GDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDH---- 401
+ + + + A I + ++ +I D+
Sbjct: 502 --------F-------LEQK-----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 402 ---LDD--HFVRLGEQNVITDPDC 420
++ F+ E+N+I
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYT 565
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 43.7 bits (104), Expect = 9e-06
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 29/91 (31%)
Query: 211 IIGGYVAKLGSIPWIARIAYSRTP----------------HCATNPEQISSVRLGEHDAN 254
IIGG + S PW I + + HC + + V LG H+
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKNDNYE---VWLGRHNLF 57
Query: 255 SDPDCSPDHRQCAPPVQDIRVVKVISHEHFS 285
+ Q V H F+
Sbjct: 58 EN----------ENTAQFFGVTADFPHPGFN 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 3e-05
Identities = 79/448 (17%), Positives = 126/448 (28%), Gaps = 160/448 (35%)
Query: 11 ELVNL-NINFIIILDLIFRFYFHVMIIKIKTRARSPFIPNIRFKSPIHLLALFSTEDKRP 69
EL +L +++ DLI + R+ F +++L P
Sbjct: 172 ELRDLYQTYHVLVGDLI-----KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 70 SLELLA--------------VQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSG 115
+ L V K P G++ + G +G
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVT----AKL--LGFTP-------GEL-RSYLKGATG 272
Query: 116 ------------GPLTWMGSF-DSAISARNYL--IGLVS---YGP--------EDCGKTE 149
+W SF S A L IG+ Y ED
Sbjct: 273 HSQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS-LEN 330
Query: 150 NPGVYTRMTYFLQWILDHLEDEWILDHLEDEVNIPEVHPEQHKNWHL-L----------- 197
N GV + M L + +L E + D++ ++ N H K + L
Sbjct: 331 NEGVPSPM---LS--ISNLTQEQVQDYV-NKTN---SHLPAGKQVEISLVNGAKNLVVSG 381
Query: 198 PPKDKCGLASEQRIIGGYVAKLGSIPWIARIAYS-RTPHCATN--PEQISS--------- 245
PP+ GL R K S +RI +S R + P ++S
Sbjct: 382 PPQSLYGLNLTLRKA-----KAPSGLDQSRIPFSERKLKFSNRFLP--VASPFHSHLLVP 434
Query: 246 -VRLGEHDANSDPDCSPDHRQCAPPV------QDIRVVKVISHEHFSGE--PNMRNDIAL 296
L D + + S + + PV D+R SG + + I
Sbjct: 435 ASDLINKDLVKN-NVSFNAKDIQIPVYDTFDGSDLR--------VLSGSISERIVDCIIR 485
Query: 297 LRL--ERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNGDSG-GPLT 353
L + E + TH+ +D+ G G SG G LT
Sbjct: 486 LPVKWETTTQFKATHI---------------LDFGPG--------------GASGLGVLT 516
Query: 354 ---WMGSFDSAISARTYLIGLVSLGPAS 378
G+ R + G + + P
Sbjct: 517 HRNKDGT-----GVRVIVAGTLDINPDD 539
Score = 46.2 bits (109), Expect = 6e-05
Identities = 102/690 (14%), Positives = 171/690 (24%), Gaps = 286/690 (41%)
Query: 173 ILDH--LEDEVNIPE---VHPEQHKN--WHLLP-PKDKCGLASEQRIIGGYVAK-LGSIP 223
L H LE + +P Q + +LP P + E V K LG
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG--- 66
Query: 224 WIARIAYSRTPHCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEH 283
+ ++ E + Q +V+ +
Sbjct: 67 -----------YVSSLVEP------------------------SKVGQFDQVLNLC-LTE 90
Query: 284 FSGEPN-MR-NDI----ALLRLERPPRLNGTHLMSCCYYLAYADNGISIDYNSGQMCVGG 337
F E + NDI A L E L T + Y A D S
Sbjct: 91 F--ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS------- 141
Query: 338 NVGKDSCNGDSGGPLTWMGSFDSAIS--ARTYLI-GLVSLGPASCGVY--EIPGVYSRTS 392
+S L F + A+ I G G + Y E+ +Y
Sbjct: 142 ---------NS--AL-----FRAVGEGNAQLVAIFG----GQGNTDDYFEELRDLYQTYH 181
Query: 393 YFLRWILDHLDDHFVRLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTKN 452
+ ++ + L + + Q + ++++L +
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFT------------QGLNILEWLEN-------- 221
Query: 453 DIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAP---PVQDIKVIQF-------- 501
P PD + + P P+ I VIQ
Sbjct: 222 ----------PS-----------NTPDKDYL----LSIPISCPL--IGVIQLAHYVVTAK 254
Query: 502 ---LTHENYTD-----SGTKNDI--ALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENT 551
T +G + A+ + ++ W + F +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVA-IAETDSWESF---------------FVSVRK 298
Query: 552 IVA-----GWGVTED-GRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGG----KVG 601
+ G E +SL ++ + N+E PS + + +V
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG--------VPSPMLSISNLTQEQVQ 350
Query: 602 KDACKGDSGGPLTWMGSFDSAI---L---ARNY--------LIGLVSY-----GPTCGTK 642
K +S P + L A+N L GL P+ +
Sbjct: 351 DYVNKTNSHLPA------GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 643 SENPG------VYTRMTYFL---------------QWILDHL-EDEVNIPEVHYVQPVCL 680
S P R FL I L ++ V+ PV
Sbjct: 405 SRIPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-- 459
Query: 681 PYGDGLKYNFE-GKD----------TIV-------AGWGLTEKKIPSHILL-------GV 715
Y+ G D IV W T + +HIL G+
Sbjct: 460 -------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 716 NQLVYDRYLCTAIYERNGI------SIDTN 739
L + + G+ ++D N
Sbjct: 513 GVLTH------RNKDGTGVRVIVAGTLDIN 536
Score = 38.9 bits (90), Expect = 0.008
Identities = 83/525 (15%), Positives = 144/525 (27%), Gaps = 202/525 (38%)
Query: 54 SPIHLLALFSTEDKRPSLELLAVQQKVFNSEKCKARYQKLDPSSQICVGGKVGKDSCYGD 113
+P L+ F L ++ ++PS
Sbjct: 56 TPAELVGKF--------LGYVS---------------SLVEPSKV--------------- 77
Query: 114 SGGPLTWMGSFDSAISA------RNYLIG-----LVSYGPEDCGKTENPGVYTRMTYFLQ 162
G FD ++ YL G L + ++ T Y
Sbjct: 78 --------GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 163 WILDHLEDEWILDHLEDEVNIPEVHPEQHKNWHLLPPKDKCGLASEQRII---GG----- 214
I+ P L + +++ GG
Sbjct: 130 RIM---------------AKRPFDKKSNSA---LF----RAVGEGNAQLVAIFGGQGNTD 167
Query: 215 -YVAKLGSIPWIARIAYSRTPHCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDI 273
Y +L R Y + + S+ L E + D Q +
Sbjct: 168 DYFEEL-------RDLYQTYHVLVGDLIKFSAETLSEL-IRTTLDAEKVFT------QGL 213
Query: 274 RVVKVISHEHFSGEPNMRNDIALLRLERP---PRLNGTHLMSCCYYLAYADNGISIDYNS 330
+++ + + P+ D L L P P L G ++ +Y+ A + +
Sbjct: 214 NILEWLEN------PSNTPDKDYL-LSIPISCP-LIG--VIQLAHYVVTA---KLLGFTP 260
Query: 331 GQM--CVGGNVGKDSCNGD-------SGGPLTWMGSF-DSAISARTYL--IGL------- 371
G++ + G G + + +W SF S A T L IG+
Sbjct: 261 GELRSYLKGATG---HSQGLVTAVAIAETD-SW-ESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 372 -VSLGPA----SCGVYE-IP----GVYSRTSYFLRWILDHLDDH-------FVRL--GEQ 412
SL P+ S E +P + + T ++ ++ + H + L G +
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 413 N-VITDP--DCQNINGH--KVCAPPVQD---IK--------VIQFLT-----HENYTGTK 451
N V++ P +N K AP D I +FL H +
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL---- 431
Query: 452 NDIALLRLEKSPDHIV-RLGEQNVITDPDCQNINGHEVCAPPVQD 495
L + D I L + NV + N + PV D
Sbjct: 432 -------LVPASDLINKDLVKNNV-------SFNAKD-IQIPVYD 461
Score = 31.6 bits (71), Expect = 1.6
Identities = 56/332 (16%), Positives = 91/332 (27%), Gaps = 130/332 (39%)
Query: 388 YSRTSYFLRWILDHLDDHFV-RLGEQNVITDPDCQNINGHKVCAPPVQDIKVIQF----- 441
Y + + + + D+HF G I D N PV I F
Sbjct: 1636 YKTSKAA-QDVWNRADNHFKDTYGFS--ILDIVINN---------PVN--LTIHFGGEKG 1681
Query: 442 -LTHENYTGTKNDIALLRLEKSPDHIVRLGEQNVITDPDCQNINGHEVCAPPVQDIKVIQ 500
ENY+ + E D + T+ + IN +
Sbjct: 1682 KRIRENYSA-------MIFETIVD-------GKLKTEKIFKEIN---------EHSTSYT 1718
Query: 501 FLTHENYTDSGTKND-IALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENE-----NTIVA 554
F E S T+ AL +EK A + +++ + A
Sbjct: 1719 F-RSEKGLLSATQFTQPALTLMEK-----------------AAFEDLKSKGLIPADATFA 1760
Query: 555 GWGVTEDGRSSL-EL--LAVQQKVFNSEEC----KARYQELDPSSQICVGGKVGKDACKG 607
G SL E LA V + E R G + A
Sbjct: 1761 G--------HSLGEYAALASLADVMSIESLVEVVFYR-------------GMTMQVAVPR 1799
Query: 608 DSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDEV 667
D G + ++A N G V + ++ LQ++++ +
Sbjct: 1800 DELGRS------NYGMIAIN--PGRV--AASFSQEA------------LQYVVERVGKRT 1837
Query: 668 NIPEVHYVQPVCLPYGDGLKYNFEGKDTIVAG 699
+ V+ V YN E + + AG
Sbjct: 1838 G--WL--VEIVN--------YNVENQQYVAAG 1857
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 36.2 bits (83), Expect = 0.025
Identities = 21/151 (13%), Positives = 38/151 (25%), Gaps = 23/151 (15%)
Query: 492 PVQDIKVIQFLTHENYTDSG-TKNDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENEN 550
+ +T + + G ++D A LE V +
Sbjct: 67 EHGVWAAEELVTSAEWANRGDFEHDYAFAVLETKG--GTTVQQQVGTASPIAFNQPRGQY 124
Query: 551 TIVAGWGVTEDGRSSLELLAVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDSG 610
+ +G + + L ++ + Q + C + G SG
Sbjct: 125 --YSAYGYPAAAPFNGQELHSCHGTATNDPMGSSTQGIP-----C-------NMTGGSSG 170
Query: 611 GPLTWMGSFDSAILARNYLIGLVSYGPTCGT 641
GP W + SYG T
Sbjct: 171 GP--WFLGNGT----GGAQNSTNSYGYTFLP 195
Score = 33.1 bits (75), Expect = 0.27
Identities = 26/163 (15%), Positives = 42/163 (25%), Gaps = 37/163 (22%)
Query: 261 PDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDIALLRLERPPRLN-------------- 306
P + ++++ ++ + +D A LE
Sbjct: 59 PAYDYGESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFN 118
Query: 307 ---GTHLMSCCYYLAYADNGISIDYNSG---QMCVGGNVGKDSCN---GDSGGPLTWMGS 357
G + + Y A NG + G +G + CN G SGGP W
Sbjct: 119 QPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPMGSSTQGIPCNMTGGSSGGP--WFLG 176
Query: 358 FDSAISARTYLIGLVSLGPASC-----GVY---EIPGVYSRTS 392
+ S G G Y Y+ S
Sbjct: 177 NGT----GGAQNSTNSYGYTFLPNVMFGPYFGSGAQQNYNYAS 215
Score = 31.2 bits (70), Expect = 0.99
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 6/41 (14%)
Query: 108 DSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKT 148
+ G SGGP W + SYG
Sbjct: 163 NMTGGSSGGP--WFLGNGT----GGAQNSTNSYGYTFLPNV 197
Score = 28.9 bits (64), Expect = 6.5
Identities = 8/39 (20%), Positives = 10/39 (25%), Gaps = 6/39 (15%)
Query: 779 DSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCG 817
+ G SGGP W S G +
Sbjct: 163 NMTGGSSGGP--WFLGNGT----GGAQNSTNSYGYTFLP 195
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 33.4 bits (76), Expect = 0.17
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 9/87 (10%)
Query: 323 GISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVY 382
++ +Y G + GDSGG G++S G
Sbjct: 118 NVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAG---------QAQGVMSGGNVQSNGN 168
Query: 383 EIPGVYSRTSYFLRWILDHLDDHFVRL 409
S+ S + L + + L
Sbjct: 169 NCGIPASQRSSLFERLQPILSQYGLSL 195
Score = 31.1 bits (70), Expect = 1.1
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 603 DAC--KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVYTRMTYFLQWIL 660
+AC +GDSGG G++S G + ++ + + +
Sbjct: 135 NACMGRGDSGGSWITSA---------GQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQ 185
Query: 661 DHLED 665
L
Sbjct: 186 PILSQ 190
Score = 31.1 bits (70), Expect = 1.2
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 9/59 (15%)
Query: 112 GDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYFLQWILDHLED 170
GDSGG G++S G ++ + + + L
Sbjct: 141 GDSGGSWITSA---------GQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Score = 28.8 bits (64), Expect = 5.4
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 752 CTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSL 811
C I +N ++ + +G + + GDSGG + G++S
Sbjct: 111 CGTITAKN-VTANYAEGAVRGLTQGNACMGRGDSGGSWITSAG---------QAQGVMSG 160
Query: 812 GPSTCGMLRIPGVYT-RTSYF 831
G + R+S F
Sbjct: 161 GNVQSNGNNCGIPASQRSSLF 181
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 32.3 bits (72), Expect = 0.56
Identities = 21/186 (11%), Positives = 40/186 (21%), Gaps = 37/186 (19%)
Query: 235 HCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDI 294
HC ++ + + + C + + D + + S +D
Sbjct: 57 HCGMGTASTAASIVVYWNYQN-STCRAPNTPASGANGDGSMSQTQSGSTVKAT-YATSDF 114
Query: 295 ALLRLERPPRLNGTHLM----------SCCYYLAYA-----------DNGISIDYNSGQM 333
LL L + + + + G
Sbjct: 115 TLLELNNAANPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAG 174
Query: 334 ----CVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGV--YEIPGV 387
V S G + S ++G + GP+SC
Sbjct: 175 TTHLNVQWQPSGGVTEPGSSGSPIY--------SPEKRVLGQLHGGPSSCSATGTNRSDQ 226
Query: 388 YSRTSY 393
Y R
Sbjct: 227 YGRVFT 232
Score = 31.9 bits (71), Expect = 0.70
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 82 NSEKCKARYQKLDPSSQICVGGKVGKDSCYGDSGGPLTWMGSFDSAISARNYLIGLVSYG 141
S + ++ + V + S G + S ++G + G
Sbjct: 161 TSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIY--------SPEKRVLGQLHGG 212
Query: 142 PEDCGKTEN--PGVYTRMTY 159
P C T Y R+
Sbjct: 213 PSSCSATGTNRSDQYGRVFT 232
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/184 (11%), Positives = 48/184 (26%), Gaps = 36/184 (19%)
Query: 478 PDCQNINGHEVCAPPVQDIKVIQFLTHENYTDSGTKNDIALLRLEKSP--EWNGYVHPVC 535
C+ N + D + Q + + +D LL L + +N +
Sbjct: 78 STCRAPNTPA--SGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLF----- 130
Query: 536 LPYGNAMTRNFENENTIVAGWGVTEDGRSSLELLAVQQKVFNSEECKAR---YQELDPSS 592
G ++ V +K ++ + ++
Sbjct: 131 --------------WAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTT 176
Query: 593 QICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYLIGLVSYGPT--CGTKSENPGVYT 650
+ V + + S G + ++G + GP+ T + Y
Sbjct: 177 HLNVQWQPSGGVTEPGSSGSPIYSPE--------KRVLGQLHGGPSSCSATGTNRSDQYG 228
Query: 651 RMTY 654
R+
Sbjct: 229 RVFT 232
Score = 28.9 bits (63), Expect = 5.9
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 8/72 (11%)
Query: 771 CVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSLGPSTCGMLRIPGVYTRTSY 830
V + S G ++ S +LG + GPS+C
Sbjct: 179 NVQWQPSGGVTEPGSSGSPIY--------SPEKRVLGQLHGGPSSCSATGTNRSDQYGRV 230
Query: 831 FLRWILATPEAP 842
F W A
Sbjct: 231 FTSWTGGGAAAS 242
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 31.4 bits (71), Expect = 0.70
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 19/83 (22%)
Query: 323 GISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVY 382
++++Y G + S GDSGG A + +G+ S G
Sbjct: 118 NVTVNYGDGPVYNMVRTTACSAGGDSGGAHF----------AGSVALGIHSGSSGCSGT- 166
Query: 383 EIPGVYSRTSYFLRW--ILDHLD 403
+ ++ L
Sbjct: 167 ------AGSAIHQPVTEALSAYG 183
Score = 29.1 bits (65), Expect = 4.2
Identities = 10/59 (16%), Positives = 14/59 (23%), Gaps = 19/59 (32%)
Query: 112 GDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCGKTENPGVYTRMTYF--LQWILDHL 168
GDSGG A + +G+ S G + L
Sbjct: 141 GDSGGAHF----------AGSVALGIHSGSSGCSGT-------AGSAIHQPVTEALSAY 182
Score = 28.7 bits (64), Expect = 5.9
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 21/76 (27%)
Query: 592 SQICVGGKVGKDAC--KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGTKSENPGVY 649
V V AC GDSGG A + +G+ S C +
Sbjct: 124 GDGPVYNMVRTTACSAGGDSGGAH----------FAGSVALGIHSGSSGCSGTA------ 167
Query: 650 TRMTYF--LQWILDHL 663
+ L
Sbjct: 168 -GSAIHQPVTEALSAY 182
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 31.4 bits (71), Expect = 0.76
Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 43/179 (24%)
Query: 235 HCATNPEQISSVRLGEHDANSDPDCSPDHRQCAPPVQDIRVVKVISHEHFSGEPNMRNDI 294
HC + ++SS G + P +D+ V++ S + + N N
Sbjct: 35 HCGSTGTRVSS-PSGTVAGSYFPG------------RDMGWVRITSADTVTPLVNRYNGG 81
Query: 295 ALLRLERPPRLNGTHL--------MSCCYYLAYADNGISIDYNSGQMCVGGNVGKDSCNG 346
+ G+ + C + ++ Y G + + G
Sbjct: 82 TVTVTGSQEAATGSSVCRSGATTGWRCGTIQSK---NQTVRYAEGTVTGLTRTTACAEGG 138
Query: 347 DSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRW--ILDHLD 403
DSGGP + G+ S G C ++F +L +
Sbjct: 139 DSGGPWL----------TGSQAQGVTSGGTGDCRS-------GGITFFQPINPLLSYFG 180
Score = 30.2 bits (68), Expect = 1.7
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 112 GDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCG 146
GDSGGP + G+ S G DC
Sbjct: 138 GDSGGPWL----------TGSQAQGVTSGGTGDCR 162
Score = 29.1 bits (65), Expect = 4.6
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 31/132 (23%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE----LL 569
D+ +R+ + V+ N T G V G ++ +
Sbjct: 58 RDMGWVRITSADTVTPLVN-----RYNGGTVTVTGSQEAATGSSVCRSGATTGWRCGTIQ 112
Query: 570 AVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYL 629
+ Q V +E + C G GDSGGP L +
Sbjct: 113 SKNQTVRYAEGTVTGL----TRTTACAEG--------GDSGGPW----------LTGSQA 150
Query: 630 IGLVSYGPTCGT 641
G+ S G
Sbjct: 151 QGVTSGGTGDCR 162
Score = 28.7 bits (64), Expect = 6.5
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 752 CTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSL 811
C I +N ++ +G + + + GDSGGP + + G+ S
Sbjct: 108 CGTIQSKN-QTVRYAEGTVTGLTRTTACAEGGDSGGPWL----------TGSQAQGVTSG 156
Query: 812 GPSTCGMLRIPGVYTRTSYF 831
G C ++F
Sbjct: 157 GTGDCR-------SGGITFF 169
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 29.9 bits (67), Expect = 2.5
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 323 GISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCGVY 382
S+ Y G + + GDSGG L A G+ S G +C
Sbjct: 112 NSSVTYPEGTVRGLIRTTVCAEPGDSGGSLL----------AGNQAQGVTSGGSGNCRT- 160
Query: 383 EIPGVYSRTSYFLRW--ILDHLD 403
T++F IL
Sbjct: 161 ------GGTTFFQPVNPILQAYG 177
Score = 29.1 bits (65), Expect = 4.1
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 112 GDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCG 146
GDSGG L A N G+ S G +C
Sbjct: 135 GDSGGSLL----------AGNQAQGVTSGGSGNCR 159
Score = 28.3 bits (63), Expect = 8.7
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 18/80 (22%)
Query: 752 CTAIYERNGISIDTNKGQLCVGGKVGKDSCNGDSGGPLMWMGSFDRSISARTYLLGIVSL 811
C I N S+ +G + + + GDSGG L+ A G+ S
Sbjct: 105 CGTITALN-SSVTYPEGTVRGLIRTTVCAEPGDSGGSLL----------AGNQAQGVTSG 153
Query: 812 GPSTCGMLRIPGVYTRTSYF 831
G C T++F
Sbjct: 154 GSGNCR-------TGGTTFF 166
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 29.4 bits (66), Expect = 3.5
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 22/85 (25%)
Query: 323 GISIDYNSGQMCVGGNVGKDSC--NGDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCG 380
+++Y G + V G + + C GDSGGPL IGL S G +C
Sbjct: 115 NATVNYGGGDV-VYGMIRTNVCAEPGDSGGPLYSGT----------RAIGLTSGGSGNCS 163
Query: 381 VYEIPGVYSRTSYFLRW--ILDHLD 403
T++F L
Sbjct: 164 S-------GGTTFFQPVTEALSAYG 181
Score = 29.0 bits (65), Expect = 3.9
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 112 GDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCG 146
GDSGGPL IGL S G +C
Sbjct: 139 GDSGGPLYSG----------TRAIGLTSGGSGNCS 163
Score = 28.3 bits (63), Expect = 7.9
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 12/41 (29%)
Query: 603 DAC--KGDSGGPLTWMGSFDSAILARNYLIGLVSYGPTCGT 641
+ C GDSGGPL + IGL S G +
Sbjct: 133 NVCAEPGDSGGPL----------YSGTRAIGLTSGGSGNCS 163
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 29.1 bits (65), Expect = 4.1
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 10/35 (28%)
Query: 112 GDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCG 146
GDSGG G+ S G +C
Sbjct: 141 GDSGGSFISG----------TQAQGVTSGGSGNCR 165
Score = 28.7 bits (64), Expect = 5.6
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 23/85 (27%)
Query: 323 GISIDYNSGQMCVGGNVGKDSCN--GDSGGPLTWMGSFDSAISARTYLIGLVSLGPASCG 380
++ Y G V C GDSGG T G+ S G +C
Sbjct: 118 NQTVSYPQG--TVHSLTRTSVCAEPGDSGGSFISG----------TQAQGVTSGGSGNCR 165
Query: 381 VYEIPGVYSRTSYFLRW--ILDHLD 403
T+++ +L+ +
Sbjct: 166 T-------GGTTFYQEVNPMLNSWN 183
Score = 28.0 bits (62), Expect = 9.8
Identities = 22/132 (16%), Positives = 35/132 (26%), Gaps = 30/132 (22%)
Query: 514 NDIALLRLEKSPEWNGYVHPVCLPYGNAMTRNFENENTIVAGWGVTEDGRSSLE----LL 569
ND A +R + V Y + +T G V G ++ +
Sbjct: 60 NDAAFVRGTSNFTLTNLV----SRYNSGGYATVSGSSTAPIGSQVCRSGSTTGWYCGTIQ 115
Query: 570 AVQQKVFNSEECKARYQELDPSSQICVGGKVGKDACKGDSGGPLTWMGSFDSAILARNYL 629
A Q V + + +C GDSGG ++
Sbjct: 116 ARNQTVSYPQGTVHSL----TRTSVCAEP--------GDSGGSF----------ISGTQA 153
Query: 630 IGLVSYGPTCGT 641
G+ S G
Sbjct: 154 QGVTSGGSGNCR 165
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 28.7 bits (64), Expect = 5.2
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 10/35 (28%)
Query: 112 GDSGGPLTWMGSFDSAISARNYLIGLVSYGPEDCG 146
GDSGG L F + +GL S G +C
Sbjct: 135 GDSGGSL-----FAG-----STALGLTSGGSGNCR 159
Score = 28.7 bits (64), Expect = 5.6
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 27/87 (31%)
Query: 319 YADNGISIDYNSGQMCVGGNVGKDSCNGDSGGPLTWMGSFDSAISARTYLIGLVSLGPAS 378
Y +GI +C GDSGG L F + +GL S G +
Sbjct: 116 YGSSGIVYGMIQTNVCAQP--------GDSGGSL-----FAG-----STALGLTSGGSGN 157
Query: 379 CGVYEIPGVYSRTSYFLRW--ILDHLD 403
C T+++ L
Sbjct: 158 CRT-------GGTTFYQPVTEALSAYG 177
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant,
AA(Gly)B, rossman fold, unliganded, conformation, blood
group antigen, glycoprotein; HET: GOL; 1.25A {Homo
sapiens} PDB: 3ioi_A* 3ioj_A* 1zhj_A* 2o1h_A* 2o1g_A*
3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A*
2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* 2rj4_A*
3sxe_A* ...
Length = 298
Score = 29.3 bits (65), Expect = 5.8
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 351 PLTWMGSFDSAISARTYLIGLVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDHFVRLG 410
P+ W G+F+ I + + ++G + Y FL+ L+ + HF+
Sbjct: 37 PIVWEGTFNIDILNEQFRLQNTTIGLTVFAI----KKYVA---FLKLFLETAEKHFMVGH 89
Query: 411 EQN--VITDPDCQNINGHKVCAPPVQDIKVIQFLTHENYTGTKNDIALLRLEKSPDHIVR 468
+ V TD Q +V + + V++ ++ + D+++ R+E D R
Sbjct: 90 RVHYYVFTD---QPAAVPRVTLGTGRQLSVLEVRAYKRW----QDVSMRRMEMISDFCER 142
Query: 469 LGEQNV 474
V
Sbjct: 143 RFLSEV 148
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 29.0 bits (66), Expect = 6.2
Identities = 7/76 (9%), Positives = 24/76 (31%), Gaps = 15/76 (19%)
Query: 628 YLIGLVSYGPTCGTKSENPGVYTRMTYFLQWILDHLEDEVNIPEVHYVQPVCLPYGDGLK 687
+ +++ ++ + V+ R+ + ++ + ++ E
Sbjct: 242 TYVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYET--------------- 286
Query: 688 YNFEGKDTIVAGWGLT 703
Y E + V G+
Sbjct: 287 YELEDAEIGVVATGIV 302
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane,
lysosome, transport, beta barrel, phosphorylation,
fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A*
2v5n_A*
Length = 627
Score = 28.8 bits (63), Expect = 9.9
Identities = 21/125 (16%), Positives = 33/125 (26%), Gaps = 14/125 (11%)
Query: 317 LAYADNGISIDYNSGQMCVGGNVGKDS------CNGDSGGPLTWMGSFDSAISARTYLIG 370
L Y D + + Y G C + C ++G M T
Sbjct: 74 LRYVDQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPM-LISLDKQTCTLFFS 132
Query: 371 LVSLGPASCGVYEIPGVYSRTSYFLRWILDHLDDHFVRLGEQNVITDPDCQN--INGHKV 428
+ P +C V + +S L H + E + IN +
Sbjct: 133 WHT--PLACEQATECSVRNGSSIVDLSPLIHRTGGYEAYDESEDDASDTNPDFYIN---I 187
Query: 429 CAPPV 433
C P
Sbjct: 188 CQPLN 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.441
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,438,695
Number of extensions: 825775
Number of successful extensions: 3396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2278
Number of HSP's successfully gapped: 606
Length of query: 842
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 740
Effective length of database: 3,853,851
Effective search space: 2851849740
Effective search space used: 2851849740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)