BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2852
(488 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P12027|PSGP_ONCMY Polysialoglycoprotein OS=Oncorhynchus mykiss PE=1 SV=2
Length = 542
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 132/425 (31%)
Query: 9 ITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSR 68
T PS A T PS A T PS A T PS A T PS
Sbjct: 115 ATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDD 174
Query: 69 AGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 128
A T PS A T PS A T PS A T PS A T
Sbjct: 175 ATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATG 234
Query: 129 PSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGK 188
PS A T PS A T PS A T PS A T PS A
Sbjct: 235 PSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATS 294
Query: 189 CQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSL 248
T PS A T PS A T PS A T PS A T PS
Sbjct: 295 EAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSG 354
Query: 249 SRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQI 308
A T PS A T PS A T PS A T PS A
Sbjct: 355 DDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAA 414
Query: 309 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 368
T PS A T PS A T PS A T PS A T PS A
Sbjct: 415 TGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDA 474
Query: 369 GKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSP 428
T PS A T PS A T PS A T PS A T P
Sbjct: 475 TSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGP 534
Query: 429 SLSRA 433
S A
Sbjct: 535 SGDDA 539
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 132/425 (31%)
Query: 22 ITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSR 81
T PS A T PS A T PS A T PS A T PS
Sbjct: 115 ATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDD 174
Query: 82 AGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 141
A T PS A T PS A T PS A T PS A T
Sbjct: 175 ATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATG 234
Query: 142 PSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGK 201
PS A T PS A T PS A T PS A T PS A
Sbjct: 235 PSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATS 294
Query: 202 CQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSL 261
T PS A T PS A T PS A T PS A T PS
Sbjct: 295 EAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSG 354
Query: 262 SRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQI 321
A T PS A T PS A T PS A T PS A
Sbjct: 355 DDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAA 414
Query: 322 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 381
T PS A T PS A T PS A T PS A T PS A
Sbjct: 415 TGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDA 474
Query: 382 GKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSP 441
T PS A T PS A T PS A T PS A T P
Sbjct: 475 TSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGP 534
Query: 442 SLSRA 446
S A
Sbjct: 535 SGDDA 539
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 132/425 (31%)
Query: 35 ITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSR 94
T PS A T PS A T PS A T PS A T PS
Sbjct: 115 ATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDD 174
Query: 95 AGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 154
A T PS A T PS A T PS A T PS A T
Sbjct: 175 ATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATG 234
Query: 155 PSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGK 214
PS A T PS A T PS A T PS A T PS A
Sbjct: 235 PSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATS 294
Query: 215 CQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSL 274
T PS A T PS A T PS A T PS A T PS
Sbjct: 295 EAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSG 354
Query: 275 SRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQI 334
A T PS A T PS A T PS A T PS A
Sbjct: 355 DDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAA 414
Query: 335 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 394
T PS A T PS A T PS A T PS A T PS A
Sbjct: 415 TGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDA 474
Query: 395 GKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSP 454
T PS A T PS A T PS A T PS A T P
Sbjct: 475 TSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGP 534
Query: 455 SLSRA 459
S A
Sbjct: 535 SGDDA 539
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 132/425 (31%)
Query: 48 ITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSR 107
T PS A T PS A T PS A T PS A T PS
Sbjct: 115 ATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDD 174
Query: 108 AGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 167
A T PS A T PS A T PS A T PS A T
Sbjct: 175 ATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATG 234
Query: 168 PSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGK 227
PS A T PS A T PS A T PS A T PS A
Sbjct: 235 PSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATS 294
Query: 228 CQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSL 287
T PS A T PS A T PS A T PS A T PS
Sbjct: 295 EAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSG 354
Query: 288 SRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQI 347
A T PS A T PS A T PS A T PS A
Sbjct: 355 DDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAA 414
Query: 348 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 407
T PS A T PS A T PS A T PS A T PS A
Sbjct: 415 TGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDA 474
Query: 408 GKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSP 467
T PS A T PS A T PS A T PS A T P
Sbjct: 475 TSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGP 534
Query: 468 SLSRA 472
S A
Sbjct: 535 SGDDA 539
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 132/425 (31%)
Query: 61 ITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSR 120
T PS A T PS A T PS A T PS A T PS
Sbjct: 115 ATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDD 174
Query: 121 AGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 180
A T PS A T PS A T PS A T PS A T
Sbjct: 175 ATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATG 234
Query: 181 PSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGK 240
PS A T PS A T PS A T PS A T PS A
Sbjct: 235 PSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATS 294
Query: 241 CQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSL 300
T PS A T PS A T PS A T PS A T PS
Sbjct: 295 EAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSG 354
Query: 301 SRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQI 360
A T PS A T PS A T PS A T PS A
Sbjct: 355 DDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAA 414
Query: 361 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 420
T PS A T PS A T PS A T PS A T PS A
Sbjct: 415 TGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDA 474
Query: 421 GKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSP 480
T PS A T PS A T PS A T PS A T P
Sbjct: 475 TSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGP 534
Query: 481 SLSRA 485
S A
Sbjct: 535 SGDDA 539
>sp|Q6B4J5|EXSA_BACCE Spore coat assembly protein ExsA OS=Bacillus cereus GN=exsA PE=2
SV=1
Length = 643
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 8 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 67
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 68 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 127
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 128 SPSLSRAGKC--QITSPSL 144
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 21 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 80
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 81 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 140
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 141 SPSLSRAGKC--QITSPSL 157
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 34 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 93
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 94 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 153
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 154 SPSLSRAGKC--QITSPSL 170
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 47 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 106
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 107 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 166
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 167 SPSLSRAGKC--QITSPSL 183
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 60 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 119
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 120 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 179
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 180 SPSLSRAGKC--QITSPSL 196
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 73 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 132
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 133 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 192
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 193 SPSLSRAGKC--QITSPSL 209
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 86 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 145
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 146 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 205
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 206 SPSLSRAGKC--QITSPSL 222
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 99 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 158
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 159 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 218
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 219 SPSLSRAGKC--QITSPSL 235
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 112 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 171
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 172 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 231
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 232 SPSLSRAGKC--QITSPSL 248
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 125 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 184
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 185 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 244
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 245 SPSLSRAGKC--QITSPSL 261
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 138 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 197
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 198 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 257
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 258 SPSLSRAGKC--QITSPSL 274
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 151 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 210
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 211 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 270
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 271 SPSLSRAGKC--QITSPSL 287
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 164 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 223
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 224 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 283
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 284 SPSLSRAGKC--QITSPSL 300
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 177 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 236
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 237 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 296
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 297 SPSLSRAGKC--QITSPSL 313
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 190 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 249
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 250 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 309
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 310 SPSLSRAGKC--QITSPSL 326
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 203 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 262
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 263 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 322
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 323 SPSLSRAGKC--QITSPSL 339
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 216 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 275
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 276 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 335
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 336 SPSLSRAGKC--QITSPSL 352
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 229 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 288
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 289 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 348
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 349 SPSLSRAGKC--QITSPSL 365
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 242 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 301
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 302 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 361
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 362 SPSLSRAGKC--QITSPSL 378
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 255 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 314
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 315 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 374
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 375 SPSLSRAGKC--QITSPSL 391
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 268 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 327
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 328 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 387
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 388 SPSLSRAGKC--QITSPSL 404
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 281 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 340
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 341 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 400
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 401 SPSLSRAGKC--QITSPSL 417
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 294 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 353
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 354 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 413
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 414 SPSLSRAGKC--QITSPSL 430
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 307 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 366
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 367 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 426
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 427 SPSLSRAGKC--QITSPSL 443
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 320 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 379
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 380 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 439
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 440 SPSLSRAGKC--QITSPSL 456
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 333 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 392
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 393 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 452
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 453 SPSLSRAGKC--QITSPSL 469
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 346 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 405
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 406 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 465
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 466 SPSLSRAGKC--QITSPSL 482
SP++S+ Q+ P++
Sbjct: 328 SPNVSKENVVIPQVIPPNI 346
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Query: 359 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 418
++ +P +S+ I SP + K I SP + + I SP + + I SP +
Sbjct: 211 ELIAPQISKMKPNNIISP---QTKKNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVK 267
Query: 419 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 478
+ I SP + + I SP + + I SP + + I SP + + I
Sbjct: 268 KENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIV 327
Query: 479 SPSLSRAG 486
SP++S+
Sbjct: 328 SPNVSKEN 335
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 6 KCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPS 65
K I SP + + I SP + + I SP + + I SP + + I SP
Sbjct: 232 KNNIISPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPQ 291
Query: 66 LSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKC--QITSPSL 118
+ + I SP + + I SP + + I SP++S+ Q+ P++
Sbjct: 292 VKKENVGNIVSPQVKKENVGNIVSPQVKKENVGNIVSPNVSKENVVIPQVIPPNI 346
>sp|Q5ZIJ0|BUD13_CHICK BUD13 homolog OS=Gallus gallus GN=BUD13 PE=2 SV=1
Length = 559
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 23 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 82
SP S + + SP LS + + S SL + Q SP LS + + SP LS
Sbjct: 123 DSPDNSPPRRVRHDSPDLSPPRQERNNSASLLPRKERQHGSPDLSPPRRKRHDSPDLSPP 182
Query: 83 -GKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 141
K SP LS + + SP LS + + SP LS + + SP S K + S
Sbjct: 183 RRKRHDDSPDLSPPRRKRHDSPDLSPPRRKRHDSPDLSPPRRQRHDSPDPSPPRKKRHDS 242
Query: 142 PSLSRAGKCQITSPSLS-----RAGKCQITSPSL 170
P LS + Q T+P LS R +SPSL
Sbjct: 243 PDLS--PQEQQTTPDLSLQRKKRYDSDPDSSPSL 274
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 62 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 121
SP S + + SP LS + + S SL + Q SP LS + + SP LS
Sbjct: 123 DSPDNSPPRRVRHDSPDLSPPRQERNNSASLLPRKERQHGSPDLSPPRRKRHDSPDLSPP 182
Query: 122 G-KCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 180
K SP LS + + SP LS + + SP LS + + SP S K + S
Sbjct: 183 RRKRHDDSPDLSPPRRKRHDSPDLSPPRRKRHDSPDLSPPRRQRHDSPDPSPPRKKRHDS 242
Query: 181 PSLSRAGKCQITSPSLS-----RAGKCQITSPSL 209
P LS + Q T+P LS R +SPSL
Sbjct: 243 PDLS--PQEQQTTPDLSLQRKKRYDSDPDSSPSL 274
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 179 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 238
SP S + + SP LS + + S SL + Q SP LS + + SP LS
Sbjct: 123 DSPDNSPPRRVRHDSPDLSPPRQERNNSASLLPRKERQHGSPDLSPPRRKRHDSPDLSPP 182
Query: 239 G-KCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 297
K SP LS + + SP LS + + SP LS + + SP S K + S
Sbjct: 183 RRKRHDDSPDLSPPRRKRHDSPDLSPPRRKRHDSPDLSPPRRQRHDSPDPSPPRKKRHDS 242
Query: 298 PSLSRAGKCQITSPSLS-----RAGKCQITSPSL 326
P LS + Q T+P LS R +SPSL
Sbjct: 243 PDLS--PQEQQTTPDLSLQRKKRYDSDPDSSPSL 274
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Query: 296 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 355
SP S + + SP LS + + S SL + Q SP LS + + SP LS
Sbjct: 123 DSPDNSPPRRVRHDSPDLSPPRQERNNSASLLPRKERQHGSPDLSPPRRKRHDSPDLSPP 182
Query: 356 G-KCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 414
K SP LS + + SP LS + + SP LS + + SP S K + S
Sbjct: 183 RRKRHDDSPDLSPPRRKRHDSPDLSPPRRKRHDSPDLSPPRRQRHDSPDPSPPRKKRHDS 242
Query: 415 PSLSRAGKCQITSPSLS-----RAGKCQITSPSL 443
P LS + Q T+P LS R +SPSL
Sbjct: 243 PDLS--PQEQQTTPDLSLQRKKRYDSDPDSSPSL 274
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 348 TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 407
SP S + + SP LS + + S SL + Q SP LS + + SP LS
Sbjct: 123 DSPDNSPPRRVRHDSPDLSPPRQERNNSASLLPRKERQHGSPDLSPPRRKRHDSPDLSPP 182
Query: 408 G-KCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITS 466
K SP LS + + SP LS + + SP LS + + SP S K + S
Sbjct: 183 RRKRHDDSPDLSPPRRKRHDSPDLSPPRRKRHDSPDLSPPRRQRHDSPDPSPPRKKRHDS 242
Query: 467 PSLSRAGKCQITSPSLS 483
P LS + Q T+P LS
Sbjct: 243 PDLS--PQEQQTTPDLS 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.122 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,401,183
Number of Sequences: 539616
Number of extensions: 7082674
Number of successful extensions: 14795
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 13398
Number of HSP's gapped (non-prelim): 280
length of query: 488
length of database: 191,569,459
effective HSP length: 121
effective length of query: 367
effective length of database: 126,275,923
effective search space: 46343263741
effective search space used: 46343263741
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)