Query psy2852
Match_columns 488
No_of_seqs 3 out of 5
Neff 1.3
Searched_HMMs 29240
Date Fri Aug 16 18:32:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v33_A E1 envelope glycoprotei 3.6 2.9E+02 0.0098 22.9 0.6 12 197-208 32-43 (91)
2 3j20_J 30S ribosomal protein S 0.8 1.8E+03 0.06 18.6 0.8 10 197-206 103-112 (127)
3 3bbo_I Ribosomal protein L6; l 0.6 2.4E+03 0.083 19.0 1.1 13 1-13 43-55 (223)
4 3h31_A High potential iron-sul 0.6 3.9E+03 0.13 15.0 1.9 34 83-116 36-71 (74)
5 2yew_B E1 envelope glycoprotei 0.6 6.7E+03 0.23 17.9 4.1 54 171-229 317-372 (427)
6 1pqh_A Aspartate 1-decarboxyla 0.6 1.7E+03 0.057 19.5 -0.4 24 100-123 32-55 (143)
7 3j0f_E E1 envelope glycoprotei 0.5 3E+03 0.1 20.7 1.1 25 197-221 310-334 (439)
8 3j0c_A E1 envelope glycoprotei 0.5 3.1E+03 0.1 20.7 1.1 25 197-221 310-334 (442)
9 3n40_F E1 envelope glycoprotei 0.5 2.9E+03 0.098 20.6 0.8 25 197-221 312-336 (393)
10 1isu_A High potential iron sul 0.5 4.4E+03 0.15 14.2 1.6 34 434-467 23-60 (62)
No 1
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=3.57 E-value=2.9e+02 Score=22.90 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=6.6
Q ss_pred cccccceecCcc
Q psy2852 197 SRAGKCQITSPS 208 (488)
Q Consensus 197 S~AGK~~itsps 208 (488)
+++|||+|-|+|
T Consensus 32 ~k~GkCaVHs~S 43 (91)
T 2v33_A 32 NKNGDCSVHSHS 43 (91)
T ss_dssp SSCEEEEEECCC
T ss_pred CCCccceeeccC
Confidence 455666665553
No 2
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=0.81 E-value=1.8e+03 Score=18.64 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=6.1
Q ss_pred cccccceecC
Q psy2852 197 SRAGKCQITS 206 (488)
Q Consensus 197 S~AGK~~its 206 (488)
+..||++|||
T Consensus 103 te~G~a~vts 112 (127)
T 3j20_J 103 TEIGKAKVTS 112 (127)
T ss_dssp BSSSEEEECS
T ss_pred EcCceEEEec
Confidence 4556666665
No 3
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=0.64 E-value=2.4e+03 Score=18.96 Aligned_cols=13 Identities=54% Similarity=0.634 Sum_probs=0.0
Q ss_pred CCCCccceecCcc
Q psy2852 1 MSRAGKCQITSPS 13 (488)
Q Consensus 1 msragkcqitsps 13 (488)
|||-||-.|+-|.
T Consensus 43 mSrigk~pI~IP~ 55 (223)
T 3bbo_I 43 ESRIGKQPIAVPS 55 (223)
T ss_dssp CCCCCCCCCCCST
T ss_pred cccccccceecCC
No 4
>3h31_A High potential iron-sulfur protein; electron transport, metal-binding transport; 1.00A {Rhodothermus marinus} SCOP: g.35.1.1
Probab=0.58 E-value=3.9e+03 Score=14.96 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=0.0
Q ss_pred cceecccc--ccccccceeccccccCcccceecccc
Q psy2852 83 GKCQITSP--SLSRAGKCQITSPSLSRAGKCQITSP 116 (488)
Q Consensus 83 G~C~I~~~--~~S~AG~C~I~~~~~~~AG~C~I~~~ 116 (488)
+.|++-++ .-...|-|.|---..++.|-|..-.+
T Consensus 36 ~nC~~f~~~~~~~~~G~C~lf~G~V~~~GWC~aw~~ 71 (74)
T 3h31_A 36 ANCQLYVPAESPDQCGGCQLIKGPIHPNGYCTSWVQ 71 (74)
T ss_dssp GGBTTEECCSSTTSCBEESSSCSCBCTTCBCTTCCB
T ss_pred ccccCccCCCCCCCcCCCceeCceeCCCeehHHhhc
No 5
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=0.58 E-value=6.7e+03 Score=17.93 Aligned_cols=54 Identities=20% Similarity=0.453 Sum_probs=0.0
Q ss_pred ccccccccccccccccCcccccccccccccccee--cCcccccCcceeecCcccccCccee
Q psy2852 171 SRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQI--TSPSLSRAGKCQITSPSLSRAGKCQ 229 (488)
Q Consensus 171 S~AG~C~I~~~~~S~AG~C~~~~~~~S~AGK~~i--tspslsragkcqitspslsragkcq 229 (488)
+++|+|++. |..-.=+-..-+.-..|+..+ ++.+.+-.-+-||-+--..= |+|.
T Consensus 317 ~k~GkCaVH----S~~atl~Es~v~v~~~g~~t~hFSTas~~~~F~v~iC~~~~tC-a~C~ 372 (427)
T 2yew_B 317 NKVGKCAIS----SNSATMKDSVQDVQESGALSLFFATSSVEPNFVVQVCNARITC-GKCE 372 (427)
T ss_dssp CCCBCCCCC----CSSCCCSCCCCCBCSCCSEEEECCTTSSCSCBCCEETTEECCB-CCCC
T ss_pred CCCccCccc----cceeEeeeeeEEEeccceEEEEEecCCCCCCEEEEecccccee-cCCC
No 6
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=0.58 E-value=1.7e+03 Score=19.48 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=0.0
Q ss_pred ccccccCcccceeccccccccccc
Q psy2852 100 ITSPSLSRAGKCQITSPSLSRAGK 123 (488)
Q Consensus 100 I~~~~~~~AG~C~I~~~~~S~AG~ 123 (488)
+|+++|+--|-|.|...-+.+||.
T Consensus 32 VT~AdL~Y~GSITID~dLldaAgI 55 (143)
T 1pqh_A 32 VTHADLHYEGTCAIDQDFLDAAGI 55 (143)
T ss_dssp CCBCCSSSCCCEEEEHHHHHHHTC
T ss_pred EeccccccceeEEECHHHHHHcCC
No 7
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=0.53 E-value=3e+03 Score=20.68 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred cccccceecCcccccCcceeecCcc
Q psy2852 197 SRAGKCQITSPSLSRAGKCQITSPS 221 (488)
Q Consensus 197 S~AGK~~itspslsragkcqitsps 221 (488)
+.-|-.+.-.-.-+|+|||.|-|+|
T Consensus 310 sDfGGvatl~Y~~~k~GkCaVHs~S 334 (439)
T 3j0f_E 310 ADFGGMATLQYVSDREGQCPVHSHS 334 (439)
T ss_pred cCcCceEEEEEecCCCcccceeccC
No 8
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=0.52 E-value=3.1e+03 Score=20.65 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=0.0
Q ss_pred cccccceecCcccccCcceeecCcc
Q psy2852 197 SRAGKCQITSPSLSRAGKCQITSPS 221 (488)
Q Consensus 197 S~AGK~~itspslsragkcqitsps 221 (488)
+.-|-.+.-.-.-+|+|||.|-|+|
T Consensus 310 sDfGGvatl~Y~~~k~GkCaVHs~S 334 (442)
T 3j0c_A 310 SDFGGIATVKYSASKSGKCAVHVPS 334 (442)
T ss_dssp SSCCEEEEEEEEESSCEEEEEECSS
T ss_pred cCcCceEEEEEecCCCcccceeccC
No 9
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=0.51 E-value=2.9e+03 Score=20.56 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=0.0
Q ss_pred cccccceecCcccccCcceeecCcc
Q psy2852 197 SRAGKCQITSPSLSRAGKCQITSPS 221 (488)
Q Consensus 197 S~AGK~~itspslsragkcqitsps 221 (488)
+.-|-.+.-.=.-+|+|||-|-|+|
T Consensus 312 sDfGGvat~~Y~~~k~GkCaVHs~S 336 (393)
T 3n40_F 312 SDFGGVAIIKYAASKKGKCAVHSMT 336 (393)
T ss_dssp SSCCEEEEEEEEESSCEEEEEEESS
T ss_pred cCcCceEEEEEecCCCcccceeccC
No 10
>1isu_A High potential iron sulfur protein; electron transfer(iron-sulfur protein); 1.50A {Rhodocyclus tenuis} SCOP: g.35.1.1
Probab=0.48 E-value=4.4e+03 Score=14.22 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=0.0
Q ss_pred ccccccc--cccccccccccccc--ccccccceeecCc
Q psy2852 434 GKCQITS--PSLSRAGKCQITSP--SLSRAGKCQITSP 467 (488)
Q Consensus 434 G~C~I~~--~~~S~AG~C~I~~~--~~S~AG~Cqitsp 467 (488)
+.|.+-+ .+-.+.|.|+|-.- ..++.|-|..-++
T Consensus 23 ~nC~~f~pg~~~~~~g~C~vf~G~k~V~~~GWC~a~~~ 60 (62)
T 1isu_A 23 SGCAQFVPGASPTAAGGCKVIPGDNQIAPGGYCDAFIV 60 (62)
T ss_dssp GGBTTEECCSSTTSCBEETTSTTCCCBCTTCBCTTCCB
T ss_pred ccCcCcccCCCCCCCCCCcCCCCCceeCCCceeeeeec
Done!