Query psy2852
Match_columns 488
No_of_seqs 3 out of 5
Neff 1.3
Searched_HMMs 13730
Date Fri Aug 16 18:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2852.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2852hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v33a1 b.1.18.4 (A:293-382) F 3.0 1.6E+02 0.012 22.4 0.6 12 197-208 31-42 (90)
2 d1udka_ g.3.14.1 (A:) Nawaprin 1.2 7.5E+02 0.054 16.3 1.6 10 453-462 27-36 (51)
3 d1ea0a2 c.1.4.1 (A:423-1193) A 0.9 1.2E+03 0.089 22.1 2.5 17 202-218 82-98 (771)
4 d1knxa1 c.98.2.1 (A:1-132) HPr 0.8 7.5E+02 0.055 18.0 0.4 11 385-395 29-39 (132)
5 d2enga_ b.52.1.1 (A:) Endogluc 0.7 1.2E+03 0.086 19.3 1.2 18 193-210 13-30 (210)
6 d1mvja_ g.3.6.1 (A:) Conotoxin 0.6 1.1E+03 0.081 14.0 0.7 7 20-26 8-14 (26)
7 d4cpai_ g.3.2.1 (I:) Carboxype 0.6 1.4E+03 0.1 14.5 0.9 13 452-464 13-25 (37)
8 d1bdfa2 d.181.1.1 (A:53-178) R 0.5 1.6E+03 0.12 16.1 1.4 15 15-29 51-65 (126)
9 d1ofda2 c.1.4.1 (A:431-1239) A 0.5 2.1E+03 0.15 20.5 2.5 11 202-212 70-80 (809)
10 d2rdea1 b.45.2.1 (A:138-247) H 0.5 1.4E+03 0.1 17.3 0.7 13 455-467 25-37 (110)
No 1
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=3.04 E-value=1.6e+02 Score=22.36 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=6.4
Q ss_pred cccccceecCcc
Q psy2852 197 SRAGKCQITSPS 208 (488)
Q Consensus 197 S~AGK~~itsps 208 (488)
+++|||+|-|+|
T Consensus 31 ~k~GkCaVHs~S 42 (90)
T d2v33a1 31 NKNGDCSVHSHS 42 (90)
T ss_dssp SSCEEEEEECCC
T ss_pred CCCccceeEcCC
Confidence 455555555544
No 2
>d1udka_ g.3.14.1 (A:) Nawaprin {Spitting cobra (Naja nigricollis) [TaxId: 8654]}
Probab=1.20 E-value=7.5e+02 Score=16.25 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=5.0
Q ss_pred ccccccccce
Q psy2852 453 SPSLSRAGKC 462 (488)
Q Consensus 453 ~~~~S~AG~C 462 (488)
-.||...-||
T Consensus 27 D~dCpg~~KC 36 (51)
T d1udka_ 27 DSGCPNVQKC 36 (51)
T ss_dssp GGGSSTTCEE
T ss_pred ccCCCCcCee
Confidence 3455555554
No 3
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=0.86 E-value=1.2e+03 Score=22.13 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=8.0
Q ss_pred ceecCcccccCcceeec
Q psy2852 202 CQITSPSLSRAGKCQIT 218 (488)
Q Consensus 202 ~~itspslsragkcqit 218 (488)
+|||.|-+..--.=.++
T Consensus 82 AQVTNPPID~iRE~~Vm 98 (771)
T d1ea0a2 82 SQVTNPPIDSLRERRVM 98 (771)
T ss_dssp CCSSSCCCCTTTTGGGC
T ss_pred cccCCCCccHHHhhccc
Confidence 55555555443333333
No 4
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=0.78 E-value=7.5e+02 Score=17.99 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=5.1
Q ss_pred eecCccccccc
Q psy2852 385 QITSPSLSRAG 395 (488)
Q Consensus 385 qitspslsrAG 395 (488)
.|+.|.+.|.|
T Consensus 29 ~I~~~~inRPg 39 (132)
T d1knxa1 29 VIRVPGLKRVV 39 (132)
T ss_dssp BCCBCSCCBCH
T ss_pred eeccccccchH
Confidence 34444444444
No 5
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}
Probab=0.65 E-value=1.2e+03 Score=19.33 Aligned_cols=18 Identities=33% Similarity=0.494 Sum_probs=14.0
Q ss_pred cccccccccceecCcccc
Q psy2852 193 SPSLSRAGKCQITSPSLS 210 (488)
Q Consensus 193 ~~~~S~AGK~~itspsls 210 (488)
.|+|+=.||+.|+.|-.+
T Consensus 13 KpSCsW~gka~v~~Pv~s 30 (210)
T d2enga_ 13 KPSCGWAKKAPVNQPVFS 30 (210)
T ss_dssp CCGGGSTTSSSBSSCCCC
T ss_pred cccCCCcCcCCCCCcccc
Confidence 477888889988888554
No 6
>d1mvja_ g.3.6.1 (A:) Conotoxin {Conus striatus, S VIb [TaxId: 6493]}
Probab=0.64 E-value=1.1e+03 Score=14.03 Aligned_cols=7 Identities=43% Similarity=0.619 Sum_probs=2.8
Q ss_pred eeecccc
Q psy2852 20 CQITSPS 26 (488)
Q Consensus 20 cqits~~ 26 (488)
|.-||-|
T Consensus 8 crktsyd 14 (26)
T d1mvja_ 8 CRKTSYD 14 (26)
T ss_dssp CCTTTCC
T ss_pred ccccccc
Confidence 3334443
No 7
>d4cpai_ g.3.2.1 (I:) Carboxypeptidase A inhibitor {Potato [TaxId: 4113]}
Probab=0.56 E-value=1.4e+03 Score=14.53 Aligned_cols=13 Identities=38% Similarity=0.266 Sum_probs=6.6
Q ss_pred cccccccccceee
Q psy2852 452 TSPSLSRAGKCQI 464 (488)
Q Consensus 452 ~~~~~S~AG~Cqi 464 (488)
++.|||-+-.||-
T Consensus 13 t~ddcsg~~fcqa 25 (37)
T d4cpai_ 13 THDDCSGAWFCQA 25 (37)
T ss_dssp SSSSSCCCSSCCE
T ss_pred cccCccchHHHHH
Confidence 3445555555553
No 8
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=0.53 E-value=1.6e+03 Score=16.08 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=6.3
Q ss_pred ccCcceeeccccccc
Q psy2852 15 SRAGKCQITSPSLSR 29 (488)
Q Consensus 15 sragkcqits~~~S~ 29 (488)
...|.+.+|..|..-
T Consensus 51 ~~~gp~~VtA~di~~ 65 (126)
T d1bdfa2 51 NKSGIGPVTAADITH 65 (126)
T ss_dssp EEESSEEEEGGGBCC
T ss_pred EecCcccEEEecccC
Confidence 334444444444433
No 9
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}
Probab=0.52 E-value=2.1e+03 Score=20.52 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=5.8
Q ss_pred ceecCcccccC
Q psy2852 202 CQITSPSLSRA 212 (488)
Q Consensus 202 ~~itspslsra 212 (488)
+|||.|-+.+-
T Consensus 70 AQVTNPPID~i 80 (809)
T d1ofda2 70 AQVTNPPIDPL 80 (809)
T ss_dssp CCSSSCCCCTT
T ss_pred ccCCCCCccHH
Confidence 55665555443
No 10
>d2rdea1 b.45.2.1 (A:138-247) Hypothetical protein VCA0042, C-terminal domain {Vibrio cholerae O395 [TaxId: 345073]}
Probab=0.47 E-value=1.4e+03 Score=17.29 Aligned_cols=13 Identities=54% Similarity=0.667 Sum_probs=0.0
Q ss_pred ccccccceeecCc
Q psy2852 455 SLSRAGKCQITSP 467 (488)
Q Consensus 455 ~~S~AG~Cqitsp 467 (488)
|+|+-|-+-+|+|
T Consensus 25 DLSksGCrFvt~p 37 (110)
T d2rdea1 25 DLSRSGCRFITPP 37 (110)
T ss_dssp EECSSEEEEEECT
T ss_pred eccccCceEEcCC
Done!