RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2852
         (488 letters)



>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
           methyltransferase, guanylyltransferase, zinc finger,
           icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
           PDB: 2cse_V
          Length = 1275

 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 8   QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 67
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 68  RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 127
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 128 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 186
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 21  QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 80
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 81  RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 140
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 141 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 199
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 34  QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 93
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 94  RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 153
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 154 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 212
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 47  QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 106
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 107 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 166
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 167 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 225
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 60  QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 119
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 120 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 179
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 180 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 238
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 73  QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 132
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 133 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 192
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 193 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 251
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 86  QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 145
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 146 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 205
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 206 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 264
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 99  QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 158
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 159 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 218
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 219 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 277
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 112 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 171
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 172 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 231
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 232 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 290
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 125 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 184
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 185 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 244
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 245 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 303
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 138 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 197
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 198 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 257
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 258 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 316
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 151 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 210
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 211 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 270
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 271 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 329
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 164 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 223
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 224 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 283
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 284 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 342
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 177 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 236
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 237 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 296
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 297 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 355
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 190 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 249
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 250 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 309
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 310 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 368
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 203 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 262
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 263 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 322
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 323 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 381
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 216 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 275
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 276 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 335
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 336 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 394
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 229 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 288
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 289 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 348
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 349 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 407
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 242 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 301
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 302 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 361
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 362 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 420
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 255 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 314
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 315 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 374
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 375 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 433
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 268 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 327
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 328 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 387
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 388 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 446
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 281 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 340
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 341 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 400
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 401 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 459
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 294 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 353
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 354 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 413
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 414 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 472
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 32.1 bits (72), Expect = 0.44
 Identities = 23/179 (12%), Positives = 43/179 (24%)

Query: 307 QITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLS 366
             T P  S   + +      S     +     +    +        +R       S +  
Sbjct: 41  ATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKD 100

Query: 367 RAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQIT 426
            A +        +   K Q+T          +++              P  +R  +    
Sbjct: 101 EADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSA 160

Query: 427 SPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 485
             S   A      + S     +C + S  L           S    G   +TS  + R 
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219



 Score = 28.3 bits (62), Expect = 6.7
 Identities = 20/159 (12%), Positives = 38/159 (23%)

Query: 2   SRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQI 61
           S     +     +    +        +R       S +   A +        +   K Q+
Sbjct: 61  SVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQV 120

Query: 62  TSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 121
           T          +++              P  +R  +      S   A      + S    
Sbjct: 121 TYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHG 180

Query: 122 GKCQITSPSLSRAGKCQITSPSLSRAGKCQITSPSLSRA 160
            +C + S  L           S    G   +TS  + R 
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRH 219


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.122    0.356 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,277,883
Number of extensions: 373544
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 69
Length of query: 488
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,993,456
Effective search space: 1561441296
Effective search space used: 1561441296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.9 bits)