RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2854
(384 letters)
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 241 bits (617), Expect = 4e-78
Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 19/219 (8%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ +ITGANSG+G TA+ELA+ ATV++ R +G+ A + GQ+ + E
Sbjct: 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA-----GQVEVRE 68
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLL 173
L+L S++ FA VLINNAG+ T +G+E G NH+GHF L
Sbjct: 69 LDLQDLSSVRRFA----DGVSGADVLINNAGIMAVPYAL--TVDGFESQIGTNHLGHFAL 122
Query: 174 TNLLIERIQ-KVVIVGSSLMDRGTIDFDNLN-GEKGFVQKGHSNPAYCNSKLMNYYFGAE 231
TNLL+ R+ +VV V S G I+ ++LN + + AY SKL N F +E
Sbjct: 123 TNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRY----SPWLAYSQSKLANLLFTSE 178
Query: 232 LYLKYADKGVDVSVVC--PGWCYTNLFRHADIKFYQKVM 268
L + G + + PG+ +TNL + K +M
Sbjct: 179 LQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALM 217
Score = 74.2 bits (183), Expect = 4e-15
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 276 VVIVGSSLMDRGTIDFDNLN-GEKGFVQKGHSNPAYCNSKLMNYYFGAELYLKYADKGVD 334
VV V S G I+ ++LN + + AY SKL N F +EL + G
Sbjct: 134 VVTVSSMAHWPGRINLEDLNWRSRRY----SPWLAYSQSKLANLLFTSELQRRLTAAGSP 189
Query: 335 VCVVC--PGWCYTNLFRHADIKFYQKVMIFPIAMMYMRSANQ 374
+ + PG+ +TNL + K +M + A+
Sbjct: 190 LRALAAHPGYSHTNLQGASGRKLGDALM-SAATRVVATDADF 230
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 213 bits (545), Expect = 2e-67
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 35/240 (14%)
Query: 56 GKVCIITGANSGIGYETAKELAKLK-ATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
V ++TG N GIG ++L +L VVL R + RGQ A+++L+ E +L
Sbjct: 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQL 61
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLLT 174
++ SI+ + K+Y + VL+NNAG++ + + EV N G +
Sbjct: 62 DIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVC 121
Query: 175 NLLIERIQK---VVIVGSSL----------MDRGTIDFDNLNGEKGFV------------ 209
L+ I+ VV V S + + + + E+
Sbjct: 122 TELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 181
Query: 210 ---QKGHSNPAYCNSKLMN----YYFGAELYLKYADKGVDVSVVCPGWCYTNLFRHADIK 262
++G + AY +K+ +L + + ++ CPGW T++ K
Sbjct: 182 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATK 241
Score = 54.7 bits (132), Expect = 1e-08
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 283 LMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN----YYFGAELYLKYADKGVDVCVV 338
LM++ D +K +G + AY +K+ +L + + +
Sbjct: 170 LMNKFVEDTKKGVHQK----EGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNAC 225
Query: 339 CPGWCYTNLFRHADIK 354
CPGW T++ K
Sbjct: 226 CPGWVRTDMAGPKATK 241
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 163 bits (414), Expect = 1e-47
Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 66/272 (24%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ + ++TG N GIG+E K+L+ VVL CR + +G EA+EKLK + +V +
Sbjct: 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHE-NVVFHQ 68
Query: 114 LNLAS-FDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKE--------------------- 151
L++ ++ + A + + K+ +L+NNAGV+ +
Sbjct: 69 LDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKI 128
Query: 152 ---------KLTTKEGYEVHFGINHVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTI 197
T E E IN+ G +T +LI +Q +V V SS +
Sbjct: 129 YEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYV 188
Query: 198 ----------DFDNLNGEK---------------GFVQKGHSN--PAYCNSKLMNYYFGA 230
D D L E+ G + AY SK +
Sbjct: 189 SNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR 248
Query: 231 ELYLKYADKGVDVSVVCPGWCYTNLFRHADIK 262
L K V+ VCPG T +
Sbjct: 249 VLANKI--PKFQVNCVCPGLVKTEMNYGIGNY 278
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 120 bits (304), Expect = 7e-32
Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 36/257 (14%)
Query: 35 RYFKSRSWSKLKASPFY-KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRG 93
++ + F + ++GK I+TGA+ GIG E A LAK+ A VV+ RS
Sbjct: 6 QHQHQHQHQQPLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARS---- 61
Query: 94 QEALEKLKKEVQD---GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--P 148
+E L+K+ + + + + F K + +LI N +
Sbjct: 62 KETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN 121
Query: 149 IKEKLTTKEGYEVHFGINHVGHFLLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNG 204
+ +N + + +LT + +++ +V+V S L G
Sbjct: 122 LFH--DDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSS------------LAG 167
Query: 205 EKGFVQKGHSNPAYCNSK--LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFRHADIK 262
+ + + AY SK L ++ + V +++ G T A
Sbjct: 168 KVAY--PMVA--AYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSG 223
Query: 263 FYQKVMIFP--IAMMVV 277
A+ ++
Sbjct: 224 IVHMQAAPKEECALEII 240
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 309 AYCNSK--LMNYYFGAELYLKYADKGVDVCVVCPGWCYTNLFRHADIKFYQKVMI 361
AY SK L ++ + V + + G T A
Sbjct: 176 AYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAA 230
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 118 bits (299), Expect = 1e-31
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 35/223 (15%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKAT--VVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
M ++TGAN GIG ++L K K ++ R + + E K ++D ++ +
Sbjct: 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL-----KSIKDSRVHV 55
Query: 112 MELNLASFDSIKNFAKNVMKQY--PKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHV 168
+ L + S+ F V + + +LINNAGV + + +N
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTT 115
Query: 169 GHFLLTNLLIERIQK---------------VVIVGSSLMDRGTIDFDNLNGEKGFVQKGH 213
LLT L+ ++ VI SS + G+I DN +G F
Sbjct: 116 SVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL--GSIT-DNTSGSAQF----- 167
Query: 214 SNPAYCNSKL-MNYYFGAELYLKYADKGVDVSVVCPGWCYTNL 255
AY SK +N FG L + D V V CPGW TNL
Sbjct: 168 PVLAYRMSKAAIN-MFGRTLAVDLKDDNVLVVNFCPGWVQTNL 209
Score = 38.5 bits (90), Expect = 0.002
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 255 LFRHADIKFYQKVMIFPIAMMVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK 314
L ++A K + A ++ I SS + G+I DN +G F AY SK
Sbjct: 127 LLKNAASKESGDQLSVSRAAVITI--SSGL--GSIT-DNTSGSAQF-----PVLAYRMSK 176
Query: 315 L-MNYYFGAELYLKYADKGVDVCVVCPGWCYTNL 347
+N FG L + D V V CPGW TNL
Sbjct: 177 AAINM-FGRTLAVDLKDDNVLVVNFCPGWVQTNL 209
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 113 bits (284), Expect = 4e-29
Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
K + G++ +ITGA GIG TA E AKLK+ +VL + + LE+ + + ++
Sbjct: 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN----KHGLEETAAKCKGLGAKV 82
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINH 167
++ ++ + I + AK V + + +L+NNAGV + T E F +N
Sbjct: 83 HTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFA--TQDPQIEKTFEVNV 140
Query: 168 VGHFLLTNL----LIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFV-QKGHSNPAYCNSK 222
+ HF T + + ++ +S G V AYC+SK
Sbjct: 141 LAHFWTTKAFLPAMTKNNHGHIVTVASAA--------------GHVSVPFLL--AYCSSK 184
Query: 223 LMNYYFGA---------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFY 264
F A EL GV + +CP + T ++
Sbjct: 185 -----FAAVGFHKTLTDELA-ALQITGVKTTCLCPNFVNTGFIKNPSTSLG 229
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 15/57 (26%)
Query: 309 AYCNSKLMNYYFGA---------ELYLKYADKGVDVCVVCPGWCYTNLFRHADIKFY 356
AYC+SK F A EL GV +CP + T ++
Sbjct: 179 AYCSSK-----FAAVGFHKTLTDELA-ALQITGVKTTCLCPNFVNTGFIKNPSTSLG 229
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 111 bits (280), Expect = 1e-28
Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 38/221 (17%)
Query: 57 KVCIITGANSGIGYETAKELAKLKA---TVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ITG N G+G K L L + CR+ + +E LE L K I ++E
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAK--NHSNIHILE 78
Query: 114 LNLASFDSIKNFAKNV--MKQYPKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHVGH 170
++L +FD+ ++ + + ++VL NNAG++ + N V
Sbjct: 79 IDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 138
Query: 171 FLLTNLLIERIQK---------------VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSN 215
+L + ++K +I SS++ G+I N +G
Sbjct: 139 IMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL--GSIQ-GNTDG---------GM 186
Query: 216 PAYCNSKL-MNYYFGAELYLKYADKGVDVSVVCPGWCYTNL 255
AY SK +N L + + + + PGW T++
Sbjct: 187 YAYRTSKSALN-AATKSLSVDLYPQRIMCVSLHPGWVKTDM 226
Score = 34.6 bits (80), Expect = 0.039
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 255 LFRHADIKFYQKVMIFPIAMMVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK 314
L + A + M A ++ + SS++ G+I N +G AY SK
Sbjct: 148 LLKKAAKANESQPMGVGRAAIINM--SSIL--GSIQ-GNTDG---------GMYAYRTSK 193
Query: 315 L-MNYYFGAELYLKYADKGVDVCVVCPGWCYTNL 347
+N L + + + + PGW T++
Sbjct: 194 SALNA-ATKSLSVDLYPQRIMCVSLHPGWVKTDM 226
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 112 bits (282), Expect = 2e-28
Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 41/230 (17%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
K G+ +TG +G+G ++L V + +AL L+ E +++
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVG 169
++L++AS + K A V ++ + +L NNAGV++ PI+E ++ + ++ G+N G
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEE--SSYDDWDWLLGVNLHG 121
Query: 170 HFLLTN----LLIERIQKVVIVG------SSLMDRGTIDFDNLNGEKGFV-QKGHSNPAY 218
++ER++ G +S+ F+ Y
Sbjct: 122 VVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA--------------AFLAAGSPG--IY 165
Query: 219 CNSKLMNYYFG----AE-LYLKYADKGVDVSVVCPGWCYTNLFRHADIKF 263
+K F +E L+ + VSV+CPG + ++ DI+
Sbjct: 166 NTTK-----FAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRP 210
Score = 35.9 bits (83), Expect = 0.018
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 308 PAYCNSKLMNYYFG----AE-LYLKYADKGVDVCVVCPGWCYTNLFRHADIKF 355
Y +K F +E L+ + V V+CPG + ++ DI+
Sbjct: 163 GIYNTTK-----FAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRP 210
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 110 bits (276), Expect = 9e-28
Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 40/223 (17%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
+G+ ++TG SGIG TA E A+ A +VL ++A+ L+ Q
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG--QGFDAHG 84
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVG 169
+ ++ D + A + + V+ +NAG+ V P+ + + + I+ G
Sbjct: 85 VVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQ--MNHDDWRWVIDIDLWG 142
Query: 170 HFLLTNLLIERIQK------VVIVGSSLMDRGTIDFDNLNGEKGFV-QKGHSNPAYCNSK 222
+ R+ + + S G V G Y +K
Sbjct: 143 SIHAVEAFLPRLLEQGTGGHIAFTASFA---------------GLVPNAGLG--TYGVAK 185
Query: 223 LMNYYFG----AE-LYLKYADKGVDVSVVCPGWCYTNLFRHAD 260
+G AE L + G+ VSV+CP T L +++
Sbjct: 186 -----YGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSE 223
Score = 37.0 bits (86), Expect = 0.008
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 308 PAYCNSKLMNYYFG----AE-LYLKYADKGVDVCVVCPGWCYTNLFRHAD 352
Y +K +G AE L + G+ V V+CP T L +++
Sbjct: 179 GTYGVAK-----YGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSE 223
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 106 bits (266), Expect = 7e-27
Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 47/222 (21%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
M I+TGA SG+G L + V + R + L++ + + ++ +
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRR----YQRLQQQELLL-GNAVIGIV 55
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
+LA + + ++ ++++ AG P+ T E N V
Sbjct: 56 ADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGV--YTAEQIRRVMESNLVSTI 113
Query: 172 LLTN----LLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L+ L+ ER + V SS + G S YC SK
Sbjct: 114 LVAQQTVRLIGERGGVLANVLSSA------------AQVGK--ANES--LYCASK----- 152
Query: 228 FG---------AELYLKYADKGVDVSVVCPGWCYTNLFRHAD 260
+G AEL D + + + P + + + D
Sbjct: 153 WGMRGFLESLRAEL----KDSPLRLVNLYPSGIRSEFWDNTD 190
Score = 32.9 bits (76), Expect = 0.11
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 18/53 (33%)
Query: 309 AYCNSKLMNYYFG---------AELYLKYADKGVDVCVVCPGWCYTNLFRHAD 352
YC SK +G AEL D + + + P + + + D
Sbjct: 147 LYCASK-----WGMRGFLESLRAEL----KDSPLRLVNLYPSGIRSEFWDNTD 190
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 105 bits (263), Expect = 6e-26
Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 37/226 (16%)
Query: 48 SPFYKPM---EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKE- 103
P M GK IITG+++GIG A AK A V + R+ R +E +++ K
Sbjct: 15 VPRGSHMARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG 74
Query: 104 VQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLT--TKEGYEV 161
V +I + ++ + + ++ KI +L+NNAG ++ T E Y+
Sbjct: 75 VPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQK 134
Query: 162 HFGINHVGHFLLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPA 217
F +N +T E + K +V V S + G + P
Sbjct: 135 TFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSI-----------VAGPQAHSG----YPY 179
Query: 218 YCNSKLMNYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
Y +K A + GV V+ V PG T
Sbjct: 180 YACAK------AALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMG 219
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 103 bits (259), Expect = 1e-25
Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 45/228 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLK---ATVVLGCRSMIRGQEALEKLKKEVQ----D 106
+ VC++TGA+ G G A +LA+L + +++ RS + L +LK+E+ D
Sbjct: 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARS----ESMLRQLKEELGAQQPD 59
Query: 107 GQIVLMELNLASFDSIKNFAKNVMKQYP----KIHVLINNAGVSVPIKE---KLTTKEGY 159
++VL +L + ++ V + + +LINNA + + +
Sbjct: 60 LKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEV 119
Query: 160 EVHFGINHVGHFLLTNLLIERIQK-------VVIVGSSLMDRGTIDFDNLNGEKGFVQKG 212
++ +N LT+ + Q VV + S L + + KG
Sbjct: 120 NNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS------------LCALQPY--KG 165
Query: 213 HSNPAYCNSK-LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
YC K + + L + V V PG ++ + A
Sbjct: 166 WG--LYCAGKAARDMLYQV---LAAEEPSVRVLSYAPGPLDNDMQQLA 208
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 103 bits (258), Expect = 1e-25
Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD-----GQ 108
+ + IITGA+ GIG A LA VVL RS ++ LEK+ E+ +
Sbjct: 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARS----KQNLEKVHDEIMRSNKHVQE 60
Query: 109 IVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHV 168
+++ L++ K++ ++Y + +L+N A + + + IN +
Sbjct: 61 PIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMF-MDGSLSEPVDNFRKIMEINVI 119
Query: 169 GHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKL 223
+ + + E ++ + V S + GF Y ++K
Sbjct: 120 AQYGILKTVTEIMKVQKNGYIFNVAS------------RAAKYGF--ADGGI--YGSTK- 162
Query: 224 MNYYFGAE-----LYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFP--IAMMV 276
F LY + A G+ V+ +CPGW T++ + A F + MI P + +
Sbjct: 163 ----FALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLLNTI 218
Query: 277 V 277
Sbjct: 219 R 219
Score = 30.2 bits (69), Expect = 0.81
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 329 ADKGVDVCVVCPGWCYTNLFRHADIKFYQKVMIFP--IA 365
A G+ V +CPGW T++ + A F + MI P +
Sbjct: 177 APLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQPDDLL 215
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 101 bits (253), Expect = 9e-25
Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 36/220 (16%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKE-VQDGQIVLME 113
KV IITG+++GIG TA A+ A V + R R +E +++ V + + +
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLT----TKEGYEVHFGINHVG 169
++ + + ++ K+ +L+NNAG ++P + T + E Y+ +N
Sbjct: 65 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 124
Query: 170 HFLLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN 225
LT + + +V + S +G P Y +K
Sbjct: 125 VIALTKKAVPHLSSTKGEIVNISSI-----------ASGLHATP----DFPYYSIAK--- 166
Query: 226 YYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
A + G+ V+ + PG T
Sbjct: 167 ---AAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAM 203
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 100 bits (252), Expect = 1e-24
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 34/217 (15%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKE-VQDGQIVLME 113
K IITG+++GIG TA A+ A V + RS R +E + + K V + Q+ +
Sbjct: 5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHF----GINHVG 169
++ + D + +KQ+ KI VL+NNAG ++P T + + +N
Sbjct: 65 ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 124
Query: 170 HFLLTNL----LIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN 225
+T L+ ++V V S + G + Y +K
Sbjct: 125 VIEMTKKVKPHLVASKGEIVNVSSI-----------VAGPQAQP--DFLY--YAIAK--- 166
Query: 226 YYFGAELYLK-----YADKGVDVSVVCPGWCYTNLFR 257
+ Y + A G+ V+ V PG T
Sbjct: 167 --AALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTN 201
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 99.5 bits (249), Expect = 2e-24
Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 50/231 (21%)
Query: 51 YKPM----EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD 106
Y+P ++ ++TGA+ GIG E A A+ ATV+L R+ +E L ++ + +
Sbjct: 3 YQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRN----EEKLRQVASHINE 58
Query: 107 -----GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKLTTKEG 158
Q +++L + ++ + A+ + YP++ +++NAG+ P+ E +
Sbjct: 59 ETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSE--QNPQV 116
Query: 159 YEVHFGINHVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGH 213
++ +N F+LT L+ + K +V SS+ G +G G
Sbjct: 117 WQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSV------------GRQGRANWG- 163
Query: 214 SNPAYCNSKLMNYYFGAELYLK-----YADKGVDVSVVCPGWCYTNLFRHA 259
AY SK F E ++ Y + + V+ + PG T + A
Sbjct: 164 ---AYAASK-----FATEGMMQVLADEYQ-QRLRVNCINPGGTRTAMRASA 205
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 99.6 bits (249), Expect = 3e-24
Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 42/218 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ GKV ++TGA GIG A+ L A V L ++ G + L ++ + + + ++
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLL 173
++A +++ + V+ + ++ +L+NNAGV ++ +E IN V
Sbjct: 65 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGV--------NNEKNWEKTLQINLVSVISG 116
Query: 174 TNLLIERIQK------VVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
T L ++ + K +I+ SS L G P YC SK
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSS-----------LAGLMPVA----QQPVYCASK---- 157
Query: 227 YFG-------AELYLKYADKGVDVSVVCPGWCYTNLFR 257
G A L + GV ++ +CPG+ T +
Sbjct: 158 -HGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILE 194
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 99.3 bits (248), Expect = 3e-24
Identities = 47/221 (21%), Positives = 78/221 (35%), Gaps = 32/221 (14%)
Query: 56 GKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELN 115
GKV ++TG + GIG L L V+ + R + L+KLK++ + + +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVA--RSEAPLKKLKEKY-GDRFFYVVGD 58
Query: 116 LASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTK-EGYEVHFGINHVGHFLLT 174
+ +K +K + KI L+ NAGV P++ ++ + IN L
Sbjct: 59 ITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118
Query: 175 NL----LIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFGA 230
+ L + VV V S F G AY +SK
Sbjct: 119 GIALPELKKTNGNVVFVSSD------------ACNMYFSSWG----AYGSSK-----AAL 157
Query: 231 ELY---LKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVM 268
+ L ++ V V PG T++ + M
Sbjct: 158 NHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSM 198
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 98.0 bits (245), Expect = 8e-24
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 36/216 (16%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
+GK I+ G G+G T + L + A V+L R+ + + ++++E ++ +
Sbjct: 7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRN----ESNIARIREEF-GPRVHALRS 61
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
++A + I + I +L NAGVS P + ++ Y+ F +N G F
Sbjct: 62 DIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQ--VSEASYDRQFAVNTKGAFF 119
Query: 173 LTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK----LMN 225
L I++ +V S + E G G S Y SK
Sbjct: 120 TVQRLTPLIREGGSIVFTSS------------VADEGGHP--GMSV--YSASKAALVSFA 163
Query: 226 YYFGAELYLKYADKGVDVSVVCPGWCYTNLFRHADI 261
AEL +G+ V+ V PG+ T A I
Sbjct: 164 SVLAAEL----LPRGIRVNSVSPGFIDTPTKGVAGI 195
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 98.4 bits (246), Expect = 8e-24
Identities = 50/214 (23%), Positives = 80/214 (37%), Gaps = 36/214 (16%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
K+ +ITGA SGIG AK A V + R ++ L+ E+ G V ++
Sbjct: 28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRR----KDVLDAAIAEI-GGGAVGIQA 82
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
+ A+ + + V + +I VL NAG P+ E T+E Y+ F N G
Sbjct: 83 DSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGE--VTEEQYDDTFDRNVKGVLF 140
Query: 173 LTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK----LMN 225
+ + + VV+ GS+ G G S Y SK
Sbjct: 141 TVQKALPLLARGSSVVLTGST------------AGSTGT--PAFS--VYAASKAALRSFA 184
Query: 226 YYFGAELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
+ +L D+G+ ++ + PG T
Sbjct: 185 RNWILDL----KDRGIRINTLSPGPTETTGLVEL 214
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 97.6 bits (244), Expect = 9e-24
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 46/224 (20%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD-----GQI 109
+G+V ++TGA GIG A+ A A+VVL R+ + +L ++ +++ I
Sbjct: 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT----EASLAEVSDQIKSAGQPQPLI 68
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKLTTKEGYEVHFGIN 166
+ + L A+ + A V ++ ++ L++NA + P+++ E + +N
Sbjct: 69 IALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQ--LPDEDFMQVMHVN 126
Query: 167 HVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNS 221
F+LT L+ +++ + SS+ G KG G AY S
Sbjct: 127 VNATFMLTRALLPLLKRSEDASIAFTSSSV------------GRKGRANWG----AYGVS 170
Query: 222 KLMNYYFGAELYLK------YADKGVDVSVVCPGWCYTNLFRHA 259
K F E ++ V + + PG T + A
Sbjct: 171 K-----FATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQA 209
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 97.2 bits (243), Expect = 1e-23
Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 41/237 (17%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD---GQIVL 111
E KV +ITGA+ GIG A+ LA+ + LG RS + LEK+ E+ ++
Sbjct: 1 EMKVAVITGASRGIGEAIARALARDGYALALGARS----VDRLEKIAHELMQEQGVEVFY 56
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVG 169
L+++ +S++ F+K V++++ + V++ NAG+ ++E ++E + +N +G
Sbjct: 57 HHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEE--LSEEEFHEMIEVNLLG 114
Query: 170 HFLLTN----LLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN 225
+ L ++ S + G Y ++K
Sbjct: 115 VWRTLKAFLDSLKRTGGLALVTTSDV---SARLIPYGGG-------------YVSTK--- 155
Query: 226 YYFGAE---LYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFP--IAMMVV 277
+ A + + V + PG T K +K + P IA V
Sbjct: 156 --WAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKPGKPKEKGYLKPDEIAEAVR 210
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 97.0 bits (242), Expect = 2e-23
Identities = 43/220 (19%), Positives = 64/220 (29%), Gaps = 42/220 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ K I A GIG +T++EL K + + AL +LK I
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR-VENPTALAELKAINPKVNITFHT 61
Query: 114 LNL-ASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFL 172
++ K K + Q + +LIN AG+ E IN G
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGI--------LDDHQIERTIAINFTGLVN 113
Query: 173 LTNLLIERIQK-------VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN 225
T +++ K ++ S+ G Q P Y SK
Sbjct: 114 TTTAILDFWDKRKGGPGGIIANICSVT-----------GFNAIHQV----PVYSASK--- 155
Query: 226 YYFGA-----ELYLKYADKGVDVSVVCPGWCYTNLFRHAD 260
L GV + PG T L +
Sbjct: 156 --AAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFN 193
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 96.9 bits (242), Expect = 3e-23
Identities = 52/248 (20%), Positives = 85/248 (34%), Gaps = 43/248 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ KV +I+G +G A+ A+ A +VL R+ E LE + K+V D + +
Sbjct: 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAART----VERLEDVAKQVTDTGRRALS 64
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKLTTKEGYEVHFGINHV 168
+ ++ + + MK Y ++ V+INNA P TT E +
Sbjct: 65 VGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFAN--TTFEHMRDAIELTVF 122
Query: 169 GHFLLTN----LLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLM 224
G L L E VV V S + + G AY +K
Sbjct: 123 GALRLIQGFTPALEESKGAVVNVNS------------MVVRHSQAKYG----AYKMAK-- 164
Query: 225 NYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVI 278
A L + +KG+ V+ V PG+ + + K +
Sbjct: 165 ----SALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAA 220
Query: 279 VGSSLMDR 286
S + R
Sbjct: 221 AAGSDLKR 228
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 96.1 bits (240), Expect = 6e-23
Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 38/220 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+V +ITG SG+G TA LA A + L S + + + + D +++
Sbjct: 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV 70
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS---VPIKEKLTTKEGYEVHFGINHVGH 170
+++ ++ + +++ +I NNAG+ P + T ++ IN G
Sbjct: 71 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTES--FTAAEFDKVVSINLRGV 128
Query: 171 FLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN 225
FL +++ +++ VV S + G +G + Y +K
Sbjct: 129 FLGLEKVLKIMREQGSGMVVNTAS------------VGGIRGIG----NQSGYAAAK--- 169
Query: 226 YYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
++Y G+ ++ + PG +T + ++
Sbjct: 170 ---HGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENS 206
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 95.0 bits (237), Expect = 1e-22
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 38 KSRSWSKLKASPFYKPM---EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQ 94
S K M G+V ++TGA+ GIG A++L L A VVL R
Sbjct: 8 HHHHHSSGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARD----V 63
Query: 95 EALEKLKKEVQD--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
E L +++E+ G+ +L+ D+I FA V+ + + VL+NNAGV
Sbjct: 64 EKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGV 116
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 93.7 bits (234), Expect = 3e-22
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 34/221 (15%)
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIV 110
Y+ ++ KV I+TGA SGIG AK+ A + VV R + +++L+ +++
Sbjct: 2 YQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG--MGKEVL 59
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHVG 169
++ +++ ++ F + + Y +I VL NNAG+ + + E +E +N
Sbjct: 60 GVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYS 119
Query: 170 HFLLTNLLIERIQKV---VIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN 225
F + +I + K VIV +S+ G +G + Y +K
Sbjct: 120 AFYSSRAVIPIMLKQGKGVIVNTASIA-----------GIRGG----FAGAPYTVAK--- 161
Query: 226 YYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHAD 260
+ Y D+G+ V PG TN+ +
Sbjct: 162 ---HGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSS 199
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 93.9 bits (234), Expect = 4e-22
Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 35/216 (16%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
+ M K +ITG+ SGIG A+ LAK A +VL + + G ++
Sbjct: 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV--SVPIKEKLTTKEGYEVHFGINHVG 169
++ I + V ++ +L+NNAGV I++ E ++ +N
Sbjct: 81 HPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIED--FPVEQWDRIIAVNLSS 138
Query: 170 HFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLM 224
F I ++K ++ + S +G K AY +K
Sbjct: 139 SFHTIRGAIPPMKKKGWGRIINIAS------------AHGLVASPFK----SAYVAAK-- 180
Query: 225 NYYFGAE-----LYLKYADKGVDVSVVCPGWCYTNL 255
G + L+ A+ GV V+ +CPG+ T L
Sbjct: 181 ---HGIMGLTKTVALEVAESGVTVNSICPGYVLTPL 213
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 93.4 bits (233), Expect = 7e-22
Identities = 52/241 (21%), Positives = 104/241 (43%), Gaps = 42/241 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
V +ITGA SGIG TA LA TV R+ + +E++ E+ GQ +
Sbjct: 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRT----RTEVEEVADEIVGAGGQAIA 81
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS---VPIKEKLTTKEGYEVHFGINHV 168
+E +++ ++N ++++ ++ + +++ NAG++ PI + ++ +N
Sbjct: 82 LEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDD--LKPFEWDETIAVNLR 139
Query: 169 GHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKL 223
G FL +L + +++ +V+V S +NG + F G + Y +K
Sbjct: 140 GTFLTLHLTVPYLKQRGGGAIVVVSS------------INGTRTFTTPGATA--YTATK- 184
Query: 224 MNYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVV 277
A +L L+ + V+ VCPG TN+ + ++ ++ I
Sbjct: 185 -----AAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQ 239
Query: 278 I 278
+
Sbjct: 240 V 240
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 91.8 bits (229), Expect = 1e-21
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 37/212 (17%)
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQ 108
YK +EGKV +ITG+++G+G A A KA VV+ RS ++ + +E++ G+
Sbjct: 2 YKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS---KEDEANSVLEEIKKVGGE 58
Query: 109 IVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS--VPIKEKLTTKEGYEVHFGIN 166
+ ++ ++ + N ++ +K++ K+ V+INNAG+ V E + + N
Sbjct: 59 AIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHE--MSLSDWNKVIDTN 116
Query: 167 HVGHFLLT----NLLIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNS 221
G FL + +E K ++ SS ++ + + + Y S
Sbjct: 117 LTGAFLGSREAIKYFVENDIKGTVINMSS-----------VHEKIPWP--LFVH--YAAS 161
Query: 222 K----LMNYYFGAELYLKYADKGVDVSVVCPG 249
K LM E YA KG+ V+ + PG
Sbjct: 162 KGGMKLMTETLALE----YAPKGIRVNNIGPG 189
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 91.8 bits (229), Expect = 2e-21
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ KV +ITGA+ GIG A+EL A ++LG R R Q +E + E++D G +
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGAR---R-QARIEAIATEIRDAGGTALA 57
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
L++ S+ FA+ + + +I VL+NNAGV
Sbjct: 58 QVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGV 91
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 91.8 bits (229), Expect = 2e-21
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 40/215 (18%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
+G ++TG + GIGY +ELA L A V R+ E LE +++ +
Sbjct: 20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVC 77
Query: 115 NLASFDSIKNFAKNVMKQYP-KIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
+L S + V + K+++L+NNAGV + K+ T++ Y + G N +
Sbjct: 78 DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKD--FTEKDYNIIMGTNFEAAY 135
Query: 172 LLTNL----LIERIQ-KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
L+ + L V+ + S + G S Y SK
Sbjct: 136 HLSQIAYPLLKASQNGNVIFLSS------------IAGFSALP----SVSLYSASK---- 175
Query: 227 YFGAELYL------KYADKGVDVSVVCPGWCYTNL 255
GA + ++A + V+ V PG T L
Sbjct: 176 --GAINQMTKSLACEWAKDNIRVNSVAPGVILTPL 208
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 91.1 bits (227), Expect = 2e-21
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
++GKV +ITGA+SGIG TA+ LA A V + R R E L L E+ ++
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAAR---R-VEKLRALGDELTAAGAKV 58
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
++EL++A + + ++ + +L+NNAG+
Sbjct: 59 HVLELDVADRQGVDAAVASTVEALGGLDILVNNAGI 94
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 90.8 bits (226), Expect = 3e-21
Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 35/216 (16%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ GA IG E AK+ A TV G R+ E L L E++ G+IV
Sbjct: 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRN----GEKLAPLVAEIEAAGGRIVA 60
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVG 169
L+ + D + F + + V I N G +V PI E TT + + +
Sbjct: 61 RSLDARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILE--TTDRVFRKVWEMACWA 117
Query: 170 HFLLTNLLIERIQKVVIVGSSLMDRGTIDF-DNLNGEKGFVQKGHSNPAYCNSKLMNYYF 228
F+ + +G I F +G A+ ++K F
Sbjct: 118 GFVSGRESARLMLA--------HGQGKIFFTGATASLRGGSGFA----AFASAK-----F 160
Query: 229 GAE-----LYLKYADKGVDVS-VVCPGWCYTNLFRH 258
G + + K + V+ ++ T R
Sbjct: 161 GLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRE 196
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 90.4 bits (225), Expect = 5e-21
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 35/214 (16%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++GKV ++TG+ SGIG A LA A +VL E + +++
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV--SVPIKEKLTTKEGYEVHFGINHVGHF 171
+L+ ++++ N ++Q +I +L+NNAG+ + I++ E ++ +N F
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIED--FPTEKWDAILALNLSAVF 119
Query: 172 LLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
T + ++K ++ + S +G K AY +K
Sbjct: 120 HGTAAALPHMKKQGFGRIINIAS------------AHGLVASANK----SAYVAAK---- 159
Query: 227 YFGAE-----LYLKYADKGVDVSVVCPGWCYTNL 255
G L+ A +G+ + +CPGW T L
Sbjct: 160 -HGVVGFTKVTALETAGQGITANAICPGWVRTPL 192
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 90.7 bits (226), Expect = 5e-21
Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 45/234 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ G++ ++TG + GIG A+ L + A V + R + +L G +
Sbjct: 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY---GDCQAIP 83
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS--VPIKEKLTTKEGYE---------VH 162
+L+S + A+ + + ++ +L+NNAG S ++ G+E V
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALES--YPVSGWEKVMQLNVTSVF 141
Query: 163 FGINHVGHFLLTNLLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK 222
I + L + E +V+ +GS G G AY SK
Sbjct: 142 SCIQQLLPLLRRSASAENPARVINIGSVA---------------GISAMGEQAYAYGPSK 186
Query: 223 LMNYYFGAELYL------KYADKGVDVSVVCPGWCYTNLFRH--ADIKFYQKVM 268
A L + + ++V+V+ PG + + RH D + +
Sbjct: 187 ------AALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADS 234
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 90.7 bits (226), Expect = 5e-21
Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 38/218 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+E KV IITGA GIG ET++ LA+ A VVL A + V
Sbjct: 9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHV 63
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL--TTKEGYEVHFGINHVGHF 171
++L + S++ + + ++ ++ NNA S P + T + ++ F +N G
Sbjct: 64 VDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTM 123
Query: 172 LLTNLLIERIQKV---VIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L+ I R+ IV SS + + AY +K
Sbjct: 124 LMCKYAIPRLISAGGGAIVNISS-----------ATAHAAYD----MSTAYACTK----- 163
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
A + +Y GV + + PG T
Sbjct: 164 -AAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVG 200
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 90.4 bits (225), Expect = 6e-21
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 53 PMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEV-QDGQIVL 111
ITGA SG G A+ A+ ++VL R R +E L+ L E+ +++
Sbjct: 18 SHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGR---R-EERLQALAGELSAKTRVLP 73
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPI 149
+ L++ ++ N+ +++ + LINNAG+++
Sbjct: 74 LTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGT 111
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 90.7 bits (226), Expect = 6e-21
Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 37/217 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+EGK+ I+TGA+SGIG A A+ A VV+ R+ E +++ G+ +
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG--GGEAAALA 63
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS---VPIKEKLTTKEGYEVHFGINHVGH 170
++ + + ++++ + NNAG I + EG+ N
Sbjct: 64 GDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISS--LSVEGWRETLDTNLTSA 121
Query: 171 FLLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
FL + I + SS + G Y SK
Sbjct: 122 FLAAKYQVPAIAALGGGSLTFTSSFV--------------GHTAGFAGVAPYAASK---- 163
Query: 227 YFGA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
L ++ +G+ V+ + PG T
Sbjct: 164 --AGLIGLVQALAVELGARGIRVNALLPGGTDTPANF 198
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 90.3 bits (225), Expect = 6e-21
Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 39/216 (18%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
GKV ++TG GIG + A VV+ + + L++E+ V +
Sbjct: 8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD----ESGGRALEQEL--PGAVFILC 61
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHVGHFLL 173
++ D +K ++++ ++ ++NNAG P + T+ +G+ +N +G + L
Sbjct: 62 DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTL 121
Query: 174 TNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFG 229
T L + ++K V+ + S L G G Q Y +K G
Sbjct: 122 TKLALPYLRKSQGNVINISS------------LVGAIGQAQ----AVPYVATK------G 159
Query: 230 A------ELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
A L L + GV V+ + PG +T L+
Sbjct: 160 AVTAMTKALALDESPYGVRVNCISPGNIWTPLWEEL 195
Score = 27.1 bits (61), Expect = 8.2
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 308 PAYCNSKLMNYYFGA------ELYLKYADKGVDVCVVCPGWCYTNLFRHA 351
Y +K GA L L + GV V + PG +T L+
Sbjct: 152 VPYVATK------GAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEEL 195
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 90.3 bits (225), Expect = 6e-21
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 34/215 (15%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
GKVC++TGA IG TA LA+ + L + ++A ++++ +
Sbjct: 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYV 62
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHVGHFL 172
++ S +++ +V++ + KI L NNAG + + IN G F
Sbjct: 63 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 122
Query: 173 LTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYF 228
+ + ++ ++ +S+ G KG + AY SK
Sbjct: 123 VLKAVSRQMITQNYGRIVNTASMA-----------GVKGPP----NMAAYGTSK------ 161
Query: 229 GA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
GA L A + V+ + PG+
Sbjct: 162 GAIIALTETAALDLAPYNIRVNAISPGYMGPGFMW 196
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 89.5 bits (223), Expect = 1e-20
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 38/216 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
++GK IITGA +GIG E A A A+VV+ + +A + E+Q GQ
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN----ADAANHVVDEIQQLGGQAFA 64
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHF 171
++ S + A + + K+ +L+NNAG P + + + +N F
Sbjct: 65 CRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDM-PMADFRRAYELNVFSFF 123
Query: 172 LLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L+ L+ ++K V++ +S+ E + ++ Y +SK
Sbjct: 124 HLSQLVAPEMEKNGGGVILTITSMA-----------AENKNI--NMTS--YASSK----- 163
Query: 228 FGAELYL------KYADKGVDVSVVCPGWCYTNLFR 257
A +L +K + V+ + PG T+ +
Sbjct: 164 -AAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK 198
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 89.5 bits (223), Expect = 1e-20
Identities = 44/217 (20%), Positives = 84/217 (38%), Gaps = 34/217 (15%)
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQ 108
Y ++ KV +I G +G TAK A +VL A KLK E++D +
Sbjct: 6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTA-NKLKDELEDQGAK 64
Query: 109 IVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGIN 166
+ L + +L++ + + K++ K+ + IN G + PI E T++ ++ IN
Sbjct: 65 VALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVE--TSEAEFDAMDTIN 122
Query: 167 HVGHFLLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK- 222
+ + + + ++ + +SL+ T +S Y +K
Sbjct: 123 NKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG--------------FYST--YAGNKA 166
Query: 223 ---LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLF 256
EL + + V+ + PG T+ F
Sbjct: 167 PVEHYTRAASKEL----MKQQISVNAIAPGPMDTSFF 199
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 89.9 bits (224), Expect = 1e-20
Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 42/217 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ +VCI+TG SGIG TA+ AK A VV+ + ++ + +
Sbjct: 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVR 79
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
++++S ++ + ++ ++ VL+NNAG + +E ++ +N G F
Sbjct: 80 VDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVT--IPEETWDRIMSVNVKGIF 137
Query: 172 LLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
L + +I +++ ++ S AY SK
Sbjct: 138 LCSKYVIPVMRRNGGGSIINTTS------------YTATSAI----ADRTAYVASK---- 177
Query: 227 YFGA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
GA + + +A +G+ V+ V PG + F
Sbjct: 178 --GAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFT 212
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 90.4 bits (225), Expect = 1e-20
Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD---GQIV 110
++G+V I+TG +GIG KEL +L + VV+ R + R + A ++L+ + +++
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGH 170
++ N+ + + + N K+ + + KI+ L+NN G + + +G+ N G
Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135
Query: 171 FLLTNLLIERIQKVVIVGSSLMDR--GTIDFDNLN----GEKGFVQKGHSNPAYCNSKLM 224
F + V SS M G+I +N + GF H ++
Sbjct: 136 FYMCKA----------VYSSWMKEHGGSI----VNIIVPTKAGFPLAVH----SGAARAG 177
Query: 225 NYYFGAELYLKYADKGVDVSVVCPGWCYT 253
Y L L++A G+ ++ V PG Y+
Sbjct: 178 VYNLTKSLALEWACSGIRINCVAPGVIYS 206
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 89.1 bits (222), Expect = 1e-20
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 40/215 (18%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
EG ++TG + GIGY +ELA L A+V R+ + L + + + ++
Sbjct: 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVC 65
Query: 115 NLASFDSIKNFAKNVMKQYP-KIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
+L+S + V + K+++L+NNAG+ + K+ T E Y + IN +
Sbjct: 66 DLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKD--YTVEDYSLIMSINFEAAY 123
Query: 172 LLTNL----LIERIQ-KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
L+ L L + VV + S ++G Y +K
Sbjct: 124 HLSVLAHPFLKASERGNVVFISS------------VSGALA----VPYEAVYGATK---- 163
Query: 227 YFGAELYL------KYADKGVDVSVVCPGWCYTNL 255
GA L ++A + V+ V PG T+L
Sbjct: 164 --GAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSL 196
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 89.1 bits (222), Expect = 1e-20
Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 24/204 (11%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
KP+E KV ++T + GIG A+ LA+ A VV+ R + L+ E +
Sbjct: 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTG 67
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEG-YEVHFGINHVGH 170
++ + + + + + +L++NA V+ + E ++ +N
Sbjct: 68 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127
Query: 171 FLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMN 225
L+T ++ ++K V+IV S + F G Y SK
Sbjct: 128 VLMTKAVVPEMEKRGGGSVLIVSS------------VGAYHPFPNLG----PYNVSKTAL 171
Query: 226 YYFGAELYLKYADKGVDVSVVCPG 249
L ++ A + + V+ + PG
Sbjct: 172 LGLTKNLAVELAPRNIRVNCLAPG 195
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 89.2 bits (222), Expect = 2e-20
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 35/217 (16%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
KP+ GKV + TGA GIG A EL + A+VV+ S +A E++ E++ Q
Sbjct: 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS---SSKAAEEVVAELKKLGAQG 73
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINH 167
V ++ +++ + + + + +++N+G+ V E T+E ++ F +N
Sbjct: 74 VAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELE--VTQELFDKVFNLNT 131
Query: 168 VGHFLLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK-- 222
G F + ++ ++ +++ S G H+ Y SK
Sbjct: 132 RGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TGIP--NHAL--YAGSKAA 176
Query: 223 --LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFR 257
F + KGV V+ + PG T++F
Sbjct: 177 VEGFCRAFAVDC----GAKGVTVNCIAPGGVKTDMFD 209
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 89.5 bits (223), Expect = 2e-20
Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 35/216 (16%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDG-QIVLME 113
+ + ++TG SGIG A L A+V++ R+ + A+++L+ +G I
Sbjct: 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP 69
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHVGHFL 172
++ + D V + ++H +++ AG S I E + +N G
Sbjct: 70 TDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMY 129
Query: 173 LTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
+ + + V + S + G AY +K
Sbjct: 130 VLKHAAREMVRGGGGSFVGISS------------IAASNTHRWFG----AYGVTK----- 168
Query: 228 FGAELYL------KYADKGVDVSVVCPGWCYTNLFR 257
A +L + V V+ + PG T+L
Sbjct: 169 -SAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVA 203
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 88.3 bits (220), Expect = 2e-20
Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 35/215 (16%)
Query: 56 GKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELN 115
+V I+TGA+SG G A V S +E +++ + +
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA-YADKVLRVRAD 60
Query: 116 LASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL---TTKEGYEVHFGINHVGHFL 172
+A + M+Q+ I VL+NNAG++ + + T E ++ +N G FL
Sbjct: 61 VADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFL 120
Query: 173 LTNLLIERIQKV---VIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYF 228
++ + VIV +S + F AY SK
Sbjct: 121 GCRAVLPHMLLQGAGVIVNIAS-----------VASLVAFP----GRSAYTTSK------ 159
Query: 229 GA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
GA + + YA G+ + VCPG T + +
Sbjct: 160 GAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQ 194
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 88.3 bits (220), Expect = 2e-20
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
M+ KV IITG +SG+G A AK A VV+ R+ +E LE+ K E++ GQI+
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRT----KEKLEEAKLEIEQFPGQILT 59
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+++++ + D I+ + + +++ +I +LINNA
Sbjct: 60 VQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAG 93
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 88.8 bits (221), Expect = 2e-20
Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 30/212 (14%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ GK +ITGA++GIG + A A+ A V + R +AL+ + E+ G+ +
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARH----SDALQVVADEIAGVGGKALP 85
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHF 171
+ ++ D ++ + + I + + NAG+ E ++ N G F
Sbjct: 86 IRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVF 145
Query: 172 LLT----NLLIERIQ--KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK--L 223
L ++++ ++ S G I + YC SK +
Sbjct: 146 LTAQAAARAMVDQGLGGTIITTASMS---GHI-----------INIPQQVSHYCTSKAAV 191
Query: 224 MNYYFGAELYLKYADKGVDVSVVCPGWCYTNL 255
++ + ++ A + V+ V PG+ T L
Sbjct: 192 VH--LTKAMAVELAPHQIRVNSVSPGYIRTEL 221
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 88.4 bits (220), Expect = 3e-20
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 39/214 (18%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++GK ++TG+ SGIG A+ LA+ A +VL AL ++ + + V
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG--DPAPALAEIAR--HGVKAVHHP 57
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV--SVPIKEKLTTKEGYEVHFGINHVGHF 171
+L+ I+ +++ + +L+NNAG+ P+++ E ++ +N F
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQ--FPLESWDKIIALNLSAVF 115
Query: 172 LLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
T L + ++ ++ + S ++G G K AY +K
Sbjct: 116 HGTRLALPGMRARNWGRIINIAS------------VHGLVGSTGK----AAYVAAK---- 155
Query: 227 YFGAE-----LYLKYADKGVDVSVVCPGWCYTNL 255
G + L+ A V + +CPGW T L
Sbjct: 156 -HGVVGLTKVVGLETATSNVTCNAICPGWVLTPL 188
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 87.6 bits (218), Expect = 3e-20
Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 40/232 (17%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
+ +ITGA+SG+G E AK L RS + L + + + +L
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRS----ESKLSTVTNCLS-NNVGYRARDL 56
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFLLT 174
AS ++ + + ++++AG ++E E + N +
Sbjct: 57 ASHQEVEQLFEQL---DSIPSTVVHSAGSGYFGLLQE--QDPEQIQTLIENNLSSAINVL 111
Query: 175 NLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY--- 227
L++R + VV++ S+ K + YC K +
Sbjct: 112 RELVKRYKDQPVNVVMIMSTA---------------AQQPKAQES-TYCAVK---WAVKG 152
Query: 228 FGAELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFP--IAMMVV 277
+ L+ K + + V PG T + + + A+M+
Sbjct: 153 LIESVRLELKGKPMKIIAVYPGGMATEFWETSGKSLDTSSFMSAEDAALMIH 204
Score = 31.4 bits (72), Expect = 0.32
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 329 ADKGVDVCVVCPGWCYTNLFRHADIKFYQKVMIFP--IAMMYMRSANQLE 376
K + + V PG T + + + A+M + +
Sbjct: 162 KGKPMKIIAVYPGGMATEFWETSGKSLDTSSFMSAEDAALMIHGALANIG 211
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 87.6 bits (218), Expect = 4e-20
Identities = 43/225 (19%), Positives = 76/225 (33%), Gaps = 36/225 (16%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ GK IITG G+G E A++ A VVL G +L
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQH 57
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLL 173
L++ + + +++ + L+NNAG+S + + + E + IN G F+
Sbjct: 58 LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIG 117
Query: 174 TNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFG 229
+I ++ ++ SS G G +Y SK
Sbjct: 118 MKTVIPAMKDAGGGSIVNISSAA-----------GLMG----LALTSSYGASK------W 156
Query: 230 A------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVM 268
++ + V+ V PG YT + I+ +
Sbjct: 157 GVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNY 201
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 87.6 bits (218), Expect = 5e-20
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
E KV I+TG+ GIG A+ LA+ A VV+ + + +++ + G + + +
Sbjct: 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAV 65
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL---TTKEGYEVHFGINHVGHF 171
+++ +S K A + ++ I L+NNA + +K E Y+ +N G
Sbjct: 66 DVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGAL 125
Query: 172 LLT 174
T
Sbjct: 126 WCT 128
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 87.2 bits (217), Expect = 5e-20
Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 57/245 (23%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++ K+ ++TGA G+G E K+L++ LG R E L L + + +E
Sbjct: 3 LKKKIAVVTGATGGMGIEIVKDLSRDHIVYALG-----RNPEHLAALAEI---EGVEPIE 54
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
++ + + K + L++ A V+ I+ + + H +N +
Sbjct: 55 SDIVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEA--GSVAEWHAHLDLNVIVPA 111
Query: 172 LLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L+ L+ ++ V+ + S G G++ Y SK
Sbjct: 112 ELSRQLLPALRAASGCVIYINSGA------------GNGPH--PGNTI--YAASK----- 150
Query: 228 FG---------AELYLKYADKGVDVSVVCPGWCYTNLFRH----ADIKFYQKVMIFP--I 272
E A+ G+ VS V PG T + + F ++ I P I
Sbjct: 151 HALRGLADAFRKEE----ANNGIRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYIEPKEI 206
Query: 273 AMMVV 277
A +
Sbjct: 207 ANAIR 211
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 87.7 bits (218), Expect = 6e-20
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD----GQIV 110
++ ++TGA+ GIG A+ L + VV R +E+L E + G ++
Sbjct: 31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCAR---T-VGNIEELAAECKSAGYPGTLI 86
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS 146
+L++ + I + + Q+ + + INNAG++
Sbjct: 87 PYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLA 122
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 87.2 bits (217), Expect = 7e-20
Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 39/220 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++GKV IITG GIG A + + A V++ R G++A + + QI +
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQ 60
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
+ + D K + + L+NNAG++V ++E TT + +N G F
Sbjct: 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEE--TTTAEWRKLLAVNLDGVF 118
Query: 172 LLT----NLLIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
T + + I+ SS+ G G S AY SK
Sbjct: 119 FGTRLGIQRMKNKGLGASIINMSSIE-----------GFVGD----PSLGAYNASK---- 159
Query: 227 YFG-------AELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
A L D V V+ V PG+ T L
Sbjct: 160 -GAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL 198
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 87.2 bits (217), Expect = 8e-20
Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 41/219 (18%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+EGKV +ITGA SG G AK AK A VV+ R + ++ + +
Sbjct: 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVA 61
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKE-KLTTKEGYEVHFGINHVGHFL 172
+++ + + + ++ K+ +L+NNAG+ + +L E ++ G+N G +L
Sbjct: 62 ADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121
Query: 173 LTNLLIERIQK-------VVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLM 224
+T+ LI ++ VI+ +S + + Y +K
Sbjct: 122 MTSKLIPHFKENGAKGQECVILNVAS-----------TGAGRPRP----NLAWYNATK-- 164
Query: 225 NYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
G L ++ A + V + P T L
Sbjct: 165 ----GWVVSVTKALAIELAPAKIRVVALNPVAGETPLLT 199
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 86.8 bits (216), Expect = 9e-20
Identities = 25/120 (20%), Positives = 45/120 (37%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
V ++TG +SGIG T + L + A V R R + A L++ ++
Sbjct: 7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVC 66
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLLT 174
++ ++ FA+ + +L+NNAG TT E + +
Sbjct: 67 DVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPV 126
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 86.8 bits (216), Expect = 1e-19
Identities = 38/218 (17%), Positives = 84/218 (38%), Gaps = 36/218 (16%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ K ++TG++ G+G A LA+ +V+ ++A + +E++ ++++
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYAR---SKKAALETAEEIEKLGVKVLV 58
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVG 169
++ N+ IK + + + + ++ V +NNA V P+ E + ++ IN
Sbjct: 59 VKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVME--LEETHWDWTMNINAKA 116
Query: 170 HFLLT----NLLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK--- 222
L+ + ++ SSL + ++ SK
Sbjct: 117 LLFCAQEAAKLMEKNGGGHIVSISSLG-----------SIRYLE--NYTT--VGVSKAAL 161
Query: 223 -LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
+ Y EL + K + V+ V G T+ +H
Sbjct: 162 EALTRYLAVEL----SPKQIIVNAVSGGAIDTDALKHF 195
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 87.2 bits (217), Expect = 1e-19
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 43 SKLKASPFYKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKK 102
S+ K +Y E KV ++TGA GIG E AK LAK + V+ R+ Q++ + +
Sbjct: 31 SENKKENYYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT----QKSCDSVVD 86
Query: 103 EVQD--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
E++ + +++ + I ++ ++ + +L+NNAG+
Sbjct: 87 EIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGI 131
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 86.4 bits (215), Expect = 1e-19
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
GKV +ITG++SGIG A+ AK A +VL R + R EA LK++ +++ + +
Sbjct: 6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-GVRVLEVAV 64
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
++A+ + + ++V + +L+NNAG I E E ++ ++ + +
Sbjct: 65 DVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIME--AADEKWQFYWELLVMAAVR 122
Query: 173 LTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK--LMN 225
L L+ ++ ++ S + + Y +K LM
Sbjct: 123 LARGLVPGMRARGGGAIIHNASI------------CAVQPLWYEPI----YNVTKAALMM 166
Query: 226 YYFGAELYLKYADKGVDVSVVCPGWCYT 253
F L + + V+ + PG T
Sbjct: 167 --FSKTLATEVIKDNIRVNCINPGLILT 192
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 86.0 bits (214), Expect = 1e-19
Identities = 52/227 (22%), Positives = 89/227 (39%), Gaps = 44/227 (19%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
G ++TGA GIG +T K L A VV R+ L L KE + V +
Sbjct: 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT----NSDLVSLAKECPGIEPV--CV 59
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
+L +D+ + + + +L+NNA + + P E TKE ++ F +N F
Sbjct: 60 DLGDWDAT----EKALGGIGPVDLLVNNAALVIMQPFLE--VTKEAFDRSFSVNLRSVFQ 113
Query: 173 LTNL----LIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK----L 223
++ + +I R IV SS++ F Y ++K +
Sbjct: 114 VSQMVARDMINRGVPGSIVNVSSMV-----------AHVTFPN----LITYSSTKGAMTM 158
Query: 224 MNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFRH--ADIKFYQKVM 268
+ EL + V+ V P T++ + AD +F +K+
Sbjct: 159 LTKAMAMEL----GPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLK 201
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 86.4 bits (215), Expect = 1e-19
Identities = 46/214 (21%), Positives = 82/214 (38%), Gaps = 37/214 (17%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
+GK +ITGA GIG + A+ A A +VL R + A L ++ + + +
Sbjct: 19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQ-FGTDVHTVAI 77
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
+LA D+ A+ + + + VL+NNAG+S P+ + T + ++ +N L
Sbjct: 78 DLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVD--TDPQLFDATIAVNLRAPAL 135
Query: 173 LTN----LLIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L + ++ + I+ +S + AYC SK
Sbjct: 136 LASAVGKAMVAAGEGGAIITVASAA-----------ALAPLPD----HYAYCTSK----- 175
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNL 255
L + G+ + VCP T +
Sbjct: 176 -AGLVMATKVLARELGPHGIRANSVCPTVVLTEM 208
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 86.5 bits (215), Expect = 2e-19
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ +V ++TGA SGIG E A+ L K V + R +E L KE+++ +
Sbjct: 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG----EEGLRTTLKELREAGVEADG 75
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS 146
++ S I+ V+++Y + VL+NNAG
Sbjct: 76 RTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP 110
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 86.5 bits (215), Expect = 2e-19
Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 32/218 (14%)
Query: 49 PFYKPM------EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKK 102
P Y+ + KV ITG SGIG+ A+ + V+ RS+ R A KL
Sbjct: 14 PAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG 73
Query: 103 EVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVH 162
+ + + +++ + ++ +K++ +I +LIN A + + ++
Sbjct: 74 A-TGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTV 132
Query: 163 FGINHVGHFLLTNLLIERIQKVVIVGSSLMDR--GTIDFDNLN-----GEKGFVQKGHSN 215
I+ G F ++ ++ G I +N G +G + H
Sbjct: 133 MDIDTSGTFNVSR----------VLYEKFFRDHGGVI----VNITATLGNRGQALQVH-- 176
Query: 216 PAYCNSKLMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
++K L +++ + + V+ + PG
Sbjct: 177 --AGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISG 212
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 86.0 bits (214), Expect = 2e-19
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
++GK I+TG++ G+G A +L + A +VL +L+ +E + +V+
Sbjct: 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGS---PASTSLDATAEEFKAAGINVVV 59
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+ ++ + + ++N K M + +I +L+NNAG+
Sbjct: 60 AKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI 93
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 86.1 bits (214), Expect = 2e-19
Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 45/234 (19%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
K+ I+TGA SG+G A LA V L R +AL++ E+ + +
Sbjct: 27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRR----LDALQETAAEI-GDDALCVPT 81
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKLTTKEGYEVHFGINHVGHF 171
++ DS++ ++++ ++ VL NNAG ++P+++ T ++ N G F
Sbjct: 82 DVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMED--LTFAQWKQVVDTNLTGPF 139
Query: 172 LLTNLLIE--RIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLM 224
L T + Q+ ++ GS ++ + Y +K
Sbjct: 140 LCTQEAFRVMKAQEPRGGRIINNGS------------ISATSPRP----YSAPYTATK-- 181
Query: 225 NYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPI 272
A L + + G T + + Q + +
Sbjct: 182 ----HAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKV 231
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 85.7 bits (213), Expect = 2e-19
Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 47/242 (19%)
Query: 57 KVCIITGANSGIGYETAKELAK-------LKATVVLGCRSMIRGQEALEKLKKEVQD--G 107
+ +ITGA GIG A E A+ + +VL R+ LEK+ E +
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT----AADLEKISLECRAEGA 58
Query: 108 QIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGI 165
+ +++ ++ +++++Y I L+NNAGV + LT ++
Sbjct: 59 LTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGAL-SDLTEEDFDYT-MNT 116
Query: 166 NHVGHFLLTNLLIERIQKVVIVGSSLMDRGTIDFDNLN---GEKGFVQKGHSNPAYCNSK 222
N G F LT + + + + + + + K F + S YC SK
Sbjct: 117 NLKGTFFLT--------QALF--ALMERQHSGHIFFITSVAATKAF--RHSSI--YCMSK 162
Query: 223 LMNYYFGAE-----LYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFP--IAMM 275
FG + L V ++ V PG YT ++ D + Q +M+ P IA
Sbjct: 163 -----FGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE-MQALMMMPEDIAAP 216
Query: 276 VV 277
VV
Sbjct: 217 VV 218
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 85.6 bits (213), Expect = 2e-19
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ KV ++TGA+ GIG+E A LA ATVV S Q + EK + +++ +
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATS----QASAEKFENSMKEKGFKARG 58
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+ LN++ +SI+NF + + I +L+NNAG+
Sbjct: 59 LVLNISDIESIQNFFAEIKAENLAIDILVNNAGI 92
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 85.7 bits (213), Expect = 2e-19
Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 39/245 (15%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+EGK +ITG+ GIG A+ + ATV + + R ++A ++ ++
Sbjct: 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQ 60
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
+++ DSI ++ + +L+NNA + PI E T+E YE F IN G
Sbjct: 61 MDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVE--ITRESYEKLFAINVAGTL 118
Query: 172 LLT----NLLIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
+I + + I+ +S G +G YC +K
Sbjct: 119 FTLQAAARQMIAQGRGGKIINMAS-----------QAGRRGEALVAI----YCATK---- 159
Query: 227 YFGAELYLK-----YADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVIVGS 281
+ ++V+ + PG + D F + ++ +
Sbjct: 160 -AAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEA 218
Query: 282 SLMDR 286
R
Sbjct: 219 VPFGR 223
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 84.5 bits (210), Expect = 3e-19
Identities = 39/223 (17%), Positives = 74/223 (33%), Gaps = 38/223 (17%)
Query: 60 IITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNLASF 119
+ITGA G+G A+ L ++L R AL +L +EV G L +LA
Sbjct: 4 LITGATGGLGGAFARALK--GHDLLLSGRR----AGALAELAREV--GARAL-PADLADE 54
Query: 120 DSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFLLTNLL 177
K ++ + +L++ G + ++E ++ E + + +
Sbjct: 55 LEAKALL----EEAGPLDLLVHAVGKAGRASVRE--AGRDLVEEMLAAHLLTAAFVLKHA 108
Query: 178 IERIQ-KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFGAELYLKY 236
+ + V G+ G + AY +K + +
Sbjct: 109 RFQKGARAVFFGAYP------------RYVQV--PGFA--AYAAAKGALEAYLEAARKEL 152
Query: 237 ADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFP--IAMMVV 277
+GV + +V T L+ K + P A V+
Sbjct: 153 LREGVHLVLVRLPAVATGLWAPLG--GPPKGALSPEEAARKVL 193
Score = 35.2 bits (82), Expect = 0.017
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 309 AYCNSKLMNYYFGAELYLKYADKGVDVCVVCPGWCYTNLFRHADIKFYQKVMIFP 363
AY +K + + +GV + +V T L+ K + P
Sbjct: 133 AYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAPLG--GPPKGALSP 185
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 85.3 bits (212), Expect = 3e-19
Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 48/242 (19%)
Query: 56 GKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELN 115
++TG + GIG + L + K V+ +++ + ++ +
Sbjct: 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINID-----------IQQSFSAENLKFIKAD 52
Query: 116 LASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFLL 173
L I N + + + NAG+ + I + E + +N
Sbjct: 53 LTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFD--IDIESIKKVLDLNVWSSIYF 108
Query: 174 TNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFGA 230
L ++ +V GS + AY SK GA
Sbjct: 109 IKGLENNLKVGASIVFNGS---------DQCFIAKPNSF-------AYTLSK------GA 146
Query: 231 ------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVIVGSSLM 284
L L A + V+ VCPG T+L+R+ K+ V I +
Sbjct: 147 IAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPL 206
Query: 285 DR 286
+R
Sbjct: 207 NR 208
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 85.3 bits (212), Expect = 3e-19
Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 50/245 (20%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
KV I+TG +SGIG L + A VV +++ + + +
Sbjct: 13 TDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLD----EKSDVNVSDHFK--------I 60
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
++ + + +K + K+Y +I +L+NNAG+ P+ T E + +N G +L
Sbjct: 61 DVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHL--TPTEIWRRIIDVNVNGSYL 118
Query: 173 LTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
+ I + ++ + S + + AY SK
Sbjct: 119 MAKYTIPVMLAIGHGSIINIAS------------VQSYAAT----KNAAAYVTSK----- 157
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVIVGS 281
A + + YA + + VCPG T + A + +
Sbjct: 158 -HALLGLTRSVAIDYA-PKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQ 215
Query: 282 SLMDR 286
M R
Sbjct: 216 HPMGR 220
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 85.7 bits (213), Expect = 4e-19
Identities = 42/218 (19%), Positives = 75/218 (34%), Gaps = 35/218 (16%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++ KV IITG GIG TAK + A VV+ + GQ+ + I +
Sbjct: 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG---SPDVISFVH 70
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL--TTKEGYEVHFGINHVGHF 171
++ + ++N + ++ K+ ++ N GV + E ++ IN G F
Sbjct: 71 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 130
Query: 172 LLTNLLIERIQKV---VIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L+ + IV +S+ F + Y +K
Sbjct: 131 LVAKHAARVMIPAKKGSIVFTASIS--------------SFTAGEGVSHVYTATK----- 171
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
A L + + G+ V+ V P + L
Sbjct: 172 -HAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDV 208
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 85.4 bits (212), Expect = 4e-19
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKL---KATVVLGCRSMIRGQEALEKLKKEVQD-- 106
+ + K +ITGA++GIG TA E + ++L R R E LE+LKK +
Sbjct: 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAAR---R-LEKLEELKKTIDQEF 84
Query: 107 --GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPI 149
++ + +L++ + IK F +N+ +++ I +L+NNAG ++
Sbjct: 85 PNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGS 129
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 84.4 bits (210), Expect = 4e-19
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
++GKV ++TGA+ GIG A +LAK A VV+ ++ ++ E++ +
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAG---NEQKANEVVDEIKKLGSDAIA 58
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+ ++A+ + + N K + + ++ +L+NNAGV
Sbjct: 59 VRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV 92
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 84.9 bits (211), Expect = 4e-19
Identities = 39/212 (18%), Positives = 87/212 (41%), Gaps = 30/212 (14%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++ +V I+TG IG LA+ A V++ +A+E L+ + + +
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM--EGHDVSSVV 68
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV---PIKEKLTTKEGYEVHFGINHVGH 170
+++ + +S++N ++V +Q ++ +L+ AG+ + ++ T + IN G
Sbjct: 69 MDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAED--MTDGQWLKQVDINLNGM 126
Query: 171 FLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK--L 223
F + + + +V +GS ++G + + Y SK +
Sbjct: 127 FRSCQAVGRIMLEQKQGVIVAIGS------------MSGLIVNRPQQQAA--YNASKAGV 172
Query: 224 MNYYFGAELYLKYADKGVDVSVVCPGWCYTNL 255
+ L ++A G+ + V P + T L
Sbjct: 173 HQ--YIRSLAAEWAPHGIRANAVAPTYIETTL 202
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 85.0 bits (211), Expect = 5e-19
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
+ K+ +ITGA+SGIG A+ ++ ++L R R E L+ L +
Sbjct: 12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLAR---R-VERLKALNLP----NTLC 63
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
++++ + K Y ++NNAG+
Sbjct: 64 AQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGM 97
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 86.0 bits (213), Expect = 5e-19
Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 33/225 (14%)
Query: 39 SRSWSKLKASPFYKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMI---RGQE 95
+ P + G ITGA+ GIG A + AK A +V+ ++ +
Sbjct: 28 QQMGRGSAMLPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLG 87
Query: 96 ALEKLKKEVQD--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL 153
+ +E++ G+ + +++ I + +K++ I +L+NNA
Sbjct: 88 TIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLD 147
Query: 154 TTKEGYEVHFGINHVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGF 208
T + ++ +N G +L + I ++K ++ + L
Sbjct: 148 TPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPL------------NLNPV 195
Query: 209 VQKGHSNPAYCNSK----LMNYYFGAELYLKYADKGVDVSVVCPG 249
K H AY +K + E + V+ + P
Sbjct: 196 WFKQHC--AYTIAKYGMSMYVLGMAEEF-----KGEIAVNALWPK 233
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 84.1 bits (209), Expect = 6e-19
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 58 VCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNLA 117
+ ++TGA +G G + + V+ R R QE L++LK E+ + + +L++
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGR---R-QERLQELKDELG-DNLYIAQLDVR 56
Query: 118 SFDSIKNFAKNVMKQYPKIHVLINNAGVSVPI 149
+ +I+ ++ ++ I +L+NNAG+++ +
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAGLALGM 88
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 84.9 bits (211), Expect = 6e-19
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
++GKV +TG++ GIG+ A+ A+ A V + S A EK + +
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNS----HPADEKAEHLQKTYGVHSKA 87
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+ N++ S++ K + I V + NAGV
Sbjct: 88 YKCNISDPKSVEETISQQEKDFGTIDVFVANAGV 121
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 84.1 bits (209), Expect = 7e-19
Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 44/213 (20%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
G+ ++TGA GIG T + L A VV R+ Q L+ L +E I + +
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT----QADLDSLVREC--PGIEPVCV 59
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
+L +++ + + + +L+NNA V++ P E TKE ++ F +N
Sbjct: 60 DLGDWEAT----ERALGSVGPVDLLVNNAAVALLQPFLE--VTKEAFDRSFEVNLRAVIQ 113
Query: 173 LT----NLLIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
++ LI R IV SS ++ ++ YC++K
Sbjct: 114 VSQIVARGLIARGVPGAIVNVSSQC-----------SQRA----VTNHSVYCSTK----- 153
Query: 228 FGAELYLK-----YADKGVDVSVVCPGWCYTNL 255
++ K + V+ V P T++
Sbjct: 154 GALDMLTKVMALELGPHKIRVNAVNPTVVMTSM 186
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 84.4 bits (210), Expect = 7e-19
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 40/215 (18%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
GK ++TG+ G+G+ A+ LA A V+L E+++ L ++ +
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAF 65
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
++ +I+ + + + +LINNAG+ P+ E L + +V N FL
Sbjct: 66 DVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVE-LELENWQKV-IDTNLTSAFL 123
Query: 173 LT----NLLIERIQ--KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
++ +I R K++ +GS L + + Y +K
Sbjct: 124 VSRSAAKRMIARNSGGKIINIGS------------LTSQAA----RPTVAPYTAAK---- 163
Query: 227 YFGA------ELYLKYADKGVDVSVVCPGWCYTNL 255
G + ++A + + + PG+ T++
Sbjct: 164 --GGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDM 196
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 85.3 bits (212), Expect = 7e-19
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 48 SPFYKPM------EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLK 101
SP K M +GKV ITG +G+G L+ L A V+ R M + E++
Sbjct: 12 SPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQIS 71
Query: 102 KEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAG 144
+ ++ ++ ++ D ++N ++K +++INNA
Sbjct: 72 SQ-TGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAA 113
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 84.5 bits (210), Expect = 7e-19
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
++ K ++TG GIG+ +E A A + R+ + L + + Q Q+
Sbjct: 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN----EYELNECLSKWQKKGFQVTG 67
Query: 112 MELNLASFDSIKNFAKNVMKQY-PKIHVLINNAGVSVPIKEKLT---TKEGYEVHFGINH 167
+ + + + V + K+ +LINN G I+ K T T E + H N
Sbjct: 68 SVCDASLRPEREKLMQTVSSMFGGKLDILINNLGA---IRSKPTLDYTAEDFSFHISTNL 124
Query: 168 VGHFLLT 174
+ L+
Sbjct: 125 ESAYHLS 131
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 83.7 bits (208), Expect = 7e-19
Identities = 52/219 (23%), Positives = 78/219 (35%), Gaps = 43/219 (19%)
Query: 54 MEG--KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
MEG +ITGA+ GIG TA+ L V L R ++ L+ L E+ +
Sbjct: 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARD----EKRLQALAAEL--EGALP 54
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVG 169
+ ++ + + + ++ L+NNAGV V P+ E T E + + N G
Sbjct: 55 LPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHE--LTLEEWRLVLDTNLTG 112
Query: 170 HFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLM 224
FL + + + +V VGS G F Y SK
Sbjct: 113 AFLGIRHAVPALLRRGGGTIVNVGSLA---GKNPFKGGAA-------------YNASK-- 154
Query: 225 NYYFGAE-----LYLKYADKGVDVSVVCPGWCYTNLFRH 258
FG L + V V V PG T +
Sbjct: 155 ---FGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN 190
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 84.5 bits (210), Expect = 7e-19
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ +IT G+G + ++L +V + S A+E +K+ +D ++
Sbjct: 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS---DTTAMETMKETYKDVEERLQF 61
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV 147
++ ++ + + + M + KI LINNAG V
Sbjct: 62 VQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYV 97
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 84.1 bits (209), Expect = 8e-19
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
M ++ +TG GIG + L K VV GC K ++ +
Sbjct: 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGP---NSPRRVKWLEDQKALGFDFYA 67
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
E N+ +DS K V + +I VL+NNAG+
Sbjct: 68 SEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI 101
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 84.5 bits (210), Expect = 8e-19
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
K ++ +V I+TGA+ GIG A ELA+ A V+ + + E + + +
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATT----EAGAEGIGAAFKQAGLEG 79
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
LN+ ++ ++ +K++ ++VL+NNAG+
Sbjct: 80 RGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGI 115
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 84.5 bits (210), Expect = 8e-19
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 45 LKASPFYKPM----EGKVCIITGA-NSGIGYETAKELAKLKATVVLGCRSMIRGQEALEK 99
L +P +GKV ++T A +GIG TA+ A VV+ R E ++
Sbjct: 7 LSEAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ 66
Query: 100 LKKEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
L ++ G++ + ++ S +++ +++ ++ VL+NNAG+
Sbjct: 67 LA-DLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGL 111
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 84.1 bits (209), Expect = 8e-19
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
K ++TGA+ GIG A +LA+ V + +E E + +E++
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAG---SKEKAEAVVEEIKAKGVDSFA 58
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
++ N+A D +K K V+ Q+ + VL+NNAG+
Sbjct: 59 IQANVADADEVKAMIKEVVSQFGSLDVLVNNAGI 92
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 84.1 bits (209), Expect = 8e-19
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQ 108
+ ++GK +ITG++ GIG TA+ A+ A V L R + +++ ++ G
Sbjct: 2 FPDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGR---KAPANIDETIASMRADGGD 58
Query: 109 IVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVP------IKEKLTTKEGYEVH 162
+LA+ ++ + + ++ I VLINNAG V I + Y+
Sbjct: 59 AAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDD-----TFYDAV 113
Query: 163 FGINHVGHFLLT 174
N + T
Sbjct: 114 MDANIRSVVMTT 125
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 84.2 bits (209), Expect = 1e-18
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++G+ ++TG GIG A A+ A V + RS + L + G+++ ++
Sbjct: 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL-GSGKVIGVQ 66
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+++ A ++++ I V+ NAGV
Sbjct: 67 TDVSDRAQCDALAGRAVEEFGGIDVVCANAGV 98
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 84.6 bits (210), Expect = 1e-18
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ + ++TG GIG A A+ A V + RS +L E+ G ++ +
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAEL-GELGAGNVIGVR 97
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
L+++ S + A+ V+ + + V+ NAG+
Sbjct: 98 LDVSDPGSCADAARTVVDAFGALDVVCANAGI 129
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 83.8 bits (208), Expect = 1e-18
Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 44/217 (20%)
Query: 53 PMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIV 110
PM G+VC++TGA+ GIG A +L K ATV + R + L + +E Q GQ V
Sbjct: 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRH----LDTLRVVAQEAQSLGGQCV 57
Query: 111 LMELNLASFDSIKNFAKNVMK-QYPKIHVLINNAGVSVPIKE--------KLTTKEGYEV 161
+ + + +++ + V + Q ++ VL+NNA V + ++
Sbjct: 58 PVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDI 117
Query: 162 HFGINHVGHFLLTN----LLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPA 217
+ GH+ + L++ Q +++V SS N
Sbjct: 118 -NNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQ----------------YMFNVP 160
Query: 218 YCNSK----LMNYYFGAELYLKYADKGVDVSVVCPGW 250
Y K + EL GV + PG
Sbjct: 161 YGVGKAACDKLAADCAHEL----RRHGVSCVSLWPGI 193
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 83.7 bits (208), Expect = 1e-18
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ V I+TGA +GIG A AK A+VV+ E E + ++ G+ +
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK----SEGAEAVAAAIRQAGGKAIG 65
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHF 171
+E N+ + K + Q+ KI VL+NNAG P + + F +N F
Sbjct: 66 LECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWA-FKLNLFSLF 124
Query: 172 LLT 174
L+
Sbjct: 125 RLS 127
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 83.8 bits (208), Expect = 1e-18
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+ ++ ++TGA+ GIG A ELA A V + S A +++ + G+
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS---SAGAADEVVAAIAAAGGEAFA 82
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
++ +++ ++ V++++ ++ VL+NNAG+
Sbjct: 83 VKADVSQESEVEALFAAVIERWGRLDVLVNNAGI 116
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 83.7 bits (208), Expect = 1e-18
Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 41/219 (18%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++GKV ++TG SG+G E K L A V + GQ+ +L + + +
Sbjct: 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----ERSMFVR 58
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
+++S V ++ ++VL+NNAG+ + ++ E + IN F
Sbjct: 59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMET--GRLEDFSRLLKINTESVF 116
Query: 172 LLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYF 228
+ I +++ +I +S ++ Y SK
Sbjct: 117 IGCQQGIAAMKETGGSIINMAS-----------VSSWLP----IEQYAGYSASK------ 155
Query: 229 GA------ELYLKYADKGVDVSV--VCPGWCYTNLFRHA 259
A L +G + V + P YT + + +
Sbjct: 156 AAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS 194
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 84.2 bits (209), Expect = 1e-18
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
+EGKV ++TGA GIG E A EL + V++ + E+ E++ ++
Sbjct: 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN---STESAEEVVAAIKKNGSDA 81
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINH 167
++ N+ + I + +K + K+ ++ +N+GV +K+ T E ++ F IN
Sbjct: 82 ACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKD--VTPEEFDRVFTINT 139
Query: 168 VGHFLLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK-- 222
G F + + ++ ++++GS + H+ Y SK
Sbjct: 140 RGQFFVAREAYKHLEIGGRLILMGSITGQAKAV-------------PKHAV--YSGSKGA 184
Query: 223 --LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFR 257
++ ADK + V+VV PG T+++
Sbjct: 185 IETFARCMAIDM----ADKKITVNVVAPGGIKTDMYH 217
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 83.7 bits (208), Expect = 1e-18
Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 42/219 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ GKV I+TGA +GIG A+ LA V+ A K+
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACR 81
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
++++ I + + + L+ NAGV + + TT E ++ IN G +
Sbjct: 82 VDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLID--TTVEDFDRVIAINLRGAW 139
Query: 172 LLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
L T R+ + +V + S L G+ AY SK
Sbjct: 140 LCTKHAAPRMIERGGGAIVNLSS------------LAGQVAVG----GTGAYGMSK---- 179
Query: 227 YFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHA 259
+ G+ + + P + T + + A
Sbjct: 180 --AGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTA 216
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 83.8 bits (208), Expect = 1e-18
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 36/215 (16%)
Query: 53 PMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIV 110
KV I+TGA+ GIG A LA TVV+ A E++ +++ G+ +
Sbjct: 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAG---KAAAAEEVAGKIEAAGGKAL 80
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHV 168
+ +++ +++ + + + VL+NNAG+ I E T ++ +N
Sbjct: 81 TAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAE--TGDAVFDRVIAVNLK 138
Query: 169 GHFLLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK--- 222
G F +R++ ++ + +S + Y +K
Sbjct: 139 GTFNTLREAAQRLRVGGRIINMSTSQ------------VGLLHP--SYGI--YAAAKAGV 182
Query: 223 -LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLF 256
M + EL + + V+ V PG T+LF
Sbjct: 183 EAMTHVLSKEL----RGRDITVNAVAPGPTATDLF 213
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 83.7 bits (208), Expect = 1e-18
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ G+ ++TGA GIG A+ A V L ++ L+++ ++ + +
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR----EDKLKEIAADLG-KDVFVFS 79
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
NL+ SIK A+ ++ I +L+NNAG+
Sbjct: 80 ANLSDRKSIKQLAEVAEREMEGIDILVNNAGI 111
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 83.4 bits (207), Expect = 2e-18
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVL 111
+V +TG G+G ++ L V + + + +D
Sbjct: 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSE---RNDHVSTWLMHERDAGRDFKA 79
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+++A F+S + A+ V+ + K+ VLINNAG+
Sbjct: 80 YAVDVADFESCERCAEKVLADFGKVDVLINNAGI 113
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 83.4 bits (207), Expect = 2e-18
Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 33/213 (15%)
Query: 52 KPM----EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDG 107
M +GK ++TG+ +GIG A L A V++ R E +++++ + D
Sbjct: 2 NAMHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDA 61
Query: 108 QIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV--SVPIKEKLTTKEGYEVHFGI 165
+ + +L + ++V+++YPK+ +LINN G+ V + E + F +
Sbjct: 62 ILQPVVADLGTEQGC----QDVIEKYPKVDILINNLGIFEPVEYFD--IPDEDWFKLFEV 115
Query: 166 NHVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCN 220
N + LT ++++ + V+ + S + H Y
Sbjct: 116 NIMSGVRLTRSYLKKMIERKEGRVIFIASE------------AAIMPSQEMAH----YSA 159
Query: 221 SKLMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
+K M L V V+ + PG T
Sbjct: 160 TKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLT 192
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 83.3 bits (207), Expect = 2e-18
Identities = 45/215 (20%), Positives = 71/215 (33%), Gaps = 43/215 (20%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
GK ++TG GIG A+ A+ A V L + K+ + ++
Sbjct: 5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR--------PEGKEVAEAIGGAFFQV 56
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
+L F + ++ VL+NNA ++ + +N
Sbjct: 57 DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALT--VRLPEWRRVLEVNLTAPMH 114
Query: 173 LTNLLIERIQKV---VIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYF 228
L+ L ++KV IV +S+ G L E+ N AY SK
Sbjct: 115 LSALAAREMRKVGGGAIVNVASVQ--G------LFAEQE-------NAAYNASK------ 153
Query: 229 GA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
G L L A + V+ V PG T
Sbjct: 154 GGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVL 188
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 83.0 bits (206), Expect = 2e-18
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
K I+TG N GIG + +A A V + RS E EK+ KE + +
Sbjct: 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE-FGVKTKAYQ 70
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS 146
++++ D + + + I LI NAGVS
Sbjct: 71 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVS 103
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 83.4 bits (207), Expect = 2e-18
Identities = 40/218 (18%), Positives = 82/218 (37%), Gaps = 30/218 (13%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLG--CRSM------IRGQEALEKLKKEVQ 105
++ KV ++TG G G A +LA+ A ++L C + + LE+ EV+
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 106 D--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHF 163
+ E+++ ++ N + ++ K+ V++ NAG+ + + F
Sbjct: 68 KTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAH--LPVQAFADAF 125
Query: 164 GINHVGHFLLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCN 220
++ VG + + + ++ GS G I G G G + Y
Sbjct: 126 DVDFVGVINTVHAALPYLTSGASIITTGSVA---GLIAAAQPPGAGGPQGPGGAG--YSY 180
Query: 221 SK-----LMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
+K +L + A + + +V+ P T
Sbjct: 181 AKQLVDSYTL-----QLAAQLAPQSIRANVIHPTNVNT 213
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 82.5 bits (205), Expect = 2e-18
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++GKV ++TG+ GIG A++LA +TV++ S R + E++ + + +E
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANK-YGVKAHGVE 63
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+NL S +SI + + I +L+NNAG+
Sbjct: 64 MNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 83.1 bits (206), Expect = 2e-18
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
+ +TG +SGIG A+ LA V R + + ++ +
Sbjct: 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARD----AKNVSAAVDGLRAAGHDV 75
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS 146
++ S D + ++++ I +L+N+AG +
Sbjct: 76 DGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRN 112
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 82.6 bits (205), Expect = 3e-18
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ GK ++TGA SGIG A+ A++V R EA+ L + + + +
Sbjct: 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVV 58
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+++ +++ ++++ ++H + + AGV
Sbjct: 59 ADVSDPKAVEAVFAEALEEFGRLHGVAHFAGV 90
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 81.8 bits (203), Expect = 5e-18
Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 46/249 (18%)
Query: 56 GKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVLME 113
KV ++TG GIG +++LA + + + + +E + K ++ + V +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVAD--LPQQEEQAAETIKLIEAADQKAVFVG 59
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
L++ + + ++ VL+NNAG++ P+ E T+E + + +N F
Sbjct: 60 LDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLE--VTEEDLKQIYSVNVFSVF 117
Query: 172 LLT----NLLIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
E K I+ +S + +GF Y +K
Sbjct: 118 FGIQAASRKFDELGVKGKIINAAS-----------IAAIQGFPILSA----YSTTK---- 158
Query: 227 YFG---------AELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVV 277
F EL A KG V+ PG T ++ D + +
Sbjct: 159 -FAVRGLTQAAAQEL----APKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKE 213
Query: 278 IVGSSLMDR 286
S + R
Sbjct: 214 YSSSIALGR 222
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 81.4 bits (202), Expect = 6e-18
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
+ I+TG GIG + + + V ++ KE + ++
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDID----EKRSADFAKE--RPNLFYFHGDV 56
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGVS 146
A ++K F + M++ +I VL+NNA
Sbjct: 57 ADPLTLKKFVEYAMEKLQRIDVLVNNACRG 86
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 81.9 bits (203), Expect = 6e-18
Identities = 18/121 (14%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ +ITGA+ +G A L + V++ R+ ++ E++ V +
Sbjct: 25 LSSAPILITGASQRVGLHCALRLLEHGHRVIISYRT---EHASVT----ELRQAGAVALY 77
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLL 173
+ + I F + Q + +++NA + + + + F ++ + +L+
Sbjct: 78 GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLA-ETPGEEADNFTRMFSVHMLAPYLI 136
Query: 174 T 174
Sbjct: 137 N 137
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 81.4 bits (202), Expect = 7e-18
Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 40/224 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ GKV +++G G+G + + A VV G G+ +L +
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVH 59
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
L++ K + + +HVL+NNAG+ I++ ++ +N G F
Sbjct: 60 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIED--YALTEWQRILDVNLTGVF 117
Query: 172 LLTNLLIERIQKV---VIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L +++ +++ I+ SS+ G G + Y +K
Sbjct: 118 LGIRAVVKPMKEAGRGSIINISSIE-----------GLAG----TVACHGYTATK----- 157
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQ 265
A L+ G+ V+ + PG T + +Q
Sbjct: 158 -FAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQ 200
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 81.9 bits (203), Expect = 7e-18
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
+GK+ ++TGA+ GIG+ A AK AT+V + + K
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAA--GINAHGYVC 90
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
++ D I+ + + I +L+NNAG+
Sbjct: 91 DVTDEDGIQAMVAQIESEVGIIDILVNNAGI 121
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 81.4 bits (202), Expect = 7e-18
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+EGKV ++TGA+ GIG A+ LA+ A V+ S + + + + M
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS----ESGAQAISDYLG-DNGKGMA 61
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
LN+ + +SI+ K + ++ + +L+NNAG+
Sbjct: 62 LNVTNPESIEAVLKAITDEFGGVDILVNNAGI 93
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 81.4 bits (202), Expect = 7e-18
Identities = 45/214 (21%), Positives = 97/214 (45%), Gaps = 37/214 (17%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
G+V ++TG + G+G+ A+ LA+ +VV+ R++ EA +KL ++ + +
Sbjct: 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK-YGVETMAFRC 78
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVS--VPIKEKLTTKEGYEVHFGINHVGHFL 172
++++++ +K + V +++ K+ ++N AG++ P +E + + +N G +
Sbjct: 79 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEE--FPLDEFRQVIEVNLFGTYY 136
Query: 173 LT----NLLIERIQ-KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
+ +LL E ++ +GS ++ T+ AY SK
Sbjct: 137 VCREAFSLLRESDNPSIINIGSLTVEEVTMPN---------------ISAYAASK----- 176
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNL 255
G L ++ G+ V+V+ PGW T +
Sbjct: 177 -GGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM 209
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 81.2 bits (201), Expect = 8e-18
Identities = 26/212 (12%), Positives = 56/212 (26%), Gaps = 40/212 (18%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
K ++ G + +G E K + +
Sbjct: 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH--------------SFT 65
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHVGHFL 172
+ + + IK+ + + + K+ + AG + + +N F
Sbjct: 66 IKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFA 125
Query: 173 LTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK----LMN 225
++ + + + V+ G+S LN G + AY +K +
Sbjct: 126 SAHIGAKLLNQGGLFVLTGASA---------ALNRTSGMI-------AYGATKAATHHII 169
Query: 226 YYFGAELYLKYADKGVDVSVVCPGWCYTNLFR 257
+E G + P T R
Sbjct: 170 KDLASE--NGGLPAGSTSLGILPVTLDTPTNR 199
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 81.0 bits (201), Expect = 9e-18
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVLMEL 114
V ++TGA+ GIG A L K V++ R +A E++ K+++ GQ +
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYA---RSAKAAEEVSKQIEAYGGQAITFGG 58
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+++ ++ K + + I V++NNAG+
Sbjct: 59 DVSKEADVEAMMKTAIDAWGTIDVVVNNAGI 89
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 81.5 bits (202), Expect = 1e-17
Identities = 36/213 (16%), Positives = 76/213 (35%), Gaps = 36/213 (16%)
Query: 53 PMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMI---RGQEALEKLKKEVQD--G 107
+ GK ITGA+ GIG A A+ A V + +S + + + V G
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 108 QIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGI 165
Q + ++ ++ D ++ + + I +L+NNA + T + +++ +
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLD--TPMKRFDLMQQV 120
Query: 166 NHVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCN 220
N G F+ + + + ++ + + H+ Y
Sbjct: 121 NARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNP----------AWW--GAHTG--YTL 166
Query: 221 SK----LMNYYFGAELYLKYADKGVDVSVVCPG 249
+K L+ AE +GV ++ + P
Sbjct: 167 AKMGMSLVTLGLAAEF----GPQGVAINALWPR 195
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 81.1 bits (201), Expect = 1e-17
Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 45/233 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ G+ I+TG + GIG A+ L K ATV + A + + +++G + E
Sbjct: 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLD----VMAAQAVVAGLENGGFAV-E 64
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
+++ S+ + + +L NAGVS P + T E ++ +F +N G F
Sbjct: 65 VDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVD--ITDEEWDFNFDVNARGVF 122
Query: 172 LLTNLLIERIQKVVIVGSSLMDRGT----IDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L Q + T ++ +L + G ++ Y SK
Sbjct: 123 LAN-------QIAC---RHFLASNTKGVIVNTASLAAKVGAP--LLAH--YSASK----- 163
Query: 228 FG---------AELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFP 271
F E+ A K + V+ VCPG+ T + I + + P
Sbjct: 164 FAVFGWTQALAREM----APKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTP 212
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 81.0 bits (201), Expect = 1e-17
Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
++GKV ++TGA+ GIG AK LA A V + + +E E+ E+Q G
Sbjct: 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGN---RKEEAEETVYEIQSNGGSA 59
Query: 110 VLMELNLASFDSIKNFAKNVMKQ------YPKIHVLINNAGVSV--PIKEKLTTKEGYEV 161
+ NL S ++ ++ + K +LINNAG+ I+E TT++ ++
Sbjct: 60 FSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEE--TTEQFFDR 117
Query: 162 HFGINHVGHFLLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAY 218
+N F + + R++ ++ + S+ Y
Sbjct: 118 MVSVNAKAPFFIIQQALSRLRDNSRIINISSAA------------TRISLP--DFIA--Y 161
Query: 219 CNSK----LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLF 256
+K M + +L +G+ V+ + PG+ T++
Sbjct: 162 SMTKGAINTMTFTLAKQL----GARGITVNAILPGFVKTDMN 199
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 81.1 bits (201), Expect = 1e-17
Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 35/217 (16%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
++GKV ++TG+ GIG A L +L A VV+ + + EK+ E++
Sbjct: 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN---STKDAEKVVSEIKALGSDA 70
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINH 167
+ ++ ++ I + + + + ++N+GV +K+ T+E ++ F +N
Sbjct: 71 IAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKD--VTEEEFDRVFSLNT 128
Query: 168 VGHFLLTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK-- 222
G F + + + +V+ S+ ++ HS Y SK
Sbjct: 129 RGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSV-------------PKHSL--YSGSKGA 173
Query: 223 --LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFR 257
F + DK + V+ V PG T++F
Sbjct: 174 VDSFVRIFSKDC----GDKKITVNAVAPGGTVTDMFH 206
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 81.2 bits (201), Expect = 1e-17
Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 37/212 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMI---RGQEALEKLKKEVQD--GQ 108
+ GK I+G + GIG AK +A A V L +S + + KE+++ GQ
Sbjct: 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQ 66
Query: 109 IVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGIN 166
+ + ++ D++ ++Q+ I + +NNA I+E + +++ GI
Sbjct: 67 ALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEE--VPLKRFDLMNGIQ 124
Query: 167 HVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNS 221
G + ++ I ++ ++ + + + Y +
Sbjct: 125 VRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKW-------------LRPT--PYMMA 169
Query: 222 K----LMNYYFGAELYLKYADKGVDVSVVCPG 249
K L EL D G+ + + P
Sbjct: 170 KYGMTLCALGIAEEL----RDAGIASNTLWPR 197
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 80.2 bits (199), Expect = 1e-17
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++ K +ITGA GIG T + AK A +V L++ + +
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE-------GPLREAAEAVGAHPVV 55
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+++A S++ + ++ +++ AG+
Sbjct: 56 MDVADPASVERGFAEALAHLGRLDGVVHYAGI 87
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 81.1 bits (201), Expect = 1e-17
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
G+V +ITG SG+G A V + +S E L +L+ G V +
Sbjct: 4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKS----AERLRELEVAH-GGNAVGVVG 58
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKL--TTKEGYEVHFGINHVG 169
++ S K A+ + + KI LI NAG+ S + + ++ F +N G
Sbjct: 59 DVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKG 118
Query: 170 HFLLT 174
+
Sbjct: 119 YIHAV 123
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 79.8 bits (198), Expect = 2e-17
Identities = 41/216 (18%), Positives = 79/216 (36%), Gaps = 45/216 (20%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++GKV I+T A GIG A A+ A V+ + + L++L+K I
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN----ESKLQELEKY---PGIQTRV 56
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHF 171
L++ I FA + ++ VL N AG + + ++ ++ +N +
Sbjct: 57 LDVTKKKQIDQFA----NEVERLDVLFNVAGFVHHGTVLD--CEEKDWDFSMNLNVRSMY 110
Query: 172 LLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
L+ + ++ +I SS+ V+ + Y +K
Sbjct: 111 LMIKAFLPKMLAQKSGNIINMSSVA--------------SSVKGVVNRCVYSTTK----- 151
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
A + + +G+ + VCPG T +
Sbjct: 152 -AAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQ 186
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 80.3 bits (199), Expect = 2e-17
Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 42/207 (20%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
+ KV +ITGA+ GIG + VV RS K D I +
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS-----------IKPSADPDIHTVAG 75
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL---TTKEGYEVHFGINHVGHF 171
+++ ++ + ++++ +I L+NNAGV K T+E Y+ + G+N G F
Sbjct: 76 DISKPETADRIVREGIERFGRIDSLVNNAGV---FLAKPFVEMTQEDYDHNLGVNVAGFF 132
Query: 172 LLTNLLIERIQKVVIVGSSLMDRGT---IDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYF 228
+T + + ++ +G+ + ++ V G + +K
Sbjct: 133 HIT--------QRAA--AEMLKQGSGHIVSITTSLVDQPMV--GMPSALASLTK-----G 175
Query: 229 GAELYLK-----YADKGVDVSVVCPGW 250
G + ++ GV V+ V PG
Sbjct: 176 GLNAVTRSLAMEFSRSGVRVNAVSPGV 202
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 80.4 bits (199), Expect = 3e-17
Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 39/226 (17%)
Query: 48 SPFYKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD- 106
P ME ++TGA IG A +L + VV+ + EA L E+
Sbjct: 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHN---SAEAAVSLADELNKE 71
Query: 107 --GQIVLMELNLASFD----SIKNFAKNVMKQYPKIHVLINNAGVSVP----------IK 150
V+ + +L + + S + + + + + VL+NNA P
Sbjct: 72 RSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNS 131
Query: 151 EKLTTKEGYEVHFGINHVGHFLLTNLLIERIQKVVIVGSSLMDRGTIDFDNLN-----GE 205
T + G N + FLLT +R + +S +I +N +
Sbjct: 132 NGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTS--SNLSI----VNLCDAMVD 185
Query: 206 KGFVQKGHSNPAYCNSK--LMNYYFGAELYLKYADKGVDVSVVCPG 249
+ S Y K L+ L+ A G+ V+ V PG
Sbjct: 186 QPC--MAFSL--YNMGKHALVG--LTQSAALELAPYGIRVNGVAPG 225
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 79.5 bits (197), Expect = 3e-17
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
+ + GK ++TGA GIG A LA ATV++ + E + + +
Sbjct: 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDIN----AEGAKAAAASI-GKKARA 56
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+ +++ S+K + I +L+NNA +
Sbjct: 57 IAADISDPGSVKALFAEIQALTGGIDILVNNASI 90
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 79.5 bits (197), Expect = 4e-17
Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 45/246 (18%)
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIV 110
+ + KV I+TGA+ GIG A+ + V+ +
Sbjct: 3 FSDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDH------------ 50
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGH 170
+E ++ + D +K ++ K+Y I VL+NNAG+ K + + + +N G+
Sbjct: 51 -IECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGY 109
Query: 171 FLLTNLLIERIQK----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
+ + I + + ++ SS+ K AY SK
Sbjct: 110 YYASKFAIPYMIRSRDPSIVNISSVQ--A------SIITKNA-------SAYVTSK---- 150
Query: 227 YFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVIVG 280
A + L YA + + VCP T L R A + +
Sbjct: 151 --HAVIGLTKSIALDYA-PLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH 207
Query: 281 SSLMDR 286
M R
Sbjct: 208 EHPMQR 213
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 79.5 bits (197), Expect = 4e-17
Identities = 43/214 (20%), Positives = 83/214 (38%), Gaps = 40/214 (18%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
+G +TGA SGIG E + A A ++L R AL++ +E+ +
Sbjct: 10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDRE----AAALDRAAQELGAAVAARIVA 65
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVS--VPIKEKLTTKEGYEVHFGINHVGHFL 172
++ +++ A + + +L+N+AG++ + +V +N G F
Sbjct: 66 DVTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDA-LETDDATWRQV-MAVNVDGMFW 122
Query: 173 LT----NLLIERIQ-KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
+ ++ R +V +GS ++G +Y SK
Sbjct: 123 ASRAFGRAMVARGAGAIVNLGS------------MSGTIVNR--PQFASSYMASK----- 163
Query: 228 FGA------ELYLKYADKGVDVSVVCPGWCYTNL 255
GA L ++A +GV V+ + PG+ T +
Sbjct: 164 -GAVHQLTRALAAEWAGRGVRVNALAPGYVATEM 196
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 79.5 bits (197), Expect = 4e-17
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
+ GK +TG + GIG AK LA A V L + E + + E++ G+
Sbjct: 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN---AAERAQAVVSEIEQAGGRA 83
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINH 167
V + + ++I+ + ++ + +L+N+AG+ P++E TT ++ +N
Sbjct: 84 VAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEE--TTVADFDEVMAVNF 141
Query: 168 VGHFLLTNLLIERIQK---VVIVGSSLMDR 194
F+ + ++ +GS+L +
Sbjct: 142 RAPFVAIRSASRHLGDGGRIITIGSNLAEL 171
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 79.1 bits (196), Expect = 5e-17
Identities = 47/244 (19%), Positives = 80/244 (32%), Gaps = 40/244 (16%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVLMEL 114
KV ++TGA GIG A L K V + + + + E+ G V +++
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYN----DATAKAVASEINQAGGHAVAVKV 58
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFL 172
+++ D + + K V++NNAGV+ PI+ T E + + IN G
Sbjct: 59 DVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIES--ITPEIVDKVYNINVKGVIW 116
Query: 173 LT----NLLIERIQKVVIVG-SSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
+ I+ S G G + Y +SK
Sbjct: 117 GIQAAVEAFKKEGHGGKIINACSQA-----------GHVGNPELAV----YSSSK----- 156
Query: 228 FGAELYLK-----YADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVIVGSS 282
F + A G+ V+ CPG T ++ D + +
Sbjct: 157 FAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI 216
Query: 283 LMDR 286
+ R
Sbjct: 217 TLGR 220
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 79.6 bits (197), Expect = 5e-17
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
V I+TG GIG A+ LA + + E + + E+ ++
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIG---DAEGVAPVIAELSGLGARV 81
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL--TTKEGYEVHFGINH 167
+ + +LA S + V+ ++ +I L+NNAG++ +++ E ++ G+N
Sbjct: 82 IFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNL 141
Query: 168 VGHFLLT 174
G T
Sbjct: 142 RGTVFFT 148
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 79.1 bits (196), Expect = 5e-17
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKE-----VQD 106
+ + ++TGA SGIG + LA ATV QE + L
Sbjct: 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 62
Query: 107 GQIVLMELNLASFDSIKNFAKNVMKQYPKI-HVLINNAGV 145
G + +++ + + + V + + V+++ AG+
Sbjct: 63 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 81.2 bits (201), Expect = 6e-17
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
KP++GKV ++TGA GIG A+ A+ ATVV A E LK+
Sbjct: 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVD-----GAAEDLKRVADKVGGTA 263
Query: 112 MELNLASFDSIKNFAKNVMKQY-PKIHVLINNAGV 145
+ L++ + D++ +V + + K+ +L+NNAG+
Sbjct: 264 LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI 298
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 78.3 bits (194), Expect = 7e-17
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
+ ++ K+ +ITG +GIG A+ A A + + EA ++ +++
Sbjct: 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLV--PAPEAEAAIRNL--GRRVLT 58
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
++ +++ ++ F K V+ + + +L+NNAG+
Sbjct: 59 VKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGI 92
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 78.8 bits (195), Expect = 7e-17
Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 47/224 (20%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD---GQIV 110
EG++ ++TG +G+G A+ L+ +VV+ R + L+ E+ +
Sbjct: 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRR----PDVLDAAAGEIGGRTGNIVR 86
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKLTTKEGYEVHFGINH 167
+ ++ D + V ++ ++ +L+NNAG VP++E T E + N
Sbjct: 87 AVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEE--VTFEQWNGIVAANL 144
Query: 168 VGHFLLTNLLIERIQK-------VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCN 220
G FL T ++ ++ GS ++ + + Y
Sbjct: 145 TGAFLCTQHAFRMMKAQTPRGGRIINNGS------------ISAQTPRPN----SAPYTA 188
Query: 221 SKLMNYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRH 258
+K A L + + G T++
Sbjct: 189 TK------HAITGLTKSTALDGRMHDIACGQIDIGNAATDMTAR 226
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 78.7 bits (195), Expect = 7e-17
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQI 109
+ + ++ GA IG A A+ A VVL E E++
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG---AAEGAATAVAEIEKLGRSA 60
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKLTTKEGYEVHFGIN 166
+ ++ +L + ++ ++ +IH L++ AG I E + + +N
Sbjct: 61 LAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAE--MDEAFWHQVLDVN 118
Query: 167 HVGHFLLT 174
FL
Sbjct: 119 LTSLFLTA 126
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 79.4 bits (196), Expect = 8e-17
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSM-IRGQEALEKLKKEVQD--GQIV 110
M K+ +ITGA+SG G TA+ LA V R + R +E + +D +
Sbjct: 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLR 62
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHV 168
+EL++ S S+ ++ + +I VLI+NAG V P + T E + + IN +
Sbjct: 63 TLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEA--FTPEQFAELYDINVL 120
Query: 169 GHFLLTNLLIE--RIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKL 223
+ + R QK ++ + SS Y +K
Sbjct: 121 STQRVNRAALPHMRRQKHGLLIWISSSS---SAGGTPPYLA------------PYFAAK- 164
Query: 224 MNYYFGAE-----LYLKYADKGVDVSVVCPGWCYTNL 255
+ + + G++ S++ PG +
Sbjct: 165 ----AAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 77.9 bits (193), Expect = 1e-16
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD---GQIVLME 113
+ +ITGA+ GIG A LA+ + + +E E++ +E + + ++
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQ---NREKAEEVAEEARRRGSPLVAVLG 58
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
NL ++ + + L+NNAG+
Sbjct: 59 ANLLEAEAATALVHQAAEVLGGLDTLVNNAGI 90
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 78.4 bits (194), Expect = 1e-16
Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 42/221 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLG--CRSM------IRGQEALEKLKKEVQ 105
+ GKV ITGA G G A LA A ++ C + + E L K V+
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70
Query: 106 D--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHF 163
D +IV + ++ +S+ + + + ++ +++ NAG++ +G+
Sbjct: 71 DIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPM----SAGDDGWHDVI 126
Query: 164 GINHVGHFLLTNLLIERIQK------VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPA 217
+N G + + I + K +V++ S G G +
Sbjct: 127 DVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS------------SAGLAGVGSADPGSVG 174
Query: 218 YCNSK-----LMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
Y +K LM A + + V+ + P T
Sbjct: 175 YVAAKHGVVGLMR-----VYANLLAGQMIRVNSIHPSGVET 210
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 78.0 bits (193), Expect = 1e-16
Identities = 35/201 (17%), Positives = 78/201 (38%), Gaps = 22/201 (10%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
+GK+ ++T +SG+G+ +A ELA+ A ++L R+ + + A ++ V Q+ ++
Sbjct: 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLLT 174
++ I + + +L+ + G P + E ++ + + +
Sbjct: 66 DIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVG 124
Query: 175 NLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFG 229
E++ + +V +GS + + SN ++
Sbjct: 125 RRAAEQMVEKGWGRMVYIGSV------------TLLRPWQDLALSNIM--RLPVIG--VV 168
Query: 230 AELYLKYADKGVDVSVVCPGW 250
L L+ A GV V+ V P
Sbjct: 169 RTLALELAPHGVTVNAVLPSL 189
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 78.1 bits (193), Expect = 1e-16
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 21/142 (14%)
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD---G 107
++ E +ITG IG+ A L + VV+ R + A ++L E+ G
Sbjct: 6 HEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRH---SEGAAQRLVAELNAARAG 62
Query: 108 QIVLMELNLASFDSIKNFAKN----VMKQYPKIHVLINNAGV-----------SVPIKEK 152
VL + +L+ S+ + ++ + + + VL+NNA + +
Sbjct: 63 SAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADA 122
Query: 153 LTTKEGYEVHFGINHVGHFLLT 174
FG N V L
Sbjct: 123 KPIDAQVAELFGSNAVAPLFLI 144
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 77.4 bits (191), Expect = 2e-16
Identities = 39/243 (16%), Positives = 73/243 (30%), Gaps = 56/243 (23%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
+ +I+G +GIG T K L +V R E + L Q +
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDI---RDAEVIADLSTAEGRKQAI------ 52
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLLTNL 176
A + K + L+ AG+ + +N+ G L +
Sbjct: 53 ---------ADVLAKCSKGMDGLVLCAGLGPQ-------TKVLGNVVSVNYFGATELMDA 96
Query: 177 LIERIQK-----VVIVGS------------SLMDRGTIDFDNLNGEKGFVQKGHSNPAYC 219
+ ++K V++ S + + + N AY
Sbjct: 97 FLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYA 156
Query: 220 NSKLMNYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRH--ADIKFYQKVMIFP 271
SK A + + + GV ++ + PG T L + D ++ + + F
Sbjct: 157 GSK------NALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV 210
Query: 272 IAM 274
M
Sbjct: 211 PPM 213
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 77.2 bits (191), Expect = 2e-16
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 54 MEGKVCIITGA--NSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD---GQ 108
++GKV ++TGA G+G E A+ A++ A V + S + E+ KE++ +
Sbjct: 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYAS---RAQGAEENVKELEKTYGIK 74
Query: 109 IVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+ + S++S + K+V+ + +I I NAG
Sbjct: 75 AKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGA 111
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 76.9 bits (190), Expect = 2e-16
Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++ +V I+TGA+SG+G + LA+ ATV+ G+E +L +
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRN 59
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPI----KEKLTTKEGYEVHFGINHVG 169
++ + +++ +H L+N AG + + + + +N +G
Sbjct: 60 ADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIG 119
Query: 170 HFLLTNLLIERIQKVVIVGSSLMDRGTI 197
F + L E + + +RG I
Sbjct: 120 TFNMIRLAAEVMSQGEPDADG--ERGVI 145
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 77.2 bits (191), Expect = 3e-16
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVLM 112
+ V ++TG + GIG + A+ V + + +EA + + + + G+ V +
Sbjct: 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAA---NREAADAVVAAITESGGEAVAI 81
Query: 113 ELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV---SVPIKEKLTTKEGYEVHFGINHVG 169
++ + I V +Q+ ++ L+NNAG+ + E + E E +N G
Sbjct: 82 PGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDE--MSVERIERMLRVNVTG 139
Query: 170 HFLLT 174
L
Sbjct: 140 SILCA 144
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 76.8 bits (190), Expect = 3e-16
Identities = 49/239 (20%), Positives = 83/239 (34%), Gaps = 53/239 (22%)
Query: 35 RYFKSRSWSKLKASPFYKPM---EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMI 91
+ S + +++ M EGKV ++TGA GIG L A V + R++
Sbjct: 4 HHHHSSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA 63
Query: 92 RGQEALEKLKKEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PI 149
L + +L V ++ +++NNAGV I
Sbjct: 64 GIAADLH-------------LPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRI 110
Query: 150 KEKLTTKEGYEVHFGINHVGHFLLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNG 204
E TT + + G+N F + I + +V V S G
Sbjct: 111 TE--TTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVAS------------CWG 156
Query: 205 EKGFVQKGHSNPAYCNSKLMNYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFR 257
+ GH+ YC +K A + + +A +G+ ++ VCP T + R
Sbjct: 157 LRP--GPGHAL--YCLTK------AALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLR 205
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 76.1 bits (188), Expect = 6e-16
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++G V +ITG SG+G TA+ L A+ VL G+ +KL V
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAP 64
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIK------EKLTTKEGYEVHFGINH 167
++ S ++ ++ ++ V +N AG++V K + T E ++ +N
Sbjct: 65 ADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 124
Query: 168 VGHFLLTNLLIERIQKVVIVGSSLMDRGTI 197
+G F + L+ + + RG I
Sbjct: 125 MGTFNVIRLVAGEMGQNEPDQGG--QRGVI 152
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 76.1 bits (188), Expect = 7e-16
Identities = 43/222 (19%), Positives = 77/222 (34%), Gaps = 43/222 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLG--CRSMIRG-------QEALEKLKKEV 104
+EG+V ITGA G G A +A A ++ + + L + + V
Sbjct: 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68
Query: 105 QD--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVH 162
+ +IV ++ FD ++ + + ++ +++ NAGV+ P T E +
Sbjct: 69 EAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV 128
Query: 163 FGINHVGHFLLTN----LLIERIQ--KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNP 216
IN G + +IE + ++++ S G K H
Sbjct: 129 MDINVTGTWNTVMAGAPRIIEGGRGGSIILISS------------AAGMKMQPFMIH--- 173
Query: 217 AYCNSK-----LMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
Y SK L + + V+ V PG T
Sbjct: 174 -YTASKHAVTGLAR-----AFAAELGKHSIRVNSVHPGPVNT 209
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 75.3 bits (186), Expect = 9e-16
Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 47/208 (22%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
GK +TGA GIGY TA + A V ++ + EV +
Sbjct: 6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQA---FTQEQYPFATEV---------M 53
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL---TTKEGYEVHFGINHVGHF 171
++A + + ++ + ++ L+N AG+ ++ +KE ++ F +N G F
Sbjct: 54 DVADAAQVAQVCQRLLAETERLDALVNAAGI---LRMGATDQLSKEDWQQTFAVNVGGAF 110
Query: 172 LLTNLLIERIQK-----VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK---- 222
L + + ++ +V V S + G S Y SK
Sbjct: 111 NLFQQTMNQFRRQRGGAIVTVAS------------DAAHTPRI--GMSA--YGASKAALK 154
Query: 223 LMNYYFGAELYLKYADKGVDVSVVCPGW 250
+ G EL A GV +VV PG
Sbjct: 155 SLALSVGLEL----AGSGVRCNVVSPGS 178
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 75.7 bits (187), Expect = 9e-16
Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 43/222 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLG--CRSMIRG-------QEALEKLKKEV 104
++G+V ITGA G G A LA A ++ C + E L++ + V
Sbjct: 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLV 72
Query: 105 QD--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVH 162
+D + + L++ +++ + M+Q+ ++ V++ NAGV + T E ++
Sbjct: 73 EDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTV 132
Query: 163 FGINHVGHFLLTN----LLIERIQ--KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNP 216
G+N G + +IE +V+V S G K GH
Sbjct: 133 IGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS------------SAGLKATPGNGH--- 177
Query: 217 AYCNSK-----LMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
Y SK L N L ++ + G+ V+ + P T
Sbjct: 178 -YSASKHGLTALTN-----TLAIELGEYGIRVNSIHPYSVET 213
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 75.4 bits (186), Expect = 1e-15
Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 49/266 (18%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
EG I++G G+G T + L VV+ + +G+ ++L + +
Sbjct: 29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVST 83
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEG-------YEVHFGINH 167
N+ S DS+ + + + ++ + G V +++ ++G + +
Sbjct: 84 NVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVA--QRIVQRDGSPADMGGFTKTIDLYL 141
Query: 168 VGHFLLTNLLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFV-QKGHSNPAYCNSK---- 222
G + + L+ I + +RG + G+ Q G + AY +K
Sbjct: 142 NGTYNVARLVAASIAAAEPRENG--ERGAL--VLTASIAGYEGQIGQT--AYAAAKAGVI 195
Query: 223 LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKV--MI-FP-------- 271
+ +L + G+ V+ + PG T + + K I FP
Sbjct: 196 GLTIAAARDL----SSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTPDE 251
Query: 272 IAMMVVIVGSSLMDRGTIDFDNLNGE 297
A + ++ +NGE
Sbjct: 252 FADAAAFLLTNGY---------INGE 268
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 74.9 bits (185), Expect = 1e-15
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 41/214 (19%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD--GQIVLM 112
G+ ++TGA SGIG A A+ A V+ R+ + ++++ E+ D G +
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-----DGVKEVADEIADGGGSAEAV 84
Query: 113 ELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS--VPIKEKLTTKEGYEVHFGINHVGH 170
+LA + N A+ + ++ VL+NNAG+ P +E + + +N
Sbjct: 85 VADLADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEE--VSLGRWREVLTVNLDAA 141
Query: 171 FLLTNLLIERIQKVVIVGSSLMDRGT---IDFDNLNGEKGFVQKGHSNPAYCNSKLMNYY 227
++L+ G++++ G+ + ++ +G G + AY SK
Sbjct: 142 WVLSRS----------FGTAMLAHGSGRIVTIASMLSFQG----GRNVAAYAASK----- 182
Query: 228 FGAELYL------KYADKGVDVSVVCPGWCYTNL 255
A + L ++A +GV V+ + PG+ T
Sbjct: 183 -HAVVGLTRALASEWAGRGVGVNALAPGYVVTAN 215
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 75.3 bits (186), Expect = 1e-15
Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 47/224 (20%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLG--CRSM------IRGQEALEKLKKEVQ 105
+EGKV ITGA G G A LA+ A ++ C+ + + + L + ++V+
Sbjct: 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE 85
Query: 106 D--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS---VPIKEKLTTKEGYE 160
+I+ ++++ FD+++ + + Q ++ +++ NA ++ + + +
Sbjct: 86 ALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNR--MDPKTWR 143
Query: 161 VHFGINHVGHFLLTNLLIERIQK------VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHS 214
+N G ++ + I I +V S + G +G G+
Sbjct: 144 DMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS------------IGGLRGAENIGN- 190
Query: 215 NPAYCNSK-----LMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
Y SK LM + L+ + + V++VCP T
Sbjct: 191 ---YIASKHGLHGLMR-----TMALELGPRNIRVNIVCPSSVAT 226
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 74.1 bits (183), Expect = 2e-15
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ GK +ITGA+SGIG A+ L KL + V++ + +E L+ L ++ +
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN----EEKLKSLGNALK-DNYTIEV 66
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
NLA+ + N + + + +L+ NAG+
Sbjct: 67 CNLANKEECSNL----ISKTSNLDILVCNAGI 94
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 74.1 bits (183), Expect = 2e-15
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
+ + ++TG N GIG A+ A V + RS E E +
Sbjct: 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS----GEPPEG---------FLA 63
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
++ ++ + ++ K + + + + VLI NAGV
Sbjct: 64 VKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV 97
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 73.7 bits (182), Expect = 3e-15
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 53 PMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLM 112
P + ++TG N GIG A+ LA V + R + +
Sbjct: 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG-------------SGAPKGLFGV 58
Query: 113 ELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
E+++ D++ V + + VL++NAG+
Sbjct: 59 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL 91
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 73.4 bits (181), Expect = 4e-15
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
I+T G +A L++ TV S + ++L+ + +L
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDES----FKQKDELEAFAETY----PQLKP 53
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
S + V Y ++ VL++N
Sbjct: 54 MSEQEPAELIEAVTSAYGQVDVLVSNDIF 82
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 73.7 bits (182), Expect = 5e-15
Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 40/222 (18%)
Query: 49 PFYKP---MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQ 105
P YK ++GK +ITG +SGIG + AK A + + + + K+ V+
Sbjct: 37 PNYKGSEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLD---EEGDANETKQYVE 93
Query: 106 D--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIK--EKLTTKEGYEV 161
+ VL+ +L+ K+ + ++Q +++L+NN P + E +T ++ E
Sbjct: 94 KEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQ-LEK 152
Query: 162 HFGINHVGHFLLTNLLIERIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNS 221
F IN +F +T + +++ G +++ +I +G N
Sbjct: 153 TFRINIFSYFHVTKAALSHLKQ----GDVIINTASI-----VAYEG------------NE 191
Query: 222 KLMNY--------YFGAELYLKYADKGVDVSVVCPGWCYTNL 255
L++Y F L KG+ V+ V PG +T L
Sbjct: 192 TLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPL 233
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 73.4 bits (181), Expect = 6e-15
Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 51/233 (21%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLG--CRSM----------IRGQEALEKLK 101
+EGKV +TGA G G A LA+ A ++ C+ + E L +
Sbjct: 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68
Query: 102 KEVQD--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVS---VPIKEKLTTK 156
V+ +IV E+++ +D++K + ++Q ++ +++ NAG+ + + T++
Sbjct: 69 DLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDK--TSE 126
Query: 157 EGYEVHFGINHVGHFLLTNLLIERIQK------VVIVGSSLMDRGTIDFDNLNGEKGFVQ 210
E + IN G + + + +++ S + G K +
Sbjct: 127 EDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS------------VGGLKAYPH 174
Query: 211 KGHSNPAYCNSK-----LMNYYFGAELYLKYADKGVDVSVVCPGWCYTNLFRH 258
GH Y +K LM + ++ + V+ V P T + +
Sbjct: 175 TGH----YVAAKHGVVGLMRAF--G---VELGQHMIRVNSVHPTHVKTPMLHN 218
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 73.0 bits (180), Expect = 1e-14
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 49 PFYKP---MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQ 105
Y ++ + ++TG +SGIG A A+ A V + +E +++K ++
Sbjct: 39 KSYVGSGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP--AEEEDAQQVKALIE 96
Query: 106 D--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIK--EKLTTKEGYEV 161
+ + VL+ +L+ ++ + + +L AG I + LT+ E ++
Sbjct: 97 ECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTS-EQFQQ 155
Query: 162 HFGINHVGHFLLT 174
F +N F +T
Sbjct: 156 TFAVNVFALFWIT 168
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 71.6 bits (176), Expect = 1e-14
Identities = 22/210 (10%), Positives = 49/210 (23%), Gaps = 32/210 (15%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
M I+ G +G + K TV+ S + + +V
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS---ANDQAD-------SNILVDGN 50
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIK-EKLTTKEGYEVHFGINHVGHFL 172
N + Q ++ + AG + ++ + +
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110
Query: 173 LTNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK--LMNYY 227
L ++ + + G++ S Y +K + +
Sbjct: 111 AAKLATTHLKPGGLLQLTGAAAAMGP----------------TPSMIGYGMAKAAVHHLT 154
Query: 228 FGAELYLKYADKGVDVSVVCPGWCYTNLFR 257
V + P T + R
Sbjct: 155 SSLAAKDSGLPDNSAVLTIMPVTLDTPMNR 184
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 72.7 bits (179), Expect = 2e-14
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 42/221 (19%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLG--CRSM------IRGQEALEKLKKEVQ 105
++GKV ITGA G G A LA+ A +V CR E L++ + V+
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103
Query: 106 D--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHF 163
+ +I+ + ++ S++ + ++ I +L++N G+S + T + +
Sbjct: 104 EQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDIL 163
Query: 164 GINHVGHFLLTN----LLIERIQ--KVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPA 217
N +G + +IER Q V+ V S G +G G S+
Sbjct: 164 QTNLIGAWHACRAVLPSMIERGQGGSVIFVSS------------TVGLRG--APGQSH-- 207
Query: 218 YCNSK-----LMNYYFGAELYLKYADKGVDVSVVCPGWCYT 253
Y SK LM E+ + V+ V PG T
Sbjct: 208 YAASKHGVQGLML-SLANEV----GRHNIRVNSVNPGAVNT 243
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 71.0 bits (175), Expect = 3e-14
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
+ ++T A G + L + TVV S +A E+ + E ++
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDAS---FADAAERQRFESENPG-----TIA 53
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGVS-----VPIKEKLTTKEGYEVHFGINHVGHF 171
+ + ++ I +++N + +P++ T++ F +
Sbjct: 54 LAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEG--TSEADIRQMFEALSIFPI 111
Query: 172 LLT 174
LL
Sbjct: 112 LLL 114
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 71.1 bits (175), Expect = 3e-14
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 52 KPM--EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQI 109
M V ++TG SG+G T K L A VV+ IRG++ + L +
Sbjct: 3 GSMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVV---LDIRGEDVVADL-----GDRA 54
Query: 110 VLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPI----KEKLTTKEGYEVHFGI 165
++ ++ + A ++ + + +++N AG I ++ + + + I
Sbjct: 55 RFAAADVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDI 113
Query: 166 NHVGHFLLTNLLIERIQKVVIVGSSLMDRGTI 197
N VG F + L ERI K VG + +RG I
Sbjct: 114 NLVGSFNVLRLAAERIAKTEPVGPNAEERGVI 145
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 72.0 bits (177), Expect = 3e-14
Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 45/211 (21%)
Query: 57 KVCIITGANSGIGYETAKELAKLKA---TVVLGCRSMIRGQEALEKLKKEVQDGQIVLM- 112
V +ITG +SGIG A LA + V R + E + +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 113 ELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGH 170
+L++ S+ + V + ++ VL+ NAG+ + P++ ++ +N VG
Sbjct: 63 QLDVRDSKSVAAARERVTEG--RVDVLVCNAGLGLLGPLEA--LGEDAVASVLDVNVVGT 118
Query: 171 FLLTNLLIE--RIQK--VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNP---AYCNSKL 223
+ + + + V+V S+ G + P YC SK
Sbjct: 119 VRMLQAFLPDMKRRGSGRVLVTGSVG--------------GLM----GLPFNDVYCASK- 159
Query: 224 MNYYFGAE-----LYLKYADKGVDVSVVCPG 249
F E L + GV +S++ G
Sbjct: 160 ----FALEGLCESLAVLLLPFGVHLSLIECG 186
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 70.4 bits (173), Expect = 3e-14
Identities = 22/209 (10%), Positives = 56/209 (26%), Gaps = 32/209 (15%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMEL 114
E + ++ G +G + V +EA + ++ D
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV--ENEEASASVIVKMTDS------- 56
Query: 115 NLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKL-TTKEGYEVHFGINHVGHFLL 173
D + ++ K+ ++ AG K + + ++ + + +
Sbjct: 57 FTEQADQVTAEVGKLL-GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 115
Query: 174 TNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSK--LMNYYF 228
++L + +++ + + G+ G Y +K +
Sbjct: 116 SHLATKHLKEGGLLTLAGA------------KAALDGTPGMI----GYGMAKGAVHQLCQ 159
Query: 229 GAELYLKYADKGVDVSVVCPGWCYTNLFR 257
G V P T + R
Sbjct: 160 SLAGKNSGMPSGAAAIAVLPVTLDTPMNR 188
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 70.3 bits (173), Expect = 5e-14
Identities = 51/243 (20%), Positives = 79/243 (32%), Gaps = 58/243 (23%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
V ITG+ SGIG + LA+ TV+ R + L G+ + L
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTP-----GGRETAVAAVL 56
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLLTNL 176
+ + L+ AGV V T + +N+ G L +
Sbjct: 57 DRCGGV-------------LDGLVCCAGVGV-------TAANSGLVVAVNYFGVSALLDG 96
Query: 177 LIERI-----QKVVIVGSS------------LMDRGTIDFDNLNGEKGFVQKGHSNPAYC 219
L E + VIVGS + D G ++ AY
Sbjct: 97 LAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQ--GQTHLAYA 154
Query: 220 NSKLMNYYFGA------ELYLKYADKGVDVSVVCPGWCYTNLFRH--ADIKFYQKVMIFP 271
SK A + +A +GV ++VV PG T L + AD ++ + F
Sbjct: 155 GSK------YAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRYGESTRRFV 208
Query: 272 IAM 274
+
Sbjct: 209 APL 211
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 68.1 bits (167), Expect = 1e-13
Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 68/210 (32%)
Query: 56 GKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELN 115
++ GA+ +G + L K KA V+ R + ++
Sbjct: 3 AMKILLIGASGTLGSAVKERLEK-KAEVITAGRH----SGDV---------------TVD 42
Query: 116 LASFDSIKNFAKNVMKQYPKIHVLINNAGVS--VPIKEKLTTKEGYEVHFGINHVGHFLL 173
+ + DSIK +Q K+ +++ G + P+ E T E V G L
Sbjct: 43 ITNIDSIKKMY----EQVGKVDAIVSATGSATFSPLTE--LTPEKNAVTISSKLGGQINL 96
Query: 174 TNLLIERIQK---VVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFGA 230
L I+ + + +M+ + + + GA
Sbjct: 97 VLLGIDSLNDKGSFTLTTGIMMEDPI--------------VQGA--SAAMAN------GA 134
Query: 231 ----------ELYLKYADKGVDVSVVCPGW 250
E+ +G+ ++ V P
Sbjct: 135 VTAFAKSAAIEM-----PRGIRINTVSPNV 159
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 68.9 bits (169), Expect = 2e-13
Identities = 21/154 (13%), Positives = 36/154 (23%), Gaps = 37/154 (24%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQ--------- 105
V ++TGA +G A+ L V L L +
Sbjct: 8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR---SAAEANALSATLNARRPNSAIT 64
Query: 106 -----------DGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVP------ 148
+ F + + VL+NNA P
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 149 --------IKEKLTTKEGYEVHFGINHVGHFLLT 174
+ ++ + FG N + + L
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 69.0 bits (169), Expect = 3e-13
Identities = 21/154 (13%), Positives = 36/154 (23%), Gaps = 37/154 (24%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQ--------- 105
V ++TGA +G A+ L V L L +
Sbjct: 45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR---SAAEANALSATLNARRPNSAIT 101
Query: 106 -----------DGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVP------ 148
+ F + + VL+NNA P
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 149 --------IKEKLTTKEGYEVHFGINHVGHFLLT 174
+ ++ + FG N + + L
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 195
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 68.3 bits (168), Expect = 3e-13
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVL--GCRSMIRGQ------EALEKLKKEVQ 105
EGK +ITG G+G A LA+ A + + C + + L + V+
Sbjct: 8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVE 67
Query: 106 D--GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
+ + ++++ ++++F I + I NAG+
Sbjct: 68 KTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGI 109
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 67.3 bits (165), Expect = 7e-13
Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 44/214 (20%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
KV ++TGA+SG G A+ TV+ R EAL+ L D + L++
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT----EALDDLVAAYPDRAEAI-SLDV 60
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGVSV--PIKEKLTTKEGYEVHFGINHVGHFLLT 174
+ I A +V+ +Y ++ VL+NNAG + +E TT+ F ++ G LT
Sbjct: 61 TDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEE--TTERELRDLFELHVFGPARLT 118
Query: 175 NLLIE--RIQKVVIVGSSLMDRGTIDFDNLN-----GEKGFVQKGHSNPAYCNSKLMNYY 227
L+ R + G++ +N G+ F AY +K
Sbjct: 119 RALLPQMRERG----------SGSV----VNISSFGGQLSFAGFS----AYSATK----- 155
Query: 228 FGAE-----LYLKYADKGVDVSVVCPGWCYTNLF 256
E L + A G+ V +V PG TNLF
Sbjct: 156 AALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLF 189
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 65.6 bits (161), Expect = 2e-12
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ K ++ A+ GIG A L++ A V + R+ +E L++ +V
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN----EELLKRSGHRY----VVC-- 66
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINNAG 144
++ + ++ ++ +L+ NAG
Sbjct: 67 -------DLRKDLDLLFEKVKEVDILVLNAG 90
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 65.2 bits (160), Expect = 3e-12
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
+ ++TG + GIG A+ L V + R+ ++L +
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTD----------- 51
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
D K K ++ +HVL++ A V
Sbjct: 52 LEKDDPKGLVKRALEALGGLHVLVHAAAV 80
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 63.9 bits (156), Expect = 1e-11
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVV---LGCRSMIRG---QEALEKLKKEVQD- 106
++G+V I+TGA GIG A A A VV +G A + + E+
Sbjct: 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA 84
Query: 107 -GQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGV 145
G+ V N+A +D + ++ + + VL+NNAG+
Sbjct: 85 GGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGI 124
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 62.2 bits (151), Expect = 5e-11
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 25/145 (17%)
Query: 54 MEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
++GK ++ +G +A LA A VVL R + + Q A + + K ++ +
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTA 173
Query: 114 LNLASFDSIKNFAKNVMKQYPKIHVLINN--AGVSVPIKEKLTTKEGYEVHFGINHVGHF 171
A S K H + G+ + + + E+ N
Sbjct: 174 AETADDASRAEAVKGA-------HFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226
Query: 172 LLTNLLIERIQKVVIVGSSLMDRGT 196
I G D+G
Sbjct: 227 -------------GIGGIDATDKGK 238
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 60.3 bits (147), Expect = 9e-11
Identities = 43/218 (19%), Positives = 75/218 (34%), Gaps = 54/218 (24%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNL 116
+ ++TG SG+G A L VV+ L + ++ +E ++
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVV--------------LDLRREGEDLIYVEGDV 48
Query: 117 ASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPI----KEKLTTKEGYEVHFGINHVGHFL 172
+ ++ ++ + +++ AGV + KE E + +N +G F
Sbjct: 49 TREEDVRRAVARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFN 107
Query: 173 LTNLLIERIQKVVIVGSSLMDRGTIDFDNLN-----GEKGFVQKGHSNPAYCNSKLMNYY 227
+ L +++ RG I +N +G Q G + AY SK
Sbjct: 108 VLRLAAWAMRENPPDAEG--QRGVI----VNTASVAAFEG--QIGQA--AYAASK----- 152
Query: 228 FGA----------ELYLKYADKGVDVSVVCPGWCYTNL 255
G EL A G+ V V PG T L
Sbjct: 153 -GGVVALTLPAAREL----AGWGIRVVTVAPGLFDTPL 185
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 61.2 bits (149), Expect = 1e-10
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVV---LGCRSMIRG--QEALEKLKKEVQD--G 107
+G+V ++TGA G+G A A+ A VV LG G A +K+ +E++ G
Sbjct: 8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG 67
Query: 108 QIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINH 167
+ V N S ++ + K + + +I V++NNAG+ + E +++ ++
Sbjct: 68 KAV---ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHL 124
Query: 168 VGHFLLT 174
G F +T
Sbjct: 125 RGSFQVT 131
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 61.6 bits (150), Expect = 1e-10
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVV---LGCRSMIRG--QEALEKLKKEVQD--G 107
+ KV IITGA G+G + E AKL A VV LG +G +A + + E+ G
Sbjct: 7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGG 66
Query: 108 QIVLMELNLASFDSIKNFAKNV---MKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFG 164
V A ++++ + K V +K + +HV+INNAG+ K T++ Y++
Sbjct: 67 VAV------ADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVID 120
Query: 165 INHVGHFLLT 174
++ G F +T
Sbjct: 121 VHLNGAFAVT 130
Score = 49.3 bits (118), Expect = 1e-06
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 24/138 (17%)
Query: 46 KASPFYKPMEGKVCIITGANSGIGYETAKELAKLKATVV---LGCRSMIRGQEALEKLKK 102
+ ++ KV +ITGA +G+G E AK AK A VV K
Sbjct: 312 ASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK---------DATKTVD 362
Query: 103 EVQD--GQIVLMELNLASFDSIKNFAKNVMKQ----YPKIHVLINNAGVSVPIKEKLTTK 156
E++ G+ + ++ ++K Y I +L+NNAG+ +K
Sbjct: 363 EIKAAGGEAW------PDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSK 416
Query: 157 EGYEVHFGINHVGHFLLT 174
+ ++ ++ +G F L+
Sbjct: 417 QEWDSVQQVHLIGTFNLS 434
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 60.6 bits (147), Expect = 3e-10
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 16/101 (15%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLKATVV---LGCRSMIRG--QEALEKLKKEVQD--G 107
+G+V ++TGA +G+G E A A+ A VV LG G Q A + + E++ G
Sbjct: 18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG 77
Query: 108 QIVLMELNLASFDSIKNFAKNV---MKQYPKIHVLINNAGV 145
+ V A ++S+ + AK + +K + ++ +L+NNAG+
Sbjct: 78 EAV------ADYNSVIDGAKVIETAIKAFGRVDILVNNAGI 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 2e-07
Identities = 85/454 (18%), Positives = 140/454 (30%), Gaps = 155/454 (34%)
Query: 2 LTNILSFF-----RDNDKLLLHSLLYT------TTITLSALVISRYFKSRSWSKLKASPF 50
L L+ F ND +H+L TT+ + +I Y +R +K PF
Sbjct: 84 LNLCLTEFENCYLEGND---IHALAAKLLQENDTTLVKTKELIKNYITARIMAK---RPF 137
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD---- 106
K + G A+L A + G GQ + +E++D
Sbjct: 138 DKKSNSA--LFRAVGEGN--------AQLVA--IFG------GQGNTDDYFEELRDLYQT 179
Query: 107 -----GQIV------LMELNLASFDSIKNFAK--NVMK------QYPKIHVLINNAGVSV 147
G ++ L EL + D+ K F + N+++ P L+ + +S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL-SIPISC 238
Query: 148 PIKEKLTTKEGYEVHFGINHVGHFLLTNLLIERIQKVVIVGSSLMDRGTIDFDNLNGEKG 207
P+ G+ + H+++T ++G G + L G G
Sbjct: 239 PL-------------IGVIQLAHYVVT---------AKLLG---FTPGEL-RSYLKGATG 272
Query: 208 ---------FVQKGHSNPA-YCNS-KLMNYYF--GAELYLKYADKGVDVSVV-------- 246
+ + S + + + K + F G Y Y + + S++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 247 ---CPGWCYTNLFRHADIKFYQKV-MIFPIAMMVVIVGSSLMDRGTIDFDNLNGEKGFVQ 302
P +NL + + K P V I SL +NG K V
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---SL----------VNGAKNLVV 379
Query: 303 KGHSNPAYCNSKLMNYYFGAELYLKYADKGVDVCVVCPGWCYTNLFRHADIKFYQKVMIF 362
G P L Y L A G+D + P F +KF F
Sbjct: 380 SGP--PQS----L--YGLNLTLRKAKAPSGLDQSRI-P-------FSERKLKF---SNRF 420
Query: 363 -PIAM----MYMRSANQL--------EVLFKKDD 383
P+A + A+ L V F D
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 43.1 bits (102), Expect = 9e-05
Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 40/214 (18%)
Query: 47 ASPFYKPMEG-KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQ 105
P +P K + GA +G+ A+ + + + R +++L
Sbjct: 4 EQPLSRPGAHVKYAV-LGATGLLGHHAARAIRAAGHDL----VLIHRPSSQIQRLA---- 54
Query: 106 DGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGI 165
+ + ++ + + +I +AG P + + ++
Sbjct: 55 YLEPECRVAEMLDHAGLERALRGL-------DGVIFSAGY-YPSRPR-----RWQEEVAS 101
Query: 166 NHVGHFLLTNLLIE-----RIQKVVIVGS-SLMDRGTIDFDNLNGEKGFVQKGHSNPAYC 219
TN R+ +++ VGS M R + + +Y
Sbjct: 102 ALGQ----TNPFYAACLQARVPRILYVGSAYAMPRHP-QGLPGHEGLFYDSLPSGKSSYV 156
Query: 220 NSKLMNYYFGAELY-LKYADKGVDVSVVCPGWCY 252
K + + A G+ V + PG
Sbjct: 157 LCKWA-----LDEQAREQARNGLPVVIGIPGMVL 185
Score = 36.5 bits (85), Expect = 0.011
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 6/42 (14%)
Query: 304 GHSNPAYCNSKLMNYYFGAELY-LKYADKGVDVCVVCPGWCY 344
+Y K + + A G+ V + PG
Sbjct: 149 PSGKSSYVLCKWA-----LDEQAREQARNGLPVVIGIPGMVL 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 2e-04
Identities = 53/466 (11%), Positives = 112/466 (24%), Gaps = 168/466 (36%)
Query: 1 MLTNILSFFRDNDK-LLLHSLLYTTTITLSALVISRYFKSRS-----------WSK--LK 46
ML +L N HS I + R KS+ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 47 ASPFYKPMEGKVC--IITGANSGI-------------------GY---ETAKELAKLKAT 82
A C ++T + E L K
Sbjct: 261 A------FNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---- 309
Query: 83 VVLGCRSMIRGQEALEKLKKEVQDG-----------------------QIVLMELNLASF 119
L CR + L +EV + +L
Sbjct: 310 -YLDCR--------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 120 DSIKNFAKNVMKQ-YPKIHVLINNAGVSVPIKEKL-----TTKEGYEVHFGINHVGHFLL 173
S+ ++ + ++ V + I L +V +N L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPS----AHIPTILLSLIWFDVIKSDVMVVVNK----LH 412
Query: 174 TNLLIERIQKVVIVGSSLMDRGTIDFD---NLNGE----KGFVQKGHSNPAYCNSKLM-- 224
L+E+ K + S+ I + L E + V + + + L+
Sbjct: 413 KYSLVEKQPKESTI--SIPS---IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 225 ---NYYFGAELYLKY-------ADKGVDVSVVCPGWCYTNLFRHA--DIKFYQKVMIFPI 272
Y++ ++ + ++ LFR D +F ++ +
Sbjct: 468 YLDQYFY---SHIGHHLKNIEHPER-------------MTLFRMVFLDFRFLEQKIRH-- 509
Query: 273 AMMVVIVGSSLMDRGTI--DFDNLNGEKGFVQKGHSNPAYCNSKLMNYYFGAELYLKYAD 330
++ G+I L K ++ + ++++ E
Sbjct: 510 ------DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE------- 556
Query: 331 KGVDVCVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMYMRSANQLE 376
NL + ++ ++ + Q++
Sbjct: 557 --------------ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 41.8 bits (99), Expect = 2e-04
Identities = 16/90 (17%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 54 MEGKVCIITG-AN--SGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIV 110
+EG+ ++ G AN S I + A+ L + A ++ R ++++ +L + +
Sbjct: 5 LEGRNIVVMGVANKRS-IAWGIARSLHEAGARLIFTYAGE-RLEKSVHELAGTLDRNDSI 62
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLI 140
++ ++ + I+ ++ +Q IH +
Sbjct: 63 ILPCDVTNDAEIETCFASIKEQVGVIHGIA 92
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 39.5 bits (93), Expect = 0.001
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 54 MEGKVCIITG-AN--SGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIV 110
+E K +I G AN S I + AK L +L A +V R R ++ LEKL +++ +
Sbjct: 30 LENKTYVIMGIANKRS-IAFGVAKVLDQLGAKLVFTYRKE-RSRKELEKLLEQLNQPEAH 87
Query: 111 LMELNLASFDSIKNFAKNVMKQYPKIHVLI 140
L ++++ S + + N + + K I +
Sbjct: 88 LYQIDVQSDEEVINGFEQIGKDVGNIDGVY 117
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 36.8 bits (85), Expect = 0.015
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 56 GKVCIITGANSG-IGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQD-----GQI 109
K +ITGA G IG E + L + A VV+ + + + + +
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK--QVTDYYQSIYAKYGAKGSTL 533
Query: 110 VLMELNLASFDSIKNFAK 127
+++ N S ++ +
Sbjct: 534 IVVPFNQGSKQDVEALIE 551
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex,
response regulator, receiver domain, two-component
signal transduction; HET: BFD; 1.96A {Borrelia
burgdorferi}
Length = 157
Score = 34.9 bits (80), Expect = 0.019
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 93 GQEALEKLKKEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNA 143
G+EA+ K K + IV + + + D I N+M+ V++ +A
Sbjct: 70 GEEAVIKYKNHYPNIDIVTLXITMPKMDGIT-CLSNIMEFDKNARVIMISA 119
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 33.9 bits (78), Expect = 0.055
Identities = 31/234 (13%), Positives = 69/234 (29%), Gaps = 51/234 (21%)
Query: 54 MEG--KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
ME K+ + GA+ +G E V +++R E ++ + ++ +
Sbjct: 1 MEKVKKIVL-IGASGFVGSALLNEALNRGFEV----TAVVRHPEKIKIENEHLK-----V 50
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHF 171
+ +++S D + K +I+ +
Sbjct: 51 KKADVSSLDEVCEVCKGA-------DAVISAFNPGWNNPDIYDE--------------TI 89
Query: 172 LLTNLLIE-----RIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
+ +I+ + + ++VG + G++ G + K +
Sbjct: 90 KVYLTIIDGVKKAGVNRFLMVGGA----GSLFIAP--GLRLMDSGEVPENILPGVKAL-- 141
Query: 227 YFGAELYLKY--ADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVI 278
E YL + +K +D P R + + MI I I
Sbjct: 142 ---GEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYRLGKDDMIVDIVGNSHI 192
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 34.2 bits (79), Expect = 0.059
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLK-ATVVLGCRSMIRGQEALEKLKK 102
G I +NSG+G ++A + R Q+ ++LK
Sbjct: 167 PGDSVIQNASNSGVGQ-AVIQIAAALGLRTINVVRDRPDIQKLSDRLKS 214
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 33.5 bits (77), Expect = 0.12
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 60 IITGANSGIGYETAKELAKLK-ATVVLGCRSMIRGQEALEKLKK 102
I G S +G + A ++ KL + R E + LK+
Sbjct: 172 IQNGGTSAVG-KYASQIGKLLNFNSISVIRDRPNLDEVVASLKE 214
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 32.5 bits (74), Expect = 0.19
Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 51/237 (21%)
Query: 61 ITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLMELNLASFD 120
+TGA+ G K+L + + + ++R + EK+ E + ++ D
Sbjct: 9 VTGASGRTGQIVYKKL--KEGSDKFVAKGLVRSAQGKEKIGGEAD-----VFIGDITDAD 61
Query: 121 SIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHFLLTNL---- 176
SI + + L+ +K +G F + +
Sbjct: 62 SINPAFQGI-------DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQK 114
Query: 177 -LIE-----RIQKVVIVGSSLMDRGTIDFDNLNGEK-GFVQKGHSNPAYCNSKLMNYYFG 229
I+ ++ +V+VGS + G N K
Sbjct: 115 NQIDAAKVAGVKHIVVVGS------------MGGTNPDHPLNKLGNGNILVWKRK----- 157
Query: 230 AELYLKYADKGVDVSVVCPGWCYTNLFRHADIKFYQKVMIFPIAMMVVIVGSSLMDR 286
AE YL D G +++ G + ++ ++ + + R
Sbjct: 158 AEQYLA--DSGTPYTIIRAGGLLDKEGG-------VRELLVGKDDELLQTDTKTVPR 205
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 32.2 bits (74), Expect = 0.29
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 55 EGKVCIITGANSGIGYETAKELAKLK-ATVVLGCRSMIRGQEALEKLKK 102
K ++T S + + LAK + ++ R E + LK
Sbjct: 164 GEKAFVMTAGASQLC-KLIIGLAKEEGFRPIVTVRR----DEQIALLKD 207
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 30.4 bits (69), Expect = 0.75
Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 56/204 (27%)
Query: 52 KPMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVL 111
+ M +V ++ GAN + EL +M+R +E +L++ G +
Sbjct: 20 QGM--RV-LVVGANGKVARYLLSELKNKGHEP----VAMVRNEEQGPELRE---RGASDI 69
Query: 112 MELNLASFDSIKNFAKNVMKQYPKIHVLINNAGVSVPIKEKLTTKEGYEVHFGINHVGHF 171
+ NL + + ++ ++ AG G + I+ G
Sbjct: 70 VVANLE--EDFSHAFASI-------DAVVFAAGS--------GPHTGADKTILIDLWG-- 110
Query: 172 LLTNLLIE-----RIQKVVIVGSSLMDRGTIDFDNLNGEKGFVQKGHSNPAYCNSKLMNY 226
I+ I++ ++V S N+ Y +K +
Sbjct: 111 --AIKTIQEAEKRGIKRFIMVSSVGTVDPDQGPMNM-------------RHYLVAKRL-- 153
Query: 227 YFGAELYLKYADKGVDVSVVCPGW 250
A+ LK +D ++V PG
Sbjct: 154 ---ADDELK--RSSLDYTIVRPGP 172
>3crn_A Response regulator receiver domain protein, CHEY-; structural
genomics, signal regulator receiver domain; HET: PHD;
1.58A {Methanospirillum hungatei jf-1}
Length = 132
Score = 29.3 bits (66), Expect = 1.1
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 93 GQEALEKLKKEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLINNA 143
E L K++ E + + L + L + + + K P + ++
Sbjct: 36 AGEGLAKIENEFFN--LALFXIKLPDMEGTE-LLEKAHKLRPGMKKIMVTG 83
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 30.5 bits (69), Expect = 1.1
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 53 PMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEK 99
P +G + +G G + KE T++L +++ ++ +++
Sbjct: 260 PADGHYRMYSG---GTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQE 303
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 53 PMEGKVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEK 99
P +G+ + G G E K+ TV+L + + ++ +E
Sbjct: 264 PADGQFRMYAG---GTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEG 307
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.1 bits (66), Expect = 1.7
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDG----QIVLM 112
KV II G Y A+ + K VV+ + +E +KLK + G + +L
Sbjct: 2 KVIIIGGET--TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILR 59
Query: 113 ELNLASFD 120
+ ++ D
Sbjct: 60 DAEVSKND 67
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A
{Mus musculus}
Length = 168
Score = 29.0 bits (66), Expect = 1.8
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKE 103
+V +I+ KL + + +++ +KE
Sbjct: 54 EVRLISERACSK---QTLSALKLDCKTEVSVSDKL---ATVDEWRKE 94
>3mmz_A Putative HAD family hydrolase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.84A {Streptomyces avermitilis}
Length = 176
Score = 28.7 bits (65), Expect = 2.0
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 57 KVCIITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKKE 103
+ I++ + + A KLK V+ G AL++ +E
Sbjct: 57 TMLILSTEQNPV---VAARARKLKIPVLHGIDRKD---LALKQWCEE 97
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.4 bits (66), Expect = 2.0
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 51 YKPMEGK-VCIITGANSGIGYETAKELAKLKATVVLGCRS 89
+ +I G SG + A +LAK + + L +
Sbjct: 161 FDNFNKGQYVVIGGNESGF--DAAYQLAKNGSDIALYTST 198
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II,
11231J, structur genomics, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 304
Score = 28.5 bits (64), Expect = 3.3
Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 55 EGKVCIITGANSGI-GYETAKELAKLKATVVLGCRSMIRGQEALEKLKKEVQDGQIVLME 113
+ ++ I + G+ G + R + +++ I+ +
Sbjct: 135 DREIVIFRKIHEGVIGSNQQES----------------REIGFRQYMQEHHPACNILELN 178
Query: 114 LNLASFDSIKNFAKNVMKQYPKI-HVLINNAGVSV 147
L+ + +++P + H + N+ V +
Sbjct: 179 LHADLNIEDSRMLDDFFREHPDVKHGITFNSKVYI 213
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 28.4 bits (64), Expect = 3.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 51 YKPMEGKVCIITGANSGIGYETAKELAKLK-ATVV 84
EGK ++T A G G A +L+K V+
Sbjct: 159 GGLSEGKKVLVTAAAGGTGQ-FAMQLSKKAKCHVI 192
>3hdg_A Uncharacterized protein; two-component sensor activity, response
regulator, PSI-II, 11227F, NYSGXRC, structural genomics;
2.27A {Wolinella succinogenes}
Length = 137
Score = 27.5 bits (62), Expect = 4.2
Identities = 5/48 (10%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 93 GQEALEKLKKEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLI 140
G+E D +++ ++ + ++ + K +V++
Sbjct: 40 GEEGERLFGLHAPD--VIITDIRMPKLGGLE-MLDRIKAGGAKPYVIV 84
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 28.0 bits (63), Expect = 4.4
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 61 ITGANSGIGYETAKELAKLKATVVLGCRSMIRGQEALEKLKK 102
I G+ +G K L+ + + R E + +
Sbjct: 5 IVGSTGRVGKSLLKSLSTTDYQI----YAGARKVEQVPQYNN 42
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response
regulator, four helix bundle, histidine phosphotransfer
(HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP:
c.23.1.1 PDB: 1oxk_B 1oxb_B
Length = 133
Score = 27.1 bits (61), Expect = 5.2
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 93 GQEALEKLKKEVQDGQ---IVLM 112
GQEA +K+K+ G+ ++ M
Sbjct: 36 GQEAFDKVKELTSKGENYNMIFM 58
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 27.7 bits (62), Expect = 5.9
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 52 KPMEGKVCIITGANSGIGYETA-----KELAKLKATVVLGCRSMIRGQEALEKLKKEVQD 106
P+ +V + TGA IGY E+ V+L + + +ALE + E++D
Sbjct: 3 APV--RVAV-TGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED 59
Query: 107 GQIVLM 112
L+
Sbjct: 60 CAFPLL 65
>3jte_A Response regulator receiver protein; structural genomics, nysgrc,
response regulator receiver domain, target 11226E,
PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Length = 143
Score = 26.7 bits (60), Expect = 8.4
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 93 GQEALEKLKKEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLI 140
E L + +V+ ++ + + + + K P + V+I
Sbjct: 36 STEGLRIFTENCNSIDVVITDMKMPKLSGMD-ILREIKKITPHMAVII 82
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural
genomics, protein structure initiative; 1.50A
{Legionella pneumophila subsp}
Length = 143
Score = 26.4 bits (59), Expect = 9.2
Identities = 6/28 (21%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 93 GQEALEKLKKEVQDGQ----IVLMELNL 116
G +AL+ L ++ + ++L+++N+
Sbjct: 42 GNQALDMLYGRNKENKIHPKLILLDINI 69
>3c97_A Signal transduction histidine kinase; structural genomics,
signaling, PSI-2, protein structure initiative; 1.70A
{Aspergillus oryzae RIB40}
Length = 140
Score = 26.4 bits (59), Expect = 9.7
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 85 LGCRSMI--RGQEALEKLKKEVQDGQIVLM 112
+ G +AL+ + D +++M
Sbjct: 33 CTNDITVVTNGLQALQAYQNRQFD--VIIM 60
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural
genomics, protein structure initiative; 2.60A
{Clostridium phytofermentans isdg}
Length = 141
Score = 26.3 bits (59), Expect = 9.8
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 93 GQEALEKLKKEVQDGQIVLMELNLASFDSIKNFAKNVMKQYPKIHVLI 140
G A++ K + ++L ++ + D I+ N++K YP V+
Sbjct: 38 GINAIQIALKHPPN--VLLTDVRMPRMDGIE-LVDNILKLYPDCSVIF 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.416
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,928,888
Number of extensions: 366349
Number of successful extensions: 1662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1409
Number of HSP's successfully gapped: 272
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (25.9 bits)