BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2856
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 19 DINECA-HPNACGVNALCQNYPGNYTCSCQPGYTGN--PFEGCIDIDECQYASTHPVCGP 75
DI+EC P+ CG C N PG++ C C GY + C+DIDECQ P+
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQ---RDPLLCR 57
Query: 76 GARCTNFPGGYHCECPPGYHGDAFTTGCV 104
G C N G Y CECPPG+ + C+
Sbjct: 58 GGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYH-GDAFTTGCVDADECVNRPCG-KD 117
DIDEC+ + +CG G +C N PG + C+C GY G C+D DEC P +
Sbjct: 2 DIDECRISPD--LCGRG-QCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRG 58
Query: 118 ALCSNVDGSYTCTCPPGFR 136
+C N +GSY C CPPG +
Sbjct: 59 GVCHNTEGSYRCECPPGHQ 77
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNP 54
+DI+EC +C N G+Y C C PG+ +P
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 19 DINECAH-PNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
D++EC+ N C C N G++ C C GYTG E ID++EC ++P C A
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE--IDVNEC---VSNP-CQNDA 57
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C + G + C C PGY G V+ DEC + PC + C + + C CP GF
Sbjct: 58 TCLDQIGEFQCICMPGYEGVHCE---VNTDECASSPCLHNGRCLDKINEFQCECPTGF 112
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDAL 119
D+DEC + C +C N G + C+C GY G +D +ECV+ PC DA
Sbjct: 4 DVDECSLGAN--PCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNPCQNDAT 58
Query: 120 CSNVDGSYTCTCPPGFR 136
C + G + C C PG+
Sbjct: 59 CLDQIGEFQCICMPGYE 75
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
+D+NEC N C +A C + G + C C PGY G E ++ DEC + C
Sbjct: 43 IDVNECV-SNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDECASSP----CLHNG 95
Query: 78 RCTNFPGGYHCECPPGYHG 96
RC + + CECP G+ G
Sbjct: 96 RCLDKINEFQCECPTGFTG 114
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 44 CSCQPGYTG------NPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYH-- 95
C C PG++ P E C DI+EC S CG + C N G Y C C PGY
Sbjct: 21 CRCNPGFSSFSEIITTPMETCDDINECATLS-KVSCGKFSDCWNTEGSYDCVCSPGYEPV 79
Query: 96 ------GDAFTTGCVDADECVN--RPCGKDALCSNVDGSYTCTCPPGFR 136
+ C D DEC + C +C N GSY+C C PG++
Sbjct: 80 SGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWK 128
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 19 DINECAHPN--ACGVNALCQNYPGNYTCSCQPGYTGNPFEG-----------CIDIDECQ 65
DINECA + +CG + C N G+Y C C PGY P G C D+DEC
Sbjct: 43 DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY--EPVSGAKTFKNESENTCQDVDEC- 99
Query: 66 YASTHPVCGPGARCTNFPGGYHCECPPGYH 95
+S C C N G Y C C PG+
Sbjct: 100 -SSGQHQCDSSTVCFNTVGSYSCRCRPGWK 128
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 19 DINECAH-PNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
D++EC+ N C C N G++ C C GYTG E ID++EC ++P C A
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE--IDVNEC---VSNP-CQNDA 55
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C + G + C C PGY G V+ DEC + PC + C + + C CP GF
Sbjct: 56 TCLDQIGEFQCICMPGYEGVHCE---VNTDECASSPCLHNGRCLDKINEFQCECPTGF 110
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDAL 119
D+DEC + C +C N G + C+C GY G +D +ECV+ PC DA
Sbjct: 2 DVDECSLGAN--PCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNPCQNDAT 56
Query: 120 CSNVDGSYTCTCPPGFR 136
C + G + C C PG+
Sbjct: 57 CLDQIGEFQCICMPGYE 73
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
+D+NEC N C +A C + G + C C PGY G E ++ DEC + C
Sbjct: 41 IDVNECV-SNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDECASSP----CLHNG 93
Query: 78 RCTNFPGGYHCECPPGYHG 96
RC + + CECP G+ G
Sbjct: 94 RCLDKINEFQCECPTGFTG 112
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDAL 119
D+DEC + +CG A C N PG + CECP GY + + C D DEC C + L
Sbjct: 2 DVDECSLKPS--ICGT-AVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQ--L 56
Query: 120 CSNVDGSYTCTC--PPGFR 136
C N G YTC C GF+
Sbjct: 57 CVNYPGGYTCYCDGKKGFK 75
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 19 DINECA-HPNACGVNALCQNYPGNYTCSCQPGYTGN-PFEGCIDIDECQYASTHPVCGPG 76
D++EC+ P+ CG A+C+N PG++ C C GY N + C DIDEC + +C
Sbjct: 2 DVDECSLKPSICGT-AVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC----SENMC--A 54
Query: 77 ARCTNFPGGYHCEC 90
C N+PGGY C C
Sbjct: 55 QLCVNYPGGYTCYC 68
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 59 IDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADEC-VNRPCGKD 117
+D+DEC+ VC G +C N G Y CECP GY CVD DEC V PCG +
Sbjct: 3 VDMDECKEPD---VCKHG-QCINTDGSYRCECPFGYI--LAGNECVDTDECSVGNPCG-N 55
Query: 118 ALCSNVDGSYTCTCPPGFR 136
C NV G + CTC GF
Sbjct: 56 GTCKNVIGGFECTCEEGFE 74
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
VD++EC P+ C + C N G+Y C C GY E C+D DEC + CG G
Sbjct: 3 VDMDECKEPDVC-KHGQCINTDGSYRCECPFGYILAGNE-CVDTDECSVGNP---CGNGT 57
Query: 78 RCTNFPGGYHCECPPGYH 95
C N GG+ C C G+
Sbjct: 58 -CKNVIGGFECTCEEGFE 74
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGC 58
VD +EC+ N CG N C+N G + C+C+ G+ P C
Sbjct: 42 VDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTC 81
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 295 NECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT-----CSQLCV 348
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 349 NLEGGYKCQCEEGFQLDPHTKAC 371
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 308 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 363
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 3 NECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT-----CSQLCV 56
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 57 NLEGGYKCQCEEGFQLDPHTKAC 79
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 16 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 71
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 313 NECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT-----CSQLCV 366
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 367 NLEGGYKCQCEEGFQLDPHTKAC 389
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 326 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 381
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C C
Sbjct: 41 NECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CS--QLCV 94
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 95 NLEGGYKCQCEEGFQLDPHTKAC 117
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 54 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 109
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 3 NECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT-----CSQLCV 56
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 57 NLEGGYKCQCEEGFQLDPHTKAC 79
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 16 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 71
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C C
Sbjct: 1 NECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CS--QLCV 54
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 55 NLEGGYKCQCEEGFQLDPHTKAC 77
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 14 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 69
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 6 NECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT-----CSQLCV 59
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 60 NLEGGYKCQCEEGFQLDPHTKAC 82
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 19 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 74
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 14 FVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVC 73
F + NEC N G + +C + Y C C G+ C DIDECQ T
Sbjct: 23 FQGAMGTNECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---- 77
Query: 74 GPGARCTNFPGGYHCECPPGYHGDAFTTGC 103
C N GGY C+C G+ D T C
Sbjct: 78 -CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 43 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+ + G + +EC++ G +C+++ Y C CP GF+
Sbjct: 20 NLYFQGAMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ 59
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 6 NECLDNNG-GCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT-----CSQLCV 59
Query: 81 NFPGGYHCECPPGYHGDAFTTGC 103
N GGY C+C G+ D T C
Sbjct: 60 NLEGGYKCQCEEGFQLDPHTKAC 82
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 19 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 74
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 14 FVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVC 73
F + NEC N G + +C + Y C C G+ C DIDECQ T
Sbjct: 23 FQGAMGTNECLDNNG-GCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---- 77
Query: 74 GPGARCTNFPGGYHCECPPGYHGDAFTTGC 103
C N GGY C+C G+ D T C
Sbjct: 78 -CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C CP G+ A C D DEC + P LC N++G Y C C GF+
Sbjct: 43 CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+ + G + +EC++ G +C+++ Y C CP GF+
Sbjct: 20 NLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQ 59
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 56/153 (36%), Gaps = 36/153 (23%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFE-GCIDIDECQ-YASTHPVCGP 75
D+NEC P C ++ C N PG+Y C C P + NP GC+D Y P
Sbjct: 1 TDVNECLDPTTC-ISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 76 G-ARCTNFPG----------------GYHCECPP---------------GYHGDAFTTGC 103
G C+N G G CE P G+ + T
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVIL 119
Query: 104 VDADECVNRP-CGKDALCSNVDGSYTCTCPPGF 135
D DEC P + C N GS+ C CP G+
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 49 GYTGNPFEGCI-DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGC 103
G+ NP + DIDECQ P G +C N G + C CP GY+ + T C
Sbjct: 109 GFRPNPITVILEDIDECQEL---PGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 57/153 (37%), Gaps = 36/153 (23%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFE-GCIDIDECQ-YASTHPVCGP 75
D+NEC P C ++ C N PG+Y C C P + NP GC+D Y P
Sbjct: 1 TDVNECLDPTTC-ISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 76 G-ARCTNFPG----------------GYHCE-CP--------------PGYHGDAFTTGC 103
G C+N G G CE CP G+ + T
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPITVIL 119
Query: 104 VDADECVNRP-CGKDALCSNVDGSYTCTCPPGF 135
D DEC P + C N GS+ C CP G+
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 49 GYTGNPFEGCI-DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGC 103
G+ NP + DIDECQ P G +C N G + C CP GY+ + T C
Sbjct: 109 GFRPNPITVILEDIDECQEL---PGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 29 CGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPG--GY 86
C N CQ+ YTC+C PGY G+ E + +EC HP G + PG Y
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNEC-----HPERTDGCQHFCLPGQESY 65
Query: 87 HCECPPGYHGDAFTTGCVDADEC 109
C C GY CV D+C
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQC 88
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 109 CVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C+++PC + C + YTCTC PG+
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYE 35
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGC-VDADECV-NRPCGKDALCSNVDGSYTCTCPPGFR 136
C + GY C C PGY G + C + +EC R G C SYTC+C G+R
Sbjct: 19 CQDSIWGYTCTCSPGYEG----SNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYR 74
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D +EC++ PC DA C + G + C C PG+
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYE 32
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTG 52
D+NEC N C +A C + G + C C PGY G
Sbjct: 1 DVNECIS-NPCQNDATCLDQIGEFQCICMPGYEG 33
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEG-CIDIDE--CQYASTHPVC- 73
DI+EC +N +C+N PG++ C C T +P + CI+ + C C
Sbjct: 2 ADIDECESSPC--INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 74 ----GPGAR---CTNFPGGY-----HCE----CPPGYHGDAFTTGCVDADECVNRP-CGK 116
G + C++ + C+ C GY T C D DEC P K
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYS-RIKGTQCEDIDECEVFPGVCK 118
Query: 117 DALCSNVDGSYTCTCPPGF 135
+ LC N GS+ C CP G
Sbjct: 119 NGLCVNTRGSFKCQCPSGM 137
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 33 ALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPP 92
LCQ P C GY+ C DIDEC+ P C N G + C+CP
Sbjct: 84 TLCQVDP-----ICGKGYSRIKGTQCEDIDECEV---FPGVCKNGLCVNTRGSFKCQCPS 135
Query: 93 GYHGDA 98
G DA
Sbjct: 136 GMTLDA 141
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 19 DINEC-AHPNACGVNALCQNYPGNYTCSCQPGYT 51
DI+EC P C N LC N G++ C C G T
Sbjct: 106 DIDECEVFPGVCK-NGLCVNTRGSFKCQCPSGMT 138
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 18 VDINECAHPNACGV-------NALCQNYPGNYTCSCQPGYT 51
VD++ECA + G LC NY G Y CSC+PGY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 59 IDIDECQYASTHPVCGPGARCT----NFPGGYHCECPPGY 94
+D+DEC S P +C N+ GGY C C PGY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGY 41
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 104 VDADECVNRPCGKDA--------LCSNVDGSYTCTCPPGFR 136
VD DEC +R + LC N G Y C+C PG+
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 73 CGPGARCTNFP-GGYHCE-CPPGYHGDAFTTGCVDADECVNRP-----CGKDALCSNVDG 125
C PGA+C++FP G + C CP G+ G+ T C D DEC P K C N
Sbjct: 8 CFPGAQCSSFPDGSWSCGFCPVGFLGNG--THCEDLDECALVPDICFSTSKVPRCVNTQP 65
Query: 126 SYTCT-CPPGFR 136
+ C CPP +R
Sbjct: 66 GFHCLPCPPRYR 77
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 27 NACGVNALCQNYP-GNYTCS-CQPGYTGNPFEGCIDIDECQYA-----STHPVCGPGARC 79
N C A C ++P G+++C C G+ GN C D+DEC ST V RC
Sbjct: 6 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKV----PRC 60
Query: 80 TNFPGGYHC-ECPPGYHG 96
N G+HC CPP Y G
Sbjct: 61 VNTQPGFHCLPCPPRYRG 78
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 73 CGPGARCTNFP-GGYHCE-CPPGYHGDAFTTGCVDADECVNRP-----CGKDALCSNVDG 125
C PGA+C++FP G + C CP G+ G+ T C D DEC P K C N
Sbjct: 11 CFPGAQCSSFPDGSWSCGFCPVGFLGNG--THCEDLDECALVPDICFSTSKVPRCVNTQP 68
Query: 126 SYTCT-CPPGFR 136
+ C CPP +R
Sbjct: 69 GFHCLPCPPRYR 80
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 27 NACGVNALCQNYP-GNYTCS-CQPGYTGNPFEGCIDIDECQYA-----STHPVCGPGARC 79
N C A C ++P G+++C C G+ GN C D+DEC ST V RC
Sbjct: 9 NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKV----PRC 63
Query: 80 TNFPGGYHC-ECPPGYHG 96
N G+HC CPP Y G
Sbjct: 64 VNTQPGFHCLPCPPRYRG 81
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D F + D D+C PC C G YTCTC GF
Sbjct: 38 DXFWSKYKDGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFE 77
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 85 GYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
GY C+CP G++G + +EC PC +C+++ +Y+C CP F
Sbjct: 79 GYVCKCPRGFNGIHCQH---NINECEVEPCKNGGICTDLVANYSCECPGEF 126
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+ F D D+C PC C + G YTCTC GF
Sbjct: 33 NEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+ F D D+C PC C + G YTCTC GF
Sbjct: 33 NEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C + G YTCTC GF
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 77
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C + G YTCTC GF
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFE 33
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C + G YTCTC GF
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 34
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C + G YTCTC GF
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 34
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C + G YTCTC GF
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 33
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C + G YTCTC GF
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 32
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 35 CQNYPGNYTCSCQPGY-TGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPG 93
CQ G C+C GY C D++EC + C G CTN G + C C G
Sbjct: 17 CQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC---AEEGYCSQG--CTNSEGAFQCWCEAG 71
Query: 94 Y 94
Y
Sbjct: 72 Y 72
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRP-CGKDALCSNVDGSYTCTCPPGF 135
+C G C C GY C D +EC C + C+N +G++ C C G+
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSEGAFQCWCEAGY 72
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNP 54
D+NECA C C N G + C C+ GY P
Sbjct: 43 DVNECAEEGYCSQG--CTNSEGAFQCWCEAGYELRP 76
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 83 PGGYHCE-CPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
PG ++ E C H +T C D C K C G+YTC+C PGF
Sbjct: 101 PGKWNDEHCLKKKHALCYTASCQDM------SCSKQGECLETIGNYTCSCYPGF 148
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 28 ACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDE 63
+C C GNYTCSC PG+ G E D D+
Sbjct: 126 SCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C + G YTCTC GF
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 32
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C G YTCTC GF
Sbjct: 2 DGDQCEGHPCLNQGHCKXGIGDYTCTCAEGFE 33
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C PC C G YTCTC GF
Sbjct: 2 DGDQCETSPCQNQGKCKXGLGEYTCTCLEGFE 33
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 13/107 (12%)
Query: 24 AHPNACGVNALCQN-----YPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
A +A V+ +C+N ++ C C G C + +EC+ + CG +
Sbjct: 2 AEASAVTVDTICKNGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQ 61
Query: 79 CTNFP-----GGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALC 120
C P Y C C GY T CV D C + CG+ C
Sbjct: 62 CIENPDPAQVNMYKCGCIEGYTLKEDT--CV-LDVCQYKNCGESGEC 105
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 104 VDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
VD D+C + PC C + SY C CP GF
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFE 33
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+ F VD D+C PC LC + SY C C GF
Sbjct: 39 NEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE 78
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 14 FVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGN 53
+ +VD ++C PN C LC++ +Y C CQ G+ G
Sbjct: 42 WKQYVDGDQC-EPNPCLNGGLCKDDINSYECWCQVGFEGK 80
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 45 SCQPGYTG-NPFEGCIDIDECQYA-STHPVCGPGARCTNFPGGYHCECPPGY 94
S + +TG F DIDECQ A P C C N GG++C C GY
Sbjct: 107 SNEKPFTGFEAFYAAEDIDECQVAPGEAPTCD--HHCHNHLGGFYCSCRAGY 156
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 11 ISQFVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGY 50
+ + V DINEC + C N+ G Y CSC P Y
Sbjct: 108 FAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEY 147
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 79 CTNFPGGYHCECPPGY 94
C NF GGY C CPP Y
Sbjct: 132 CNNFIGGYFCSCPPEY 147
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 109 CVNRPCGKDALCSNVDGSYTCTCPPGF 135
C + C K C G+YTC+C PGF
Sbjct: 4 CQDMSCSKQGECLETIGNYTCSCYPGF 30
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 28 ACGVNALCQNYPGNYTCSCQPGYTG 52
+C C GNYTCSC PG+ G
Sbjct: 8 SCSKQGECLETIGNYTCSCYPGFYG 32
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
+ F VD D+C PC LC SY C C GF
Sbjct: 39 NXFWKQYVDGDQCEPNPCLNGGLCKXDINSYECWCQVGF 77
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 14 FVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGN 53
+ +VD ++C PN C LC+ +Y C CQ G+ G
Sbjct: 42 WKQYVDGDQC-EPNPCLNGGLCKXDINSYECWCQVGFEGK 80
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 89 ECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCP 132
+CP F CV++ E N G CSN G +TC P
Sbjct: 110 DCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCG-HTCQVP 152
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 99 FTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
F D D+C + PC C + SY C C P F
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 77
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 132 PPGF 135
G+
Sbjct: 115 HEGY 118
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 99 FTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
F D D+C + PC C + SY C C P F
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 77
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 132 PPGF 135
G+
Sbjct: 115 HEGY 118
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 99 FTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
F D D+C + PC C + SY C C P F
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAF 76
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 132 PPGF 135
G+
Sbjct: 115 HEGY 118
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 99 FTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
F D D+C + PC C + SY C C P F
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAF 76
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 132 PPGF 135
G+
Sbjct: 115 HEGY 118
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 18 VDINECAHPNACGV--NALCQNYPGNYTCSCQPGY 50
VD++EC + + C NY G Y CSC+ GY
Sbjct: 119 VDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGY 153
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 58 CIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGY 94
+D+DEC+ + C N+ GGY+C C GY
Sbjct: 118 AVDVDECKEREDEELSC-DHYCHNYIGGYYCSCRFGY 153
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C + PC C + SY C C P F
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 33
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C + PC C + SY C C P F
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 36
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 14 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 73
Query: 132 PPGF 135
G+
Sbjct: 74 HEGY 77
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 18 VDINECAHPNACGV--NALCQNYPGNYTCSCQPGY 50
VD++EC + + C NY G Y CSC+ GY
Sbjct: 119 VDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGY 153
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 58 CIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGY 94
+D+DEC+ + C N+ GGY+C C GY
Sbjct: 118 AVDVDECKEREDEELSC-DHYCHNYIGGYYCSCRFGY 153
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 105 DADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
D D+C + PC C + SY C C P F
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 33
>pdb|3QN3|A Chain A, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|B Chain B, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|C Chain C, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|D Chain D, Phosphopyruvate Hydratase From Campylobacter Jejuni
Length = 417
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 34 LCQNYPGNYTCSCQPGYTGNPFEGCIDIDE 63
LC YP CS + G N FEG I + E
Sbjct: 273 LCAKYP---ICSIEDGLAENDFEGWIKLTE 299
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 41 NYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGY-HGDAF 99
+Y C C G+ P E C + C P + + CECP GY D F
Sbjct: 23 SYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQAS-------CECPEGYILDDGF 75
Query: 100 TTGCVDADECVNRPCGKDALCSNVDGSYTCTCPP 133
C D DEC N +C N+ G++ C C P
Sbjct: 76 I--CTDIDECENGG-FCSGVCHNLPGTFECICGP 106
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 88 CECPPGY-HGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPP 133
CECP GY D F C D DEC N +C N+ G++ C C P
Sbjct: 63 CECPEGYILDDGFI--CTDIDECENGG-FCSGVCHNLPGTFECICGP 106
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 66 YASTHPVCGPGARCTNF-PGGYHCECPPGYHG 96
Y TH C G C+N P Y C CP GY G
Sbjct: 133 YCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSG 164
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, 20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, Minimized Average Structure
Length = 63
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 39 PGNYTCSCQPGYTG 52
P Y C CQPG+TG
Sbjct: 29 PSRYLCKCQPGFTG 42
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 106 ADECVNRPCGKDALCSNVDGSYTCTC 131
A C++ PC + +C + Y C C
Sbjct: 394 AKPCLSNPCKNNGMCRDGWNRYVCDC 419
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 39 PGNYTCSCQPGYTG 52
P Y C CQPG+TG
Sbjct: 31 PSRYLCKCQPGFTG 44
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 26.2 bits (56), Expect = 6.6, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 106 ADECVNRPCGKDALCSNVDGSYTCTC 131
A C++ PC + +C + Y C C
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNRYVCDC 644
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 8 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 67
Query: 132 PPGF 135
G+
Sbjct: 68 HEGY 71
>pdb|4AHI|A Chain A, K40i - Angiogenin Mutants And Amyotrophic Lateral
Sclerosis - A Biochemical And Biological Analysis
Length = 123
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 18 VDINECAHPNACGVNALCQNYPGN 41
+DIN H N + A+C+N GN
Sbjct: 40 IDINTFIHGNKRSIKAICENKNGN 63
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 7 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 66
Query: 132 PPGF 135
G+
Sbjct: 67 HEGY 70
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGS-YTCTC 131
C G C + Y C C P + G T D CVN G + CS+ G+ +C C
Sbjct: 7 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 66
Query: 132 PPGF 135
G+
Sbjct: 67 HEGY 70
>pdb|2Z84|A Chain A, Insights From Crystal And Solution Structures Of Mouse
Ufsp1
Length = 218
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 57 GCIDIDE----CQYASTHPVCG-PGARCTNFPG--------GYHCECPPGYHGDAFTTGC 103
GC +D+ C Y + +C PG + + PG + PPG+ G GC
Sbjct: 37 GCDGLDDRGWGCGYRTLQTLCSWPGGQSSGVPGLPALQGALEAMGDKPPGFRGSRNWIGC 96
Query: 104 VDADECVN 111
V+A C+
Sbjct: 97 VEASLCLE 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.520
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,387,509
Number of Sequences: 62578
Number of extensions: 247717
Number of successful extensions: 744
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 302
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)