Query psy2856
Match_columns 136
No_of_seqs 136 out of 1085
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 18:37:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1219|consensus 99.6 4.3E-15 9.2E-20 110.3 8.2 107 21-136 3865-3972(4289)
2 KOG1214|consensus 99.5 4.1E-13 8.8E-18 92.8 9.4 120 13-136 727-857 (1289)
3 KOG4289|consensus 99.2 5.5E-11 1.2E-15 86.6 6.1 109 18-134 1177-1308(2531)
4 KOG4289|consensus 98.7 1.3E-07 2.8E-12 69.9 9.0 86 3-93 1222-1308(2531)
5 PF07645 EGF_CA: Calcium-bindi 98.7 1.7E-08 3.7E-13 45.6 2.7 34 19-52 1-35 (42)
6 PF07645 EGF_CA: Calcium-bindi 98.7 2.1E-08 4.6E-13 45.3 2.3 32 105-136 1-34 (42)
7 KOG1214|consensus 98.6 5.6E-07 1.2E-11 63.6 8.4 107 27-136 700-818 (1289)
8 KOG1219|consensus 98.6 2.1E-07 4.5E-12 71.5 6.6 86 8-99 3891-3976(4289)
9 KOG1217|consensus 98.4 1.1E-05 2.4E-10 54.8 10.4 113 21-136 170-302 (487)
10 KOG1217|consensus 98.3 9.3E-06 2E-10 55.2 9.7 116 16-135 267-386 (487)
11 KOG4260|consensus 98.3 3.9E-07 8.5E-12 56.4 2.3 75 13-96 229-305 (350)
12 KOG4260|consensus 98.2 1.8E-06 3.8E-11 53.6 3.4 106 28-136 151-268 (350)
13 smart00179 EGF_CA Calcium-bind 98.2 5.5E-06 1.2E-10 36.5 4.2 33 19-51 1-33 (39)
14 smart00179 EGF_CA Calcium-bind 98.0 1.6E-05 3.4E-10 35.0 3.6 31 106-136 2-33 (39)
15 PF12662 cEGF: Complement Clr- 98.0 9.5E-06 2.1E-10 31.7 2.2 24 85-108 1-24 (24)
16 PF00008 EGF: EGF-like domain 97.9 8.3E-06 1.8E-10 34.4 1.7 27 27-53 4-31 (32)
17 cd00054 EGF_CA Calcium-binding 97.8 5.9E-05 1.3E-09 32.7 4.1 34 20-53 2-35 (38)
18 PF06247 Plasmod_Pvs28: Plasmo 97.8 1.1E-05 2.3E-10 47.6 1.0 100 32-135 10-118 (197)
19 PF14670 FXa_inhibition: Coagu 97.7 1.7E-05 3.6E-10 34.3 1.3 24 113-136 5-28 (36)
20 PF00008 EGF: EGF-like domain 97.7 2.7E-05 5.9E-10 32.8 1.5 28 109-136 1-29 (32)
21 PF12662 cEGF: Complement Clr- 97.7 7.8E-05 1.7E-09 29.1 2.5 23 41-63 1-24 (24)
22 PF12947 EGF_3: EGF domain; I 97.6 5.3E-05 1.2E-09 32.8 1.8 28 27-54 6-33 (36)
23 cd00054 EGF_CA Calcium-binding 97.5 0.00025 5.4E-09 30.7 3.5 31 106-136 2-33 (38)
24 cd00053 EGF Epidermal growth f 97.3 0.0009 1.9E-08 28.4 3.8 27 27-53 6-32 (36)
25 cd00053 EGF Epidermal growth f 97.2 0.0011 2.3E-08 28.1 3.6 25 112-136 6-30 (36)
26 smart00181 EGF Epidermal growt 97.1 0.0013 2.9E-08 27.9 3.5 23 113-136 7-29 (35)
27 PF12947 EGF_3: EGF domain; I 97.1 0.00036 7.7E-09 30.2 1.4 24 113-136 7-30 (36)
28 smart00181 EGF Epidermal growt 97.0 0.0023 4.9E-08 27.2 3.6 26 27-53 6-31 (35)
29 PF14670 FXa_inhibition: Coagu 96.6 0.0052 1.1E-07 26.5 3.1 25 76-100 9-33 (36)
30 cd01475 vWA_Matrilin VWA_Matri 96.5 0.0033 7.1E-08 39.0 3.3 40 13-54 180-220 (224)
31 cd01475 vWA_Matrilin VWA_Matri 96.5 0.0031 6.7E-08 39.1 3.0 35 102-136 183-217 (224)
32 PF06247 Plasmod_Pvs28: Plasmo 96.3 0.0044 9.6E-08 36.9 2.5 114 13-135 32-159 (197)
33 KOG1225|consensus 95.8 0.055 1.2E-06 37.8 6.3 70 43-135 266-335 (525)
34 KOG1225|consensus 95.0 0.15 3.3E-06 35.8 6.4 45 43-100 297-341 (525)
35 PF12661 hEGF: Human growth fa 94.3 0.026 5.6E-07 18.5 0.8 12 43-54 1-12 (13)
36 PF12946 EGF_MSP1_1: MSP1 EGF 93.2 0.057 1.2E-06 23.3 1.1 28 27-54 5-33 (37)
37 PF00954 S_locus_glycop: S-loc 92.4 0.25 5.5E-06 27.0 3.3 33 20-53 77-109 (110)
38 PF07974 EGF_2: EGF-like domai 91.0 0.54 1.2E-05 19.6 2.8 25 28-54 7-31 (32)
39 KOG1226|consensus 83.6 7.8 0.00017 28.9 6.4 22 33-55 467-491 (783)
40 KOG3516|consensus 80.3 1.9 4.2E-05 33.5 2.7 40 15-55 540-580 (1306)
41 PHA02887 EGF-like protein; Pro 69.2 8 0.00017 21.6 2.7 27 28-55 93-121 (126)
42 smart00051 DSL delta serrate l 62.1 18 0.00039 17.7 3.4 43 86-136 17-59 (63)
43 PHA03099 epidermal growth fact 60.8 14 0.00031 21.0 2.7 28 28-56 52-81 (139)
44 PF09064 Tme5_EGF_like: Thromb 55.3 6.2 0.00013 16.7 0.6 10 127-136 18-27 (34)
45 KOG3514|consensus 49.0 17 0.00037 28.7 2.3 33 22-55 625-658 (1591)
46 KOG1226|consensus 46.1 63 0.0014 24.6 4.6 25 43-67 567-591 (783)
47 cd00055 EGF_Lam Laminin-type e 43.9 29 0.00063 15.8 2.0 17 42-58 19-35 (50)
48 KOG4291|consensus 43.0 1.6E+02 0.0034 23.8 6.4 27 39-65 445-471 (1043)
49 KOG1836|consensus 41.6 58 0.0013 27.5 4.2 44 89-135 760-806 (1705)
50 smart00180 EGF_Lam Laminin-typ 39.7 39 0.00085 15.1 2.0 14 43-56 19-32 (46)
51 KOG0994|consensus 36.1 1.5E+02 0.0033 24.4 5.4 22 78-99 877-899 (1758)
52 PF00053 Laminin_EGF: Laminin 33.1 21 0.00045 16.1 0.6 24 33-58 11-34 (49)
53 KOG3516|consensus 33.0 47 0.001 26.7 2.5 33 103-135 542-575 (1306)
54 PF01683 EB: EB module; Inter 32.8 57 0.0012 14.9 3.2 21 29-53 28-48 (52)
55 PF01826 TIL: Trypsin Inhibito 31.6 37 0.0008 15.7 1.3 20 87-107 34-53 (55)
No 1
>KOG1219|consensus
Probab=99.60 E-value=4.3e-15 Score=110.26 Aligned_cols=107 Identities=36% Similarity=0.957 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCeeeeCC-CCeEeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCeeeecCCCeeeeCCCCceeCCC
Q psy2856 21 NECAHPNACGVNALCQNYP-GNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAF 99 (136)
Q Consensus 21 ~~c~~~~~~~~~~~C~~~~-g~~~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c~~~~~~~~c~c~~g~~~~~~ 99 (136)
++|.+ ++|++++.|...+ |+|.|.|++.|.|..++ .+...|...+ |..+..|+...+.+.|.|+.||.|.-+
T Consensus 3865 d~C~~-npCqhgG~C~~~~~ggy~CkCpsqysG~~CE--i~~epC~snP----C~~GgtCip~~n~f~CnC~~gyTG~~C 3937 (4289)
T KOG1219|consen 3865 DPCND-NPCQHGGTCISQPKGGYKCKCPSQYSGNHCE--IDLEPCASNP----CLTGGTCIPFYNGFLCNCPNGYTGKRC 3937 (4289)
T ss_pred ccccc-CcccCCCEecCCCCCceEEeCcccccCcccc--cccccccCCC----CCCCCEEEecCCCeeEeCCCCccCcee
Confidence 77875 8999999999887 78999999999998776 5778888766 999999999999999999999998766
Q ss_pred CcceeeCCCCCCCCCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 100 TTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 100 ~~~~~~~~~c~~~~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
.. ..++||+.+.|..++.|+|..|+|.|.|-+||+
T Consensus 3938 e~--~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~ 3972 (4289)
T KOG1219|consen 3938 EA--RGISECSKNVCGTGGQCINIPGSFHCNCTPGIL 3972 (4289)
T ss_pred ec--ccccccccccccCCceeeccCCceEeccChhHh
Confidence 43 138899999999999999999999999998863
No 2
>KOG1214|consensus
Probab=99.48 E-value=4.1e-13 Score=92.85 Aligned_cols=120 Identities=37% Similarity=0.850 Sum_probs=92.3
Q ss_pred ceeeeeeCCCCCC-CCCCCCCCeeeeCCCCeEeeCCCCCccCCC-CCccc------CCcccCCCCCCCCCCCCee--eec
Q psy2856 13 QFVVFVDINECAH-PNACGVNALCQNYPGNYTCSCQPGYTGNPF-EGCID------IDECQYASTHPVCGPGARC--TNF 82 (136)
Q Consensus 13 ~~~~c~~~~~c~~-~~~~~~~~~C~~~~g~~~C~c~~g~~~~~~-~~c~~------~~~c~~~~~~~~c~~~~~c--~~~ 82 (136)
...+|.|.++|+. ...|++.++|+|.++.|.|.|..||..... .+|.. .+.|....+ .|....++ +..
T Consensus 727 dgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h--~C~i~g~a~c~~h 804 (1289)
T KOG1214|consen 727 DGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSH--TCAIAGQARCVHH 804 (1289)
T ss_pred CCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCcc--ccCcCCceEEEec
Confidence 5688999999985 346999999999999999999998865443 33443 344554321 24444444 443
Q ss_pred C-CCeeeeCCCCceeCCCCcceeeCCCCCCCCCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 83 P-GGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 83 ~-~~~~c~c~~g~~~~~~~~~~~~~~~c~~~~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
. +.|.|.|.+||.+... .|.++|||.+..|+..+.|.++++++.|+|.+||.
T Consensus 805 Ggs~y~C~CLPGfsGDG~--~c~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~ 857 (1289)
T KOG1214|consen 805 GGSTYSCACLPGFSGDGH--QCTDVDECSPSRCHPAATCYNTPGSFSCRCQPGYY 857 (1289)
T ss_pred CCceEEEeecCCccCCcc--ccccccccCccccCCCceEecCCCcceeecccCcc
Confidence 3 5789999999998764 47899999999999999999999999999999984
No 3
>KOG4289|consensus
Probab=99.18 E-value=5.5e-11 Score=86.58 Aligned_cols=109 Identities=36% Similarity=0.879 Sum_probs=85.2
Q ss_pred eeCCCCCCCCCCCCCCeee----------------------eCCCCeEeeCCCCCccCCCCCcccCCcccCCCCCCCCCC
Q psy2856 18 VDINECAHPNACGVNALCQ----------------------NYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGP 75 (136)
Q Consensus 18 ~~~~~c~~~~~~~~~~~C~----------------------~~~g~~~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~ 75 (136)
.|-+.|.. .||.++..|. +..+.+.|.|++||++..++ .+++.|-..+ |++
T Consensus 1177 fdDniClr-EPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~Ce--TeiDlCYs~p----C~n 1249 (2531)
T KOG4289|consen 1177 FDDNICLR-EPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCE--TEIDLCYSGP----CGN 1249 (2531)
T ss_pred ccCchhhc-chhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCccccc--chhHhhhcCC----CCC
Confidence 34456664 5676666663 34567899999999999876 5778888766 999
Q ss_pred CCeeeecCCCeeeeCCCCceeCCCCcceeeCCCCCCCCCCCCCeeeec-CCCeeEeCCCC
Q psy2856 76 GARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNV-DGSYTCTCPPG 134 (136)
Q Consensus 76 ~~~c~~~~~~~~c~c~~g~~~~~~~~~~~~~~~c~~~~~~~~~~c~~~-~g~~~c~C~~g 134 (136)
+..|....+.|.|.|.+||.|..+.- ......|.+..|.+++.|++. .|++.|.|+.|
T Consensus 1250 ng~C~srEggYtCeCrpg~tGehCEv-s~~agrCvpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1250 NGRCRSREGGYTCECRPGFTGEHCEV-SARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCceEEecCceeEEecCCccccceee-ecccCccccceecCCCEEeecCCCceeccCCCc
Confidence 99999999999999999999987642 123346888899999999976 57889999976
No 4
>KOG4289|consensus
Probab=98.73 E-value=1.3e-07 Score=69.93 Aligned_cols=86 Identities=34% Similarity=0.772 Sum_probs=58.1
Q ss_pred eeEEEeeeecceeeeeeCCCCCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCeeeec
Q psy2856 3 FRYSLIINISQFVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNF 82 (136)
Q Consensus 3 ~~~~~~~~~~~~~~c~~~~~c~~~~~~~~~~~C~~~~g~~~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c~~~ 82 (136)
+++++...+++-.--.++|+|-. ++|++++.|...+|.|.|.|.+||.|..++.-.....|... .|.++..|.+.
T Consensus 1222 lrCrCPpGFTgd~CeTeiDlCYs-~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpG----vC~nggtC~~~ 1296 (2531)
T KOG4289|consen 1222 LRCRCPPGFTGDYCETEIDLCYS-GPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPG----VCKNGGTCVNL 1296 (2531)
T ss_pred eeEeCCCCCCcccccchhHhhhc-CCCCCCCceEEecCceeEEecCCccccceeeecccCccccc----eecCCCEEeec
Confidence 35556566664422236888875 89999999999999999999999999765321222334332 26777777665
Q ss_pred C-CCeeeeCCCC
Q psy2856 83 P-GGYHCECPPG 93 (136)
Q Consensus 83 ~-~~~~c~c~~g 93 (136)
. +.+.|.|+.|
T Consensus 1297 ~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1297 LNGGFCCHCPYG 1308 (2531)
T ss_pred CCCceeccCCCc
Confidence 4 4566677655
No 5
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.70 E-value=1.7e-08 Score=45.58 Aligned_cols=34 Identities=50% Similarity=1.075 Sum_probs=30.0
Q ss_pred eCCCCCCC-CCCCCCCeeeeCCCCeEeeCCCCCcc
Q psy2856 19 DINECAHP-NACGVNALCQNYPGNYTCSCQPGYTG 52 (136)
Q Consensus 19 ~~~~c~~~-~~~~~~~~C~~~~g~~~C~c~~g~~~ 52 (136)
|||||... +.|...+.|+|+.|+|.|.|++||..
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence 78999863 47888899999999999999999984
No 6
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.66 E-value=2.1e-08 Score=45.27 Aligned_cols=32 Identities=47% Similarity=1.271 Sum_probs=27.8
Q ss_pred eCCCCCCC--CCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 105 DADECVNR--PCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 105 ~~~~c~~~--~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
||+||... .|...+.|+|+.|+|.|.|++||+
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 57889875 577789999999999999999984
No 7
>KOG1214|consensus
Probab=98.58 E-value=5.6e-07 Score=63.56 Aligned_cols=107 Identities=37% Similarity=0.934 Sum_probs=77.4
Q ss_pred CCCCCCCeeeeCCC-CeEeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCeeeecCCCeeeeCCCCceeCCCCcceee
Q psy2856 27 NACGVNALCQNYPG-NYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVD 105 (136)
Q Consensus 27 ~~~~~~~~C~~~~g-~~~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c~~~~~~~~c~c~~g~~~~~~~~~~~~ 105 (136)
..|...+.|....+ .|.|.|..||.+.+ +.|.+.++|.... ..|+....|++.+++++|.|..+|........|..
T Consensus 700 h~cdt~a~C~pg~~~~~tcecs~g~~gdg-r~c~d~~eca~~~--~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~ 776 (1289)
T KOG1214|consen 700 HMCDTTARCHPGTGVDYTCECSSGYQGDG-RNCVDENECATGF--HRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVL 776 (1289)
T ss_pred cccCCCccccCCCCcceEEEEeeccCCCC-CCCCChhhhccCC--CCCCCCceeecCCCceeEEEeecceeccCCcceEE
Confidence 34666777877653 78999999998877 4578888887654 24899999999999999999999987766555654
Q ss_pred CC------CCCCC--CCCCC--Ceeeec-CCCeeEeCCCCCC
Q psy2856 106 AD------ECVNR--PCGKD--ALCSNV-DGSYTCTCPPGFR 136 (136)
Q Consensus 106 ~~------~c~~~--~~~~~--~~c~~~-~g~~~c~C~~g~~ 136 (136)
+. .|... .|.-. ..|+.. .+.|.|+|-+||.
T Consensus 777 i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfs 818 (1289)
T KOG1214|consen 777 ITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFS 818 (1289)
T ss_pred ecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCcc
Confidence 33 34433 44333 345444 3568999999984
No 8
>KOG1219|consensus
Probab=98.57 E-value=2.1e-07 Score=71.53 Aligned_cols=86 Identities=35% Similarity=0.822 Sum_probs=68.5
Q ss_pred eeeecceeeeeeCCCCCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCeeeecCCCee
Q psy2856 8 IINISQFVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYH 87 (136)
Q Consensus 8 ~~~~~~~~~c~~~~~c~~~~~~~~~~~C~~~~g~~~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c~~~~~~~~ 87 (136)
...+++..--.++++|.. +||..++.|....+.|.|.|+.||+|..++. ..+++|..+. |..++.|.+..++|.
T Consensus 3891 psqysG~~CEi~~epC~s-nPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~-~Gi~eCs~n~----C~~gg~C~n~~gsf~ 3964 (4289)
T KOG1219|consen 3891 PSQYSGNHCEIDLEPCAS-NPCLTGGTCIPFYNGFLCNCPNGYTGKRCEA-RGISECSKNV----CGTGGQCINIPGSFH 3964 (4289)
T ss_pred cccccCcccccccccccC-CCCCCCCEEEecCCCeeEeCCCCccCceeec-cccccccccc----ccCCceeeccCCceE
Confidence 333443333347888884 8999999999999999999999999987641 2377887655 999999999999999
Q ss_pred eeCCCCceeCCC
Q psy2856 88 CECPPGYHGDAF 99 (136)
Q Consensus 88 c~c~~g~~~~~~ 99 (136)
|.|.+||.+..+
T Consensus 3965 CncT~g~~gr~c 3976 (4289)
T KOG1219|consen 3965 CNCTPGILGRTC 3976 (4289)
T ss_pred eccChhHhcccC
Confidence 999999987653
No 9
>KOG1217|consensus
Probab=98.36 E-value=1.1e-05 Score=54.78 Aligned_cols=113 Identities=47% Similarity=1.073 Sum_probs=78.5
Q ss_pred CCCC-CCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCC------ccc-----------CCcccCCCCCCCCCCC-Ceeee
Q psy2856 21 NECA-HPNACGVNALCQNYPGNYTCSCQPGYTGNPFEG------CID-----------IDECQYASTHPVCGPG-ARCTN 81 (136)
Q Consensus 21 ~~c~-~~~~~~~~~~C~~~~g~~~C~c~~g~~~~~~~~------c~~-----------~~~c~~~~~~~~c~~~-~~c~~ 81 (136)
++|. ....|.+...|.+..++|.|.|.++|.+..... |.. ...|..... .+... ..|..
T Consensus 170 ~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~--~~~~~~~~c~~ 247 (487)
T KOG1217|consen 170 DECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPECEVSIV--ECASGDGTCVN 247 (487)
T ss_pred cccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCcccccc--cccCCCCcccc
Confidence 5676 334688888999999999999999998875421 211 111111100 12211 56777
Q ss_pred cCCCeeeeCCCCceeCCCCcceeeCCCCCCCC-CCCCCeeeecCCCeeEeCCCCCC
Q psy2856 82 FPGGYHCECPPGYHGDAFTTGCVDADECVNRP-CGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 82 ~~~~~~c~c~~g~~~~~~~~~~~~~~~c~~~~-~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
..+.+.|.+..||.+... ..+.++++|.... +...+.|++..+.|.|.|++||.
T Consensus 248 ~~~~~~C~~~~g~~~~~~-~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~ 302 (487)
T KOG1217|consen 248 TVGSYTCRCPEGYTGDAC-VTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFT 302 (487)
T ss_pred cCCceeeeCCCCcccccc-ceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCC
Confidence 777889999999987652 2356788888764 77789999998889999999984
No 10
>KOG1217|consensus
Probab=98.34 E-value=9.3e-06 Score=55.19 Aligned_cols=116 Identities=41% Similarity=1.045 Sum_probs=80.0
Q ss_pred eeeeCCCCCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCee--eecCCCeeeeCCCC
Q psy2856 16 VFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARC--TNFPGGYHCECPPG 93 (136)
Q Consensus 16 ~c~~~~~c~~~~~~~~~~~C~~~~g~~~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c--~~~~~~~~c~c~~g 93 (136)
.+.++++|....+|.+.+.|.+..+.|.|.|.+||.+.....+.+...|........|..+..| ......+.|.+..+
T Consensus 267 ~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~ 346 (487)
T KOG1217|consen 267 TCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPG 346 (487)
T ss_pred eeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCC
Confidence 5678999986334888899999998899999999999865223444555421111125555566 22334566888877
Q ss_pred ceeCCCCcceeeC-CCCCCCCCCCCCeeee-cCCCeeEeCCCCC
Q psy2856 94 YHGDAFTTGCVDA-DECVNRPCGKDALCSN-VDGSYTCTCPPGF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~~-~~c~~~~~~~~~~c~~-~~g~~~c~C~~g~ 135 (136)
+.+.. |.+. ++|....+...+.|++ ..+.+.|.|+.+|
T Consensus 347 ~~g~~----C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~ 386 (487)
T KOG1217|consen 347 FTGRR----CEDSNDECASSPCCPGGTCVNETPGSYRCACPAGF 386 (487)
T ss_pred CCCCc----cccCCccccCCccccCCEeccCCCCCeEecCCCcc
Confidence 55443 4455 4787777777889998 6889999999876
No 11
>KOG4260|consensus
Probab=98.32 E-value=3.9e-07 Score=56.38 Aligned_cols=75 Identities=31% Similarity=0.686 Sum_probs=54.7
Q ss_pred ceeeeeeCCCCCC-CCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCccc-CCcccCCCCCCCCCCCCeeeecCCCeeeeC
Q psy2856 13 QFVVFVDINECAH-PNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCID-IDECQYASTHPVCGPGARCTNFPGGYHCEC 90 (136)
Q Consensus 13 ~~~~c~~~~~c~~-~~~~~~~~~C~~~~g~~~C~c~~g~~~~~~~~c~~-~~~c~~~~~~~~c~~~~~c~~~~~~~~c~c 90 (136)
.+..|.|||+|.. +.+|.....|+|+.|+|.|..++||.... ..|.- .+.|. .....|.+..+.|+|+|
T Consensus 229 de~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~-d~C~~~~d~~~--------~kn~~c~ni~~~~r~v~ 299 (350)
T KOG4260|consen 229 DEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGV-DECQFCADVCA--------SKNRPCMNIDGQYRCVC 299 (350)
T ss_pred cccccccHHHHhcCCCCCChhheeecCCCceEecccccccCCh-HHhhhhhhhcc--------cCCCCcccCCccEEEEe
Confidence 4678999999984 56899999999999999999999998742 11211 11222 22346777888999999
Q ss_pred CCCcee
Q psy2856 91 PPGYHG 96 (136)
Q Consensus 91 ~~g~~~ 96 (136)
..++..
T Consensus 300 f~~~~~ 305 (350)
T KOG4260|consen 300 FSGLII 305 (350)
T ss_pred ccccee
Confidence 888753
No 12
>KOG4260|consensus
Probab=98.20 E-value=1.8e-06 Score=53.59 Aligned_cols=106 Identities=32% Similarity=0.703 Sum_probs=66.9
Q ss_pred CCCCCCeeeeC---CCCeEeeCCCCCccCCCCCcccCCc-ccCCCCCCC---CC--CCCeeeecCCCeee-eCCCCceeC
Q psy2856 28 ACGVNALCQNY---PGNYTCSCQPGYTGNPFEGCIDIDE-CQYASTHPV---CG--PGARCTNFPGGYHC-ECPPGYHGD 97 (136)
Q Consensus 28 ~~~~~~~C~~~---~g~~~C~c~~g~~~~~~~~c~~~~~-c~~~~~~~~---c~--~~~~c~~~~~~~~c-~c~~g~~~~ 97 (136)
+|.-++.|... .|+-.|.|..||.|..+..|..... -.....+-. |. ....|.. ..+..| .|..||...
T Consensus 151 ~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg-~~~k~C~kCkkGW~ld 229 (350)
T KOG4260|consen 151 PCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSG-ESSKGCSKCKKGWKLD 229 (350)
T ss_pred CcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCC-CCCCChhhhcccceec
Confidence 56666777542 3677999999999987655532100 000000000 10 1123422 222345 588999876
Q ss_pred CCCcceeeCCCCCCC--CCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 98 AFTTGCVDADECVNR--PCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 98 ~~~~~~~~~~~c~~~--~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
. ..|.||+||... .|...+.|+|+.|+|.|.+.+||.
T Consensus 230 e--~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~ 268 (350)
T KOG4260|consen 230 E--EGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYK 268 (350)
T ss_pred c--cccccHHHHhcCCCCCChhheeecCCCceEeccccccc
Confidence 4 348999999865 788889999999999999988873
No 13
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=98.19 E-value=5.5e-06 Score=36.49 Aligned_cols=33 Identities=52% Similarity=1.123 Sum_probs=27.6
Q ss_pred eCCCCCCCCCCCCCCeeeeCCCCeEeeCCCCCc
Q psy2856 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYT 51 (136)
Q Consensus 19 ~~~~c~~~~~~~~~~~C~~~~g~~~C~c~~g~~ 51 (136)
++++|....+|.+.+.|.++.++|.|.|..||.
T Consensus 1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CcccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 467786435788888999999999999999997
No 14
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.99 E-value=1.6e-05 Score=34.97 Aligned_cols=31 Identities=48% Similarity=1.244 Sum_probs=25.4
Q ss_pred CCCCCC-CCCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 106 ADECVN-RPCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 106 ~~~c~~-~~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
+++|.. ..|...+.|+++.++|.|.|++||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 456766 5677777999999999999999984
No 15
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.97 E-value=9.5e-06 Score=31.66 Aligned_cols=24 Identities=46% Similarity=1.036 Sum_probs=20.3
Q ss_pred CeeeeCCCCceeCCCCcceeeCCC
Q psy2856 85 GYHCECPPGYHGDAFTTGCVDADE 108 (136)
Q Consensus 85 ~~~c~c~~g~~~~~~~~~~~~~~~ 108 (136)
+|.|.|+.||...+....|.||+|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 478999999998877778888875
No 16
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.91 E-value=8.3e-06 Score=34.40 Aligned_cols=27 Identities=52% Similarity=1.277 Sum_probs=24.7
Q ss_pred CCCCCCCeeeeCC-CCeEeeCCCCCccC
Q psy2856 27 NACGVNALCQNYP-GNYTCSCQPGYTGN 53 (136)
Q Consensus 27 ~~~~~~~~C~~~~-g~~~C~c~~g~~~~ 53 (136)
++|.+++.|+... +.|.|.|.+||.|.
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 6899999999999 99999999999874
No 17
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.85 E-value=5.9e-05 Score=32.75 Aligned_cols=34 Identities=53% Similarity=1.131 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCCeeeeCCCCeEeeCCCCCccC
Q psy2856 20 INECAHPNACGVNALCQNYPGNYTCSCQPGYTGN 53 (136)
Q Consensus 20 ~~~c~~~~~~~~~~~C~~~~g~~~C~c~~g~~~~ 53 (136)
+++|....+|.+.+.|.+..+.|.|.|..||.+.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 35 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCC
Confidence 5677632467778899999999999999999874
No 18
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=97.76 E-value=1.1e-05 Score=47.55 Aligned_cols=100 Identities=28% Similarity=0.659 Sum_probs=63.3
Q ss_pred CCeeeeCCCCeEeeCCCCCccCCCCCcccCCcccC-CCCCCCCCCCCeeeecC-----CCeeeeCCCCceeCCCCcceee
Q psy2856 32 NALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQY-ASTHPVCGPGARCTNFP-----GGYHCECPPGYHGDAFTTGCVD 105 (136)
Q Consensus 32 ~~~C~~~~g~~~C~c~~g~~~~~~~~c~~~~~c~~-~~~~~~c~~~~~c~~~~-----~~~~c~c~~g~~~~~~~~~~~~ 105 (136)
++..+++.++|.|.|..||......+|....+|.. .....+|+..+.|.... ..+.|.|..||...... |.
T Consensus 10 NG~LiQMSNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~v--Cv- 86 (197)
T PF06247_consen 10 NGYLIQMSNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGV--CV- 86 (197)
T ss_dssp TEEEEEESSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSS--EE-
T ss_pred CCEEEEccCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCe--Ec-
Confidence 46678888999999999998877677888877765 23233577777887654 46899999999976542 43
Q ss_pred CCCCCCCCCCCCCeeeecC---CCeeEeCCCCC
Q psy2856 106 ADECVNRPCGKDALCSNVD---GSYTCTCPPGF 135 (136)
Q Consensus 106 ~~~c~~~~~~~~~~c~~~~---g~~~c~C~~g~ 135 (136)
..+|....|. .+.|+..+ ....|+|..|+
T Consensus 87 p~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGk 118 (197)
T PF06247_consen 87 PNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGK 118 (197)
T ss_dssp EGGGSS---T-TEEEEEEEGGGSEEEEEE-TEE
T ss_pred hhhcCceecC-CCeEEecCCCCCCceeEeeece
Confidence 2356655666 57887432 23478887664
No 19
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.74 E-value=1.7e-05 Score=34.32 Aligned_cols=24 Identities=46% Similarity=1.214 Sum_probs=19.5
Q ss_pred CCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 113 PCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 113 ~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
....++.|++++++|.|.|++||.
T Consensus 5 NGgC~h~C~~~~g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 5 NGGCSHICVNTPGSYRCSCPPGYK 28 (36)
T ss_dssp GGGSSSEEEEETTSEEEE-STTEE
T ss_pred CCCcCCCCccCCCceEeECCCCCE
Confidence 445678999999999999999983
No 20
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.68 E-value=2.7e-05 Score=32.79 Aligned_cols=28 Identities=43% Similarity=1.305 Sum_probs=23.2
Q ss_pred CCCCCCCCCCeeeecC-CCeeEeCCCCCC
Q psy2856 109 CVNRPCGKDALCSNVD-GSYTCTCPPGFR 136 (136)
Q Consensus 109 c~~~~~~~~~~c~~~~-g~~~c~C~~g~~ 136 (136)
|.+..|.+++.|++.. +.|.|.|++||.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCc
Confidence 3445788889999998 999999999983
No 21
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.65 E-value=7.8e-05 Score=29.08 Aligned_cols=23 Identities=61% Similarity=1.221 Sum_probs=17.0
Q ss_pred CeEeeCCCCCccCCC-CCcccCCc
Q psy2856 41 NYTCSCQPGYTGNPF-EGCIDIDE 63 (136)
Q Consensus 41 ~~~C~c~~g~~~~~~-~~c~~~~~ 63 (136)
+|.|.|++||..... ..|.++++
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 589999999987643 55666653
No 22
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.59 E-value=5.3e-05 Score=32.78 Aligned_cols=28 Identities=50% Similarity=1.175 Sum_probs=22.3
Q ss_pred CCCCCCCeeeeCCCCeEeeCCCCCccCC
Q psy2856 27 NACGVNALCQNYPGNYTCSCQPGYTGNP 54 (136)
Q Consensus 27 ~~~~~~~~C~~~~g~~~C~c~~g~~~~~ 54 (136)
..|...+.|.++.++|.|.|++||.|+.
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCC
Confidence 3577889999999999999999999875
No 23
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.50 E-value=0.00025 Score=30.68 Aligned_cols=31 Identities=48% Similarity=1.262 Sum_probs=24.1
Q ss_pred CCCCCC-CCCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 106 ADECVN-RPCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 106 ~~~c~~-~~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
+++|.. ..|...+.|++..+.|.|.|+.||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 345655 4666678999999999999999874
No 24
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=97.27 E-value=0.0009 Score=28.38 Aligned_cols=27 Identities=52% Similarity=1.271 Sum_probs=23.5
Q ss_pred CCCCCCCeeeeCCCCeEeeCCCCCccC
Q psy2856 27 NACGVNALCQNYPGNYTCSCQPGYTGN 53 (136)
Q Consensus 27 ~~~~~~~~C~~~~g~~~C~c~~g~~~~ 53 (136)
.+|.+++.|.+..+.|.|.|..||.+.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 567778899999999999999999876
No 25
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=97.19 E-value=0.0011 Score=28.14 Aligned_cols=25 Identities=48% Similarity=1.326 Sum_probs=20.7
Q ss_pred CCCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 112 RPCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 112 ~~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
..|..++.|++..+.+.|.|+.||.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~ 30 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYT 30 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCc
Confidence 3566668999999999999999984
No 26
>smart00181 EGF Epidermal growth factor-like domain.
Probab=97.11 E-value=0.0013 Score=27.94 Aligned_cols=23 Identities=57% Similarity=1.479 Sum_probs=19.3
Q ss_pred CCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 113 PCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 113 ~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
.|..+ .|++..+++.|.|++||.
T Consensus 7 ~C~~~-~C~~~~~~~~C~C~~g~~ 29 (35)
T smart00181 7 PCSNG-TCINTPGSYTCSCPPGYT 29 (35)
T ss_pred CCCCC-EEECCCCCeEeECCCCCc
Confidence 56555 899999999999999984
No 27
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.07 E-value=0.00036 Score=30.19 Aligned_cols=24 Identities=54% Similarity=1.273 Sum_probs=18.6
Q ss_pred CCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 113 PCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 113 ~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
.|+.++.|+++.+++.|+|.+||.
T Consensus 7 ~C~~nA~C~~~~~~~~C~C~~Gy~ 30 (36)
T PF12947_consen 7 GCHPNATCTNTGGSYTCTCKPGYE 30 (36)
T ss_dssp GS-TTCEEEE-TTSEEEEE-CEEE
T ss_pred CCCCCcEeecCCCCEEeECCCCCc
Confidence 577889999999999999999873
No 28
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.98 E-value=0.0023 Score=27.21 Aligned_cols=26 Identities=58% Similarity=1.340 Sum_probs=21.7
Q ss_pred CCCCCCCeeeeCCCCeEeeCCCCCccC
Q psy2856 27 NACGVNALCQNYPGNYTCSCQPGYTGN 53 (136)
Q Consensus 27 ~~~~~~~~C~~~~g~~~C~c~~g~~~~ 53 (136)
.+|.++ .|.+..++|.|.|..||.+.
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccC
Confidence 356666 89999999999999999873
No 29
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=96.59 E-value=0.0052 Score=26.53 Aligned_cols=25 Identities=44% Similarity=1.018 Sum_probs=19.5
Q ss_pred CCeeeecCCCeeeeCCCCceeCCCC
Q psy2856 76 GARCTNFPGGYHCECPPGYHGDAFT 100 (136)
Q Consensus 76 ~~~c~~~~~~~~c~c~~g~~~~~~~ 100 (136)
...|++..+++.|.|+.||.+....
T Consensus 9 ~h~C~~~~g~~~C~C~~Gy~L~~D~ 33 (36)
T PF14670_consen 9 SHICVNTPGSYRCSCPPGYKLAEDG 33 (36)
T ss_dssp SSEEEEETTSEEEE-STTEEE-TTS
T ss_pred CCCCccCCCceEeECCCCCEECcCC
Confidence 4689999999999999999886543
No 30
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.55 E-value=0.0033 Score=38.99 Aligned_cols=40 Identities=33% Similarity=0.687 Sum_probs=31.3
Q ss_pred ceeeeeeCCCCCCCC-CCCCCCeeeeCCCCeEeeCCCCCccCC
Q psy2856 13 QFVVFVDINECAHPN-ACGVNALCQNYPGNYTCSCQPGYTGNP 54 (136)
Q Consensus 13 ~~~~c~~~~~c~~~~-~~~~~~~C~~~~g~~~C~c~~g~~~~~ 54 (136)
....|.++++|...+ .| ...|.++.|+|.|.|.+||....
T Consensus 180 ~~~~C~~~~~C~~~~~~c--~~~C~~~~g~~~c~c~~g~~~~~ 220 (224)
T cd01475 180 QGKICVVPDLCATLSHVC--QQVCISTPGSYLCACTEGYALLE 220 (224)
T ss_pred ccccCcCchhhcCCCCCc--cceEEcCCCCEEeECCCCccCCC
Confidence 346788899997532 44 46899999999999999997653
No 31
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.52 E-value=0.0031 Score=39.10 Aligned_cols=35 Identities=31% Similarity=0.711 Sum_probs=28.2
Q ss_pred ceeeCCCCCCCCCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 102 GCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 102 ~~~~~~~c~~~~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
.|.+.++|......+.+.|.++.|+|.|.|+.||.
T Consensus 183 ~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~ 217 (224)
T cd01475 183 ICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYA 217 (224)
T ss_pred cCcCchhhcCCCCCccceEEcCCCCEEeECCCCcc
Confidence 46677888765545568999999999999999984
No 32
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=96.27 E-value=0.0044 Score=36.87 Aligned_cols=114 Identities=30% Similarity=0.686 Sum_probs=63.9
Q ss_pred ceeeeeeCCCCCCC----CCCCCCCeeeeCC-----CCeEeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCeeeecC
Q psy2856 13 QFVVFVDINECAHP----NACGVNALCQNYP-----GNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFP 83 (136)
Q Consensus 13 ~~~~c~~~~~c~~~----~~~~~~~~C~~~~-----g~~~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c~~~~ 83 (136)
.+.+|....+|... .+|+..+.|.+.. ..|.|.|.+||..... .|.+ ..|.... |+. +.|+...
T Consensus 32 ~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~-vCvp-~~C~~~~----Cg~-GKCI~d~ 104 (197)
T PF06247_consen 32 NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG-VCVP-NKCNNKD----CGS-GKCILDP 104 (197)
T ss_dssp ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS-SEEE-GGGSS-------TT-EEEEEEE
T ss_pred cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC-eEch-hhcCcee----cCC-CeEEecC
Confidence 57899988888752 2688889998765 4689999999987653 3432 3455443 763 5776432
Q ss_pred ---CCeeeeCCCCceeCCCCcceee--CCCCCCCCCCCCCeeeecCCCeeEeCCCCC
Q psy2856 84 ---GGYHCECPPGYHGDAFTTGCVD--ADECVNRPCGKDALCSNVDGSYTCTCPPGF 135 (136)
Q Consensus 84 ---~~~~c~c~~g~~~~~~~~~~~~--~~~c~~~~~~~~~~c~~~~g~~~c~C~~g~ 135 (136)
....|+|.-|+...... .|.- -.+|.. .|..+..|..+.+-|.|.+..++
T Consensus 105 ~~~~~~~CSC~IGkV~~dn~-kCtk~G~T~C~L-KCk~nE~CK~~~~~Y~C~~~~~~ 159 (197)
T PF06247_consen 105 DNPNNPTCSCNIGKVPDDNK-KCTKTGETKCSL-KCKENEECKLVDGYYKCVCKEGF 159 (197)
T ss_dssp GGGSEEEEEE-TEEETTTTT-ESEEEE---------TTTEEEEEETTEEEEEE-TT-
T ss_pred CCCCCceeEeeeceEeccCC-cccCCCccceee-ecCCCcceeeeCcEEEeecCCCC
Confidence 24489999998832221 1221 123332 45667889999988999988765
No 33
>KOG1225|consensus
Probab=95.80 E-value=0.055 Score=37.83 Aligned_cols=70 Identities=36% Similarity=0.983 Sum_probs=36.2
Q ss_pred EeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCeeeecCCCeeeeCCCCceeCCCCcceeeCCCCCCCCCCCCCeeee
Q psy2856 43 TCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSN 122 (136)
Q Consensus 43 ~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c~~~~~~~~c~c~~g~~~~~~~~~~~~~~~c~~~~~~~~~~c~~ 122 (136)
+|.|.+||.|..+.. -.|.. .|..+..+ ..+ .|.|.++|.+..+.. ..| +.+|..++.|+
T Consensus 266 ~CIC~~Gf~G~dC~e----~~Cp~-----~cs~~g~~--~~g--~CiC~~g~~G~dCs~-----~~c-padC~g~G~Ci- 325 (525)
T KOG1225|consen 266 RCICPPGFTGDDCDE----LVCPV-----DCSGGGVC--VDG--ECICNPGYSGKDCSI-----RRC-PADCSGHGKCI- 325 (525)
T ss_pred eEeCCCCCcCCCCCc----ccCCc-----ccCCCcee--cCC--EeecCCCcccccccc-----ccC-CccCCCCCccc-
Confidence 688889988876531 11221 12222222 222 678888888776531 112 13455555665
Q ss_pred cCCCeeEeCCCCC
Q psy2856 123 VDGSYTCTCPPGF 135 (136)
Q Consensus 123 ~~g~~~c~C~~g~ 135 (136)
.| .|.|.+||
T Consensus 326 -~G--~C~C~~Gy 335 (525)
T KOG1225|consen 326 -DG--ECLCDEGY 335 (525)
T ss_pred -CC--ceEeCCCC
Confidence 11 45565555
No 34
>KOG1225|consensus
Probab=95.03 E-value=0.15 Score=35.77 Aligned_cols=45 Identities=36% Similarity=0.954 Sum_probs=31.1
Q ss_pred EeeCCCCCccCCCCCcccCCcccCCCCCCCCCCCCeeeecCCCeeeeCCCCceeCCCC
Q psy2856 43 TCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFT 100 (136)
Q Consensus 43 ~C~c~~g~~~~~~~~c~~~~~c~~~~~~~~c~~~~~c~~~~~~~~c~c~~g~~~~~~~ 100 (136)
.|.|.+||+|..+. .. .|. .+ |.....|+ .+ .|.|.+||.+..+.
T Consensus 297 ~CiC~~g~~G~dCs---~~-~cp-ad----C~g~G~Ci--~G--~C~C~~Gy~G~~C~ 341 (525)
T KOG1225|consen 297 ECICNPGYSGKDCS---IR-RCP-AD----CSGHGKCI--DG--ECLCDEGYTGELCI 341 (525)
T ss_pred EeecCCCccccccc---cc-cCC-cc----CCCCCccc--CC--ceEeCCCCcCCccc
Confidence 89999999998652 11 132 12 66667786 22 78999999987754
No 35
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=94.27 E-value=0.026 Score=18.53 Aligned_cols=12 Identities=58% Similarity=1.417 Sum_probs=8.3
Q ss_pred EeeCCCCCccCC
Q psy2856 43 TCSCQPGYTGNP 54 (136)
Q Consensus 43 ~C~c~~g~~~~~ 54 (136)
.|.|.+||.|..
T Consensus 1 ~C~C~~G~~G~~ 12 (13)
T PF12661_consen 1 TCQCPPGWTGPN 12 (13)
T ss_dssp EEEE-TTEETTT
T ss_pred CccCcCCCcCCC
Confidence 478899998763
No 36
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=93.23 E-value=0.057 Score=23.34 Aligned_cols=28 Identities=36% Similarity=0.731 Sum_probs=20.0
Q ss_pred CCCCCCCeeeeCC-CCeEeeCCCCCccCC
Q psy2856 27 NACGVNALCQNYP-GNYTCSCQPGYTGNP 54 (136)
Q Consensus 27 ~~~~~~~~C~~~~-g~~~C~c~~g~~~~~ 54 (136)
..|..++.|++.. |+..|.|..||+...
T Consensus 5 ~~cP~NA~C~~~~dG~eecrCllgyk~~~ 33 (37)
T PF12946_consen 5 TKCPANAGCFRYDDGSEECRCLLGYKKVG 33 (37)
T ss_dssp S---TTEEEEEETTSEEEEEE-TTEEEET
T ss_pred ccCCCCcccEEcCCCCEEEEeeCCccccC
Confidence 4566788999887 999999999997643
No 37
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=92.39 E-value=0.25 Score=27.04 Aligned_cols=33 Identities=30% Similarity=0.827 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCeeeeCCCCeEeeCCCCCccC
Q psy2856 20 INECAHPNACGVNALCQNYPGNYTCSCQPGYTGN 53 (136)
Q Consensus 20 ~~~c~~~~~~~~~~~C~~~~g~~~C~c~~g~~~~ 53 (136)
.++|.....|+..+.|.. .....|.|.+||...
T Consensus 77 ~d~Cd~y~~CG~~g~C~~-~~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 77 KDQCDVYGFCGPNGICNS-NNSPKCSCLPGFEPK 109 (110)
T ss_pred ccCCCCccccCCccEeCC-CCCCceECCCCcCCC
Confidence 456765567999999943 345679999999653
No 38
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=91.01 E-value=0.54 Score=19.62 Aligned_cols=25 Identities=32% Similarity=0.736 Sum_probs=19.2
Q ss_pred CCCCCCeeeeCCCCeEeeCCCCCccCC
Q psy2856 28 ACGVNALCQNYPGNYTCSCQPGYTGNP 54 (136)
Q Consensus 28 ~~~~~~~C~~~~g~~~C~c~~g~~~~~ 54 (136)
.|..+++|... ...|.|.+||.|..
T Consensus 7 ~C~~~G~C~~~--~g~C~C~~g~~G~~ 31 (32)
T PF07974_consen 7 ICSGHGTCVSP--CGRCVCDSGYTGPD 31 (32)
T ss_pred ccCCCCEEeCC--CCEEECCCCCcCCC
Confidence 47778889765 34899999998863
No 39
>KOG1226|consensus
Probab=83.56 E-value=7.8 Score=28.92 Aligned_cols=22 Identities=36% Similarity=0.984 Sum_probs=14.7
Q ss_pred CeeeeCCCCeE---eeCCCCCccCCC
Q psy2856 33 ALCQNYPGNYT---CSCQPGYTGNPF 55 (136)
Q Consensus 33 ~~C~~~~g~~~---C~c~~g~~~~~~ 55 (136)
..|. ..|.+. |.|.+||.|..+
T Consensus 467 ~~C~-g~G~~~CG~C~C~~G~~G~~C 491 (783)
T KOG1226|consen 467 ALCH-GNGTFVCGQCRCDEGWLGKKC 491 (783)
T ss_pred cccC-CCCcEEecceecCCCCCCCcc
Confidence 3454 345554 689999998765
No 40
>KOG3516|consensus
Probab=80.29 E-value=1.9 Score=33.45 Aligned_cols=40 Identities=25% Similarity=0.664 Sum_probs=32.3
Q ss_pred eeeeeCCCCCCCCCCCCCCeeeeCCCCeEeeCC-CCCccCCC
Q psy2856 15 VVFVDINECAHPNACGVNALCQNYPGNYTCSCQ-PGYTGNPF 55 (136)
Q Consensus 15 ~~c~~~~~c~~~~~~~~~~~C~~~~g~~~C~c~-~g~~~~~~ 55 (136)
..|.-++.|. |++|++++.|......|.|.|. .||+|..+
T Consensus 540 d~C~i~drCl-PN~CehgG~C~Qs~~~f~C~C~~TGY~GatC 580 (1306)
T KOG3516|consen 540 DMCGISDRCL-PNPCEHGGKCSQSWDDFECNCELTGYKGATC 580 (1306)
T ss_pred cccccccccC-CccccCCCcccccccceeEeccccccccccc
Confidence 4455566676 5899999999998899999998 88888654
No 41
>PHA02887 EGF-like protein; Provisional
Probab=69.23 E-value=8 Score=21.61 Aligned_cols=27 Identities=37% Similarity=0.669 Sum_probs=19.0
Q ss_pred CCCCCCeeeeCC--CCeEeeCCCCCccCCC
Q psy2856 28 ACGVNALCQNYP--GNYTCSCQPGYTGNPF 55 (136)
Q Consensus 28 ~~~~~~~C~~~~--g~~~C~c~~g~~~~~~ 55 (136)
.|- ++.|.-.. ....|.|..||.|..+
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RC 121 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGIRC 121 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccCCC
Confidence 355 35776544 5678999999998754
No 42
>smart00051 DSL delta serrate ligand.
Probab=62.12 E-value=18 Score=17.74 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=23.5
Q ss_pred eeeeCCCCceeCCCCcceeeCCCCCCCCCCCCCeeeecCCCeeEeCCCCCC
Q psy2856 86 YHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136 (136)
Q Consensus 86 ~~c~c~~g~~~~~~~~~~~~~~~c~~~~~~~~~~c~~~~g~~~c~C~~g~~ 136 (136)
+.-.|..+|.+..+...|...+ ....+..|.. .| .+.|.+||.
T Consensus 17 ~rv~C~~~~yG~~C~~~C~~~~-----d~~~~~~Cd~-~G--~~~C~~Gw~ 59 (63)
T smart00051 17 IRVTCDENYYGEGCNKFCRPRD-----DFFGHYTCDE-NG--NKGCLEGWM 59 (63)
T ss_pred EEeeCCCCCcCCccCCEeCcCc-----cccCCccCCc-CC--CEecCCCCc
Confidence 3456888888777665554322 1222344532 23 367888874
No 43
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=60.76 E-value=14 Score=21.02 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=20.3
Q ss_pred CCCCCCeeeeCC--CCeEeeCCCCCccCCCC
Q psy2856 28 ACGVNALCQNYP--GNYTCSCQPGYTGNPFE 56 (136)
Q Consensus 28 ~~~~~~~C~~~~--g~~~C~c~~g~~~~~~~ 56 (136)
-|.++ .|.-.. ..+.|.|..||.|..++
T Consensus 52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRCE 81 (139)
T PHA03099 52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRCQ 81 (139)
T ss_pred EeECC-EEEeeccCCCceeECCCCccccccc
Confidence 45554 676544 67899999999998653
No 44
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=55.27 E-value=6.2 Score=16.72 Aligned_cols=10 Identities=40% Similarity=1.105 Sum_probs=7.8
Q ss_pred eeEeCCCCCC
Q psy2856 127 YTCTCPPGFR 136 (136)
Q Consensus 127 ~~c~C~~g~~ 136 (136)
..|.|+.||.
T Consensus 18 ~~C~CPeGyI 27 (34)
T PF09064_consen 18 GQCFCPEGYI 27 (34)
T ss_pred CceeCCCceE
Confidence 4789999884
No 45
>KOG3514|consensus
Probab=48.96 E-value=17 Score=28.69 Aligned_cols=33 Identities=24% Similarity=0.715 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCeeeeCCCCeEeeCC-CCCccCCC
Q psy2856 22 ECAHPNACGVNALCQNYPGNYTCSCQ-PGYTGNPF 55 (136)
Q Consensus 22 ~c~~~~~~~~~~~C~~~~g~~~C~c~-~g~~~~~~ 55 (136)
.|. ++||.+.+.|......|.|.|. .+|.|..+
T Consensus 625 ~C~-~nPC~N~g~C~egwNrfiCDCs~T~~~G~~C 658 (1591)
T KOG3514|consen 625 ICE-SNPCQNGGKCSEGWNRFICDCSGTGFEGRTC 658 (1591)
T ss_pred ccC-CCcccCCCCccccccccccccccCcccCccc
Confidence 465 4899999999999999999985 46766654
No 46
>KOG1226|consensus
Probab=46.10 E-value=63 Score=24.60 Aligned_cols=25 Identities=32% Similarity=0.877 Sum_probs=16.2
Q ss_pred EeeCCCCCccCCCCCcccCCcccCC
Q psy2856 43 TCSCQPGYTGNPFEGCIDIDECQYA 67 (136)
Q Consensus 43 ~C~c~~g~~~~~~~~c~~~~~c~~~ 67 (136)
.|.|.+||.|..+.--...+.|...
T Consensus 567 ~CvC~~GwtG~~C~C~~std~C~~~ 591 (783)
T KOG1226|consen 567 RCVCNPGWTGSACNCPLSTDTCESS 591 (783)
T ss_pred cEEcCCCCccCCCCCCCCCccccCC
Confidence 5788999999876422344555543
No 47
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=43.95 E-value=29 Score=15.84 Aligned_cols=17 Identities=35% Similarity=0.935 Sum_probs=12.2
Q ss_pred eEeeCCCCCccCCCCCc
Q psy2856 42 YTCSCQPGYTGNPFEGC 58 (136)
Q Consensus 42 ~~C~c~~g~~~~~~~~c 58 (136)
-.|.|++++.|..++.|
T Consensus 19 G~C~C~~~~~G~~C~~C 35 (50)
T cd00055 19 GQCECKPNTTGRRCDRC 35 (50)
T ss_pred CEEeCCCcCCCCCCCCC
Confidence 37889999888765433
No 48
>KOG4291|consensus
Probab=42.97 E-value=1.6e+02 Score=23.78 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=13.4
Q ss_pred CCCeEeeCCCCCccCCCCCcccCCccc
Q psy2856 39 PGNYTCSCQPGYTGNPFEGCIDIDECQ 65 (136)
Q Consensus 39 ~g~~~C~c~~g~~~~~~~~c~~~~~c~ 65 (136)
.+...|.+..|+.+.....+.+...+.
T Consensus 445 ~~~~q~~~~~G~~~~~~~~~~~~~~~~ 471 (1043)
T KOG4291|consen 445 DGGNQCFCFRGYIYDVPPECEPVSECK 471 (1043)
T ss_pred CCcccceeccCcccccCcccccccccc
Confidence 344566677776654333333434333
No 49
>KOG1836|consensus
Probab=41.64 E-value=58 Score=27.49 Aligned_cols=44 Identities=30% Similarity=0.749 Sum_probs=21.4
Q ss_pred eCCCCceeCCCCcceeeCCCCCCCCCCCCCeeeec--CCCeeEe-CCCCC
Q psy2856 89 ECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNV--DGSYTCT-CPPGF 135 (136)
Q Consensus 89 ~c~~g~~~~~~~~~~~~~~~c~~~~~~~~~~c~~~--~g~~~c~-C~~g~ 135 (136)
+|..||.+.+.... ..| |..=.|..+.-|..+ .....|. |++||
T Consensus 760 ~C~~GfYg~~~~~~--~~d-C~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gy 806 (1705)
T KOG1836|consen 760 QCVDGFYGLPDLGT--SGD-CQPCPCPNGGACGQTPEILEVVCKNCPPGY 806 (1705)
T ss_pred hhcCCCCCccccCC--CCC-CccCCCCCChhhcCcCcccceecCCCCCCC
Confidence 57777766554321 111 433344444444433 2345576 77776
No 50
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=39.75 E-value=39 Score=15.14 Aligned_cols=14 Identities=36% Similarity=0.999 Sum_probs=10.7
Q ss_pred EeeCCCCCccCCCC
Q psy2856 43 TCSCQPGYTGNPFE 56 (136)
Q Consensus 43 ~C~c~~g~~~~~~~ 56 (136)
.|.|++++.+..++
T Consensus 19 ~C~C~~~~~G~~C~ 32 (46)
T smart00180 19 QCECKPNVTGRRCD 32 (46)
T ss_pred EEECCCCCCCCCCC
Confidence 78898888886544
No 51
>KOG0994|consensus
Probab=36.08 E-value=1.5e+02 Score=24.39 Aligned_cols=22 Identities=36% Similarity=0.830 Sum_probs=14.0
Q ss_pred eeeecCCCeee-eCCCCceeCCC
Q psy2856 78 RCTNFPGGYHC-ECPPGYHGDAF 99 (136)
Q Consensus 78 ~c~~~~~~~~c-~c~~g~~~~~~ 99 (136)
.|......+.| +|..||.+.+.
T Consensus 877 ~CqD~T~G~~CdrCl~GyyGdP~ 899 (1758)
T KOG0994|consen 877 DCQDSTTGHSCDRCLDGYYGDPR 899 (1758)
T ss_pred cccccccccchhhhhccccCCcc
Confidence 34444555666 78888887654
No 52
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=33.08 E-value=21 Score=16.14 Aligned_cols=24 Identities=33% Similarity=0.834 Sum_probs=15.8
Q ss_pred CeeeeCCCCeEeeCCCCCccCCCCCc
Q psy2856 33 ALCQNYPGNYTCSCQPGYTGNPFEGC 58 (136)
Q Consensus 33 ~~C~~~~g~~~C~c~~g~~~~~~~~c 58 (136)
..|... ...|.|++++.|..++.|
T Consensus 11 ~~C~~~--~G~C~C~~~~~G~~C~~C 34 (49)
T PF00053_consen 11 QTCDPS--TGQCVCKPGTTGPRCDQC 34 (49)
T ss_dssp SSEEET--CEEESBSTTEESTTS-EE
T ss_pred CcccCC--CCEEeccccccCCcCcCC
Confidence 456553 348899999988876544
No 53
>KOG3516|consensus
Probab=33.00 E-value=47 Score=26.71 Aligned_cols=33 Identities=30% Similarity=0.902 Sum_probs=27.0
Q ss_pred eeeCCCCCCCCCCCCCeeeecCCCeeEeCC-CCC
Q psy2856 103 CVDADECVNRPCGKDALCSNVDGSYTCTCP-PGF 135 (136)
Q Consensus 103 ~~~~~~c~~~~~~~~~~c~~~~g~~~c~C~-~g~ 135 (136)
|.-++.|.++.|..++.|......|.|.|. .||
T Consensus 542 C~i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY 575 (1306)
T KOG3516|consen 542 CGISDRCLPNPCEHGGKCSQSWDDFECNCELTGY 575 (1306)
T ss_pred cccccccCCccccCCCcccccccceeEecccccc
Confidence 555678888899999999988888999987 455
No 54
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=32.75 E-value=57 Score=14.85 Aligned_cols=21 Identities=38% Similarity=0.929 Sum_probs=12.7
Q ss_pred CCCCCeeeeCCCCeEeeCCCCCccC
Q psy2856 29 CGVNALCQNYPGNYTCSCQPGYTGN 53 (136)
Q Consensus 29 ~~~~~~C~~~~g~~~C~c~~g~~~~ 53 (136)
|..++.|.+ -.|.|..||...
T Consensus 28 C~~~s~C~~----g~C~C~~g~~~~ 48 (52)
T PF01683_consen 28 CIGGSVCVN----GRCQCPPGYVEV 48 (52)
T ss_pred CCCcCEEcC----CEeECCCCCEec
Confidence 444556633 378888887543
No 55
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=31.60 E-value=37 Score=15.73 Aligned_cols=20 Identities=40% Similarity=0.933 Sum_probs=12.6
Q ss_pred eeeCCCCceeCCCCcceeeCC
Q psy2856 87 HCECPPGYHGDAFTTGCVDAD 107 (136)
Q Consensus 87 ~c~c~~g~~~~~~~~~~~~~~ 107 (136)
.|.|..||..... ..|+...
T Consensus 34 gC~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 34 GCFCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EEEETTTEEEETT-SEEEEGG
T ss_pred cCCCCCCeeEcCC-CCEEcHH
Confidence 4889999986544 2354443
Done!