RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2856
(136 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 97.8 bits (244), Expect = 4e-27
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFE-GCIDIDECQYASTHPVCGPGA 77
D+NEC P C + C N PG+Y C C P + NP GC+D C
Sbjct: 2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGN-------CYLDI 53
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
R G C G + C + PC + + C GFR
Sbjct: 54 RPRGDNGDTACSNEIGVGVSKASCCCSL-GKAWGTPCEMCPAVNTSEYKILCPGGEGFR 111
Score = 94.0 bits (234), Expect = 1e-25
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 9/120 (7%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
VD C ++ + G+ CS + G + C + + C
Sbjct: 42 VDTRSGN----CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA----WGTPCEMCP 93
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCG-KDALCSNVDGSYTCTCPPGFR 136
C G+ + T D DEC P + C N GS+ C CP G+
Sbjct: 94 AVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYY 153
Score = 67.0 bits (164), Expect = 3e-15
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFE-GCIDIDECQYASTHPVCGPGA 77
+ + C + C G+ NP DIDEC P G
Sbjct: 80 SLGKAWGTP-CEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDEC---QELPGLCQGG 135
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGC 103
+C N G + C CP GY+ + T C
Sbjct: 136 KCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNP 54
DI+EC C N G++ C C GY N
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 156
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 95.7 bits (238), Expect = 2e-26
Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGN------PFEGCIDIDECQYASTHPV 72
D CA C ++ C N C C PG++ P E C DI+EC S
Sbjct: 1 DSRGCARW--CPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVS- 54
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFT--------TGCVDADECV--NRPCGKDALCSN 122
CG + C N G Y C C PGY + C D DEC C +C N
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 123 VDGSYTCTCPPGFR 136
GSY+C C PG++
Sbjct: 115 TVGSYSCRCRPGWK 128
Score = 80.6 bits (199), Expect = 1e-20
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 18 VDINECAHPNA--CGVNALCQNYPGNYTCSCQPGYTGNPFEG---------CIDIDECQY 66
DINECA + CG + C N G+Y C C PGY C D+DEC
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDEC-- 99
Query: 67 ASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADEC 109
+S C C N G Y C C PG+ C
Sbjct: 100 SSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 50.2 bits (120), Expect = 7e-09
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 18 VDINECAH-PNACGVNALCQNYPGNYTCSCQPGYTGNPFE-GCIDIDECQ 65
D++EC+ + C + +C N G+Y+C C+PG+ C+
Sbjct: 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 85.7 bits (213), Expect = 8e-23
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 19 DINECA-HPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
D++EC+ N C C N G++ C C GYTG E ID++EC ++P C A
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE--IDVNEC---VSNP-CQNDA 57
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C + G + C C PGY G V+ DEC + PC + C + + C CP GF
Sbjct: 58 TCLDQIGEFQCICMPGYEG---VHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGF 112
Score = 63.8 bits (156), Expect = 3e-14
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 58 CIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGC-VDADECVNRPCGK 116
D+DEC + C +C N G + C+C GY G C +D +ECV+ PC
Sbjct: 2 AQDVDECSLGAN--PCEHAGKCINTLGSFECQCLQGYTGPR----CEIDVNECVSNPCQN 55
Query: 117 DALCSNVDGSYTCTCPPGF 135
DA C + G + C C PG+
Sbjct: 56 DATCLDQIGEFQCICMPGY 74
Score = 63.0 bits (154), Expect = 7e-14
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
+D+NEC N C +A C + G + C C PGY G E ++ DEC + P C
Sbjct: 43 IDVNECV-SNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDECA---SSP-CLHNG 95
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGC-VDADECVNRPC 114
RC + + CECP G+ G C VD ++
Sbjct: 96 RCLDKINEFQCECPTGFTG----HLCQVDLHHILDAQK 129
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 81.6 bits (202), Expect = 1e-21
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEG--CIDIDECQYASTHPVCGPG 76
DI+EC C N PG++ C C GY C+DIDEC P+ G
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDEC---QRDPLLCRG 58
Query: 77 ARCTNFPGGYHCECPPGYHGDAFTTGCV 104
C N G Y CECPPG+ + C+
Sbjct: 59 GVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 72.7 bits (179), Expect = 4e-18
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFT-TGCVDADECVNRPCG-KD 117
DIDEC P +C N PG + C+C GY C+D DEC P +
Sbjct: 2 DIDEC---RISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRG 58
Query: 118 ALCSNVDGSYTCTCPPGFR 136
+C N +GSY C CPPG +
Sbjct: 59 GVCHNTEGSYRCECPPGHQ 77
Score = 44.2 bits (105), Expect = 4e-07
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNP 54
+DI+EC +C N G+Y C C PG+ +P
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 78.4 bits (194), Expect = 2e-20
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 58 CIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKD 117
+D+DEC+ P +C N G Y CECP GY CVD DEC +
Sbjct: 2 AVDMDECK----EPDVCKHGQCINTDGSYRCECPFGYILAGNE--CVDTDECSVGNPCGN 55
Query: 118 ALCSNVDGSYTCTCPPGFR 136
C NV G + CTC GF
Sbjct: 56 GTCKNVIGGFECTCEEGFE 74
Score = 76.5 bits (189), Expect = 1e-19
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
VD++EC P+ + C N G+Y C C GY C+D DEC +
Sbjct: 3 VDMDECKEPD-VCKHGQCINTDGSYRCECPFGYILAGN-ECVDTDECSVGN----PCGNG 56
Query: 78 RCTNFPGGYHCECPPGYHGDAFTT 101
C N GG+ C C G+ T
Sbjct: 57 TCKNVIGGFECTCEEGFEPGPMMT 80
Score = 45.3 bits (108), Expect = 1e-07
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGC 58
VD +EC+ N CG N C+N G + C+C+ G+ P C
Sbjct: 42 VDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTC 81
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 77.4 bits (191), Expect = 2e-19
Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFE-GCIDIDECQYASTHP------ 71
DI+EC ++ +N +C+N PG++ C C T +P + CI+ + T
Sbjct: 3 DIDECE--SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 72 -------------VCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCG-KD 117
G C GY T C D DEC P K+
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQ-CEDIDECEVFPGVCKN 119
Query: 118 ALCSNVDGSYTCTCPPGFR 136
LC N GS+ C CP G
Sbjct: 120 GLCVNTRGSFKCQCPSGMT 138
Score = 62.0 bits (151), Expect = 2e-13
Identities = 21/86 (24%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
++C C GY+ C DIDEC P
Sbjct: 67 LKSQCCSSLGAAWG--SPCTLCQVDPICGKGYSRIKGTQCEDIDEC---EVFPGVCKNGL 121
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCV 104
C N G + C+CP G DA C+
Sbjct: 122 CVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 39.6 bits (93), Expect = 5e-05
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNP 54
DI+EC N LC N G++ C C G T +
Sbjct: 105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDA 141
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 73.5 bits (181), Expect = 2e-18
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 32 NALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECP 91
+ + +Y +G + +EC + G C + GY C CP
Sbjct: 3 HHHHHHPMSDYDIPTTENLYF---QGAMGTNECLDNN----GGCSYVCNDLKIGYECLCP 55
Query: 92 PGYHGDAFTTGCVDADEC-VNRPCGKDALCSNVDGSYTCTCPPGFR 136
G+ A C D DEC C LC N++G Y C C GF+
Sbjct: 56 DGFQLVAQRR-CEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQ 98
Score = 59.7 bits (145), Expect = 7e-13
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
+ NEC N G + +C + Y C C G+ C DIDECQ
Sbjct: 27 MGTNECLDNN-GGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPD-----TCSQ 80
Query: 78 RCTNFPGGYHCECPPGY 94
C N GGY C+C G+
Sbjct: 81 LCVNLEGGYKCQCEEGF 97
Score = 36.5 bits (85), Expect = 4e-04
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNP 54
DI+EC P+ C + LC N G Y C C+ G+ +P
Sbjct: 67 EDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDP 101
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 72.0 bits (177), Expect = 1e-17
Identities = 29/119 (24%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 19 DINECAHPNACGVNALCQNY-PGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
++ C CQ +Y C C G+ P E C
Sbjct: 3 PVDPCFR---ANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCN-------QTACP 52
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+ CECP GY D C D DEC N +C N+ G++ C C P
Sbjct: 53 ADCDPNTQASCECPEGYILDDGFI-CTDIDECEN-GGFCSGVCHNLPGTFECICGPDSA 109
Score = 55.1 bits (133), Expect = 6e-11
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
+ + C + +C C GY + C DIDEC+
Sbjct: 38 EPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENG-----GFCSGV 92
Query: 79 CTNFPGGYHCECPPGYHGDA 98
C N PG + C C P
Sbjct: 93 CHNLPGTFECICGPDSALAG 112
Score = 38.5 bits (90), Expect = 9e-05
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEG 57
DI+EC + C + +C N PG + C C P G
Sbjct: 78 TDIDECENGGFC--SGVCHNLPGTFECICGPDSALAGQIG 115
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 75.8 bits (186), Expect = 3e-17
Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 19 DINECAHPNACGVNALCQNYP-GNYTC-SCQPGYTGNPFEGCIDIDECQYAS-THPVCGP 75
D + C N C A C ++P G+++C C G+ GN C D+DEC
Sbjct: 2 DPDGCL-SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSK 59
Query: 76 GARCTNFPGGYHCE-CPPGYHGDAFT-----------TGCVDADECVNR--PCGKDALCS 121
RC N G+HC CPP Y G+ C + C ++ C K A C
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECI 119
Query: 122 NV----DGSYTCTCPPGF 135
+ D Y C C G+
Sbjct: 120 YLGHFSDPMYKCECQTGY 137
Score = 51.2 bits (122), Expect = 1e-08
Identities = 31/140 (22%), Positives = 44/140 (31%), Gaps = 26/140 (18%)
Query: 18 VDINECAHPN----ACGVNALCQNYPGNYTC-SCQPGYTGNPFEG------------CID 60
D++ECA + C N + C C P Y GN G C
Sbjct: 42 EDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEP 101
Query: 61 IDECQYASTHPVCGPGARCTNFP----GGYHCECPPGYHGDAFTTG---CVDADECVNRP 113
+ C+ + + C A C Y CEC GY GD G +D +N
Sbjct: 102 ENPCKDKTHN--CHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLV 159
Query: 114 CGKDALCSNVDGSYTCTCPP 133
C +A + +
Sbjct: 160 CATNATYHCIKDNCPHLPNS 179
Score = 44.2 bits (104), Expect = 3e-06
Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 7/123 (5%)
Query: 16 VFVDINECA-HPNACGVNALCQNYP----GNYTCSCQPGYTGNPFEGCIDIDECQYASTH 70
V N C + C +A C Y C CQ GY G+ D D + + +
Sbjct: 98 VCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLN 157
Query: 71 PVC--GPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYT 128
VC C + D D+ + + C +
Sbjct: 158 LVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQ 217
Query: 129 CTC 131
Sbjct: 218 ADY 220
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 67.7 bits (166), Expect = 3e-16
Identities = 33/79 (41%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDAL 119
D+DEC S P A C N PG + CECP GY + + C D DEC C L
Sbjct: 2 DVDEC---SLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMC--AQL 56
Query: 120 CSNVDGSYTCTC--PPGFR 136
C N G YTC C GF+
Sbjct: 57 CVNYPGGYTCYCDGKKGFK 75
Score = 65.0 bits (159), Expect = 4e-15
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFE-GCIDIDECQYASTHPVCGPGA 77
D++EC+ + A+C+N PG++ C C GY N C DIDEC S + C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC---SENM-C--AQ 55
Query: 78 RCTNFPGGYHCEC--PPGYHGDAFTTGCVD 105
C N+PGGY C C G+ C
Sbjct: 56 LCVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85
Score = 30.7 bits (70), Expect = 0.042
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSC--QPGYTGNP-FEGCIDI 61
DI+EC+ N C LC NYPG YTC C + G+ + C +
Sbjct: 43 EDIDECSE-NMC--AQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 66.7 bits (163), Expect = 1e-15
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 18 VDINECAHPNA-------CGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTH 70
VD ++C C + C + G+++C C+ G+ G + + C +
Sbjct: 4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDN-- 61
Query: 71 PVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSN 122
G C G C C PGY C V PCG+
Sbjct: 62 --GGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC---HPAVKFPCGRPWKRME 108
Score = 60.1 bits (146), Expect = 5e-13
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 58 CIDIDECQYASTH----PVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRP 113
+D D+C +C C + G + C+C G+ G V C
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR-EVSFLNCSLDN 61
Query: 114 CGKDALCSNVDGSYTCTCPPGFR 136
G C G C+C PG++
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYK 84
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 67.2 bits (163), Expect = 3e-14
Identities = 28/113 (24%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
NEC N G + +C + Y C C G+ C DIDEC C C
Sbjct: 1 NECLDNN-GGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQ--LCV 54
Query: 81 NFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPP 133
N GGY C+C G+ D T C + +
Sbjct: 55 NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 107
Score = 50.2 bits (119), Expect = 3e-08
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCP 132
G C + GY C CP G+ A C D DEC + P LC N++G Y C C
Sbjct: 8 GGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQD-PDTCSQLCVNLEGGYKCQCE 65
Query: 133 PGFR 136
GF+
Sbjct: 66 EGFQ 69
Score = 35.6 bits (81), Expect = 0.003
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 107 DECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+EC++ G +C+++ Y C CP GF+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQ 30
Score = 35.6 bits (81), Expect = 0.003
Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
DI+EC P+ C LC N G Y C C+ G+ +P C+ + R
Sbjct: 39 DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDP-----HTKACKAVGSIAYLFFTNR 91
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKD 117
+ +D + NR D
Sbjct: 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 130
Score = 25.6 bits (55), Expect = 6.8
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCV 104
C P + + C CP G C+
Sbjct: 366 CLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 63.1 bits (154), Expect = 5e-14
Identities = 21/108 (19%), Positives = 27/108 (25%), Gaps = 8/108 (7%)
Query: 29 CGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHC 88
C D D+C T P C +C + G Y C
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWN--KYKDGDQC---ETSP-CQNQGKCKDGLGEYTC 65
Query: 89 ECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C G+ G C D C S C+C G+
Sbjct: 66 TCLEGFEGK--NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111
Score = 61.5 bits (150), Expect = 2e-13
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
D ++C + C C++ G YTC+C G+ G E + + S
Sbjct: 40 KDGDQCE-TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE--LFTRKL--CSLDN-GDCDQ 93
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALC 120
C C C GY C PCGK L
Sbjct: 94 FCHEEQNSVVCSCARGYTLADNGKAC---IPTGPYPCGKQTLE 133
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 62.1 bits (151), Expect = 5e-13
Identities = 14/118 (11%), Positives = 23/118 (19%), Gaps = 8/118 (6%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
+ + + + C + CSC GYT CG
Sbjct: 78 LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG--KACIPTGPYP----CGKQT 131
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
G D+ T D P + + +
Sbjct: 132 LERRKRSVAQATSSSGEAPDSIT--WKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 59.0 bits (143), Expect = 7e-12
Identities = 21/108 (19%), Positives = 27/108 (25%), Gaps = 8/108 (7%)
Query: 29 CGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHC 88
C D D+C T P C +C + G Y C
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWN--KYKDGDQC---ETSP-CQNQGKCKDGLGEYTC 65
Query: 89 ECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C G+ G C D C S C+C G+
Sbjct: 66 TCLEGFEGK--NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 60.4 bits (147), Expect = 8e-13
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
VD ++C PN C LC++ +Y C CQ G+ G E +D
Sbjct: 46 VDGDQCE-PNPCLNGGLCKDDINSYECWCQVGFEGKNCE--LDATCN----IKNGRCKQF 98
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSN 122
T C C GY C V PCG+ ++ +
Sbjct: 99 CKTGADSKVLCSCTTGYRLAPDQKSC---KPAVPFPCGRVSVSHS 140
Score = 54.7 bits (132), Expect = 1e-10
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 35 CQNYPGNYTCSCQ------PGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHC 88
C ++ + + ++ +D D+C +P C G C + Y C
Sbjct: 18 CIEEKCSFEEAREVFENTEKTNEF--WKQYVDGDQC---EPNP-CLNGGLCKDDINSYEC 71
Query: 89 ECPPGYHGDAFTTGC-VDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C G+ G C +DA + K + D C+C G+R
Sbjct: 72 WCQVGFEGKN----CELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYR 116
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 59.3 bits (144), Expect = 2e-12
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
D ++CA + C C++ +Y C C P + G E D+ G
Sbjct: 45 SDGDQCA-SSPCQNGGSCKDQLQSYICFCLPAFEGRNCE--THKDDQLICVNEN-GGCEQ 100
Query: 78 RCTNFPG-GYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALC 120
C++ G C C GY A C V PCGK +
Sbjct: 101 YCSDHTGTKRSCRCHEGYSLLADGVSC---TPTVEYPCGKIPIL 141
Score = 51.2 bits (123), Expect = 2e-09
Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 31 VNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCEC 90
C D D+C ++ P C G C + Y C C
Sbjct: 18 KEEQCSFEEAREIFKDAERTKLFWIS-YSDGDQC---ASSP-CQNGGSCKDQLQSYICFC 72
Query: 91 PPGYHGDAFTTGCVDADECVNRPCGKDALCSN-VDGSYTCTCPPGFR 136
P + G T D CVN G + CS+ +C C G+
Sbjct: 73 LPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 60.0 bits (144), Expect = 3e-12
Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 6/115 (5%)
Query: 26 PNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFP-- 83
+ N ++ C C G C + +EC + CG +C P
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68
Query: 84 ---GGYHCECPPGYHGDAFTTGCVDADECVNRPCGK-DALCSNVDGSYTCTCPPG 134
Y C C GY T G+ + S C+C G
Sbjct: 69 AQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Score = 54.7 bits (130), Expect = 2e-10
Identities = 23/121 (19%), Positives = 32/121 (26%), Gaps = 5/121 (4%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
+ + Y C C GYT +D CQY +
Sbjct: 51 TLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLD--VCQYXNCGESGECIVE 108
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGC---VDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
+ C C G + C + +C NV+G Y C C GF
Sbjct: 109 YLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGF 168
Query: 136 R 136
Sbjct: 169 T 169
Score = 52.0 bits (123), Expect = 3e-09
Identities = 16/93 (17%), Positives = 25/93 (26%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
+ + + CSC G NP + + A
Sbjct: 93 VCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEV 152
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVN 111
C N G Y C+C G+ D C+ +
Sbjct: 153 CXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHHH 185
Score = 25.0 bits (53), Expect = 8.3
Identities = 4/33 (12%), Positives = 8/33 (24%)
Query: 104 VDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+A + + + C C G
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLV 34
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 57.4 bits (139), Expect = 9e-12
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 23/131 (17%)
Query: 22 ECAHPNACGVNALCQN--YPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPV------- 72
C PN C +C G+++C C G+T ++
Sbjct: 2 ICD-PNPCENGGICLPGLADGSFSCECPDGFTDPNCS--SVVEVASDEEEPTSAGPCTPN 58
Query: 73 -CGPGARCTNFPG-------GYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVD 124
C G C GY C+CP G++G + +EC PC +C+++
Sbjct: 59 PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG---IHCQHNINECEVEPCKNGGICTDLV 115
Query: 125 GSYTCTCPPGF 135
+Y+C CP F
Sbjct: 116 ANYSCECPGEF 126
Score = 45.9 bits (109), Expect = 3e-07
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 8 IINISQFVVFVDINECAHPNACGVNALCQ-------NYPGNYTCSCQPGYTGNPFEGCID 60
+ S C PN C C+ + Y C C G+ G + +
Sbjct: 40 VEVASDEEEPTSAGPCT-PNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ--HN 96
Query: 61 IDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGD 97
I+EC P C G CT+ Y CECP + G
Sbjct: 97 INEC---EVEP-CKNGGICTDLVANYSCECPGEFMGR 129
Score = 30.5 bits (69), Expect = 0.11
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 107 DECVNRPCGKDALCSN--VDGSYTCTCPPGF 135
D C PC +C DGS++C CP GF
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGF 31
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 59.0 bits (142), Expect = 2e-11
Identities = 25/98 (25%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEG-CIDIDECQYASTHPVCGPGA 77
C N G CQ G C+C GY C D++EC + C G
Sbjct: 2 GEENCNVNN-GGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC---AEEGYCSQG- 56
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCG 115
CTN G + C C GY C
Sbjct: 57 -CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFA 93
Score = 54.4 bits (130), Expect = 7e-10
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDAL 119
+ C + G +C G C C GY C D +EC
Sbjct: 2 GEENCNVNN----GGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEG-YCSQG 56
Query: 120 CSNVDGSYTCTCPPGFR 136
C+N +G++ C C G+
Sbjct: 57 CTNSEGAFQCWCEAGYE 73
Score = 33.2 bits (75), Expect = 0.019
Identities = 20/113 (17%), Positives = 30/113 (26%), Gaps = 2/113 (1%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
D+NECA C C N G + C C+ GY P + +
Sbjct: 43 DVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 100
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTC 131
Y + A + L +N++GS
Sbjct: 101 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153
Score = 28.6 bits (63), Expect = 0.63
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 91 PPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
P H + C + G LC +YTC CP GFR
Sbjct: 332 PMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR 377
Score = 27.4 bits (60), Expect = 1.5
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 79 CTNFPGGYHCECPPGYH 95
C Y C CP G+
Sbjct: 361 CLPSGQNYTCACPTGFR 377
Score = 26.7 bits (58), Expect = 3.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 34 LCQNYPGNYTCSCQPGYT 51
LC NYTC+C G+
Sbjct: 360 LCLPSGQNYTCACPTGFR 377
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 45.5 bits (108), Expect = 9e-07
Identities = 25/99 (25%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
+ C C N CQ+ YTC+C PGY G+ E + +EC G
Sbjct: 3 KGGSPCI-SQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNEC---HPERTDGCQH 56
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGK 116
C Y C C GY CG
Sbjct: 57 FCLPGQESYTCSCAQGY---RLGEDHKQCVPHDQCACGV 92
Score = 42.0 bits (99), Expect = 1e-05
Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 59 IDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDA 118
C + P C C + GY C C PGY G + R G
Sbjct: 3 KGGSPC---ISQP-CLHNGSCQDSIWGYTCTCSPGYEG--SNCELAKNECHPERTDGCQH 56
Query: 119 LCSNVDGSYTCTCPPGFR 136
C SYTC+C G+R
Sbjct: 57 FCLPGQESYTCSCAQGYR 74
Score = 26.6 bits (59), Expect = 2.7
Identities = 13/66 (19%), Positives = 17/66 (25%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA 77
+ NEC G C +YTCSC GY +
Sbjct: 41 LAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
Query: 78 RCTNFP 83
+ P
Sbjct: 101 DLQDLP 106
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 44.5 bits (105), Expect = 2e-06
Identities = 23/115 (20%), Positives = 28/115 (24%), Gaps = 21/115 (18%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
+ + + + Q CQ A C G C
Sbjct: 112 KQDGVAAFEVDVIVMNSEGNTILKTPQNAIFF---------KTCQQAECPGGCRNGGFCN 162
Query: 81 NFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
CECP G+HG C LC C CPPGF
Sbjct: 163 E---RRICECPDGFHGPHCEK------ALCTPRCMNGGLCVT---PGFCICPPGF 205
Score = 42.5 bits (100), Expect = 9e-06
Identities = 27/115 (23%), Positives = 34/115 (29%), Gaps = 24/115 (20%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
+ C LC C C PG+ G C A+ C G C
Sbjct: 179 EKALCTPRCMNGGLCVT---PGFCICPPGFYG---------VNCDKANCSTTCFNGGTCF 226
Query: 81 NFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C CPPG G+ C + +C PC C C C G+
Sbjct: 227 Y---PGKCICPPGLEGEQ----C-EISKCPQ-PCRNGGKCIG---KSKCKCSKGY 269
Score = 42.1 bits (99), Expect = 1e-05
Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 24/115 (20%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
++ C C C C PG G ++C+ + C G +C
Sbjct: 211 DKANCSTTCFNGGTCFY---PGKCICPPGLEG---------EQCEISKCPQPCRNGGKCI 258
Query: 81 NFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C+C GY GD + E CG C C C G+
Sbjct: 259 G---KSKCKCSKGYQGDLCSK---PVCEP---GCGAHGTCHE---PNKCQCQEGW 301
Score = 38.7 bits (90), Expect = 2e-04
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 20/96 (20%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
+I++C P C C C C GY G D C P CG
Sbjct: 243 EISKCPQP--CRNGGKCIG---KSKCKCSKGYQG---------DLCSKPVCEPGCGAHGT 288
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPC 114
C C+C G+HG + +
Sbjct: 289 CHE---PNKCQCQEGWHGRHCNK---RYEASLIGTK 318
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 43.2 bits (101), Expect = 6e-06
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 60 DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDAL 119
C A+ C A C ++ G+ C C Y G+ + + VN
Sbjct: 4 AQQTC--ANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIF 61
Query: 120 CSNVDGSYTCTC 131
+
Sbjct: 62 VGSSQVPVVFEN 73
Score = 42.8 bits (100), Expect = 8e-06
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 4/120 (3%)
Query: 18 VDINECAH-PNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPG 76
+ CA+ + C V+A C++Y + C C YTGN + C+ Q +
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIF 61
Query: 77 ARCTNFPGGYHCECPPGYHGDAFTTGCVDADEC--VNRPCGKDALCSNVDGSYTCTCPPG 134
+ P + Y +
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQD 121
Score = 34.0 bits (77), Expect = 0.010
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 104 VDADECVN--RPCGKDALCSNVDGSYTCTCPPGFR 136
+ C N C A C + + C C +
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYT 37
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 39.8 bits (93), Expect = 2e-05
Identities = 12/54 (22%), Positives = 14/54 (25%), Gaps = 6/54 (11%)
Query: 84 GGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNV--DGSYTCTCPPGF 135
+C C G V C C C + C CP GF
Sbjct: 30 RVEYCWCNSGRAQ----CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF 79
Score = 38.6 bits (90), Expect = 6e-05
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 9/65 (13%)
Query: 35 CQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTN--FPGGYHCECPP 92
C C G + + C S C G C + + C+CP
Sbjct: 25 VLRSNRVEYCWCNSGRAQC---HSVPVKSC---SEPR-CFNGGTCQQALYFSDFVCQCPE 77
Query: 93 GYHGD 97
G+ G
Sbjct: 78 GFAGK 82
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 37.8 bits (88), Expect = 4e-05
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 18 VDINECAHPNACGVNA-------LCQNYPGNYTCSCQPGYT 51
VD++ECA + G LC NY G Y CSC+PGY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
Score = 37.8 bits (88), Expect = 5e-05
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 59 IDIDECQYASTHPVCGPGA----RCTNFPGGYHCECPPGYH 95
+D+DEC S P C N+ GGY C C PGY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
Score = 32.8 bits (75), Expect = 0.004
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 104 VDADECVNRPCGKDA--------LCSNVDGSYTCTCPPGFR 136
VD DEC +R + LC N G Y C+C PG+
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 40.6 bits (94), Expect = 6e-05
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 18/90 (20%)
Query: 51 TGNPFEGCI---DIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDAD 107
PF+G I + PV + + P P C +
Sbjct: 146 EREPFKGWIRDVRVQSSLA---LPVDSGEVKLDDEPPNSGGGSP-----------CEAGE 191
Query: 108 ECVNRPCGKDALCSNVDGSYTCTCP-PGFR 136
E C +CS VD C C GFR
Sbjct: 192 EGEGGVCLNGGVCSVVDDQAVCDCSRTGFR 221
Score = 31.7 bits (71), Expect = 0.072
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 78 RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
+ + + G A C++ PC + +C + Y C C
Sbjct: 594 QSKDIRQMAEVQSTAGVKPS---CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTG 648
Score = 28.7 bits (63), Expect = 0.75
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 100 TTGCVDADE-CVNRPCGKDALCSNVDGSYTCTCPPGF 135
GC C C +C ++C C
Sbjct: 1010 ERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS 1046
Score = 27.9 bits (61), Expect = 1.2
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 1/55 (1%)
Query: 20 INECAHPNACGVNALCQNYPGNYTCSCQ-PGYTGNPFEGCIDIDECQYASTHPVC 73
E C +C C C G+ G + + + C
Sbjct: 189 AGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFC 243
Score = 27.5 bits (60), Expect = 1.6
Identities = 8/65 (12%), Positives = 11/65 (16%), Gaps = 4/65 (6%)
Query: 45 SCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCV 104
Q P C C C + Y C+C +
Sbjct: 603 EVQSTAGVKPSCSRETAKPC----LSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 658
Query: 105 DADEC 109
Sbjct: 659 TVLSY 663
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 38.9 bits (91), Expect = 1e-04
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 18/97 (18%)
Query: 41 NYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFT 100
C CQ G+ G C HP C C + C C + G
Sbjct: 82 PGDCRCQYGWQG---------LYCDKCIPHPGCV-HGICNE---PWQCLCETNWGGQLCD 128
Query: 101 TGCVDADECV-NRPCGKDALCSNVD-GSYTCTCPPGF 135
D + C ++PC CSN Y C+CP G+
Sbjct: 129 K---DLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
Score = 37.3 bits (87), Expect = 3e-04
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
++C P+ V+ +C + C C+ + G + D++ C TH C G C+
Sbjct: 97 DKCI-PHPGCVHGICNE---PWQCLCETNWGGQLCD--KDLNYC---GTHQPCLNGGTCS 147
Query: 81 N-FPGGYHCECPPGYHGD 97
N P Y C CP GY G
Sbjct: 148 NTGPDKYQCSCPEGYSGP 165
Score = 33.1 bits (76), Expect = 0.014
Identities = 15/110 (13%), Positives = 23/110 (20%), Gaps = 22/110 (20%)
Query: 26 PNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGG 85
+ + + G +C Y G C G +
Sbjct: 4 SHHHHHHGSIE---GRSAVTCDDYYYG---------FGCNKFCRPRDDFFGHYACD--QN 49
Query: 86 YHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
+ C G+ G C K C C C G+
Sbjct: 50 GNKTCMEGWMGPECNR-----AICRQGCSPKHGSCKL---PGDCRCQYGW 91
Score = 31.6 bits (72), Expect = 0.040
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 19 DINECAHPNACGVNALCQN-YPGNYTCSCQPGYTG 52
D+N C C C N P Y CSC GY+G
Sbjct: 130 DLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSG 164
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 39.1 bits (90), Expect = 1e-04
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 2/112 (1%)
Query: 20 INECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARC 79
+NECA C + C N G + C C+ GY P + +
Sbjct: 1 VNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 80 TNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTC 131
Y + A + L +N++GS
Sbjct: 59 LPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110
Score = 27.5 bits (60), Expect = 1.7
Identities = 14/61 (22%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 76 GARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
G H + N C LC +YTC CP GF
Sbjct: 276 GKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGC--THLCLPSGQNYTCACPTGF 333
Query: 136 R 136
R
Sbjct: 334 R 334
Score = 27.1 bits (59), Expect = 2.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 107 DECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
+EC C+N +G++ C C G+
Sbjct: 2 NECAEEG-YCSQGCTNSEGAFQCWCEAGYE 30
Score = 26.8 bits (58), Expect = 3.0
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 10 NISQFVVFVDINECAHPNACGVNA-----LCQNYPGNYTCSCQPGYT 51
+ A N CG N LC NYTC+C G+
Sbjct: 288 FPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR 334
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 35.5 bits (83), Expect = 2e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 18 VDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGN 53
VD ++C N C C++ +Y C C G+ G
Sbjct: 1 VDGDQCE-SNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 34.8 bits (81), Expect = 4e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 104 VDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
VD D+C + PC C + SY C CP GF
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGF 32
Score = 34.0 bits (79), Expect = 9e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 59 IDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGD 97
+D D+C ++P C G C + Y C CP G+ G
Sbjct: 1 VDGDQC---ESNP-CLNGGSCKDDINSYECWCPFGFEGK 35
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 37.9 bits (87), Expect = 4e-04
Identities = 21/117 (17%), Positives = 29/117 (24%), Gaps = 15/117 (12%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
DI +C TC C+ TG D +C+ PG+
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTG------PDCGKCKKNYQGRPWSPGS- 342
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
P G C P + C N + C CP +
Sbjct: 343 YLPIPKGAANACIPSISSIGTNVCDNELLHCQN--------GGTCHNNVRCLCPAAY 391
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/105 (16%), Positives = 22/105 (20%), Gaps = 21/105 (20%)
Query: 32 NALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECP 91
P +C P + C + C G C N C CP
Sbjct: 340 PGSYLPIPKGAANACIPSISSIGTNVCDNE--------LLHCQNGGTCHN---NVRCLCP 388
Query: 92 PGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
Y G C C + C + G
Sbjct: 389 AAYTG----------ILCEKLRCEEAGSCGSDSGQGAPPHGTHHH 423
Score = 30.2 bits (67), Expect = 0.17
Identities = 13/102 (12%), Positives = 16/102 (15%), Gaps = 7/102 (6%)
Query: 34 LCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPG 93
+ P + F DI C CEC
Sbjct: 264 IRLLRPAVGEIFVDELHLARYFYAISDIKVRGR---CKCNLHATVCVYDNSKLTCECEHN 320
Query: 94 YHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
G RP + C P
Sbjct: 321 TTGP---DCGKCKKNYQGRPW-SPGSYLPIPKGAANACIPSI 358
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 37.2 bits (86), Expect = 7e-04
Identities = 23/91 (25%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 48 PGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNF-PGGYHCECPPGYHGDAFTT----- 101
PG +P C S C A C G C C G+ G+
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSE-CHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTD 63
Query: 102 --GCVDA-DECVNRPCGKDALCSNVDGSYTC 129
G D C R C KD C V S
Sbjct: 64 LDGFPDEKLRCPERQCRKDN-CVTVPNSGQE 93
Score = 31.8 bits (72), Expect = 0.053
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 92 PGYHGDAFTTGCVDADEC---VNRPCGKDALCSNV-DGSYTCTCPPGF 135
PG C C + A C DGS +C C G+
Sbjct: 5 PGVPTSP-VWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGW 51
Score = 29.9 bits (67), Expect = 0.25
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 26 PNACGVNALCQN-YPGNYTCSCQPGYTGNPFEGCIDID 62
P+ C +A C G+ +C C G+ GN D D
Sbjct: 26 PSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTD 63
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 36.7 bits (85), Expect = 7e-04
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 11 ISQFVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYT 51
+ + V DINEC + C N+ G Y CSC P Y
Sbjct: 108 FAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYF 148
Score = 32.5 bits (74), Expect = 0.019
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 58 CIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYH 95
DI+EC P C C NF GGY C CPP Y
Sbjct: 114 ATDINECTDFVDVP-CSH--FCNNFIGGYFCSCPPEYF 148
Score = 29.4 bits (66), Expect = 0.22
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 96 GDAFTTGCVDADECVNRPCGK-DALCSNVDGSYTCTCPPGF 135
G A D +EC + C+N G Y C+CPP +
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEY 147
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 37.0 bits (85), Expect = 0.001
Identities = 22/113 (19%), Positives = 28/113 (24%), Gaps = 8/113 (7%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTG-NPFEGCIDIDECQYASTHPVCGPGARC 79
C+ C C P Y CSC G+ G E C C G C
Sbjct: 244 ERCSGQEGCKSYVFCL--PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC 301
Query: 80 TNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCP 132
C C PG+ G + + G + C
Sbjct: 302 DR---FQGCLCSPGWQGLQCEREGI--PRMTPKIVDLPDHIEVNSGKFNPICK 349
Score = 33.9 bits (77), Expect = 0.010
Identities = 27/118 (22%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 27 NACGVNALCQNYPGNYTCSCQPGYTG-----NPFEGCIDIDECQYASTHPVCGPGARCTN 81
AC N +C C C PG+ G + S C C
Sbjct: 203 TACMNNGVCH--EDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL- 259
Query: 82 FPGGYHCECPPGYHGD----AFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
P Y C C G+ G A G D + C +C C C PG+
Sbjct: 260 -PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF---QGCLCSPGW 313
Score = 30.4 bits (68), Expect = 0.14
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 12/100 (12%)
Query: 39 PGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTN--FPGGYHCECPPGYHG 96
G++ S + E + + Q A + G F C G
Sbjct: 136 NGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWG 195
Query: 97 DAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C C + +C + + C CPPGF
Sbjct: 196 PECNHLC--------TACMNNGVC--HEDTGECICPPGFM 225
Score = 29.7 bits (66), Expect = 0.28
Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 13/117 (11%)
Query: 19 DINECAHPNACGVNALCQN---YPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGP 75
+ + C + C N C C PG+ G E E T +
Sbjct: 279 ACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCE-----REGIPRMTPKIVDL 333
Query: 76 GARCTNFPGGYHCECP-PGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTC 131
G ++ C G+ + N ++
Sbjct: 334 PDHIEVNSGKFNPICKASGWPL----PTNEEMTLVKPDGTVLHPKDFNHTDHFSVAI 386
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.8 bits (82), Expect = 0.002
Identities = 22/104 (21%), Positives = 28/104 (26%), Gaps = 18/104 (17%)
Query: 43 TCSCQPGYTGN------PFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHG 96
C C PG+ G+ DEC PVC C C C G
Sbjct: 459 VCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHSSDFG 514
Query: 97 DAFTTGCVDADECVNRPCGKDALCSN----VDGSYTCTCPPGFR 136
C + + K +CS G C C +
Sbjct: 515 KITGKYC--ECDDFSCVRYKGEMCSGHGQCSCG--DCLCDSDWT 554
Score = 28.9 bits (64), Expect = 0.52
Identities = 23/130 (17%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 22 ECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTN 81
C + C C C +TG D C +S +C +C
Sbjct: 529 VRYKGEMCSGHGQCSCG----DCLCDSDWTGYYCNCTTRTDTCM-SSNGLLCSGRGKCEC 583
Query: 82 FPGGYHCECPPGYHGD------AFTTGCVDADECVNRPCGK----------DALCSNVDG 125
G PG +GD C ECV + C +
Sbjct: 584 ---GSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIE 640
Query: 126 SYTCTCPPGF 135
S G
Sbjct: 641 SVKELKDTGK 650
Score = 27.7 bits (61), Expect = 1.5
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 41 NYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFT 100
++ +C + C+ + S C P G+
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEA-KVRGCPQEKEKSFTIKPVGFKDSLIV 427
Query: 101 TGCVDAD-ECVNRPCGKDALCSNVDGSY---TCTCPPGF 135
D D C + C+N +G++ C C PG+
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGW 466
Score = 26.6 bits (58), Expect = 3.7
Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 20/99 (20%)
Query: 41 NYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFT 100
+ C C P + + CGPG G CEC + +
Sbjct: 430 TFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGW------LGSQCECSEEDYRPSQQ 483
Query: 101 TGCVDADECVNRPCGKDALCSN----VDGSYTCTCPPGF 135
C P +CS + G C C
Sbjct: 484 DEC--------SPREGQPVCSQRGECLCG--QCVCHSSD 512
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 35.8 bits (82), Expect = 0.002
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 53 NPFEGCIDIDECQYASTHPVCGPGARCTNF------PGGYHCECPPGYHGDAFTTGCVDA 106
+P + + Q +T+P C++ Y C CP G C D
Sbjct: 251 SPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
Query: 107 DECVN 111
+ +
Sbjct: 311 NSHHH 315
Score = 29.7 bits (66), Expect = 0.29
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 109 CVNRPCGKDALCSNVDGSYTCTCPPGFR 136
N C L S V Y C CP G +
Sbjct: 272 IDNGGCSHLCLMSPVKPFYQCACPTGVK 299
Score = 29.3 bits (65), Expect = 0.38
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 34 LCQNYPGN--YTCSCQPGYTGNPFE-GCIDIDECQY 66
LC P Y C+C G C D + +
Sbjct: 280 LCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHH 315
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 35.8 bits (82), Expect = 0.002
Identities = 20/117 (17%), Positives = 27/117 (23%), Gaps = 15/117 (12%)
Query: 19 DINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
D C N + C C PG+ G+ + + C C R
Sbjct: 515 DTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCL-NPRRVECSGRGR 573
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C CEC GY C P + + G
Sbjct: 574 CRC----NVCECHSGYQL----------PLCQECPGCPSPCGKYISCAECLKFEKGP 616
Score = 33.9 bits (77), Expect = 0.012
Identities = 22/123 (17%), Positives = 30/123 (24%), Gaps = 9/123 (7%)
Query: 22 ECAHPNACGVNALCQN--YPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARC 79
EC + +LC + C C GY G E Q +
Sbjct: 424 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSII 483
Query: 80 TNFPGGYH---CECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDG----SYTCTCP 132
+ G C C G + +N +C C C
Sbjct: 484 CSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCH 543
Query: 133 PGF 135
PGF
Sbjct: 544 PGF 546
Score = 33.5 bits (76), Expect = 0.014
Identities = 18/113 (15%), Positives = 26/113 (23%), Gaps = 22/113 (19%)
Query: 23 CAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNF 82
C C+ C C GY C + C CG C
Sbjct: 562 NPRRVECSGRGRCRCN----VCECHSGYQL---PLCQECPGC-----PSPCGKYISCAEC 609
Query: 83 PGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
+ G G + C ++ K C D + C +
Sbjct: 610 -----LKFEKGPFGKNCSAAC--PGLQLSNNPVKGRTCKERD---SEGCWVAY 652
Score = 33.1 bits (75), Expect = 0.019
Identities = 18/100 (18%), Positives = 24/100 (24%), Gaps = 13/100 (13%)
Query: 43 TCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYH----CECPPGYHGDA 98
C C I C+ + + G C G C C PG+ G A
Sbjct: 494 QCLCHTSDVPGK---LIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSA 550
Query: 99 --FTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C C C C G++
Sbjct: 551 CQCERTTEGCLNPRRVECSGRGRCR----CNVCECHSGYQ 586
Score = 26.6 bits (58), Expect = 3.4
Identities = 14/111 (12%), Positives = 20/111 (18%), Gaps = 7/111 (6%)
Query: 29 CGVNALCQNYPGNYTCSCQPGYTGNPFEG--CIDIDECQYASTHPVCGPGARCTNFPGGY 86
NAL Y C G T C + +
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQE---QS 403
Query: 87 HCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSN--VDGSYTCTCPPGF 135
G+ + +LC C C G+
Sbjct: 404 FVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGY 454
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 33.1 bits (76), Expect = 0.003
Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGK 116
C C C GY C+ PCGK
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY---PCGK 49
Score = 28.5 bits (64), Expect = 0.13
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 34 LCQNYPGNYTCSCQPGYT-GNPFEGCIDIDEC 64
C + CSC GYT + + CI
Sbjct: 14 FCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
Score = 25.4 bits (56), Expect = 2.2
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 119 LCSNVDGSYTCTCPPGFR 136
C S C+C G+
Sbjct: 14 FCHEEQNSVVCSCARGYT 31
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 34.5 bits (79), Expect = 0.004
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 14 FVVFVDINECAHPN--ACGVNALCQNYPGNYTCSCQPGYTGNP 54
F DI+EC A + C N+ G + CSC+ GY +
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHR 160
Score = 33.4 bits (76), Expect = 0.010
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 55 FEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDA 106
F DIDECQ A C N GG++C C GY C +
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDH-HCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168
Score = 29.5 bits (66), Expect = 0.24
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 94 YHGDAFTTGCVDADECVNRPC---GKDALCSNVDGSYTCTCPPGFR 136
+ G D DEC P D C N G + C+C G+
Sbjct: 112 FTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 34.0 bits (77), Expect = 0.011
Identities = 26/94 (27%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL-----CV 366
Query: 81 NFPGGYHCECPPGYHGDAFTTGCVDADECVNRPC 114
N GGY C+C G+ D T C
Sbjct: 367 NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400
Score = 31.0 bits (69), Expect = 0.11
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 35 CQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGY 94
+ + C+ E + + G C + GY C CP G+
Sbjct: 284 GECITLDKVCNMARDCRDWSDEPIKECGTNEC--LDNNGGCSHVCNDLKIGYECLCPDGF 341
Query: 95 HGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
A C D DEC + P LC N++G Y C C GF+
Sbjct: 342 QLVAQRR-CEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQ 381
Score = 27.5 bits (60), Expect = 1.9
Identities = 10/60 (16%), Positives = 15/60 (25%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCP 132
C P + + C CP G C+ E + V + T
Sbjct: 678 CLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQH 737
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 31.6 bits (72), Expect = 0.012
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGK 116
C C C GY + CV + PCGK
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF---PCGK 46
Score = 25.8 bits (57), Expect = 1.3
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 34 LCQNYPGNYTCSCQPGYT 51
C+ CSC GY
Sbjct: 11 FCREERSEVRCSCAHGYV 28
Score = 25.4 bits (56), Expect = 1.8
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 119 LCSNVDGSYTCTCPPGFR 136
C C+C G+
Sbjct: 11 FCREERSEVRCSCAHGYV 28
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 32.8 bits (75), Expect = 0.013
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 64 CQYASTHPV-CGPGARCTNFPGGYHCECPPGYHGD 97
C A+ C C Y C+C PG+ G
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.5 bits (69), Expect = 0.11
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 25 HPNACGVNALCQNYPGNYTCSCQPGYTG 52
+C + C NYTC C PG++G
Sbjct: 123 TNTSCSGHGECVETINNYTCKCDPGFSG 150
Score = 30.1 bits (68), Expect = 0.15
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 107 DECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C N C C +YTC C PGF
Sbjct: 120 AACTNTSCSGHGECVETINNYTCKCDPGF 148
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.9 bits (72), Expect = 0.018
Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 3/81 (3%)
Query: 18 VDINECAHPNACGVNALCQNY-PGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPG 76
+ NA C Y G C + + C+ + C P
Sbjct: 1 MSSEHRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDA-GKCVPAPNMTCKDKNGGCAPE 59
Query: 77 ARCT-NFPGGYHCECPPGYHG 96
A C N C+C
Sbjct: 60 AECKMNDKNEIVCKCTKEGSE 80
Score = 28.5 bits (63), Expect = 0.29
Identities = 14/67 (20%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 73 CGPGARCTNF-PGGYHCECPPGYHGDAFTTGCVDADECV--NRPCGKDALCSNVD-GSYT 128
A C + G C + DA C N C +A C D
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIV 71
Query: 129 CTCPPGF 135
C C
Sbjct: 72 CKCTKEG 78
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 31.7 bits (72), Expect = 0.039
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 64 CQYASTHP-VCGPGARCTNFPGGYHCECPPGYHGD 97
C AS P C C Y C C GY+G
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 30.2 bits (68), Expect = 0.13
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 25 HPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHP 71
P +C + C NYTC+C GY G +CQ+ P
Sbjct: 123 QPWSCSGHGECVEIINNYTCNCDVGYYG---------PQCQFVQVDP 160
Score = 27.1 bits (60), Expect = 1.8
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 109 CVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C C C + +YTC C G+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYY 149
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 30.8 bits (69), Expect = 0.051
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 29 CGVNALCQNY-PGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGG-Y 86
NA C Y G C G+ + C+ + C P A CT
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCE--ENNGGCAPEAECTMDDKKEV 75
Query: 87 HCECPPGYHG 96
C+C
Sbjct: 76 ECKCTKEGSE 85
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.9 bits (69), Expect = 0.12
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 35 CQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGY 94
+ + C+ E + + + G C + GY C CP G+
Sbjct: 266 GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNN--GGCSHVCNDLKIGYECLCPDGF 323
Query: 95 HGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
A C D DEC + P LC N++G Y C C GF
Sbjct: 324 QLVAQRR-CEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGF 362
Score = 30.2 bits (67), Expect = 0.20
Identities = 26/94 (27%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
N G + +C + Y C C G+ C DIDECQ T C
Sbjct: 294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL-----CV 348
Query: 81 NFPGGYHCECPPGYHGDAFTTGCVDADECVNRPC 114
N GGY C+C G+ D T C
Sbjct: 349 NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 382
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.6 bits (69), Expect = 0.12
Identities = 15/121 (12%), Positives = 25/121 (20%), Gaps = 8/121 (6%)
Query: 23 CAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVC----GPGAR 78
+ Q+ + C + + + + A +H C R
Sbjct: 268 RIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDF-LGEELDIVAAKSHEACQKLCTNAVR 326
Query: 79 CTNF---PGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C F P C G ++ R CT
Sbjct: 327 CQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKP 386
Query: 136 R 136
R
Sbjct: 387 R 387
Score = 28.3 bits (63), Expect = 0.90
Identities = 16/115 (13%), Positives = 26/115 (22%), Gaps = 13/115 (11%)
Query: 5 YSLIINISQFVVFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDEC 64
+SL VF + + G + C + C + C
Sbjct: 278 FSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQ----------KLCTNAVRC 327
Query: 65 Q---YASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGK 116
Q Y C G + HG +G ++ C
Sbjct: 328 QFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTT 382
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 30.1 bits (68), Expect = 0.12
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 64 CQYASTHP-VCGPGARCTNFPGGYHCECPPGYHGD 97
C AS C C G Y C C PG++G
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 151
Score = 29.8 bits (67), Expect = 0.17
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 24 AHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDE 63
+C C GNYTCSC PG+ G E D D+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
Score = 28.2 bits (63), Expect = 0.60
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 109 CVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C + C K C G+YTC+C PGF
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFY 149
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 30.4 bits (68), Expect = 0.13
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 5/64 (7%)
Query: 41 NYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFT 100
+ QP + CQY +C P + + C CP G
Sbjct: 257 LFHNLTQPRGVNWCERTTLSNGGCQY-----LCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 101 TGCV 104
C+
Sbjct: 312 RSCL 315
Score = 25.8 bits (56), Expect = 5.6
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 109 CVNRPCGKDALCSNVDGSYTCTCPPGFR 136
C+ P +TC CP G
Sbjct: 284 CLPAPQINPH-----SPKFTCACPDGML 306
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.4 bits (68), Expect = 0.19
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 102 GCV-DADECVNRPCGKDALCSNVDGSYTCTCPPG 134
GC + C C +C ++C C
Sbjct: 180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMT 213
Score = 29.6 bits (66), Expect = 0.28
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 73 CGPGARCTNFPGGYHCECPPGYHG 96
C C G+ C+C
Sbjct: 193 CSNQGVCLQQWDGFSCDCSMTSFS 216
Score = 26.1 bits (57), Expect = 4.5
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 25 HPNACGVNALCQNYPGNYTCSC-QPGYTG 52
++C +C ++C C ++G
Sbjct: 189 QEDSCSNQGVCLQQWDGFSCDCSMTSFSG 217
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 29.0 bits (64), Expect = 0.20
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 27 NACGVNALCQNY-PGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGG 85
C N+ C + C C Y + C++ + C A+CT G
Sbjct: 10 KQCPQNSGCFRHLDEREECKCLLNYKQEG-DKCVENPNPTCNENNGGCDADAKCTEEDSG 68
Query: 86 -----YHCECPPGYHG 96
CEC
Sbjct: 69 SNGKKITCECTKPDSY 84
Score = 26.7 bits (58), Expect = 1.5
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 73 CGPGARCT-NFPGGYHCECPPGYHGDAFTTGCVDADECV--NRPCGKDALCSNVDGS--- 126
C + C + C+C Y + C N C DA C+ D
Sbjct: 12 CPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNG 71
Query: 127 --YTCTCPPGF 135
TC C
Sbjct: 72 KKITCECTKPD 82
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.8 bits (66), Expect = 0.25
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 79 CTNFPGGYHCECPPGYHGDAFTTGCV 104
C P G C CP G+ + C+
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTCI 617
Score = 28.2 bits (62), Expect = 0.82
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 119 LCSNVDGSYTCTCPPGFR 136
LC C CP GF
Sbjct: 591 LCLYRPQGLRCACPIGFE 608
Score = 27.9 bits (61), Expect = 1.1
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 23 CAHPNACGVNALCQNYPGNYTCSCQPGYT 51
C + LC P C+C G+
Sbjct: 582 AEENGGC--SHLCLYRPQGLRCACPIGFE 608
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.4 bits (65), Expect = 0.38
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 11/125 (8%)
Query: 21 NECAHPNACGVNALCQNYPGNYTC--SCQPGYTGNPFEGCIDIDECQYASTHPVCGPGAR 78
C+ P+ C+N+ + C +C P Y C++ CQ
Sbjct: 214 GNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG 273
Query: 79 CTNF---PGGYHCECPPGYHGDAFTTGCV------DADECVNRPCGKDALCSNVDGSYTC 129
C + ECP GY ++ C + ++ C
Sbjct: 274 CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
Query: 130 TCPPG 134
T G
Sbjct: 334 TVING 338
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 28.1 bits (62), Expect = 0.79
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 8/110 (7%)
Query: 30 GVNALCQNYPGNYTC-SCQPGY---TGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGG 85
+ C + C C+ G + N C+ +C+ +
Sbjct: 28 YLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRD---- 83
Query: 86 YHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
C C + ++ C G L + CTC GF
Sbjct: 84 TVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGF 133
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 28.0 bits (61), Expect = 1.0
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 8/107 (7%)
Query: 23 CAHPNACGVNALCQNYPGNYTC--SCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCT 80
P C C+N+ + C +C P Y C++ CQ C
Sbjct: 219 PDDPTKCVA---CRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCH 275
Query: 81 NF-PGGYHC--ECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVD 124
+ C ECP GY ++ C + C +D
Sbjct: 276 QYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTID 322
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/121 (9%), Positives = 16/121 (13%), Gaps = 16/121 (13%)
Query: 16 VFVDINECAHPNACGVNALCQNYPGNYTCSCQPGYTGNPFEGC--IDIDECQYASTHPVC 73
F + N C + Y + C +E
Sbjct: 52 DFNSAVQLVE-NFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSD 110
Query: 74 GPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPP 133
T P + CG L
Sbjct: 111 RAIEGATATSEYQTFFNPATF-------------GSGEADCGLRPLFEKKSLEDKTEREL 157
Query: 134 G 134
Sbjct: 158 L 158
Score = 27.1 bits (60), Expect = 2.1
Identities = 6/41 (14%), Positives = 8/41 (19%)
Query: 95 HGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
+ A + V C Y P F
Sbjct: 45 KALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDF 85
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 27.6 bits (60), Expect = 1.4
Identities = 9/69 (13%), Positives = 12/69 (17%)
Query: 68 STHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSY 127
S G C C ++ + C SY
Sbjct: 32 SLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSY 91
Query: 128 TCTCPPGFR 136
C F
Sbjct: 92 ECLTSCEFL 100
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 27.7 bits (61), Expect = 1.5
Identities = 15/104 (14%), Positives = 24/104 (23%), Gaps = 5/104 (4%)
Query: 35 CQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCE-CPPG 93
C+P I + + + RC G C+ C G
Sbjct: 367 HPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEG 426
Query: 94 YHGDAFT--TGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
++ + GC C + G C C
Sbjct: 427 FYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGY--CYCKRLV 468
Score = 26.6 bits (58), Expect = 3.0
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 12/108 (11%)
Query: 37 NYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGA--------RCTNFPGGYHC 88
+ G C+ G+ E C + G C G C
Sbjct: 414 HVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRC 473
Query: 89 E-CPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGF 135
+ C P + G + +C + + CS G C+C P
Sbjct: 474 DQCLPQHWGLSNDLDGCRPCDC-DLGGALNNSCSEDSG--QCSCLPHM 518
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 27.0 bits (59), Expect = 1.8
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 2/51 (3%)
Query: 88 CECPPGYHGDAFTTGCVDADE--CVNRPCGKDALCSNVDGSYTCTCPPGFR 136
P G + G D V+ +Y P GF+
Sbjct: 79 GTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGFK 129
Score = 25.0 bits (54), Expect = 8.9
Identities = 20/127 (15%), Positives = 32/127 (25%), Gaps = 30/127 (23%)
Query: 36 QNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYH 95
+N G + QPG G G D + + G + Y+ E P G+
Sbjct: 74 ENQWGGTSAPWQPG--GVWVLGARD--KQNIVAVSIKSNDGGKTLTGTTTYNGEGPIGFK 129
Query: 96 G-----DAFTTG---------------------CVDADECVNRPCGKDALCSNVDGSYTC 129
D ++ V+ + +Y
Sbjct: 130 SEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGTMTYNG 189
Query: 130 TCPPGFR 136
P GFR
Sbjct: 190 EGPIGFR 196
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 27.0 bits (60), Expect = 2.0
Identities = 13/67 (19%), Positives = 16/67 (23%), Gaps = 1/67 (1%)
Query: 68 STHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSY 127
P P E P D F G D R C+ +
Sbjct: 367 PYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAA-GRLF 425
Query: 128 TCTCPPG 134
+CP G
Sbjct: 426 QQSCPTG 432
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 27.1 bits (59), Expect = 2.1
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 75 PGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPG 134
P +C G E F C+ P + +G+ +C C G
Sbjct: 261 PIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL---PSPEGATSCECEEG 317
Query: 135 F 135
F
Sbjct: 318 F 318
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 27.1 bits (60), Expect = 2.1
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 61 IDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRP------- 113
I+E Y + + CEC P + ++C+NR
Sbjct: 43 IEENVYLTERKKN----KSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSS 98
Query: 114 -CGKDALCSN 122
C CSN
Sbjct: 99 RCPNGDYCSN 108
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 26.3 bits (58), Expect = 3.1
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 36 QNYPGNYTCSCQPGYTGNPFEGCIDIDECQ------------YASTHPVCGPGARCTNFP 83
G C GY G+P + C+ + + + G +C
Sbjct: 25 TGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNT 84
Query: 84 GGYHCE-CPPGYHGDAFTTGCVDA 106
G++C+ C G+ G+ D
Sbjct: 85 AGFYCDRCKEGFFGNPLAPNPADK 108
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 26.2 bits (58), Expect = 3.2
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 21 NECAHPNACGVNALCQNYPGNYTCSCQPGYT-GNPFEGCIDIDECQYASTHPVCGPGARC 79
NEC G C +YTCSC GY G + C+ D+C
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC-ACGVLTSEKRAPDL 61
Query: 80 TNFP 83
+ P
Sbjct: 62 QDLP 65
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain,
structural genomics, PSI, protein structure initiative;
2.20A {Mus musculus} SCOP: d.129.3.2
Length = 224
Score = 26.3 bits (57), Expect = 4.0
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 64 CQYASTHPVCGPGA-RCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRP 113
C + P R N P G+ C + TG + D P
Sbjct: 148 CGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIP 198
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 26.2 bits (56), Expect = 4.2
Identities = 12/75 (16%), Positives = 17/75 (22%), Gaps = 5/75 (6%)
Query: 26 PNACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGG 85
P+ C + C + C C GYT + GG
Sbjct: 195 PSYCSGHGDCISG----VCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGG 250
Query: 86 YHCE-CPPGYHGDAF 99
C G +
Sbjct: 251 QVGTGCGTLNDGRSL 265
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 25.9 bits (56), Expect = 4.6
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 87 HCECPPGYHGDAFTTGCVDADECVNRPCGKD 117
HC+ G C D CV K
Sbjct: 5 HCDGRGGLKLSQDMDTCEDILPCVPFSVAKS 35
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S]
ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter
sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Length = 141
Score = 25.2 bits (55), Expect = 5.5
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 68 STHPVCGPGARCTNFPGGYHCECPPGYHGDAFTT 101
TH C P + GG+ C C HG + +
Sbjct: 83 CTHLGCVPIGGVSGDFGGWFCPC----HGSHWDS 112
>4f88_1 Plyca; lysin, bacteriophage, antimicrobial protein, viral protein;
3.30A {Streptococcus phage C1}
Length = 465
Score = 25.7 bits (55), Expect = 5.6
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 28 ACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDI 61
A NY N + Y GNP++ ID
Sbjct: 158 AGNAWVWAYNYCVNNQGAAPLVYFGNPYDSQIDS 191
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 25.7 bits (56), Expect = 6.2
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 98 AFTTGCVDADECVNRPCGKDALCSNVDGSYTCTCPPGFR 136
A C + V+ +C G++
Sbjct: 277 AAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYK 315
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted
catalysis, hydrolase; 1.69A {Homo sapiens} SCOP:
g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 24.0 bits (52), Expect = 8.6
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 18 VDINECAHPNACGVNALCQNYPGN-YTCSCQPGYT 51
D C + N G C ++ G +C C GY+
Sbjct: 3 DDQLICVNEN-GGCEQYCSDHTGTKRSCRCHEGYS 36
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 24.9 bits (53), Expect = 8.9
Identities = 17/70 (24%), Positives = 19/70 (27%), Gaps = 10/70 (14%)
Query: 28 ACGVNALCQNYPGNYTCSCQPGYTGNPFEGCIDIDECQYASTHPVCGPGARCTNFPGGYH 87
A + T P I CQ A C G C
Sbjct: 117 AAFEVDVIVMNSEGNTILXTPQ-------NAIFFKTCQQAECPGGCRNGGFCNERR---I 166
Query: 88 CECPPGYHGD 97
CECP G+HG
Sbjct: 167 CECPDGFHGP 176
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 25.3 bits (55), Expect = 8.9
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 58 CIDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGC 103
+D+DEC C N+ GGY+C C GY C
Sbjct: 118 AVDVDEC-KEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8
TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM
helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter
sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E*
2yiu_C*
Length = 187
Score = 25.1 bits (54), Expect = 9.0
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 68 STHPVCGPGARCTNFPGGYHCECPPGYHGDAFTT 101
TH C P + GG+ C C HG + +
Sbjct: 129 CTHLGCSPIGGVSGDFGGWFCPC----HGSHYDS 158
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 25.2 bits (54), Expect = 9.9
Identities = 10/84 (11%), Positives = 19/84 (22%), Gaps = 6/84 (7%)
Query: 59 IDIDECQYASTHPVCGPGARCTNFPGGYHCECPPGYHGDAFTTGCVDADECVNRPCG-KD 117
+ + T R G + + C +
Sbjct: 213 LTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSN 272
Query: 118 ALCSNV-----DGSYTCTCPPGFR 136
CS++ G + C CP +
Sbjct: 273 GHCSHLCLAVPVGGFVCGCPAHYS 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.520
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,300,196
Number of extensions: 136003
Number of successful extensions: 1253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 504
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)