BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2857
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
D+DEC PC C NT+ F C C +GY+G CE +DV +EC SN C
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP-----RCE-IDV-NECVSN-PCQ 54
Query: 117 NNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEG 171
N+A C+D + C C PG++ G C V+ DEC PC +C + F+C+C G
Sbjct: 55 NDATCLDQIGEFQCICMPGYE--GVHCEVNTDEC-ASSPCLHNGRCLDKINEFQCECPTG 111
Query: 172 YVG 174
+ G
Sbjct: 112 FTG 114
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 12 GVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL 71
G R +D+NEC SNPC +ATC+D G + C+C Y G + + DEC + PC
Sbjct: 38 GPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV--NTDECAS--SPCLH 93
Query: 72 RAICENTVPGFNCLCPKGYSGK 93
C + + F C CP G++G
Sbjct: 94 NGRCLDKINEFQCECPTGFTGH 115
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 18/124 (14%)
Query: 18 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 75
D++EC +NPC CI+T GS+ C C + YTG + D++EC + PC A C
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI--DVNEC--VSNPCQNDATC 59
Query: 76 ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPG 131
+ + F C+C GY G V CE T EC+S+ C++N C+D + C C G
Sbjct: 60 LDQIGEFQCICMPGYEG-----VHCEV--NTDECASS-PCLHNGRCLDKINEFQCECPTG 111
Query: 132 FDAR 135
F
Sbjct: 112 FTGH 115
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 239 RVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
+D+NEC SNPC +ATC+D G + C+C Y G + + DEC + PC C
Sbjct: 42 EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV--NTDECAS--SPCLHNGRC 97
Query: 299 ENTVPGFNCLCPKGYSGK 316
+ + F C CP G++G
Sbjct: 98 LDKINEFQCECPTGFTGH 115
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 241 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
D++EC +NPC CI+T GS+ C C + YTG + D++EC + PC A C
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI--DVNEC--VSNPCQNDATC 59
Query: 299 ENTVPGFNCLCPKGYSG 315
+ + F C+C GY G
Sbjct: 60 LDQIGEFQCICMPGYEG 76
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSG 315
D+DEC PC C NT+ F C C +GY+G
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG 38
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 12 GVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL 71
G R +D+NEC SNPC +ATC+D G + C+C Y G + + DEC + PC
Sbjct: 36 GPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV--NTDECAS--SPCLH 91
Query: 72 RAICENTVPGFNCLCPKGYSGK 93
C + + F C CP G++G
Sbjct: 92 NGRCLDKINEFQCECPTGFTGH 113
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
D+DEC PC C NT+ F C C +GY+G CE +DV +EC SN C
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP-----RCE-IDV-NECVSN-PCQ 52
Query: 117 NNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEG 171
N+A C+D + C C PG++ G C V+ DEC PC +C + F+C+C G
Sbjct: 53 NDATCLDQIGEFQCICMPGYE--GVHCEVNTDEC-ASSPCLHNGRCLDKINEFQCECPTG 109
Query: 172 YVG 174
+ G
Sbjct: 110 FTG 112
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 239 RVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
+D+NEC SNPC +ATC+D G + C+C Y G + + DEC + PC C
Sbjct: 40 EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV--NTDECAS--SPCLHNGRC 95
Query: 299 ENTVPGFNCLCPKGYSGK 316
+ + F C CP G++G
Sbjct: 96 LDKINEFQCECPTGFTGH 113
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 18/124 (14%)
Query: 18 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 75
D++EC +NPC CI+T GS+ C C + YTG + D++EC + PC A C
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI--DVNEC--VSNPCQNDATC 57
Query: 76 ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPG 131
+ + F C+C GY G V CE T EC+S+ C++N C+D + C C G
Sbjct: 58 LDQIGEFQCICMPGYEG-----VHCEV--NTDECASS-PCLHNGRCLDKINEFQCECPTG 109
Query: 132 FDAR 135
F
Sbjct: 110 FTGH 113
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 241 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
D++EC +NPC CI+T GS+ C C + YTG + D++EC + PC A C
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEI--DVNEC--VSNPCQNDATC 57
Query: 299 ENTVPGFNCLCPKGYSG 315
+ + F C+C GY G
Sbjct: 58 LDQIGEFQCICMPGYEG 74
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 9 ILLGVRAIVDINECQS---NPCGVNATCIDTQGSYSCVCKEHY---------TGDPYQAC 56
I + DINEC + CG + C +T+GSY CVC Y + C
Sbjct: 34 ITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC 93
Query: 57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE 108
D+DEC + C +C NTV ++C C G+ KP + Q D E
Sbjct: 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW--KPRHGIPNNQKDTVCE 143
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 241 DINECQS---NPCGVNATCIDTQGSYSCVCKEHY---------TGDPYQACSDIDECKAL 288
DINEC + CG + C +T+GSY CVC Y + C D+DEC +
Sbjct: 43 DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 289 DKPCGLRAICENTVPGFNCLCPKGY 313
C +C NTV ++C C G+
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 52 PYQACSDIDECKALDK-PCGLRAICENTVPGFNCLCPKGY---SG----KPDAKVACEQV 103
P + C DI+EC L K CG + C NT ++C+C GY SG K +++ C+ V
Sbjct: 37 PMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDV 96
Query: 104 DVTSECSS-NFECVNNAECVDGL----CYCRPGFDARGSV 138
D ECSS +C ++ C + + C CRPG+ R +
Sbjct: 97 D---ECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 275 PYQACSDIDECKALDK-PCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
P + C DI+EC L K CG + C NT ++C+C GY AK
Sbjct: 37 PMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKT 84
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 115 CVNNAECVDGL-CYCRPGFDARGSV-------CVDVDECQLGD--PCGPQAQCTNTPGSF 164
C ++ CV+ C C PGF + + C D++EC CG + C NT GS+
Sbjct: 9 CPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSY 68
Query: 165 RCDCVEGY 172
C C GY
Sbjct: 69 DCVCSPGY 76
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 32/163 (19%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQA-CSDIDECKALDKPCGLRAIC 75
DI+EC+S+PC +N C ++ GS+ C C T DP + C + ++ C
Sbjct: 2 ADIDECESSPC-INGVCKNSPGSFICECSSESTLDPTKTICIET-----------IKGTC 49
Query: 76 ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLC----YCRPG 131
TV C ++ + S+C S+ + C LC C G
Sbjct: 50 WQTVIDGRC------------EININGATLKSQCCSSLGAAWGSPCT--LCQVDPICGKG 95
Query: 132 FD-ARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYV 173
+ +G+ C D+DEC++ C NT GSF+C C G
Sbjct: 96 YSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMT 138
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 38/156 (24%)
Query: 140 VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC------------KDVRWE 187
D+DEC+ PC C N+PGSF C+C P + C D R E
Sbjct: 2 ADIDECE-SSPC-INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 188 FNVTLLFYETDYLHSVASDISDILTIIH-------EFSRIFSKHLKLFVIEDAKRNLNRV 240
N+ ++ S+ + T+ +SRI +
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE-------------- 105
Query: 241 DINECQSNPCGV--NATCIDTQGSYSCVCKEHYTGD 274
DI+EC+ P GV N C++T+GS+ C C T D
Sbjct: 106 DIDECEVFP-GVCKNGLCVNTRGSFKCQCPSGMTLD 140
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQA 278
DI+EC+S+PC +N C ++ GS+ C C T DP +
Sbjct: 2 ADIDECESSPC-INGVCKNSPGSFICECSSESTLDPTKT 39
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 15 AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
+ VD++EC+ + CI+T GSY C C Y C D DEC ++ PCG
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYI-LAGNECVDTDEC-SVGNPCG-NGT 57
Query: 75 CENTVPGFNCLCPKGYSGKPDAKVACE 101
C+N + GF C C +G+ +P + CE
Sbjct: 58 CKNVIGGFECTCEEGF--EPGPMMTCE 82
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
VD++EC+ + CI+T GSY C C Y C D DEC ++ PCG C+
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYI-LAGNECVDTDEC-SVGNPCG-NGTCK 59
Query: 300 NTVPGFNCLCPKGYSGKPDAKVACE 324
N + GF C C +G+ +P + CE
Sbjct: 60 NVIGGFECTCEEGF--EPGPMMTCE 82
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 126 CYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
C C G+ G+ CVD DEC +G+PCG C N G F C C EG+ P
Sbjct: 28 CECPFGYILAGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGP 77
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 10 LLGVRAIVDINECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC 56
+L VD +EC NPCG N TC + G + C C+E + P C
Sbjct: 35 ILAGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTC 81
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 22 CQSNPCGVNATCID-TQGSYSC-VCKEHYTGDPYQACSDIDECKALDKPCGLRAI---CE 76
C SNPC A C GS+SC C + G+ C D+DEC + C + C
Sbjct: 3 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKVPRCV 61
Query: 77 NTVPGFNCL-CPKGYSGKPDAKVACEQV--------------DVTSECSSNFECVNNAEC 121
NT PGF+CL CP Y G V E D T C + EC+
Sbjct: 62 NTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHF 121
Query: 122 VDGL--CYCRPGFDARGSVC 139
D + C C+ G+ G +C
Sbjct: 122 SDPMYKCECQTGYAGDGLIC 141
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 245 CQSNPCGVNATCID-TQGSYSC-VCKEHYTGDPYQACSDIDECKALDKPCGLRAI---CE 299
C SNPC A C GS+SC C + G+ C D+DEC + C + C
Sbjct: 3 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKVPRCV 61
Query: 300 NTVPGFNCL-CPKGYSGKPDAKVACEQEKA 328
NT PGF+CL CP Y G V E K
Sbjct: 62 NTQPGFHCLPCPPRYRGNQPVGVGLEAAKT 91
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 97
Query: 80 PGFNCLCPKGYSGKPDAKVACEQV 103
G+ C C +G+ P K AC+ V
Sbjct: 98 GGYKCQCEEGFQLDPHTK-ACKAV 120
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 97
Query: 303 PGFNCLCPKGYSGKPDAK 320
G+ C C +G+ P K
Sbjct: 98 GGYKCQCEEGFQLDPHTK 115
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 40/173 (23%)
Query: 61 ECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV-NNA 119
EC LDK C + C + +S +P EC +N EC+ NN
Sbjct: 13 ECITLDKVCNMARDC------------RDWSDEP-----------IKECGTN-ECLDNNG 48
Query: 120 EC--------VDGLCYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVE 170
C + C C GF C D+DECQ D C C N G ++C C E
Sbjct: 49 GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEE 106
Query: 171 GYVGAPPRIKCKDVRWEFNVTLLFYETDY-LHSVASDISDILTIIHEFSRIFS 222
G+ P CK V ++ LF+ + + + D S+ ++I + +
Sbjct: 107 GFQLDPHTKACKAVG---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 156
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 11 LGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 70
L + + NEC N G + C D + Y C+C + + + C DIDEC+ D
Sbjct: 21 LYFQGAMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT--- 77
Query: 71 LRAICENTVPGFNCLCPKGYSGKPDAKV 98
+C N G+ C C +G+ P K
Sbjct: 78 CSQLCVNLEGGYKCQCEEGFQLDPHTKA 105
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
+ NEC N G + C D + Y C+C + + + C DIDEC+ D +C
Sbjct: 27 MGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 83
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
N G+ C C +G+ P K
Sbjct: 84 NLEGGYKCQCEEGFQLDPHTKA 105
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
C C GF C D+DECQ D C C N G ++C C EG+ P CK
Sbjct: 52 CLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACK 107
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 57
Query: 80 PGFNCLCPKGYSGKPDAKVACEQV 103
G+ C C +G+ P K AC+ V
Sbjct: 58 GGYKCQCEEGFQLDPHTK-ACKAV 80
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 57
Query: 303 PGFNCLCPKGYSGKPDAK 320
G+ C C +G+ P K
Sbjct: 58 GGYKCQCEEGFQLDPHTK 75
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C C GF C D+DECQ D C C N G ++C C EG+ P CK V
Sbjct: 23 CLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 80
Query: 185 RWEFNVTLLFYETDY-LHSVASDISDILTIIHEFSRIFS 222
++ LF+ + + + D S+ ++I + +
Sbjct: 81 G---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 351
Query: 80 PGFNCLCPKGYSGKPDAKVACEQV 103
G+ C C +G+ P K AC+ V
Sbjct: 352 GGYKCQCEEGFQLDPHTK-ACKAV 374
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 351
Query: 303 PGFNCLCPKGYSGKPDAKV 321
G+ C C +G+ P K
Sbjct: 352 GGYKCQCEEGFQLDPHTKA 370
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C C GF C D+DECQ D C C N G ++C C EG+ P CK V
Sbjct: 317 CLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAV 374
Query: 185 RWEFNVTLLFYETDY-LHSVASDISDILTIIHEFSRIFS 222
++ LF+ + + + D S+ ++I + +
Sbjct: 375 G---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 410
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 11 LGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 70
L + + NEC N G + C D + Y C+C + + + C DIDEC+ D
Sbjct: 21 LYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT--- 77
Query: 71 LRAICENTVPGFNCLCPKGYSGKPDAKV 98
+C N G+ C C +G+ P K
Sbjct: 78 CSQLCVNLEGGYKCQCEEGFQLDPHTKA 105
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
+ NEC N G + C D + Y C+C + + + C DIDEC+ D +C
Sbjct: 27 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 83
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
N G+ C C +G+ P K
Sbjct: 84 NLEGGYKCQCEEGFQLDPHTKA 105
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
C C GF C D+DECQ D C C N G ++C C EG+ P CK
Sbjct: 52 CLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACK 107
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 369
Query: 80 PGFNCLCPKGYSGKPDAKVACEQV 103
G+ C C +G+ P K AC+ V
Sbjct: 370 GGYKCQCEEGFQLDPHTK-ACKAV 392
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
NEC N G + C D + Y C+C + + + C DIDEC+ P +C N
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 369
Query: 303 PGFNCLCPKGYSGKPDAKV 321
G+ C C +G+ P K
Sbjct: 370 GGYKCQCEEGFQLDPHTKA 388
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C C GF C D+DECQ D C C N G ++C C EG+ P CK V
Sbjct: 335 CLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 392
Query: 185 RWEFNVTLLFYETDY-LHSVASDISDILTIIHEFSRIFS 222
++ LF+ + + + D S+ ++I + +
Sbjct: 393 G---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 428
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 17 VDINECQSNPCGVNATCID-TQGSYSC-VCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
D + C SNPC A C GS+SC C + G+ C D+DEC + C +
Sbjct: 1 ADPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSK 59
Query: 75 ---CENTVPGFNCL-CPKGYSGKPDAKVACEQV--------------DVTSECSSNFECV 116
C NT PGF+CL CP Y G V E D T C + EC+
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECI 119
Query: 117 NNAECVDGL--CYCRPGFDARGSVC 139
D C C+ G+ G +C
Sbjct: 120 YLGHFSDPXYKCECQTGYAGDGLIC 144
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 240 VDINECQSNPCGVNATCID-TQGSYSC-VCKEHYTGDPYQACSDIDECKALDKPCGLRAI 297
D + C SNPC A C GS+SC C + G+ C D+DEC + C +
Sbjct: 1 ADPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSK 59
Query: 298 ---CENTVPGFNCL-CPKGYSGKPDAKVACEQEKA 328
C NT PGF+CL CP Y G V E K
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKT 94
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC+ D +C N
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNLE 59
Query: 80 PGFNCLCPKGYSGKPDAKVACEQV 103
G+ C C +G+ P K AC+ V
Sbjct: 60 GGYKCQCEEGFQLDPHTK-ACKAV 82
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
NEC N G + C D + Y C+C + + + C DIDEC+ D +C N
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNLE 59
Query: 303 PGFNCLCPKGYSGKPDAKV 321
G+ C C +G+ P K
Sbjct: 60 GGYKCQCEEGFQLDPHTKA 78
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C C GF C D+DECQ D C C N G ++C C EG+ P CK V
Sbjct: 25 CLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAV 82
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 15 AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
+ NEC N G + C D + Y C+C + + + C DIDEC+ D +
Sbjct: 1 GAMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQL 57
Query: 75 CENTVPGFNCLCPKGYSGKPDAKV 98
C N G+ C C +G+ P K
Sbjct: 58 CVNLEGGYKCQCEEGFQLDPHTKA 81
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
+ NEC N G + C D + Y C+C + + + C DIDEC+ D +C
Sbjct: 3 MGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 59
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
N G+ C C +G+ P K
Sbjct: 60 NLEGGYKCQCEEGFQLDPHTKA 81
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
C C GF C D+DECQ D C C N G ++C C EG+ P CK
Sbjct: 28 CLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 18 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD--PYQACSDIDECKALDKPCGLRA 73
DI+EC+ +P CG C++T G + C C E Y + C DIDEC+ C
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLC-RGG 59
Query: 74 ICENTVPGFNCLCPKGYSGKPD 95
+C NT + C CP G+ P+
Sbjct: 60 VCHNTEGSYRCECPPGHQLSPN 81
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 241 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD--PYQACSDIDECKALDKPCGLRA 296
DI+EC+ +P CG C++T G + C C E Y + C DIDEC+ C
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLC-RGG 59
Query: 297 ICENTVPGFNCLCPKGYSGKPD 318
+C NT + C CP G+ P+
Sbjct: 60 VCHNTEGSYRCECPPGHQLSPN 81
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 141 DVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIK-CKDV 184
D+DEC++ D CG + QC NTPG F C C EGY +K C D+
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDI 46
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 40/119 (33%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVN 117
DIDEC+ CG R C NT F C C +GY S F +
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYE-------------------SGFMMMK 41
Query: 118 NAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
N C+D+DECQ C NT GS+RC+C G+ +P
Sbjct: 42 N--------------------CMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding
Epidermal Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
NEC N G + C D + Y C+C + + + C DIDEC+ D +C N
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNL 58
Query: 79 VPGFNCLCPKGYSGKPDAKV 98
G+ C C +G+ P K
Sbjct: 59 EGGYKCQCEEGFQLDPHTKA 78
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 301
NEC N G + C D + Y C+C + + + C DIDEC+ D +C N
Sbjct: 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNL 58
Query: 302 VPGFNCLCPKGYSGKPDAKV 321
G+ C C +G+ P K
Sbjct: 59 EGGYKCQCEEGFQLDPHTKA 78
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
C C GF C D+DECQ D C C N G ++C C EG+ P CK
Sbjct: 25 CLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACK 80
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 15 AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
+ NEC N G + C D + Y C+C + + + C DIDEC+ D +
Sbjct: 1 GAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQL 57
Query: 75 CENTVPGFNCLCPKGYSGKPDAKV 98
C N G+ C C +G+ P K
Sbjct: 58 CVNLEGGYKCQCEEGFQLDPHTKA 81
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
+ NEC N G + C D + Y C+C + + + C DIDEC+ D +C
Sbjct: 3 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 59
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
N G+ C C +G+ P K
Sbjct: 60 NLEGGYKCQCEEGFQLDPHTKA 81
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 126 CYCRPGFDARGSV-CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
C C GF C D+DECQ D C C N G ++C C EG+ P CK
Sbjct: 28 CLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D+NEC SNPC +ATC+D G + C+C Y G
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEG 33
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D+NEC SNPC +ATC+D G + C+C Y G
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEG 33
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
DV+EC + +PC A C + G F+C C+ GY G
Sbjct: 1 DVNEC-ISNPCQNDATCLDQIGEFQCICMPGYEGV 34
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 66/183 (36%), Gaps = 24/183 (13%)
Query: 140 VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDY 199
DV+EC C C NTPGS+ CDC + P R+ C D R + D
Sbjct: 1 TDVNECLDPTTC-ISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 200 LHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDT 259
+ S+ +I + + S S + + PC + +
Sbjct: 60 GDTACSN--EIGVGVSKASCCCS-------------------LGKAWGTPCEMCPAVNTS 98
Query: 260 QGSYSCVCKEHYTGDPYQA-CSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD 318
+ C E + +P DIDEC+ L C C NT F C CP GY D
Sbjct: 99 EYKILCPGGEGFRPNPITVILEDIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLNED 157
Query: 319 AKV 321
+V
Sbjct: 158 TRV 160
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 59/163 (36%), Gaps = 18/163 (11%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDI--DECKALDKPCGLRA 73
D+NEC ++ C++T GSY C C + +P + C D C +P G
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 74 --ICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPG 131
C N + G A C VN +E LC G
Sbjct: 61 DTACSNEI----------GVGVSKASCCCSLGKAWGTPCEMCPAVNTSE-YKILCPGGEG 109
Query: 132 FDARGSVCV--DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGY 172
F + D+DECQ +C NT GSF+C C GY
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
DIDEC+ L C C NT F C CP GY D +V
Sbjct: 121 DIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLNEDTRV 160
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 126 CYCRPGFDAR--GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
C C G+ G C DV+EC C CTN+ G+F+C C GY P R CK
Sbjct: 26 CTCHTGYRLTEDGRTCQDVNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCK 82
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYT-GDPYQACSDIDECKALDKPCGLRAICENTVP 80
C N G C +G+ C C Y + + C D++EC A + C C N+
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCS--QGCTNSEG 62
Query: 81 GFNCLCPKGYSGKPDAK 97
F C C GY +PD +
Sbjct: 63 AFQCWCEAGYELRPDRR 79
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYT-GDPYQACSDIDECKALDKPCGLRAICENTVP 303
C N G C +G+ C C Y + + C D++EC A + C C N+
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCS--QGCTNSEG 62
Query: 304 GFNCLCPKGYSGKPDAK 320
F C C GY +PD +
Sbjct: 63 AFQCWCEAGYELRPDRR 79
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 65/183 (35%), Gaps = 24/183 (13%)
Query: 140 VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDY 199
DV+EC C C NTPGS+ CDC + P R+ C D R + D
Sbjct: 1 TDVNECLDPTTC-ISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 200 LHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDT 259
+ S+ +I + + S S + + PC +
Sbjct: 60 GDTACSN--EIGVGVSKASCCCS-------------------LGKAWGTPCEXCPAVNTS 98
Query: 260 QGSYSCVCKEHYTGDPYQA-CSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD 318
+ C E + +P DIDEC+ L C C NT F C CP GY D
Sbjct: 99 EYKILCPGGEGFRPNPITVILEDIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLNED 157
Query: 319 AKV 321
+V
Sbjct: 158 TRV 160
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 59/163 (36%), Gaps = 18/163 (11%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDI--DECKALDKPCGLRA 73
D+NEC ++ C++T GSY C C + +P + C D C +P G
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 74 --ICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPG 131
C N + G A C VN +E LC G
Sbjct: 61 DTACSNEI----------GVGVSKASCCCSLGKAWGTPCEXCPAVNTSE-YKILCPGGEG 109
Query: 132 FDARGSVCV--DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGY 172
F + D+DECQ +C NT GSF+C C GY
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
DIDEC+ L C C NT F C CP GY D +V
Sbjct: 121 DIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLNEDTRV 160
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
DVDEC L A C N PG F C+C EGY C+D+
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDI 45
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNF 113
D+DEC CG A+C+N F C CP+GY +K +CE +D ECS N
Sbjct: 2 DVDECSLKPSICGT-AVCKNIPGDFECECPEGYRYNLKSK-SCEDID---ECSENM 52
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 18 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAI 74
D++EC P CG A C + G + C C E Y + ++C DIDEC + C +
Sbjct: 2 DVDECSLKPSICGT-AVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS--ENMCA--QL 56
Query: 75 CENTVPGFNCLC--PKGYSGKPDAKVACEQV 103
C N G+ C C KG+ D K +CE V
Sbjct: 57 CVNYPGGYTCYCDGKKGFKLAQDQK-SCEVV 86
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 241 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAI 297
D++EC P CG A C + G + C C E Y + ++C DIDEC + C +
Sbjct: 2 DVDECSLKPSICGT-AVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS--ENMCA--QL 56
Query: 298 CENTVPGFNCLCPKGYSGKPDAKVACEQE 326
C N G+ C C GK K+A +Q+
Sbjct: 57 CVNYPGGYTCYC----DGKKGFKLAQDQK 81
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 23/161 (14%)
Query: 30 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECK--ALDKPCGLRAIC-ENTVPG----F 82
N + + C+C E C + +ECK L K CG C EN P +
Sbjct: 15 NGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMY 74
Query: 83 NCLCPKGYSGKPDAKVACEQVDV--TSECSSNFECVNN--AECVDGLCYCRPGF-----D 133
C C +GY+ K D V +DV C + EC+ +E C C G D
Sbjct: 75 KCGCIEGYTLKEDTCV----LDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPED 130
Query: 134 ARGSVCVDVDECQLGDPCGPQAQ-CTNTPGSFRCDCVEGYV 173
+ CQL C + C N G ++C C+EG+
Sbjct: 131 EKKCTKTGETACQL--KCNTDNEVCKNVEGVYKCQCMEGFT 169
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 253 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECK--ALDKPCGLRAIC-ENTVPG----F 305
N + + C+C E C + +ECK L K CG C EN P +
Sbjct: 15 NGQLVQMSNHFKCMCNEGLVHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQVNMY 74
Query: 306 NCLCPKGYSGKPDAKV--ACEQEKAGE 330
C C +GY+ K D V C+ + GE
Sbjct: 75 KCGCIEGYTLKEDTCVLDVCQYKNCGE 101
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 71 LRAICENTVPGFN-----CLCPKGYSGKPDA----KVACEQVDVTSECSSNFECVNNAEC 121
RA CE N C+C +G++ P ++ C Q ++C N + + EC
Sbjct: 8 FRANCEYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQLFCNQTACPADCDPNTQ--ASCEC 65
Query: 122 VDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDC 168
+G G +C D+DEC+ G C C N PG+F C C
Sbjct: 66 PEGY------ILDDGFICTDIDECENGGFC--SGVCHNLPGTFECIC 104
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 229 VIEDAKRNLNRVDINECQSNPCGVNATCI-------DTQGSYSCVCKEHYTGDPYQACSD 281
V+E A C NPC TC DT Y C C + G Q +
Sbjct: 39 VVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ--HN 96
Query: 282 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
I+EC+ +PC IC + V ++C CP + G+
Sbjct: 97 INECEV--EPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 8 RILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
R G+ +INEC+ PC C D +YSC C + G
Sbjct: 86 RGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 6 LVRILLGVRAIVDINECQSNPCGVNATCI-------DTQGSYSCVCKEHYTGDPYQACSD 58
+V + C NPC TC DT Y C C + G Q +
Sbjct: 39 VVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ--HN 96
Query: 59 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
I+EC+ +PC IC + V ++C CP + G+
Sbjct: 97 INECEV--EPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 216 EFSRIFSKHLKLFVIEDAKRNLNRV----DINECQSNPCGVNATCIDTQGSYSCVCKEHY 271
E S + + + R N + +INEC+ PC C D +YSC C +
Sbjct: 67 EISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEF 126
Query: 272 TG 273
G
Sbjct: 127 MG 128
>pdb|4G81|D Chain D, Crystal Structure Of A Hexonate Dehydrogenase Ortholog
(Target Efi- 506402 From Salmonella Enterica, Unliganded
Structure
pdb|4G81|A Chain A, Crystal Structure Of A Hexonate Dehydrogenase Ortholog
(Target Efi- 506402 From Salmonella Enterica, Unliganded
Structure
pdb|4G81|B Chain B, Crystal Structure Of A Hexonate Dehydrogenase Ortholog
(Target Efi- 506402 From Salmonella Enterica, Unliganded
Structure
pdb|4G81|C Chain C, Crystal Structure Of A Hexonate Dehydrogenase Ortholog
(Target Efi- 506402 From Salmonella Enterica, Unliganded
Structure
Length = 255
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 147 LGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYL------ 200
L D G A T + EG A R+ D+R TLL D L
Sbjct: 4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIR----ATLLAESVDTLTRKGYD 59
Query: 201 -HSVASDISDILTIIHEFSRI 220
H VA D++D L I FS++
Sbjct: 60 AHGVAFDVTDELAIEAAFSKL 80
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 82 FNCLCPKGYSGKPDA----KVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
+ C+C +G++ P ++ C Q ++C N + + EC +G G
Sbjct: 24 YLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQ--ASCECPEGY------ILDDGF 75
Query: 138 VCVDVDECQLGDPCGPQAQCTNTPGSFRCDC 168
+C D+DEC+ G C C N PG+F C C
Sbjct: 76 ICTDIDECENGGFC--SGVCHNLPGTFECIC 104
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 78 TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
PGF C+CP G+ G V C++ + ++ C + C G C C PG + G
Sbjct: 194 VTPGF-CICPPGFYG-----VNCDKANCSTTCFNGGTCF-----YPGKCICPPGLE--GE 240
Query: 138 VCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
C ++ +C PC +C G +C C +GY G
Sbjct: 241 QC-EISKCP--QPCRNGGKCI---GKSKCKCSKGYQG 271
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 229 VIEDAKRN----LNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDE 284
+ +DA+R ++ D ++C S+PC +C D SY C C + G + D D+
Sbjct: 30 IFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQ 88
Query: 285 CKALDKPCGLRAIC-ENTVPGFNCLCPKGYSGKPDA 319
+++ G C ++T +C C +GYS D
Sbjct: 89 LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG 124
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 8 RILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDK 67
R L + D ++C S+PC +C D SY C C + G + D D+ +++
Sbjct: 36 RTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQLICVNE 94
Query: 68 PCGLRAIC-ENTVPGFNCLCPKGYSGKPDA 96
G C ++T +C C +GYS D
Sbjct: 95 NGGCEQYCSDHTGTKRSCRCHEGYSLLADG 124
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 229 VIEDAKRN----LNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDE 284
+ +DA+R ++ D ++C S+PC +C D SY C C + G + D D+
Sbjct: 30 IFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQ 88
Query: 285 CKALDKPCGLRAIC-ENTVPGFNCLCPKGYS 314
+++ G C ++T +C C +GYS
Sbjct: 89 LICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 3 FVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC 62
F R L + D ++C S+PC +C D SY C C + G + D D+
Sbjct: 31 FKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQL 89
Query: 63 KALDKPCGLRAIC-ENTVPGFNCLCPKGYS 91
+++ G C ++T +C C +GYS
Sbjct: 90 ICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 229 VIEDAKRN----LNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDE 284
+ +DA R ++ D ++C S+PC +C D SY C C + G + D D+
Sbjct: 30 IFKDAXRTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQ 88
Query: 285 CKALDKPCGLRAIC-ENTVPGFNCLCPKGYSGKPDA 319
+++ G C ++T +C C +GYS D
Sbjct: 89 LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG 124
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 3 FVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC 62
F R L + D ++C S+PC +C D SY C C + G + D D+
Sbjct: 31 FKDAXRTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQL 89
Query: 63 KALDKPCGLRAIC-ENTVPGFNCLCPKGYSGKPDA 96
+++ G C ++T +C C +GYS D
Sbjct: 90 ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG 124
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 81
C S PC N +C D+ Y+C C Y G + +EC ++ G + C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAK--NECHP-ERTDGCQHFCLPGQES 64
Query: 82 FNCLCPKGYSGKPDAK 97
+ C C +GY D K
Sbjct: 65 YTCSCAQGYRLGEDHK 80
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 304
C S PC N +C D+ Y+C C Y G + +EC ++ G + C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAK--NECHP-ERTDGCQHFCLPGQES 64
Query: 305 FNCLCPKGYSGKPDAK 320
+ C C +GY D K
Sbjct: 65 YTCSCAQGYRLGEDHK 80
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 115 CVNNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCV 169
C++N C D + C C PG++ GS C + +EC G Q C S+ C C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYE--GSNCELAKNECHPERTDGCQHFCLPGQESYTCSCA 70
Query: 170 EGY 172
+GY
Sbjct: 71 QGY 73
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr132747
Length = 195
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 41 DGDQCETS-PCQNQGKCKDGLGEYTCTCLEGFEG 73
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 33
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 33
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 1 DGDQCETS-PCQNQGKCKDGLGEYTCTCLEGFEG 33
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 229 VIEDAKRN----LNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDE 284
+ +DA R ++ D ++C S+PC +C D SY C C + G + D D+
Sbjct: 30 IFKDAXRTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQ 88
Query: 285 CKALDKPCGLRAIC-ENTVPGFNCLCPKGYS 314
+++ G C ++T +C C +GYS
Sbjct: 89 LICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 3 FVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC 62
F R L + D ++C S+PC +C D SY C C + G + D D+
Sbjct: 31 FKDAXRTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQL 89
Query: 63 KALDKPCGLRAIC-ENTVPGFNCLCPKGYS 91
+++ G C ++T +C C +GYS
Sbjct: 90 ICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 45 KEHYTG-DPYQACSDIDECK-ALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 97
+E +TG Y +DI+EC +D PC C N + G+ C CP Y D K
Sbjct: 102 EERFTGFAAYYVATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMK 154
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 268 KEHYTG-DPYQACSDIDECK-ALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
+E +TG Y +DI+EC +D PC C N + G+ C CP Y D K
Sbjct: 102 EERFTGFAAYYVATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMK 154
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating
Basic Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 41 DGDQCETS-PCQNQGKCKDGLGEYTCTCLEGFEG 73
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 78
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 46 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 78
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 46 DGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEG 78
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
VD ++C+SNPC +C D SY C C + G
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
VD ++C+SNPC +C D SY C C + G
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 33
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 1 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 33
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 1 DGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEG 33
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 34
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 2 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 34
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 2 DGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEG 34
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 35
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 35
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 3 DGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEG 35
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 157 CTNTPGSFRCDCVEGYVGAPPRIKCK 182
CTN+ G+F+C C GY P R CK
Sbjct: 14 CTNSEGAFQCWCEAGYELRPDRRSCK 39
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule,
S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+++PC C D G Y+C C E + G
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 35
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+++PC C D G Y+C C E + G
Sbjct: 3 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 35
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ PC Q +C + G + C C+EG+ G
Sbjct: 3 DGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEG 35
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 8 RILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALD 66
R G + + ++C +P V+ C + + C+C+ ++ G Q C D++ C
Sbjct: 86 RCQYGWQGLY-CDKCIPHPGCVHGICNEP---WQCLCETNWGG---QLCDKDLNYC-GTH 137
Query: 67 KPCGLRAICENTVP-GFNCLCPKGYSG 92
+PC C NT P + C CP+GYSG
Sbjct: 138 QPCLNGGTCSNTGPDKYQCSCPEGYSG 164
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 263 YSCVCKEHYTGDPYQAC-SDIDECKALDKPCGLRAICENTVP-GFNCLCPKGYSG 315
+ C+C+ ++ G Q C D++ C +PC C NT P + C CP+GYSG
Sbjct: 114 WQCLCETNWGG---QLCDKDLNYC-GTHQPCLNGGTCSNTGPDKYQCSCPEGYSG 164
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 114 ECVNNAECVDGLC----YCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNT-PGSFRCD 167
+C+ + CV G+C C + G +C D++ C PC C+NT P ++C
Sbjct: 98 KCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCS 157
Query: 168 CVEGYVG 174
C EGY G
Sbjct: 158 CPEGYSG 164
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 234 KRNLNRVDINECQSNPCGVNATCIDTQGSYSCVC 267
K + +R C SNPC N C D Y C C
Sbjct: 386 KPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 419
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVC 44
C SNPC N C D Y C C
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDC 419
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 234 KRNLNRVDINECQSNPCGVNATCIDTQGSYSCVC 267
K + +R C SNPC N C D Y C C
Sbjct: 611 KPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC 644
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVC 44
C SNPC N C D Y C C
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDC 644
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ G PC Q C G + C C EG+ G
Sbjct: 46 DGDQCE-GHPCLNQGHCKXGIGDYTCTCAEGFEG 78
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 131 GFDARGSVCVDVDECQLGDPCGPQ--AQCTNTPGSFRCDCVEGYV 173
GF+A D+DECQ+ P C N G F C C GYV
Sbjct: 114 GFEAF-YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 14 RAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRA 73
+ VD ++C+ NPC C D SY C C+ + G + C C + C +
Sbjct: 43 KQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCELDATCNIKNGRC--KQ 97
Query: 74 ICENTVPG-FNCLCPKGYSGKPDAK 97
C+ C C GY PD K
Sbjct: 98 FCKTGADSKVLCSCTTGYRLAPDQK 122
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
VD ++C+ NPC C D SY C C+ + G + C C + C + C+
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCELDATCNIKNGRC--KQFCK 100
Query: 300 NTVPG-FNCLCPKGYSGKPDAK 320
C C GY PD K
Sbjct: 101 TGADSKVLCSCTTGYRLAPDQK 122
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 216 EFSRIFSKHLKLFVIEDAK----------RNLNRVDINECQSNPCGVNATCIDTQGSYSC 265
+ R F K+ + E A + R+ C++NPC C++ +G C
Sbjct: 9 QLLRFFHKNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLC 68
Query: 266 VCKEHYTG 273
C YTG
Sbjct: 69 HCPVGYTG 76
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ G PC Q C + G + C C EG+ G
Sbjct: 2 DGDQCE-GHPCLNQGHCKDGIGDYTCTCAEGFEG 34
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 50
D ++C+ +PC C D G Y+C C E + G
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEG 34
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTG 273
D ++C+ +PC C D G Y+C C E + G
Sbjct: 2 DGDQCEGHPCLNQGHCKDGIGDYTCTCAEGFEG 34
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 107 SECSSNFECVNNAECVDGLCYCRPGFDARGSVCVD-VDECQLGDPC-GPQAQCT---NTP 161
+EC +++C DGLC + F G+VC + V++C + + C G +QC +
Sbjct: 239 AECCKKCTLTQDSQCSDGLCCKKCKFQPMGTVCREAVNDCDIRETCSGNSSQCAPNIHKM 298
Query: 162 GSFRCDCVEG 171
+ CD V+G
Sbjct: 299 DGYSCDGVQG 308
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 45 KEHYTG-DPYQACSDIDECKAL-DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
+E +TG D + D+DECK D+ C N + G+ C C GY D +
Sbjct: 106 EERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT 161
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 268 KEHYTG-DPYQACSDIDECKAL-DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
+E +TG D + D+DECK D+ C N + G+ C C GY D +
Sbjct: 106 EERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT 161
>pdb|3E07|A Chain A, Crystal Structure Of Spatzle Cystine Knot
pdb|3E07|B Chain B, Crystal Structure Of Spatzle Cystine Knot
Length = 114
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 274 DPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQE 326
D Y+ I+EC+ D+PC A N +N +C + Y+ + A + + E
Sbjct: 36 DEYKQAIQIEECEGADQPCDFAA---NFPQSYNPICKQHYTQQTLASIKSDGE 85
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 51 DPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACE-QVDVTS 107
D Y+ I+EC+ D+PC A N +N +C + Y+ + A + + ++DV
Sbjct: 36 DEYKQAIQIEECEGADQPCDFAA---NFPQSYNPICKQHYTQQTLASIKSDGELDVVQ 90
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D D+C+ G PC Q C G + C C EG+ G
Sbjct: 2 DGDQCE-GHPCLNQGHCKXGIGDYTCTCAEGFEG 34
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 45 KEHYTG-DPYQACSDIDECKAL-DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
+E +TG D + D+DECK D+ C N + G+ C C GY D +
Sbjct: 106 EERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT 161
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 268 KEHYTG-DPYQACSDIDECKAL-DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
+E +TG D + D+DECK D+ C N + G+ C C GY D +
Sbjct: 106 EERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT 161
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 237 LNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRA 296
++ D ++C S+PC +C D SY C C + G + D D+ +++ G
Sbjct: 1 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD-DQLICVNENGGCEQ 59
Query: 297 IC-ENTVPGFNCLCPKGYSGKPDA 319
C ++T +C C +GYS D
Sbjct: 60 YCSDHTGTKRSCRCHEGYSLLADG 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,139,964
Number of Sequences: 62578
Number of extensions: 500811
Number of successful extensions: 1711
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 403
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)