RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2857
(332 letters)
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a
large number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 49.2 bits (118), Expect = 2e-08
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
D+DEC G+PC C NT GS+RC C GY G
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34
Score = 44.9 bits (107), Expect = 6e-07
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 18 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD 51
DI+EC S NPC TC++T GSY C C YTG
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35
Score = 44.9 bits (107), Expect = 6e-07
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 241 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD 274
DI+EC S NPC TC++T GSY C C YTG
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35
Score = 39.9 bits (94), Expect = 4e-05
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
DIDEC A PC C NTV + C CP GY+G+
Sbjct: 1 DIDEC-ASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35
Score = 39.9 bits (94), Expect = 4e-05
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
DIDEC A PC C NTV + C CP GY+G+
Sbjct: 1 DIDEC-ASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35
Score = 27.2 bits (61), Expect = 1.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 108 ECSSNFECVNNAECVDGL----CYCRPGF 132
EC+S C N CV+ + C C PG+
Sbjct: 4 ECASGNPCQNGGTCVNTVGSYRCSCPPGY 32
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 48.4 bits (116), Expect = 4e-08
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGY 172
D+DEC G+PC C NT GS+RC+C GY
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY 32
Score = 41.5 bits (98), Expect = 1e-05
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 18 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYT 49
DI+EC S NPC TC++T GSY C C YT
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 41.5 bits (98), Expect = 1e-05
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 241 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYT 272
DI+EC S NPC TC++T GSY C C YT
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYS 91
DIDEC A PC C NTV + C CP GY+
Sbjct: 1 DIDEC-ASGNPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYS 314
DIDEC A PC C NTV + C CP GY+
Sbjct: 1 DIDEC-ASGNPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 27.2 bits (61), Expect = 1.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 108 ECSSNFECVNNAECVDGL----CYCRPGF 132
EC+S C N CV+ + C C PG+
Sbjct: 4 ECASGNPCQNGGTCVNTVGSYRCECPPGY 32
>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal
growth factor (EGF) presents in a large number of
proteins, mostly animal; the list of proteins currently
known to contain one or more copies of an EGF-like
pattern is large and varied; the functional significance
of EGF-like domains in what appear to be unrelated
proteins is not yet clear; a common feature is that
these repeats are found in the extracellular domain of
membrane-bound proteins or in proteins known to be
secreted (exception: prostaglandin G/H synthase); the
domain includes six cysteine residues which have been
shown to be involved in disulfide bonds; the main
structure is a two-stranded beta-sheet followed by a
loop to a C-terminal short two-stranded sheet;
Subdomains between the conserved cysteines vary in
length; the region between the 5th and 6th cysteine
contains two conserved glycines of which at least one
is present in most EGF-like domains; a subset of
these bind calcium.
Length = 36
Score = 40.2 bits (94), Expect = 3e-05
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 144 ECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
EC +PC C NTPGS+RC C GY G
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31
Score = 36.7 bits (85), Expect = 6e-04
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 21 ECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPY 53
EC SNPC TC++T GSY CVC YTGD
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDRS 34
Score = 36.7 bits (85), Expect = 6e-04
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 244 ECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPY 276
EC SNPC TC++T GSY CVC YTGD
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDRS 34
Score = 30.9 bits (70), Expect = 0.069
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 61 ECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
EC A PC C NT + C+CP GY+G
Sbjct: 1 EC-AASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 30.9 bits (70), Expect = 0.069
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 284 ECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
EC A PC C NT + C+CP GY+G
Sbjct: 1 EC-AASNPCSNGGTCVNTPGSYRCVCPPGYTGD 32
Score = 25.1 bits (55), Expect = 6.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 108 ECSSNFECVNNAECVDGL----CYCRPGF 132
EC+++ C N CV+ C C PG+
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGY 29
>gnl|CDD|205157 pfam12947, EGF_3, EGF domain. This family includes a variety of
EGF-like domain homologues. This family includes the
C-terminal domain of the malaria parasite MSP1 protein.
Length = 36
Score = 37.5 bits (88), Expect = 3e-04
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 22 CQSNP--CGVNATCIDTQGSYSCVCKEHYTGD 51
C N C NATC +T GS++C CK YTGD
Sbjct: 1 CAENNGGCHPNATCTNTGGSFTCTCKSGYTGD 32
Score = 37.5 bits (88), Expect = 3e-04
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 245 CQSNP--CGVNATCIDTQGSYSCVCKEHYTGD 274
C N C NATC +T GS++C CK YTGD
Sbjct: 1 CAENNGGCHPNATCTNTGGSFTCTCKSGYTGD 32
Score = 37.1 bits (87), Expect = 4e-04
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 149 DPCGPQAQCTNTPGSFRCDCVEGYVG 174
C P A CTNT GSF C C GY G
Sbjct: 6 GGCHPNATCTNTGGSFTCTCKSGYTG 31
Score = 31.7 bits (73), Expect = 0.033
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 68 PCGLRAICENTVPGFNCLCPKGYSG 92
C A C NT F C C GY+G
Sbjct: 7 GCHPNATCTNTGGSFTCTCKSGYTG 31
Score = 31.7 bits (73), Expect = 0.033
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 291 PCGLRAICENTVPGFNCLCPKGYSG 315
C A C NT F C C GY+G
Sbjct: 7 GCHPNATCTNTGGSFTCTCKSGYTG 31
>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain.
Length = 42
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
D+DEC C +C NT+ F C+CP GY D
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTN 41
Score = 36.2 bits (84), Expect = 0.001
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
D+DEC C +C NT+ F C+CP GY D
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTN 41
Score = 35.8 bits (83), Expect = 0.001
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 141 DVDEC-QLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
DVDEC C C NT GSF C C +GY C
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42
Score = 33.5 bits (77), Expect = 0.008
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 18 DINECQS--NPCGVNATCIDTQGSYSCVCKEHYTGDP 52
D++EC + C N C++T GS+ CVC + Y +
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNE 37
Score = 33.5 bits (77), Expect = 0.008
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 241 DINECQS--NPCGVNATCIDTQGSYSCVCKEHYTGDP 275
D++EC + C N C++T GS+ CVC + Y +
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNE 37
>gnl|CDD|214544 smart00181, EGF, Epidermal growth factor-like domain.
Length = 35
Score = 33.6 bits (77), Expect = 0.006
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 144 ECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
EC G PC C NTPGS+ C C GY G
Sbjct: 1 ECASGGPCS-NGTCINTPGSYTCSCPPGYTGDK 32
Score = 31.7 bits (72), Expect = 0.031
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 21 ECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDPY 53
EC S PC N TCI+T GSY+C C YTGD
Sbjct: 1 ECASGGPCS-NGTCINTPGSYTCSCPPGYTGDKR 33
Score = 31.7 bits (72), Expect = 0.031
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 244 ECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDPY 276
EC S PC N TCI+T GSY+C C YTGD
Sbjct: 1 ECASGGPCS-NGTCINTPGSYTCSCPPGYTGDKR 33
Score = 25.2 bits (55), Expect = 6.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 74 ICENTVPGFNCLCPKGYSGKPD 95
C NT + C CP GY+G
Sbjct: 12 TCINTPGSYTCSCPPGYTGDKR 33
Score = 25.2 bits (55), Expect = 6.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 297 ICENTVPGFNCLCPKGYSGKPD 318
C NT + C CP GY+G
Sbjct: 12 TCINTPGSYTCSCPPGYTGDKR 33
>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate,
extracellular matrix molecules mediate cell-matrix and
matrix-matrix interactions thereby providing tissue
integrity. Some members of the matrilin family are
expressed specifically in developing cartilage
rudiments. The matrilin family consists of at least four
members. All the members of the matrilin family contain
VWA domains, EGF-like domains and a heptad repeat
coiled-coiled domain at the carboxy terminus which is
responsible for the oligomerization of the matrilins.
The VWA domains have been shown to be essential for
matrilin network formation by interacting with matrix
ligands.
Length = 224
Score = 36.2 bits (84), Expect = 0.012
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 135 RGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
+G +CV D C Q C +TPGS+ C C EGY
Sbjct: 180 QGKICVVPDLCATLSH-VCQQVCISTPGSYLCACTEGYALLE 220
Score = 31.2 bits (71), Expect = 0.49
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 56 CSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
C D C L C + +C +T + C C +GY+ D K
Sbjct: 184 CVVPDLCATLSHVC--QQVCISTPGSYLCACTEGYALLEDNKT 224
Score = 31.2 bits (71), Expect = 0.49
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 279 CSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
C D C L C + +C +T + C C +GY+ D K
Sbjct: 184 CVVPDLCATLSHVC--QQVCISTPGSYLCACTEGYALLEDNKT 224
Score = 27.7 bits (62), Expect = 8.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYT 49
V + C + CI T GSY C C E Y
Sbjct: 185 VVPDLCATLSHVCQQVCISTPGSYLCACTEGYA 217
Score = 27.7 bits (62), Expect = 8.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYT 272
V + C + CI T GSY C C E Y
Sbjct: 185 VVPDLCATLSHVCQQVCISTPGSYLCACTEGYA 217
>gnl|CDD|201923 pfam01683, EB, EB module. This domain has no known function. It is
found in several C. elegans proteins. The domain
contains 8 conserved cysteines that probably form four
disulphide bridges. This domain is found associated with
kunitz domains pfam00014.
Length = 52
Score = 33.2 bits (76), Expect = 0.013
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 107 SECSSNFECVNNAECVDGLCYCRPGFDARGSVC 139
C + +C + C++G C C GF G C
Sbjct: 20 ESCEYDEQCQGGSVCINGTCQCPEGFTLVGGRC 52
>gnl|CDD|215652 pfam00008, EGF, EGF-like domain. There is no clear separation
between noise and signal. pfam00053 is very similar,
but has 8 instead of 6 conserved cysteines. Includes
some cytokine receptors. The EGF domain misses the
N-terminus regions of the Ca2+ binding EGF domains
(this is the main reason of discrepancy between
swiss-prot domain start/end and Pfam). The family is
hard to model due to many similar but different
sub-types of EGF domains. Pfam certainly misses a
number of EGF domains.
Length = 32
Score = 32.0 bits (73), Expect = 0.021
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 25 NPCGVNATCIDTQGSYSCVCKEHYTGD 51
NPC TC+DT G Y+C C E YTG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 32.0 bits (73), Expect = 0.021
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 248 NPCGVNATCIDTQGSYSCVCKEHYTGD 274
NPC TC+DT G Y+C C E YTG
Sbjct: 5 NPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 29.7 bits (67), Expect = 0.15
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 145 CQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
C +PC C +TPG + C+C EGY G
Sbjct: 1 CSPNNPCSNGGTCVDTPGGYTCECPEGYTG 30
Score = 29.3 bits (66), Expect = 0.22
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 64 ALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
+ + PC C +T G+ C CP+GY+GK
Sbjct: 2 SPNNPCSNGGTCVDTPGGYTCECPEGYTGK 31
Score = 29.3 bits (66), Expect = 0.22
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 287 ALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
+ + PC C +T G+ C CP+GY+GK
Sbjct: 2 SPNNPCSNGGTCVDTPGGYTCECPEGYTGK 31
>gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase.
Length = 348
Score = 29.4 bits (66), Expect = 3.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 305 FNCLCPKGYSGKPDAKVACEQEKAG 329
F C CPKGY +PDAK + AG
Sbjct: 221 FVCACPKGY--EPDAKTVEKARAAG 243
Score = 28.6 bits (64), Expect = 5.3
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 82 FNCLCPKGYSGKPDAKV 98
F C CPKGY +PDAK
Sbjct: 221 FVCACPKGY--EPDAKT 235
>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like. cEGF, or complement
Clr-like EGF, domains have six conserved cysteine
residues disulfide-bonded into the characteristic
pattern 'ababcc'. They are found in blood coagulation
proteins such as fibrillin, Clr and Cls, thrombomodulin,
and the LDL receptor. The core fold of the EGF domain
consists of two small beta-hairpins packed against each
other. Two major structural variants have been
identified based on the structural context of the
C-terminal cysteine residue of disulfide 'c' in the
C-terminal hairpin: hEGFs and cEGFs. In cEGFs the
C-terminal thiol resides on the C-terminal beta-sheet,
resulting in long loop-lengths between the cysteine
residues of disulfide 'c', typically C[10+]XC. These
longer loop-lengths may have arisen by selective
cysteine loss from a four-disulfide EGF template such as
laminin or integrin. Tandem cEGF domains have five
linking residues between terminal cysteines of adjacent
domains. cEGF domains may or may not bind calcium in the
linker region. cEGF domains with the consensus motif
CXN4X[F,Y]XCXC are hydroxylated exclusively on the
asparagine residue.
Length = 24
Score = 25.5 bits (57), Expect = 3.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 163 SFRCDCVEGYVGAPPRIKCKDV 184
S+ C C GY + C+D+
Sbjct: 1 SYTCSCPPGYQLSGDGRTCEDI 22
Score = 25.1 bits (56), Expect = 5.9
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 126 CYCRPGF--DARGSVCVDVDE 144
C C PG+ G C D+DE
Sbjct: 4 CSCPPGYQLSGDGRTCEDIDE 24
Score = 24.7 bits (55), Expect = 6.4
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 39 SYSCVCKEHYTGDP-YQACSDIDE 61
SY+C C Y + C DIDE
Sbjct: 1 SYTCSCPPGYQLSGDGRTCEDIDE 24
Score = 24.7 bits (55), Expect = 6.4
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 262 SYSCVCKEHYTGDP-YQACSDIDE 284
SY+C C Y + C DIDE
Sbjct: 1 SYTCSCPPGYQLSGDGRTCEDIDE 24
>gnl|CDD|237320 PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase;
Provisional.
Length = 114
Score = 27.4 bits (62), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 78 TVPGFNCLCPKGYSGKPD 95
T+P F LCPK +G+PD
Sbjct: 21 TLPEFTSLCPK--TGQPD 36
Score = 27.4 bits (62), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 301 TVPGFNCLCPKGYSGKPD 318
T+P F LCPK +G+PD
Sbjct: 21 TLPEFTSLCPK--TGQPD 36
>gnl|CDD|213775 TIGR03139, QueF-II, 7-cyano-7-deazaguanine reductase. This
enzyme catalyzes the 4-electron reduction of the cyano
group of 7-cyano-7-deazaguanine (proQ1) to an amine.
Although related to a large family of GTP
cyclohydrolases (pfam01227), the relationship is
structural and not germane to the catalytic mechanism.
This mode represents the shorter, gram-positive version
of the enzyme as found in B. subtilis. The enzymatic
step represents the first point at which the
biosynthesis of queuosine in bacteria and eukaryotes is
distinguished from the biosynthesis of archaeosine in
archaea.
Length = 115
Score = 26.9 bits (60), Expect = 6.2
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 76 ENTVPGFNCLCPKGYSGKPD 95
E P F LCPK +G+PD
Sbjct: 21 EFVCPEFTSLCPK--TGQPD 38
Score = 26.9 bits (60), Expect = 6.2
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 299 ENTVPGFNCLCPKGYSGKPD 318
E P F LCPK +G+PD
Sbjct: 21 EFVCPEFTSLCPK--TGQPD 38
>gnl|CDD|218955 pfam06247, Plasmod_Pvs28, Plasmodium ookinete surface protein
Pvs28. This family consists of several ookinete surface
protein (Pvs28) from several species of Plasmodium.
Pvs25 and Pvs28 are expressed on the surface of
ookinetes. These proteins are potential candidates for
vaccine and induce antibodies that block the infectivity
of Plasmodium vivax in immunised animals.
Length = 196
Score = 27.8 bits (62), Expect = 6.2
Identities = 40/166 (24%), Positives = 52/166 (31%), Gaps = 35/166 (21%)
Query: 30 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALD---KPCGLRAICENTVPG----- 81
N I + C C E Y C + +C L+ K CG A C N
Sbjct: 10 NGYLIQMSNHFECKCNEGYVLKNENTCEEKVKCDKLENVNKVCGEYATCINQANKAEEKA 69
Query: 82 FNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDAR------ 135
C C GY + V V ++C NN C G C P
Sbjct: 70 LKCGCINGY-------TLSQGVCVPNKC-------NNKVCGSGKCIVDPANPNNTTCSCN 115
Query: 136 -GSVCVDVDECQL-GD-----PCGPQAQCTNTPGSFRCDCVEGYVG 174
G V +C G+ C +C G + C C EG+ G
Sbjct: 116 IGKVPDQNGKCTKTGETKCSLKCKENEECKLVGGYYECVCKEGFPG 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.461
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,941,499
Number of extensions: 1424100
Number of successful extensions: 1003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 88
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)