RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2857
(332 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 119 bits (299), Expect = 5e-33
Identities = 40/171 (23%), Positives = 56/171 (32%), Gaps = 18/171 (10%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 76
D+NEC ++ C++T GSY C C + +P + C D C L
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG-----NCYLDIRPR 56
Query: 77 NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG----LCYCRPGF 132
C G + C + + C LC GF
Sbjct: 57 GDNGDTACSNEIGVGVSKASC--CCSLG---KAWGT-PCEMCPAVNTSEYKILCPGGEGF 110
Query: 133 --DARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
+ + D+DECQ +C NT GSF+C C GY C
Sbjct: 111 RPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 70.9 bits (174), Expect = 4e-15
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 299
D+NEC ++ C++T GSY C C + +P + C D C L
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG-----NCYLDIRPR 56
Query: 300 NTVPGFNCLCPKGYSGKPDAK 320
C G +
Sbjct: 57 GDNGDTACSNEIGVGVSKASC 77
Score = 68.5 bits (168), Expect = 3e-14
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 299
+ + PC + ++ C E + +P DIDEC+ L C C
Sbjct: 80 SLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQ-GGKCI 138
Query: 300 NTVPGFNCLCPKGYSGKPD 318
NT F C CP GY D
Sbjct: 139 NTFGSFQCRCPTGYYLNED 157
Score = 64.3 bits (157), Expect = 1e-12
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
VD C ++ G +C + C + + PC +
Sbjct: 42 VDTRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA--WGTPCEMCPAVN 96
Query: 300 NTVPGFNCLCPKGYSGKPD 318
+ C +G+ P
Sbjct: 97 TSEYKILCPGGEGFRPNPI 115
Score = 47.7 bits (114), Expect = 5e-07
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVR 185
DV+EC C C NTPGS+ CDC + P R+ C D R
Sbjct: 2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVDTR 45
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 17 VDINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 52
DI+ECQ P CI+T GS+ C C Y +
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 156
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 240 VDINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 275
DI+ECQ P CI+T GS+ C C Y +
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 156
Score = 35.0 bits (81), Expect = 0.014
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
+D++EC LD + C NT + C CP + P
Sbjct: 1 TDVNEC--LDPTTCISGNCVNTPGSYICDCPPDFELNPTRV 39
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 101 bits (253), Expect = 2e-26
Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 28/168 (16%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 76
DI+EC+S+PC N C ++ GS+ C C T DP + C + + C
Sbjct: 3 DIDECESSPCI-NGVCKNSPGSFICECSSESTLDPTKTICIETIKG-----------TCW 50
Query: 77 NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG--LCYCRPGFD- 133
TV C + +C S+ + C C G+
Sbjct: 51 QTVIDGRCEININGATLKS------------QCCSSLGAAWGSPCTLCQVDPICGKGYSR 98
Query: 134 ARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
+G+ C D+DEC++ C NT GSF+C C G C
Sbjct: 99 IKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 72.8 bits (179), Expect = 7e-16
Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 38/180 (21%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYL 200
D+DEC+ C N+PGSF C+C P + C + +
Sbjct: 3 DIDECESS--PCINGVCKNSPGSFICECSSESTLDPTKTICIETI----------KGTCW 50
Query: 201 HSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQ 260
+V +I N+N + + G T
Sbjct: 51 QTVIDGRCEI-------------------------NINGATLKSQCCSSLGAAWGSPCTL 85
Query: 261 GSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
+C + Y+ C DIDEC + +C NT F C CP G + +
Sbjct: 86 CQVDPICGKGYSRIKGTQCEDIDEC-EVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGR 144
Score = 33.1 bits (76), Expect = 0.044
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD 318
+DIDEC++ + +C+N+ F C C + P
Sbjct: 2 ADIDECES---SPCINGVCKNSPGSFICECSSESTLDPT 37
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 93.3 bits (232), Expect = 1e-23
Identities = 41/175 (23%), Positives = 61/175 (34%), Gaps = 44/175 (25%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD------PYQACSDIDECKALDK-PCG 70
D C + C +++C+ + +C C ++ P + C DI+EC L K CG
Sbjct: 1 DSRGC-ARWCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 71 LRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRP 130
+ C NT ++C+C GY AK
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAK--------------------------------T 84
Query: 131 GFDARGSVCVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
+ + C DVDEC G C C NT GS+ C C G+ +
Sbjct: 85 FKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
Score = 71.4 bits (175), Expect = 2e-15
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 17 VDINECQS---NPCGVNATCIDTQGSYSCVCKEHYTGDPYQA---------CSDIDECKA 64
DINEC + CG + C +T+GSY CVC Y C D+DEC +
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101
Query: 65 LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC 100
C +C NTV ++C C G+ +
Sbjct: 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137
Score = 71.4 bits (175), Expect = 2e-15
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 240 VDINECQS---NPCGVNATCIDTQGSYSCVCKEHYTGDPYQA---------CSDIDECKA 287
DINEC + CG + C +T+GSY CVC Y C D+DEC +
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101
Query: 288 LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC 323
C +C NTV ++C C G+ +
Sbjct: 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137
Score = 59.4 bits (144), Expect = 3e-11
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD------PYQACSDIDECKALDK-PCG 293
D C + C +++C+ + +C C ++ P + C DI+EC L K CG
Sbjct: 1 DSRGC-ARWCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 294 LRAICENTVPGFNCLCPKGYSGKPDAK 320
+ C NT ++C+C GY AK
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAK 83
Score = 49.8 bits (119), Expect = 9e-08
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 240 VDINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECK 286
D++EC S C + C +T GSYSC C+ + C+
Sbjct: 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 83.4 bits (207), Expect = 7e-20
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 24/142 (16%)
Query: 18 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPCGLRAI 74
D++EC +NPC CI+T GS+ C C + YTG C D++EC + PC A
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG---PRCEIDVNEC--VSNPCQNDAT 58
Query: 75 CENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRP 130
C + + F C+C GY G CE T EC+S+ C++N C+D + C C
Sbjct: 59 CLDQIGEFQCICMPGYEGV-----HCEV--NTDECASS-PCLHNGRCLDKINEFQCECPT 110
Query: 131 GFDARGSVC-VDVDECQLGDPC 151
GF G +C VD+
Sbjct: 111 GF--TGHLCQVDLHHIL-DAQK 129
Score = 80.0 bits (198), Expect = 1e-18
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 55 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFE 114
+ D+DEC PC C NT+ F C C +GY+G CE +EC SN
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP-----RCEI--DVNECVSN-P 52
Query: 115 CVNNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCV 169
C N+A C+D + C C PG++ G C V+ DEC PC +C + F+C+C
Sbjct: 53 CQNDATCLDQIGEFQCICMPGYE--GVHCEVNTDECA-SSPCLHNGRCLDKINEFQCECP 109
Query: 170 EGYVG 174
G+ G
Sbjct: 110 TGFTG 114
Score = 66.9 bits (164), Expect = 7e-14
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
+D+NEC SNPC +ATC+D G + C+C Y G + + DEC PC C
Sbjct: 43 IDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDEC--ASSPCLHNGRCL 98
Query: 77 NTVPGFNCLCPKGYSGK 93
+ + F C CP G++G
Sbjct: 99 DKINEFQCECPTGFTGH 115
Score = 66.9 bits (164), Expect = 7e-14
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
+D+NEC SNPC +ATC+D G + C+C Y G + + DEC PC C
Sbjct: 43 IDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDEC--ASSPCLHNGRCL 98
Query: 300 NTVPGFNCLCPKGYSGK 316
+ + F C CP G++G
Sbjct: 99 DKINEFQCECPTGFTGH 115
Score = 63.4 bits (155), Expect = 1e-12
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 241 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPCGLRAI 297
D++EC +NPC CI+T GS+ C C + YTG C D++EC + PC A
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG---PRCEIDVNEC--VSNPCQNDAT 58
Query: 298 CENTVPGFNCLCPKGYSGK 316
C + + F C+C GY G
Sbjct: 59 CLDQIGEFQCICMPGYEGV 77
Score = 48.8 bits (117), Expect = 2e-07
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPC 69
V+ +EC S+PC N C+D + C C +TG C D+ LD
Sbjct: 81 VNTDECASSPCLHNGRCLDKINEFQCECPTGFTGH---LCQVDLHHI--LDAQK 129
Score = 48.8 bits (117), Expect = 2e-07
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPC 292
V+ +EC S+PC N C+D + C C +TG C D+ LD
Sbjct: 81 VNTDECASSPCLHNGRCLDKINEFQCECPTGFTGH---LCQVDLHHI--LDAQK 129
Score = 41.8 bits (99), Expect = 4e-05
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 278 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
+ D+DEC PC C NT+ F C C +GY+G
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 39
Score = 40.7 bits (96), Expect = 1e-04
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 139 CVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGA 175
DVDEC LG +PC +C NT GSF C C++GY G
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 39
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 84.7 bits (209), Expect = 3e-18
Identities = 42/168 (25%), Positives = 55/168 (32%), Gaps = 41/168 (24%)
Query: 18 DINECQSNPCGVNATCIDT-QGSYSC-VCKEHYTGDPYQACSDIDECKA---LDKPCGLR 72
D + C SNPC A C GS+SC C + G+ C D+DEC +
Sbjct: 2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKV 60
Query: 73 AICENTVPGFNCL-CPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPG 131
C NT PGF+CL CP Y G
Sbjct: 61 PRCVNTQPGFHCLPCPPRYRGNQPV-----------------------------GVGLEA 91
Query: 132 FDARGSVCVDVDECQLG-DPCGPQAQCTNTP----GSFRCDCVEGYVG 174
VC + C+ C A+C ++C+C GY G
Sbjct: 92 AKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG 139
Score = 69.3 bits (169), Expect = 3e-13
Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 241 DINECQSNPCGVNATCIDT-QGSYSC-VCKEHYTGDPYQACSDIDECKA---LDKPCGLR 295
D + C SNPC A C GS+SC C + G+ C D+DEC +
Sbjct: 2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKV 60
Query: 296 AICENTVPGFNCL-CPKGYSGKPDAKVACEQEKA 328
C NT PGF+CL CP Y G V E K
Sbjct: 61 PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKT 94
Score = 62.0 bits (150), Expect = 9e-11
Identities = 37/167 (22%), Positives = 53/167 (31%), Gaps = 27/167 (16%)
Query: 17 VDINECQSN-----PCGVNATCIDTQGSYSC-VCKEHYTGDP------------YQACSD 58
D++EC C++TQ + C C Y G+ Q C
Sbjct: 42 EDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEP 101
Query: 59 IDECKALDKPCGLRAICEN----TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFE 114
+ CK C A C + P + C C GY+G D + E D+ + N
Sbjct: 102 ENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG--DGLICGEDSDLDGWPNLNLV 159
Query: 115 CVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTP 161
C NA C + S D D+ +GD C
Sbjct: 160 CATNATYHCIKDNCPHLPN---SGQEDFDKDGIGDACDDDDDNDGVT 203
Score = 54.6 bits (131), Expect = 2e-08
Identities = 49/272 (18%), Positives = 70/272 (25%), Gaps = 102/272 (37%)
Query: 57 SDIDECKALDKPCGLRAICENTVPG-FNCL-CPKGYSGKPDAKVACEQVDVTSECSSNFE 114
+D D C L PC A C + G ++C CP G+ G
Sbjct: 1 ADPDGC--LSNPCFPGAQCSSFPDGSWSCGFCPVGFLGN--------------------- 37
Query: 115 CVNNAECVDGLCYCRPGFDARGSVCVDVDECQLG----DPCGPQAQCTNTPGSFRCD-CV 169
G+ C D+DEC L +C NT F C C
Sbjct: 38 ---------------------GTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCP 76
Query: 170 EGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFV 229
Y G P +
Sbjct: 77 PRYRGNQPVGVGLE---------------------------------------------A 91
Query: 230 IEDAKRNLNRVDINECQSNPCGVNATCI----DTQGSYSCVCKEHYTGDPYQAC--SDID 283
+ K+ + + +++ C +A CI + Y C C+ Y GD SD+D
Sbjct: 92 AKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLD 151
Query: 284 ECKALDKPCGLRAICENTVPGFNCLCPKGYSG 315
L+ C A L G
Sbjct: 152 GWPNLNLVCATNATYHCIKDNCPHLPNSGQED 183
Score = 39.6 bits (92), Expect = 0.001
Identities = 34/198 (17%), Positives = 53/198 (26%), Gaps = 42/198 (21%)
Query: 18 DINECQ--SNPCGVNATCI----DTQGSYSCVCKEHYTGDPYQAC--SDIDECKALDKPC 69
N C+ ++ C +A CI + Y C C+ Y GD SD+D L+ C
Sbjct: 101 PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVC 160
Query: 70 GLRAICENTVPGFNCLCPKGYS-----GKPDAKVACEQVDVTSECSSNFECVNNAE---- 120
A L G G DA + D ++ N + + N
Sbjct: 161 ATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADY 220
Query: 121 -----------------------CVDGL-CYCRPGFDARGSVCVDVDECQLGDPCGPQAQ 156
+G C D V + D C +
Sbjct: 221 DKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDD-VFNERDNCPYVYNTDQRDT 279
Query: 157 CTNTPGSFRCDCVEGYVG 174
+ G +C +
Sbjct: 280 DGDGVGDHCDNCPLVHNP 297
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 80.2 bits (198), Expect = 4e-18
Identities = 25/161 (15%), Positives = 37/161 (22%), Gaps = 16/161 (9%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
D ++C+++PC C D G Y+C C E + G C C
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK-NCELFTRKLC--SLDNGDCDQFCH 96
Query: 77 NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPGF 132
C C +GY+ + K C G
Sbjct: 97 EEQNSVVCSCARGYTLADNGK-------ACIPTGPY-PCGKQTLERRKRSVAQATSSSGE 148
Query: 133 DARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYV 173
D L DP + +
Sbjct: 149 APDSITWKPYDAADL-DPTENPFDLLDFNQTQPERGDNNLT 188
Score = 70.6 bits (173), Expect = 1e-14
Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 24/160 (15%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
EC C + + D D+C PC + C++ +
Sbjct: 10 RECMEETCSYEEAR-----EVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPGFDAR 135
+ C C +G+ GK CE CS + + C + C C G+
Sbjct: 61 GEYTCTCLEGFEGK-----NCEL-FTRKLCSLD-NGDCDQFCHEEQNSVVCSCARGY--T 111
Query: 136 GSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
+ PCG Q + G
Sbjct: 112 LADNGKACIPT-GPYPCGKQTLERRKRSVAQATSSSGEAP 150
Score = 60.5 bits (147), Expect = 3e-11
Identities = 14/108 (12%), Positives = 24/108 (22%), Gaps = 11/108 (10%)
Query: 16 IVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 75
+ C + + C + Q S C C YT PCG + +
Sbjct: 78 LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG--KACIPT--GPYPCGKQTLE 133
Query: 76 ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD 123
G + + N + +D
Sbjct: 134 RRKRSVAQATSSSGEAPDS-----ITWKPY-DAADLD-PTENPFDLLD 174
Score = 60.5 bits (147), Expect = 4e-11
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
D ++C+++PC C D G Y+C C E + G C C
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK-NCELFTRKLC--SLDNGDCDQFCH 96
Query: 300 NTVPGFNCLCPKGYSGKPD 318
C C +GY+ +
Sbjct: 97 EEQNSVVCSCARGYTLADN 115
Score = 54.4 bits (131), Expect = 5e-09
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 4/81 (4%)
Query: 235 RNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL 294
+N C + + C + Q S C C YT PCG
Sbjct: 74 KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG--KACIPT--GPYPCGK 129
Query: 295 RAICENTVPGFNCLCPKGYSG 315
+ + G +
Sbjct: 130 QTLERRKRSVAQATSSSGEAP 150
Score = 53.6 bits (129), Expect = 1e-08
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 65 LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG 124
L++ C K + D +C ++ C N +C DG
Sbjct: 8 LERECMEETCSYEEAREVFEDSDKTNEFWN----KYKDGD---QCETS-PCQNQGKCKDG 59
Query: 125 L----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
L C C GF+ G C + + D C S C C GY A
Sbjct: 60 LGEYTCTCLEGFE--GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 41.7 bits (98), Expect = 9e-05
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
EC C + + D D+C PC + C++ +
Sbjct: 10 RECMEETCSYEEAR-----EVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60
Query: 303 PGFNCLCPKGYSGK 316
+ C C +G+ GK
Sbjct: 61 GEYTCTCLEGFEGK 74
Score = 29.7 bits (67), Expect = 0.86
Identities = 3/33 (9%), Positives = 8/33 (24%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYT 272
+ +P +D + + T
Sbjct: 156 KPYDAADLDPTENPFDLLDFNQTQPERGDNNLT 188
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 76.1 bits (188), Expect = 9e-18
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 297
+ VD++EC+ + CI+T GSY C C Y + C D DEC
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE-CVDTDEC--SVGNPCGNGT 57
Query: 298 CENTVPGFNCLCPKGYSGKPD 318
C+N + GF C C +G+ P
Sbjct: 58 CKNVIGGFECTCEEGFEPGPM 78
Score = 75.3 bits (186), Expect = 1e-17
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
VD++EC+ + CI+T GSY C C Y + C D DEC C+
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE-CVDTDEC--SVGNPCGNGTCK 59
Query: 77 NTVPGFNCLCPKGYSGKPD 95
N + GF C C +G+ P
Sbjct: 60 NVIGGFECTCEEGFEPGPM 78
Score = 64.9 bits (159), Expect = 8e-14
Identities = 32/122 (26%), Positives = 40/122 (32%), Gaps = 45/122 (36%)
Query: 55 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFE 114
+ D+DEC + C NT + C CP GY
Sbjct: 1 SAVDMDEC--KEPDVCKHGQCINTDGSYRCECPFGYIL---------------------- 36
Query: 115 CVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
G+ CVD DEC +G+PCG C N G F C C EG+
Sbjct: 37 --------------------AGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEP 75
Query: 175 AP 176
P
Sbjct: 76 GP 77
Score = 49.5 bits (119), Expect = 3e-08
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 139 CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
VD+DEC+ D C QC NT GS+RC+C GY+ A +C D
Sbjct: 2 AVDMDECKEPDVC-KHGQCINTDGSYRCECPFGYILAG--NECVDT 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC 56
VD +EC N TC + G + C C+E + P C
Sbjct: 42 VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 46.4 bits (111), Expect = 3e-07
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC 279
VD +EC N TC + G + C C+E + P C
Sbjct: 42 VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 76.6 bits (187), Expect = 7e-17
Identities = 33/179 (18%), Positives = 49/179 (27%), Gaps = 11/179 (6%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC--KALDKPCGLRAI 74
+ + + N + + C+C E C + +EC + L CG
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ 61
Query: 75 C-----ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCR 129
C V + C C +GY+ D V S +E C C
Sbjct: 62 CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCA 121
Query: 130 PGFDARGS---VCVDVDECQLGD-PCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
G C E C N G + C C+EG+ C
Sbjct: 122 IGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGP 180
Score = 58.5 bits (140), Expect = 2e-10
Identities = 23/130 (17%), Positives = 35/130 (26%), Gaps = 4/130 (3%)
Query: 21 ECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP 80
C + Y C C E YT D+ + + + +
Sbjct: 55 ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQ 114
Query: 81 GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG--LCYCRPGF--DARG 136
C C G P+ + C T+ V+G C C GF D
Sbjct: 115 SAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEX 174
Query: 137 SVCVDVDECQ 146
+VC+
Sbjct: 175 NVCLGPHHHH 184
Score = 56.2 bits (134), Expect = 1e-09
Identities = 21/183 (11%), Positives = 41/183 (22%), Gaps = 11/183 (6%)
Query: 141 DVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDY 199
+ + + D Q F C C EG V +
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 200 LHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDT 259
D + + ++ V++ + +
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ--------YXNCGESGECIVEYLSE 112
Query: 260 QGSYSCVCKEHYTGDPYQA--CSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP 317
S C C +P C+ E +C N + C C +G++
Sbjct: 113 IQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDX 172
Query: 318 DAK 320
+
Sbjct: 173 EXN 175
Score = 52.0 bits (123), Expect = 3e-08
Identities = 29/229 (12%), Positives = 51/229 (22%), Gaps = 47/229 (20%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVN 117
+ + F C+C +G + CE+ + + C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSEN--TCEEXNECXXETLGXACGE 58
Query: 118 NAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPP 177
+C++ + C C+EGY
Sbjct: 59 FGQCIEN-------------------------------PDPAQVNMYXCGCIEGYTLXED 87
Query: 178 RIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNL 237
Y + S + + S S + + +
Sbjct: 88 TCVLDVC-------------QYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXC 134
Query: 238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDEC 285
CQ N C + +G Y C C E +T D C
Sbjct: 135 TXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 48.1 bits (113), Expect = 6e-07
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC--KALDKPCGLRAI 297
+ + + N + + C+C E C + +EC + L CG
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ 61
Query: 298 C-----ENTVPGFNCLCPKGYSGKPDAKVACEQE 326
C V + C C +GY+ D V +
Sbjct: 62 CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ 95
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 74.3 bits (183), Expect = 8e-17
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 58 DIDECKALDKPCGLRAICENTVPG-FNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
+D C C+ + C+C +G++ P C+ + C + +C
Sbjct: 3 PVDPCF----RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPA--DCD 56
Query: 117 NNAECVDGLCYCRPGFD-ARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
N C C G+ G +C D+DEC+ G C C N PG+F C C A
Sbjct: 57 PNT---QASCECPEGYILDDGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSALA 111
Query: 176 P 176
Sbjct: 112 G 112
Score = 53.5 bits (129), Expect = 3e-09
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 236 NLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLR 295
+ + N A C D SC C E Y D C+DIDEC +
Sbjct: 35 IPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYILDDGFICTDIDEC---ENGGFCS 90
Query: 296 AICENTVPGFNCLCPKGYSGKPDAKVAC 323
+C N F C+C + C
Sbjct: 91 GVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 53.1 bits (128), Expect = 3e-09
Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
+ N A C D SC C E Y D C+DIDEC + +C N
Sbjct: 40 HRCQMFCNQTACPADC-DPNTQASCECPEGYILDDGFICTDIDEC---ENGGFCSGVCHN 95
Query: 78 TVPGFNCLCPKGYSGKPDAKVAC 100
F C+C + C
Sbjct: 96 LPGTFECICGPDSALAGQIGTDC 118
Score = 48.5 bits (116), Expect = 1e-07
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 241 DINECQSNPCGVNATCID-TQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
++ C C C Q SY CVC E + P+ + C+ A C+
Sbjct: 3 PVDPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPH----EPHRCQMFCNQTACPADCD 56
Query: 300 NTVPGFNCLCPKGY 313
+C CP+GY
Sbjct: 57 PN-TQASCECPEGY 69
Score = 33.9 bits (78), Expect = 0.016
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP 52
DI+EC N + C + G++ C+C
Sbjct: 78 TDIDEC-ENGGFCSGVCHNLPGTFECICGPDSALAG 112
Score = 33.5 bits (77), Expect = 0.027
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 141 DVDECQLGDPCGPQAQCTN-TPGSFRCDCVEGYVGAPPRIKC 181
VD C + QC S+ C C EG+ P
Sbjct: 3 PVDPCF---RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
Score = 29.6 bits (67), Expect = 0.60
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 281 DIDECKALDKPCGLRAICENTVPG-FNCLCPKGYSGKPDAKVACE 324
+D C C+ + C+C +G++ P C+
Sbjct: 3 PVDPCF----RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQ 43
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 71.6 bits (176), Expect = 6e-16
Identities = 31/153 (20%), Positives = 44/153 (28%), Gaps = 48/153 (31%)
Query: 30 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKG 89
+ Y E+ Q +EC + C +C + G+ CLCP G
Sbjct: 3 HHHHHHPMSDYDIPTTENLYF---QGAMGTNECLDNNGGCS--YVCNDLKIGYECLCPDG 57
Query: 90 YSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGD 149
+ + C D+DECQ D
Sbjct: 58 FQLVAQRR-----------------------------------------CEDIDECQDPD 76
Query: 150 PCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
C C N G ++C C EG+ P CK
Sbjct: 77 TC--SQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 60.4 bits (147), Expect = 6e-12
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
+ NEC N G + C D + Y C+C + + + C DIDEC C +C
Sbjct: 27 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCS--QLCV 83
Query: 77 NTVPGFNCLCPKGYSGKPDAK 97
N G+ C C +G+ P K
Sbjct: 84 NLEGGYKCQCEEGFQLDPHTK 104
Score = 60.4 bits (147), Expect = 6e-12
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
+ NEC N G + C D + Y C+C + + + C DIDEC C +C
Sbjct: 27 MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCS--QLCV 83
Query: 300 NTVPGFNCLCPKGYSGKPDAK 320
N G+ C C +G+ P K
Sbjct: 84 NLEGGYKCQCEEGFQLDPHTK 104
Score = 48.9 bits (117), Expect = 8e-08
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 253 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKG 312
+ Y E+ Q +EC + C +C + G+ CLCP G
Sbjct: 3 HHHHHHPMSDYDIPTTENLYF---QGAMGTNECLDNNGGCS--YVCNDLKIGYECLCPDG 57
Query: 313 YSGKPD 318
+
Sbjct: 58 FQLVAQ 63
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 70.0 bits (172), Expect = 2e-15
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 18 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ--ACSDIDECKALDKPCGLRAI 74
DI+EC+ +P C++T G + C C E Y C DIDEC+ C +
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGV 60
Query: 75 CENTVPGFNCLCPKGYSGKPDAK 97
C NT + C CP G+ P+
Sbjct: 61 CHNTEGSYRCECPPGHQLSPNIS 83
Score = 70.0 bits (172), Expect = 2e-15
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 241 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ--ACSDIDECKALDKPCGLRAI 297
DI+EC+ +P C++T G + C C E Y C DIDEC+ C +
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGV 60
Query: 298 CENTVPGFNCLCPKGYSGKPDAK 320
C NT + C CP G+ P+
Sbjct: 61 CHNTEGSYRCECPPGHQLSPNIS 83
Score = 65.0 bits (159), Expect = 9e-14
Identities = 33/125 (26%), Positives = 42/125 (33%), Gaps = 40/125 (32%)
Query: 57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
+DIDEC+ CG R C NT F C C +GY
Sbjct: 1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFM--------------------- 38
Query: 117 NNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
C+D+DECQ C NT GS+RC+C G+ +P
Sbjct: 39 ------------------MMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80
Query: 177 PRIKC 181
C
Sbjct: 81 NISAC 85
Score = 51.9 bits (125), Expect = 5e-09
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIK-CKDV 184
D+DEC++ + QC NTPG F C C EGY +K C D+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDI 46
Score = 40.0 bits (94), Expect = 6e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 17 VDINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 52
+DI+ECQ +P C +T+GSY C C + P
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80
Score = 40.0 bits (94), Expect = 6e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 240 VDINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 275
+DI+ECQ +P C +T+GSY C C + P
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80
Score = 39.6 bits (93), Expect = 1e-04
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACE 324
+DIDEC+ CG R C NT F C C +GY C
Sbjct: 1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCM 44
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 63.1 bits (154), Expect = 1e-12
Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 24/143 (16%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
EC C + + + D D+C PC + C++ +
Sbjct: 10 RECMEETC-----SYEEAREVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPGFDAR 135
+ C C +G+ GK CE CS + + C + C C G+
Sbjct: 61 GEYTCTCLEGFEGK-----NCEL-FTRKLCSLD-NGDCDQFCHEEQNSVVCSCARGY--T 111
Query: 136 GSVC-VDVDECQLGDPCGPQAQC 157
+ PCG Q
Sbjct: 112 LADNGKACIPTG-PYPCGKQTLE 133
Score = 61.5 bits (150), Expect = 6e-12
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 13/106 (12%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAIC 75
D ++C+++PC C D G Y+C C E + G + C + +LD C
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG---KNCELFTRKLCSLD-NGDCDQFC 95
Query: 76 ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAEC 121
C C +GY+ + C
Sbjct: 96 HEEQNSVVCSCARGYTLADN------GKAC-IPTGPY-PCGKQTLE 133
Score = 61.2 bits (149), Expect = 7e-12
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAIC 298
D ++C+++PC C D G Y+C C E + G + C + +LD C
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG---KNCELFTRKLCSLD-NGDCDQFC 95
Query: 299 ENTVPGFNCLCPKGYSGKPD 318
C C +GY+ +
Sbjct: 96 HEEQNSVVCSCARGYTLADN 115
Score = 59.6 bits (145), Expect = 2e-11
Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 15/116 (12%)
Query: 65 LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG 124
L++ C K + +C ++ C N +C DG
Sbjct: 8 LERECMEETCSYEEAREVFEDSDKTNEFWN-----KYKD--GDQCETS-PCQNQGKCKDG 59
Query: 125 L----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
L C C GF+ G C + + D C S C C GY A
Sbjct: 60 LGEYTCTCLEGFE--GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 44.6 bits (106), Expect = 4e-06
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
EC C + + + D D+C PC + C++ +
Sbjct: 10 RECMEETC-----SYEEAREVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60
Query: 303 PGFNCLCPKGYSGK 316
+ C C +G+ GK
Sbjct: 61 GEYTCTCLEGFEGK 74
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 62.4 bits (152), Expect = 3e-12
Identities = 34/150 (22%), Positives = 48/150 (32%), Gaps = 36/150 (24%)
Query: 21 ECQSNPCGVNATCID--TQGSYSCVCKEHYTGD----------PYQACSDIDECKALDKP 68
C NPC C+ GS+SC C + +T + + C P
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPC--TPNP 59
Query: 69 C-------GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAEC 121
C A +T G+ C CP+G++G C+ +EC C N C
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI-----HCQH--NINECEVE-PCKNGGIC 111
Query: 122 VDGL----CYCRPGFDARGSVC-VDVDECQ 146
D + C C F G C
Sbjct: 112 TDLVANYSCECPGEF--MGRNCQYKGGGHH 139
Score = 62.0 bits (151), Expect = 4e-12
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 25/134 (18%)
Query: 60 DECKALDKPCGLRAICENTVP--GFNCLCPKGYSGK-----PDAKVACEQVDVTSECSSN 112
D C PC IC + F+C CP G++ + E+ C+ N
Sbjct: 1 DIC--DPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPN 58
Query: 113 FECVNNAECVDGL-----------CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNT 160
C N C C C GF G C +++EC+ +PC CT+
Sbjct: 59 -PCHNGGTCEISEAYRGDTFIGYVCKCPRGF--NGIHCQHNINECE-VEPCKNGGICTDL 114
Query: 161 PGSFRCDCVEGYVG 174
++ C+C ++G
Sbjct: 115 VANYSCECPGEFMG 128
Score = 54.0 bits (130), Expect = 3e-09
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 230 IEDAKRNLNRVDINECQSNPCGVNATCI-------DTQGSYSCVCKEHYTGDPYQACS-D 281
+E A C NPC TC DT Y C C + G C +
Sbjct: 40 VEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG---IHCQHN 96
Query: 282 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
I+EC +PC IC + V ++C CP + G+
Sbjct: 97 INEC--EVEPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 52.4 bits (126), Expect = 1e-08
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 17 VDINECQSNPCGVNATCI-------DTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKP 68
C NPC TC DT Y C C + G C +I+EC +P
Sbjct: 50 TSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG---IHCQHNINEC--EVEP 104
Query: 69 CGLRAICENTVPGFNCLCPKGYSGK 93
C IC + V ++C CP + G+
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGR 129
Score = 45.5 bits (108), Expect = 2e-06
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 244 ECQSNPCGVNATCID--TQGSYSCVCKEHYTGD----------PYQACSDIDECKALDKP 291
C NPC C+ GS+SC C + +T + + C P
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPC--TPNP 59
Query: 292 C-------GLRAICENTVPGFNCLCPKGYSGK 316
C A +T G+ C CP+G++G
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI 91
Score = 45.5 bits (108), Expect = 3e-06
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDEC 62
+INEC+ PC C D +YSC C + G + C
Sbjct: 95 HNINECEVEPCKNGGICTDLVANYSCECPGEFMG---RNCQYKGGGH 138
Score = 45.5 bits (108), Expect = 3e-06
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDEC 285
+INEC+ PC C D +YSC C + G + C
Sbjct: 95 HNINECEVEPCKNGGICTDLVANYSCECPGEFMG---RNCQYKGGGH 138
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 60.1 bits (146), Expect = 1e-11
Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 17 VDINECQSNP--------CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 68
VD ++C P C + TCID GS+SC C+ + G Q C
Sbjct: 4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL--DN 61
Query: 69 CGLRAICENTVPGFNCLCPKGYSGKPDAK 97
G C V C C GY D
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90
Score = 60.1 bits (146), Expect = 1e-11
Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 240 VDINECQSNP--------CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 291
VD ++C P C + TCID GS+SC C+ + G Q C
Sbjct: 4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL--DN 61
Query: 292 CGLRAICENTVPGFNCLCPKGYSGKPDAK 320
G C V C C GY D
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90
Score = 55.1 bits (133), Expect = 6e-10
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 100 CEQVDVTSECSSNFECVNNAECVDGL----CYCRPGFDARG-SVCVDVDECQLGDPCGPQ 154
C + + C+S C + C+DG+ C CR G++ R V C L D G
Sbjct: 9 CLVLPLEHPCASL--CCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL-DNGGCT 65
Query: 155 AQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C G RC C GY ++C
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 95
Score = 43.9 bits (104), Expect = 6e-06
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAIC 298
V C + G C++ G C C Y C + PCG
Sbjct: 52 VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF-----PCGRPWKR 106
Query: 299 EN 300
Sbjct: 107 ME 108
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 137 SVCVDVDECQ-------LGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
S VD D+C C C + GSF CDC G+ G
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG 45
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 58.4 bits (142), Expect = 2e-11
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 18 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAIC 75
D++EC P A C + G + C C E Y + +C DIDEC + C +C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC--SENMCA--QLC 57
Query: 76 ENTVPGFNCLC--PKGYSGKPD 95
N G+ C C KG+ D
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQD 79
Score = 58.4 bits (142), Expect = 2e-11
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 241 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAIC 298
D++EC P A C + G + C C E Y + +C DIDEC + C +C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC--SENMCA--QLC 57
Query: 299 ENTVPGFNCLC--PKGYSGKPD 318
N G+ C C KG+ D
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQD 79
Score = 56.1 bits (136), Expect = 2e-10
Identities = 31/129 (24%), Positives = 41/129 (31%), Gaps = 46/129 (35%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVN 117
D+DEC CG A+C+N F C CP+GY
Sbjct: 2 DVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNLK---------------------- 38
Query: 118 NAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCV--EGYVGA 175
C D+DEC C C N PG + C C +G+ A
Sbjct: 39 ------------------SKSCEDIDECSEN-MC--AQLCVNYPGGYTCYCDGKKGFKLA 77
Query: 176 PPRIKCKDV 184
+ C+ V
Sbjct: 78 QDQKSCEVV 86
Score = 36.9 bits (86), Expect = 0.001
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
D+DEC CG A+C+N F C CP+GY +K
Sbjct: 2 DVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNLKSK 40
Score = 36.1 bits (84), Expect = 0.001
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKA 64
DI+EC N C C++ G Y+C C + G ++ D C+
Sbjct: 43 EDIDECSENMC--AQLCVNYPGGYTCYC-DGKKG--FKLAQDQKSCEV 85
Score = 36.1 bits (84), Expect = 0.001
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKA 287
DI+EC N C C++ G Y+C C + G ++ D C+
Sbjct: 43 EDIDECSENMC--AQLCVNYPGGYTCYC-DGKKG--FKLAQDQKSCEV 85
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 63.3 bits (153), Expect = 2e-11
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC P +C N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLE 57
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYC 128
G+ C C +G+ P K + +N V
Sbjct: 58 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 106
Score = 61.8 bits (149), Expect = 7e-11
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
NEC N G + C D + Y C+C + + + C DIDEC P +C N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLE 57
Query: 303 PGFNCLCPKGYSGKPDAK 320
G+ C C +G+ P K
Sbjct: 58 GGYKCQCEEGFQLDPHTK 75
Score = 32.1 bits (72), Expect = 0.27
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 283 DECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQE 326
+EC D G +C + G+ CLCP G+ + E
Sbjct: 1 NECL--DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE 42
Score = 31.4 bits (70), Expect = 0.46
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 299
DI+EC +P + C++ +G Y C C+E + DP+ AC + L
Sbjct: 39 DIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 97
Query: 300 NTVPGFNCLCPKGY 313
Sbjct: 98 TLDRSEYTSLIPNL 111
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 59.3 bits (144), Expect = 4e-11
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
VD ++C+ NPC C D SY C C+ + G + D + +
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE--LDATCN--IKNGRCKQFCKT 101
Query: 77 NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD 123
C C GY PD Q C +
Sbjct: 102 GADSKVLCSCTTGYRLAPD------QKSC-KPAVPF-PCGRVSVSHS 140
Score = 58.5 bits (142), Expect = 8e-11
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
VD ++C+ NPC C D SY C C+ + G + D + +
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE--LDATCN--IKNGRCKQFCKT 101
Query: 300 NTVPGFNCLCPKGYSGKPD 318
C C GY PD
Sbjct: 102 GADSKVLCSCTTGYRLAPD 120
Score = 56.2 bits (136), Expect = 6e-10
Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 24/143 (16%)
Query: 33 CIDTQGSYSCVCKEHYTGDP-----YQACSDIDECKALDKPCGLRAICENTVPGFNCLCP 87
CI+ + S+ E + ++ D D+C PC +C++ + + C C
Sbjct: 18 CIEEKCSFEEAR-EVFENTEKTNEFWKQYVDGDQC--EPNPCLNGGLCKDDINSYECWCQ 74
Query: 88 KGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG----LCYCRPGFDARGSVC-VDV 142
G+ GK CE + N LC C G+ R +
Sbjct: 75 VGFEGK-----NCEL--DATCNIKN-GRCKQFCKTGADSKVLCSCTTGY--RLAPDQKSC 124
Query: 143 DECQLGDPCGPQAQCTNTPGSFR 165
PCG + + R
Sbjct: 125 KPAV-PFPCGRVSVSHSPTTLTR 146
Score = 46.6 bits (111), Expect = 1e-06
Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 21/119 (17%)
Query: 61 ECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAE 120
EC +++ C E K + VD +C N C+N
Sbjct: 17 EC--IEEKCSFEEARE-----VFENTEKTNEF------WKQYVDG-DQCEPN-PCLNGGL 61
Query: 121 CVDGL----CYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
C D + C+C+ GF+ G C C + + Q T C C GY A
Sbjct: 62 CKDDINSYECWCQVGFE--GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 39.3 bits (92), Expect = 4e-04
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 256 CIDTQGSYSCVCKEHYTGDP-----YQACSDIDECKALDKPCGLRAICENTVPGFNCLCP 310
CI+ + S+ E + ++ D D+C PC +C++ + + C C
Sbjct: 18 CIEEKCSFEEAR-EVFENTEKTNEFWKQYVDGDQC--EPNPCLNGGLCKDDINSYECWCQ 74
Query: 311 KGYSGK 316
G+ GK
Sbjct: 75 VGFEGK 80
Score = 26.9 bits (60), Expect = 5.1
Identities = 3/21 (14%), Positives = 6/21 (28%)
Query: 238 NRVDINECQSNPCGVNATCID 258
++ PCG +
Sbjct: 120 DQKSCKPAVPFPCGRVSVSHS 140
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 59.7 bits (145), Expect = 5e-11
Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 28/158 (17%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
C+ D + + C E + G I C+
Sbjct: 32 KFCRPRDDFFGHYACD--QNGNKTCMEGWMGPECN--RAICRQG----CSPKHGSCKL-- 81
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG-LCYCRPGFDARGSV 138
+C C G+ G C+ +C + + C + C C + G +
Sbjct: 82 -PGDCRCQYGWQGL-----YCD------KCIPH-PGCVHGICNEPWQCLCETNWG--GQL 126
Query: 139 C-VDVDECQLGDPCGPQAQCTNT-PGSFRCDCVEGYVG 174
C D++ C PC C+NT P ++C C EGY G
Sbjct: 127 CDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSG 164
Score = 46.2 bits (110), Expect = 2e-06
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAICENT 78
++C +P V+ C + + C+C+ ++ G Q C D++ C +PC C NT
Sbjct: 97 DKCIPHPGCVHGICNE---PWQCLCETNWGG---QLCDKDLNYC-GTHQPCLNGGTCSNT 149
Query: 79 VPG-FNCLCPKGYSGK 93
P + C CP+GYSG
Sbjct: 150 GPDKYQCSCPEGYSGP 165
Score = 46.2 bits (110), Expect = 2e-06
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAICENT 301
++C +P V+ C + + C+C+ ++ G Q C D++ C +PC C NT
Sbjct: 97 DKCIPHPGCVHGICNE---PWQCLCETNWGG---QLCDKDLNYC-GTHQPCLNGGTCSNT 149
Query: 302 VPG-FNCLCPKGYSGK 316
P + C CP+GYSG
Sbjct: 150 GPDKYQCSCPEGYSGP 165
Score = 45.8 bits (109), Expect = 3e-06
Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 26/120 (21%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
+ C+ + +C C C+ + G D+C + P + IC
Sbjct: 64 NRAICRQGCSPKHGSCKL---PGDCRCQYGWQGL------YCDKC--IPHPGCVHGICNE 112
Query: 78 TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-----GLCYCRPGF 132
+ CLC + G+ C++ + C ++ C+N C + C C G+
Sbjct: 113 ---PWQCLCETNWGGQ-----LCDK--DLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
Score = 35.0 bits (81), Expect = 0.014
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 300
+ C+ + +C C C+ + G D+C + P + IC
Sbjct: 64 NRAICRQGCSPKHGSCKL---PGDCRCQYGWQGL------YCDKC--IPHPGCVHGICNE 112
Query: 301 TVPGFNCLCPKGYSGK 316
+ CLC + G+
Sbjct: 113 ---PWQCLCETNWGGQ 125
Score = 32.7 bits (75), Expect = 0.079
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 12/72 (16%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 304
S+ + + G + C ++Y G C+ C+ D G
Sbjct: 2 RGSHHHHHHGSIE---GRSAVTCDDYYYGF---GCN--KFCRPRDDFFG----HYACDQN 49
Query: 305 FNCLCPKGYSGK 316
N C +G+ G
Sbjct: 50 GNKTCMEGWMGP 61
Score = 31.6 bits (72), Expect = 0.19
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 11/74 (14%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
C+ D + + C E + G I C+
Sbjct: 32 KFCRPRDDFFGHYACD--QNGNKTCMEGWMGPECN--RAICRQ----GCSPKHGSCKL-- 81
Query: 303 PGFNCLCPKGYSGK 316
+C C G+ G
Sbjct: 82 -PGDCRCQYGWQGL 94
Score = 31.6 bits (72), Expect = 0.21
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 241 DINECQSN-PCGVNATCIDT-QGSYSCVCKEHYTGD 274
D+N C ++ PC TC +T Y C C E Y+G
Sbjct: 130 DLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 57.7 bits (140), Expect = 1e-10
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPC---GLR 72
D ++C S+PC +C D SY C C + G + C + D+ L G
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG---RNCETHKDDQ--LICVNENGGCE 99
Query: 73 AICENTVP-GFNCLCPKGYSGKPD 95
C + +C C +GYS D
Sbjct: 100 QYCSDHTGTKRSCRCHEGYSLLAD 123
Score = 57.7 bits (140), Expect = 1e-10
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPC---GLR 295
D ++C S+PC +C D SY C C + G + C + D+ L G
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG---RNCETHKDDQ--LICVNENGGCE 99
Query: 296 AICENTVP-GFNCLCPKGYSGKPD 318
C + +C C +GYS D
Sbjct: 100 QYCSDHTGTKRSCRCHEGYSLLAD 123
Score = 42.7 bits (101), Expect = 2e-05
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 108 ECSSNFECVNNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPC---GPQAQCTN 159
+C+S+ C N C D L C+C P F+ G C D+ G + C++
Sbjct: 49 QCASS-PCQNGGSCKDQLQSYICFCLPAFE--GRNCETHKDDQL-ICVNENGGCEQYCSD 104
Query: 160 TPGS-FRCDCVEGYVGAPPRIKCKD 183
G+ C C EGY + C
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTP 129
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 114 ECVN---NAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVE 170
EC + E + D D+C PC C + S+ C C+
Sbjct: 16 ECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQC-ASSPCQNGGSCKDQLQSYICFCLP 74
Query: 171 GYVG 174
+ G
Sbjct: 75 AFEG 78
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 60.2 bits (145), Expect = 2e-10
Identities = 30/164 (18%), Positives = 46/164 (28%), Gaps = 9/164 (5%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYT--GDPYQACSDIDECKALDKPCGLRAIC 75
C N G C +G+ C C Y D C D++EC + C
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRT-CQDVNEC---AEEGYCSQGC 57
Query: 76 ENTVPGFNCLCPKGYSGKPDAKVAC---EQVDVTSECSSNFECVNNAECVDGLCYCRPGF 132
N+ F C C GY +PD + + + + V L
Sbjct: 58 TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117
Query: 133 DARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
+ D + N GS + V + +P
Sbjct: 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161
Score = 57.1 bits (137), Expect = 2e-09
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYT--GDPYQACSDIDECKALDKPCGLRAIC 298
C N G C +G+ C C Y D C D++EC + C
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRT-CQDVNEC---AEEGYCSQGC 57
Query: 299 ENTVPGFNCLCPKGYSGKPD 318
N+ F C C GY +PD
Sbjct: 58 TNSEGAFQCWCEAGYELRPD 77
Score = 50.2 bits (119), Expect = 4e-07
Identities = 24/154 (15%), Positives = 34/154 (22%), Gaps = 18/154 (11%)
Query: 57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
+ + C G C+ C C GY D + C EC
Sbjct: 1 TGEENCN--VNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRT----------CQDVNECA 48
Query: 117 NNAECVDGLCYCRPGFDARGSVCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
C C G C +L D +A F V
Sbjct: 49 EEGYC-SQGCTNSEG----AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 103
Query: 176 PPRIKCKDVRWEFNVTLLFYETDYLHSVASDISD 209
+ N L + SD++
Sbjct: 104 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTL 137
Score = 34.4 bits (78), Expect = 0.048
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
+ + C G C+ C C GY D +
Sbjct: 1 TGEENCN--VNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGR 39
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 57.6 bits (139), Expect = 1e-09
Identities = 34/156 (21%), Positives = 48/156 (30%), Gaps = 33/156 (21%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
+ C C+ C+C + G C D C C C
Sbjct: 180 KALCTPRCMNGGLCVT---PGFCICPPGFYGV---NC-DKANC---STTCFNGGTCFYP- 228
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVC 139
C+CP G G+ CE C + +C+ C C G+ +G +C
Sbjct: 229 --GKCICPPGLEGE-----QCEISKCPQPCRNGGKCIGK-----SKCKCSKGY--QGDLC 274
Query: 140 -VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
V E CG C +C C EG+ G
Sbjct: 275 SKPVCEP----GCGAHGTCHE---PNKCQCQEGWHG 303
Score = 54.9 bits (132), Expect = 8e-09
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 32/157 (20%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
EC C C + C C + + G C + C C +C
Sbjct: 147 QQAEC-PGGCRNGGFCNE---RRICECPDGFHGP---HC-EKALC---TPRCMNGGLCVT 195
Query: 78 TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
C+CP G+ G C++ + ++ C + C G C C PG G
Sbjct: 196 P---GFCICPPGFYGV-----NCDKANCSTTCFNGGTCFYP-----GKCICPPGL--EGE 240
Query: 138 VCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
C ++ +C PC +C +C C +GY G
Sbjct: 241 QC-EISKCP--QPCRNGGKCIG---KSKCKCSKGYQG 271
Score = 47.2 bits (112), Expect = 3e-06
Identities = 29/134 (21%), Positives = 40/134 (29%), Gaps = 28/134 (20%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
S C TC C+C G + C I +C +PC C +
Sbjct: 212 KANCSTTCFNGGTCFYP---GKCICPPGLEG---EQCE-ISKC---PQPCRNGGKC---I 258
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDARGSV 138
C C KGY G C C C + C + C C+ G+ G
Sbjct: 259 GKSKCKCSKGYQGD-----LCS----KPVCEPG--CGAHGTCHEPNKCQCQEGW--HGRH 305
Query: 139 C-VDVDECQLGDPC 151
C + +G
Sbjct: 306 CNKRYEASLIGTKH 319
Score = 44.5 bits (105), Expect = 2e-05
Identities = 24/154 (15%), Positives = 35/154 (22%), Gaps = 34/154 (22%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 81
+ P + C G I + +
Sbjct: 87 TVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVI--------------VMNSEGNT 132
Query: 82 FNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDARGSVCV 140
K C+Q +EC C N C + +C C GF G C
Sbjct: 133 ILKTPQNAIFFK-----TCQQ----AECPGG--CRNGGFCNERRICECPDGF--HGPHC- 178
Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
++ C C C C G+ G
Sbjct: 179 --EKALCTPRCMNGGLCVT---PGFCICPPGFYG 207
Score = 39.1 bits (91), Expect = 0.001
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 300
+I++C PC CI C C + Y GD + E CG C
Sbjct: 243 EISKC-PQPCRNGGKCIG---KSKCKCSKGYQGDLCS--KPVCEP-----GCGAHGTCHE 291
Query: 301 TVPGFNCLCPKGYSGK 316
C C +G+ G+
Sbjct: 292 ---PNKCQCQEGWHGR 304
Score = 36.4 bits (84), Expect = 0.011
Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
S C TC C+C G + C I +C +PC C +
Sbjct: 212 KANCSTTCFNGGTCFYP---GKCICPPGLEG---EQCE-ISKC---PQPCRNGGKC---I 258
Query: 303 PGFNCLCPKGYSGK 316
C C KGY G
Sbjct: 259 GKSKCKCSKGYQGD 272
Score = 32.5 bits (74), Expect = 0.18
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 14/76 (18%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 300
EC C C + C C + + G C + C C +C
Sbjct: 147 QQAEC-PGGCRNGGFCNE---RRICECPDGFHGP---HC-EKALC---TPRCMNGGLCVT 195
Query: 301 TVPGFNCLCPKGYSGK 316
C+CP G+ G
Sbjct: 196 P---GFCICPPGFYGV 208
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 56.3 bits (136), Expect = 3e-09
Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
+ C S PC N +C D+ Y+C C Y G + +EC C
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNECHPERTDGCQH-FCL 59
Query: 77 NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLC 126
+ C C +GY D +Q +C+
Sbjct: 60 PGQESYTCSCAQGYRLGED----HKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 54.3 bits (131), Expect = 2e-08
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
+ C S PC N +C D+ Y+C C Y G + +EC C
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNECHPERTDGCQH-FCL 59
Query: 300 NTVPGFNCLCPKGYSGKPDAKVAC 323
+ C C +GY D K
Sbjct: 60 PGQESYTCSCAQGYRLGEDHKQCV 83
Score = 49.3 bits (118), Expect = 6e-07
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 109 CSSNFECVNNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGS 163
C S C++N C D + C C PG++ GS C + +EC G Q C S
Sbjct: 8 CISQ-PCLHNGSCQDSIWGYTCTCSPGYE--GSNCELAKNECHPERTDGCQHFCLPGQES 64
Query: 164 FRCDCVEGYVGAPPRIKC 181
+ C C +GY +C
Sbjct: 65 YTCSCAQGYRLGEDHKQC 82
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 45.9 bits (110), Expect = 2e-07
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
VD ++C+SNPC +C D SY C C + G
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 45.9 bits (110), Expect = 2e-07
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
VD ++C+SNPC +C D SY C C + G
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 140 VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
VD D+C+ +PC C + S+ C C G+ G
Sbjct: 1 VDGDQCE-SNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 32.1 bits (74), Expect = 0.015
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
D D+C PC C++ + + C CP G+ GK
Sbjct: 2 DGDQC--ESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 32.1 bits (74), Expect = 0.015
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
D D+C PC C++ + + C CP G+ GK
Sbjct: 2 DGDQC--ESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 26.7 bits (60), Expect = 1.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 108 ECSSNFECVNNAECVDGL----CYCRPGF 132
+C SN C+N C D + C+C GF
Sbjct: 5 QCESN-PCLNGGSCKDDINSYECWCPFGF 32
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 50.5 bits (120), Expect = 3e-07
Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 13/162 (8%)
Query: 21 ECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDECKALDKPCGLRAICENTV 79
C N C + + C+C + G +AC + + C + C++ V
Sbjct: 199 NHLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV 256
Query: 80 P----GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDA 134
+ C C G+ G AC +C C N C C C PG+
Sbjct: 257 FCLPDPYGCSCATGWKG-LQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGW-- 313
Query: 135 RGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDC-VEGYVG 174
+G C + G F C G+
Sbjct: 314 QGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPL 355
Score = 43.9 bits (103), Expect = 5e-05
Identities = 31/171 (18%), Positives = 46/171 (26%), Gaps = 34/171 (19%)
Query: 20 NECQSNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
+ + + + C+ G EC L C +C
Sbjct: 163 DAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWG---------PECNHLCTACMNNGVCHE 213
Query: 78 TVPGFNCLCPKGYSGKPDAKVACEQV--------DVTSECSSNFECVNNAEC--VDGLCY 127
C+CP G+ G+ CE+ CS C + C C
Sbjct: 214 DT--GECICPPGFMGR-----TCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCS 266
Query: 128 CRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNT---PGSFRCDCVEGYVG 174
C G+ +G C G C + C N C C G+ G
Sbjct: 267 CATGW--KGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQG 315
Score = 40.5 bits (94), Expect = 5e-04
Identities = 26/166 (15%), Positives = 40/166 (24%), Gaps = 17/166 (10%)
Query: 20 NECQSNPCGVNATCID----TQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 75
C C Y C C + G C++ C LR C
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKG---LQCNEACHPGFYGPDCKLRCSC 295
Query: 76 ENT---VPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGF 132
N CLC G+ G CE+ + + ++ E G
Sbjct: 296 NNGEMCDRFQGCLCSPGWQGL-----QCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKA 350
Query: 133 DA-RGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPP 177
++ + D + N F + PP
Sbjct: 351 SGWPLPTNEEMTLVKP-DGTVLHPKDFNHTDHFSVAIFTIHRILPP 395
Score = 30.4 bits (68), Expect = 0.92
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 244 ECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDECKALDKPCGLRAICENTV 302
C N C + + C+C + G +AC + + C + C++ V
Sbjct: 199 NHLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV 256
Query: 303 P----GFNCLCPKGYSGK 316
+ C C G+ G
Sbjct: 257 FCLPDPYGCSCATGWKGL 274
Score = 30.1 bits (67), Expect = 1.1
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 4/76 (5%)
Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
I + G ++ +CK G P ++ K L N
Sbjct: 323 IPRMTPKIVDLPDHIEVNSGKFNPICKAS--GWPLPTNEEMTLVKP--DGTVLHPKDFNH 378
Query: 79 VPGFNCLCPKGYSGKP 94
F+ + P
Sbjct: 379 TDHFSVAIFTIHRILP 394
Score = 30.1 bits (67), Expect = 1.1
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 4/76 (5%)
Query: 242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 301
I + G ++ +CK G P ++ K L N
Sbjct: 323 IPRMTPKIVDLPDHIEVNSGKFNPICKAS--GWPLPTNEEMTLVKP--DGTVLHPKDFNH 378
Query: 302 VPGFNCLCPKGYSGKP 317
F+ + P
Sbjct: 379 TDHFSVAIFTIHRILP 394
Score = 28.5 bits (63), Expect = 3.3
Identities = 17/81 (20%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 243 NECQSNPCGVNATCID----TQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
C C Y C C + G C++ C LR C
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKG---LQCNEACHPGFYGPDCKLRCSC 295
Query: 299 ENT---VPGFNCLCPKGYSGK 316
N CLC G+ G
Sbjct: 296 NNGEMCDRFQGCLCSPGWQGL 316
Score = 27.4 bits (60), Expect = 8.6
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 6/66 (9%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 304
C C C+C + G C + K L E
Sbjct: 290 KLRCSCNNGEMCDRF---QGCLCSPGWQG---LQCEREGIPRMTPKIVDLPDHIEVNSGK 343
Query: 305 FNCLCP 310
FN +C
Sbjct: 344 FNPICK 349
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 49.8 bits (118), Expect = 6e-07
Identities = 29/157 (18%), Positives = 45/157 (28%), Gaps = 28/157 (17%)
Query: 15 AIVDINECQSNPCGVNA-TCIDTQGSYSCVCKEHYTGDPYQACSDIDECKAL--DKPCGL 71
AI DI C ++A C+ +C C+ + TG D +CK +P
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGP------DCGKCKKNYQGRPWS- 339
Query: 72 RAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPG 131
G C S + C + C NN C C
Sbjct: 340 PGSYLPIPKGAANACIPSISSIG----TNVCDNELLHCQNGGTCHNN-----VRCLCPAA 390
Query: 132 FDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDC 168
+ G +C ++ + C C + G
Sbjct: 391 YT--GILC---EKLR----CEEAGSCGSDSGQGAPPH 418
Score = 38.3 bits (88), Expect = 0.003
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 10/78 (12%)
Query: 241 DINECQSNPCGVNA-TCIDTQGSYSCVCKEHYTGDPYQACSDIDECKAL--DKPCGLRAI 297
DI C ++A C+ +C C+ + TG D +CK +P
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGP------DCGKCKKNYQGRPWS-PGS 342
Query: 298 CENTVPGFNCLCPKGYSG 315
G C S
Sbjct: 343 YLPIPKGAANACIPSISS 360
Score = 36.7 bits (84), Expect = 0.010
Identities = 20/115 (17%), Positives = 28/115 (24%), Gaps = 23/115 (20%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 81
Q P + + + C + C + C C N V
Sbjct: 333 YQGRPWS-PGSYLPIPKGAANACIPSISSIGTNVCDNELL------HCQNGGTCHNNV-- 383
Query: 82 FNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARG 136
CLCP Y+G CE++ C C G G
Sbjct: 384 -RCLCPAAYTGIL-----CEKLR----CEEAGSC----GSDSGQGAPPHGTHHHH 424
Score = 34.8 bits (79), Expect = 0.034
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 10/71 (14%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 304
Q P + + + C + C + C C N V
Sbjct: 333 YQGRPWS-PGSYLPIPKGAANACIPSISSIGTNVCDNELL------HCQNGGTCHNNV-- 383
Query: 305 FNCLCPKGYSG 315
CLCP Y+G
Sbjct: 384 -RCLCPAAYTG 393
Score = 27.1 bits (59), Expect = 9.1
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 16/76 (21%)
Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 300
++ + + C TC + C+C YTG + C C +
Sbjct: 364 NVCDNELLHCQNGGTCHNN---VRCLCPAAYTGILCEKLR-----------CEEAGSCGS 409
Query: 301 TVPGFNCLCPKGYSGK 316
P G
Sbjct: 410 D--SGQGAPPHGTHHH 423
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 45.9 bits (108), Expect = 6e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 17 VDINECQSN--PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
+ C +N C V+A C D + C C +YTG+ Q C + ++ R
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIF 61
Query: 75 CENTVPG--FNCLCPKGYSGKPDAKV 98
++ F Y +
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRS 87
Score = 45.9 bits (108), Expect = 6e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 240 VDINECQSN--PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 297
+ C +N C V+A C D + C C +YTG+ Q C + ++ R
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIF 61
Query: 298 CENTVPG--FNCLCPKGYSGKPDAKV 321
++ F Y +
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRS 87
Score = 41.7 bits (97), Expect = 2e-04
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 140 VDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVG 174
+ C C A+C + F C CV Y G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG 38
Score = 35.9 bits (82), Expect = 0.013
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 108 ECSSNFE-CVNNAECVDGL----CYCRPGFDARGSVCVDVDECQLG-DPCGPQAQCTNT- 160
C++N C +AEC D C C + G CV Q + ++
Sbjct: 7 TCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQ 66
Query: 161 -PGSFRCDCVEGYVGAPPRIKCKDVRW 186
P F + YV +
Sbjct: 67 VPVVFENTDLHSYVVMNHGRSYTAIST 93
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 46.6 bits (110), Expect = 8e-06
Identities = 31/167 (18%), Positives = 46/167 (27%), Gaps = 20/167 (11%)
Query: 21 ECQSNPCGVNATCIDTQGSYS---CVCKEHYTGD--------PYQACSDIDECKALDKPC 69
CQ+ + C + G++ C C + G + D + C
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVC 495
Query: 70 GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCR 129
R C C+C GK K CE D + C + +C G C C
Sbjct: 496 SQRGECLCG----QCVCHSSDFGKITGK-YCECDDFSCVRYKGEMCSGHGQCSCGDCLCD 550
Query: 130 PGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVE-GYVG 174
+ G C G C C++ G G
Sbjct: 551 SDW--TGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYG 595
Score = 38.1 bits (88), Expect = 0.003
Identities = 35/183 (19%), Positives = 48/183 (26%), Gaps = 36/183 (19%)
Query: 24 SNPCGVNATCIDTQGSYSCVCKEHYTGD---PYQACSDIDECKALDKPCGLRAICENTVP 80
C C+ Q CVC G Y C D + + C C
Sbjct: 492 QPVCSQRGECLCGQ----CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD- 546
Query: 81 GFNCLCPKGYSGKPDAKVACEQVDVTSECSSN--FECVNNAECVDGLCYC-RPGFD---- 133
CLC ++G C T C S+ C +C G C C +PG
Sbjct: 547 ---CLCDSDWTGY-----YCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTC 598
Query: 134 ----------ARGSVCVDVDECQLGDPCGPQ---AQCTNTPGSFRCDCVEGYVGAPPRIK 180
CV+ + G C + S + G K
Sbjct: 599 EKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCTYK 658
Query: 181 CKD 183
+D
Sbjct: 659 NED 661
Score = 28.5 bits (63), Expect = 3.6
Identities = 24/140 (17%), Positives = 33/140 (23%), Gaps = 23/140 (16%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 81
+ C + C C+C +TG C+ GL
Sbjct: 531 YKGEMCSGHGQCSCGD----CLCDSDWTGY---YCNCTTRTDTCMSSNGLLCSGRGKCEC 583
Query: 82 FNCLC-PKGYSGK-----PDAKVACEQVDVTSECSSNF----------ECVNNAECVDGL 125
+C+C G G P AC EC E
Sbjct: 584 GSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVK 643
Query: 126 CYCRPGFDARGSVCVDVDEC 145
G DA + D+C
Sbjct: 644 ELKDTGKDAVNCTYKNEDDC 663
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 40.5 bits (94), Expect = 7e-05
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 2/83 (2%)
Query: 20 NECQSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
++C NA C G+ C + + C+ + C A C
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 79 VPG-FNCLCPKGYSGKPDAKVAC 100
C C K S V C
Sbjct: 71 DKKEVECKCTKEGSEPLFEGVFC 93
Score = 40.5 bits (94), Expect = 7e-05
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 2/83 (2%)
Query: 243 NECQSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 301
++C NA C G+ C + + C+ + C A C
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70
Query: 302 VPG-FNCLCPKGYSGKPDAKVAC 323
C C K S V C
Sbjct: 71 DKKEVECKCTKEGSEPLFEGVFC 93
Score = 33.5 bits (76), Expect = 0.021
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 98 VACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDP--CGPQA 155
++ + + N C + + C GF G CV + C P+A
Sbjct: 7 MSSAHKCIDTNVPENAACYRYLDGTE-EWRCLLGFKEVGGKCVPASITCEENNGGCAPEA 65
Query: 156 QCTNT-PGSFRCDCVEGY 172
+CT C C +
Sbjct: 66 ECTMDDKKEVECKCTKEG 83
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 43.5 bits (102), Expect = 7e-05
Identities = 30/160 (18%), Positives = 44/160 (27%), Gaps = 21/160 (13%)
Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
+ S C C+ Q C+C EC ++ +C
Sbjct: 476 RKDNNSIICSGLGDCVCGQ----CLCHTSDVPGKLI-YGQYCECDTINCERYNGQVCGGP 530
Query: 79 VPGF----NCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDA 134
G C C G+ G CE+ EC C +C C G+
Sbjct: 531 GRGLCFCGKCRCHPGFEGS---ACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGY-- 585
Query: 135 RGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
+ +C + C PCG C +G G
Sbjct: 586 QLPLCQECPGCP--SPCGKYISCAEC-----LKFEKGPFG 618
Score = 41.2 bits (96), Expect = 4e-04
Identities = 29/163 (17%), Positives = 38/163 (23%), Gaps = 14/163 (8%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
D + C C G C+ G Q C C
Sbjct: 433 DRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC 492
Query: 78 TVPGFNCLCPKGYSGKPDAK-VACEQVDVTSECSSNFECVNNA--ECVDGLCYCRPGFDA 134
CLC CE + E + C C G C C PGF+
Sbjct: 493 G----QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEG 548
Query: 135 RG---SVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
+ C + +C C+C GY
Sbjct: 549 SACQCERTTEGCLNPRRVECSGRGRCR----CNVCECHSGYQL 587
Score = 39.3 bits (91), Expect = 0.001
Identities = 28/157 (17%), Positives = 36/157 (22%), Gaps = 24/157 (15%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDK-PCGLRAICENT 78
CG + G C C + G Q + C + C R C
Sbjct: 520 ERYNGQVCGGPGRGLCFCGK--CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC- 576
Query: 79 VPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSV 138
C C GY C++ C S C C + G G
Sbjct: 577 ---NVCECHSGYQLP-----LCQE---CPGCPSP--CGKYISCAEC-LKFEKGP--FGKN 620
Query: 139 C-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
C QL + C C Y
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERDS---EGCWVAYTL 654
Score = 38.5 bits (89), Expect = 0.003
Identities = 21/149 (14%), Positives = 38/149 (25%), Gaps = 6/149 (4%)
Query: 27 CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLR-AICENTVPGFNCL 85
NA + +Y C T + ++ E +
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVI 406
Query: 86 CPKGYSGKPDAKVACE-QVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDE 144
G++ +V + + + C G+C C G+ G C +
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGY--IGKNCECQTQ 464
Query: 145 CQLGDPCGPQAQCTNTPG--SFRCDCVEG 171
+ + N S DCV G
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGLGDCVCG 493
Score = 37.8 bits (87), Expect = 0.005
Identities = 24/165 (14%), Positives = 42/165 (25%), Gaps = 15/165 (9%)
Query: 12 GVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL 71
V + + + I G V + + + C
Sbjct: 384 NVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDR----SLCHG 439
Query: 72 RAICENTVPGFNCLCPKGYSGK-----PDAKVACEQVDVTSECSSNFECVNNAECVDGLC 126
+ E + C C GY GK + + E + +++ C +CV G C
Sbjct: 440 KGFLECGI----CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQC 495
Query: 127 YCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEG 171
C + C+ + G R C G
Sbjct: 496 LCHTSDV--PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG 538
Score = 32.8 bits (74), Expect = 0.15
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 69 CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCY 127
A+ + ++ C G + + + C+ V + + + +
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVI 406
Query: 128 CRPGFDARGSVCVDVD-ECQLGDPCGPQAQCTN--TPGSFRCDCVEGYVGA 175
GF +V V EC+ D ++ C C C GY+G
Sbjct: 407 RALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGK 457
Score = 28.5 bits (63), Expect = 3.8
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 16/111 (14%)
Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
+PCG +C + ++ G CS L C+
Sbjct: 591 QECPGCPSPCGKYISCAEC-----LKFEKGPFGK---NCSAACPGLQLSNNPVKGRTCKE 642
Query: 78 TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAE-CVDGLCY 127
+ C Y+ + + + V ECV + C + L +
Sbjct: 643 RD---SEGCWVAYTLEQQDGMDRYLIYVDESR----ECVAGPDGCGENLYF 686
Score = 27.4 bits (60), Expect = 9.5
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 7/80 (8%)
Query: 238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDK-PCGLRA 296
+ ++ CG + G C C + G Q + C + C R
Sbjct: 515 DTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGSACQCERTTEGCLNPRRVECSGRG 572
Query: 297 ICENTVPGFNCLCPKGYSGK 316
C C C GY
Sbjct: 573 RCRC----NVCECHSGYQLP 588
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 37.8 bits (88), Expect = 2e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 140 VDVDECQLGDPCGPQAQ-------CTNTPGSFRCDCVEGYV 173
VD+DEC G + C N G + C C GY
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
Score = 31.7 bits (72), Expect = 0.030
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 58 DIDECKALDKPCGLRA------ICENTVPGFNCLCPKGYSGKPDAK 97
D+DEC + K +C N V G+ C C GY + D
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH 48
Score = 31.7 bits (72), Expect = 0.030
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 281 DIDECKALDKPCGLRA------ICENTVPGFNCLCPKGYSGKPDAK 320
D+DEC + K +C N V G+ C C GY + D
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH 48
Score = 31.7 bits (72), Expect = 0.031
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 17 VDINECQSNPCGVNA--------TCIDTQGSYSCVCKEHYT 49
VD++EC S C + G Y C C+ Y
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
Score = 31.7 bits (72), Expect = 0.031
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 240 VDINECQSNPCGVNA--------TCIDTQGSYSCVCKEHYT 272
VD++EC S C + G Y C C+ Y
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 37.8 bits (88), Expect = 5e-04
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP- 80
Q + + + + C C + C + C C+ +
Sbjct: 15 YQQHQSWLR-PVLRSNRVEYCWCNSGRAQC---HSVPVKSCS--EPRCFNGGTCQQALYF 68
Query: 81 -GFNCLCPKGYSGK 93
F C CP+G++GK
Sbjct: 69 SDFVCQCPEGFAGK 82
Score = 37.8 bits (88), Expect = 5e-04
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP- 303
Q + + + + C C + C + C C+ +
Sbjct: 15 YQQHQSWLR-PVLRSNRVEYCWCNSGRAQC---HSVPVKSCS--EPRCFNGGTCQQALYF 68
Query: 304 -GFNCLCPKGYSGK 316
F C CP+G++GK
Sbjct: 69 SDFVCQCPEGFAGK 82
Score = 36.3 bits (84), Expect = 0.001
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 17 VDINECQSNPCGVNATCIDT--QGSYSCVCKEHYTGD 51
V + C C TC + C C E + G
Sbjct: 46 VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 82
Score = 36.3 bits (84), Expect = 0.001
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 240 VDINECQSNPCGVNATCIDT--QGSYSCVCKEHYTGD 274
V + C C TC + C C E + G
Sbjct: 46 VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 82
Score = 34.4 bits (79), Expect = 0.008
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 126 CYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNT--PGSFRCDCVEGYVG 174
C+C G V V C C C F C C EG+ G
Sbjct: 34 CWCNSGRA--QCHSVPVKSCS-EPRCFNGGTCQQALYFSDFVCQCPEGFAG 81
Score = 32.8 bits (75), Expect = 0.029
Identities = 24/100 (24%), Positives = 30/100 (30%), Gaps = 27/100 (27%)
Query: 39 SYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
SY +C++ T YQ LR + + C C G +
Sbjct: 1 SYQVICRDEKTQMIYQQH-----------QSWLRPVLRSNR-VEYCWCNSGRAQ------ 42
Query: 99 ACEQVDVTSECSSNFECVNNAECVDGL------CYCRPGF 132
C V V CS C N C L C C GF
Sbjct: 43 -CHSVPV-KSCSEP-RCFNGGTCQQALYFSDFVCQCPEGF 79
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 40.2 bits (93), Expect = 6e-04
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 142 VDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
V+EC C CTN+ G+F+C C GY P R CK +
Sbjct: 1 VNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKAL 41
Score = 36.0 bits (82), Expect = 0.015
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
+NEC + C +++G++ C C+ Y P + + + I +
Sbjct: 1 VNECAEEG-YCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 59
Query: 79 VPGFNCLCPKGYSGKPDA 96
A
Sbjct: 60 PHRSEYTLLLNNLENAIA 77
Score = 36.0 bits (82), Expect = 0.015
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 301
+NEC + C +++G++ C C+ Y P + + + I +
Sbjct: 1 VNECAEEG-YCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 59
Query: 302 VPGFNCLCPKGYSGKPDA 319
A
Sbjct: 60 PHRSEYTLLLNNLENAIA 77
Score = 29.8 bits (66), Expect = 1.4
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 8/125 (6%)
Query: 59 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNN 118
++EC + C N+ F C C GY +PD + C+ +
Sbjct: 1 VNEC---AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIR 56
Query: 119 AECVDGLCYCRPGFDARGSVCVDVDECQ----LGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
Y + ++ +D + D + N GS + V +
Sbjct: 57 QVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 116
Query: 175 APPRI 179
+P +
Sbjct: 117 SPGGL 121
Score = 29.5 bits (65), Expect = 1.4
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 282 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
++EC + C N+ F C C GY +PD +
Sbjct: 1 VNEC---AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRR 36
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 39.8 bits (92), Expect = 0.001
Identities = 7/50 (14%), Positives = 10/50 (20%), Gaps = 1/50 (2%)
Query: 12 GVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEH-YTGDPYQACSDID 60
G E + C C C C + G +
Sbjct: 183 GGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY 232
Score = 39.1 bits (90), Expect = 0.002
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 12/79 (15%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
V + + P +D + S C +E C +C
Sbjct: 157 VRVQSSLALPVDSGEVKLDDEPPNSGGG---------SPCEAGEEG--EGGVCLNGGVCS 205
Query: 77 NTVPGFNCLCPK-GYSGKP 94
C C + G+ GK
Sbjct: 206 VVDDQAVCDCSRTGFRGKD 224
Score = 39.1 bits (90), Expect = 0.002
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 12/79 (15%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
V + + P +D + S C +E C +C
Sbjct: 157 VRVQSSLALPVDSGEVKLDDEPPNSGGG---------SPCEAGEEG--EGGVCLNGGVCS 205
Query: 300 NTVPGFNCLCPK-GYSGKP 317
C C + G+ GK
Sbjct: 206 VVDDQAVCDCSRTGFRGKD 224
Score = 38.3 bits (88), Expect = 0.003
Identities = 6/47 (12%), Positives = 9/47 (19%), Gaps = 1/47 (2%)
Query: 238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEH-YTGDPYQACSDID 283
E + C C C C + G +
Sbjct: 186 PCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY 232
Score = 36.7 bits (84), Expect = 0.009
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY 53
CQ + C C+ +SC C P
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 1051
Score = 36.7 bits (84), Expect = 0.009
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY 276
CQ + C C+ +SC C P
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 1051
Score = 36.7 bits (84), Expect = 0.010
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 112 NFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVE- 170
+ + P GS C +E + G C C+ CDC
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGE-GGVCLNGGVCSVVDDQAVCDCSRT 218
Query: 171 GYVGAPPRIKCKDVRWEFN 189
G+ G ++ F
Sbjct: 219 GFRGKDCSQGKEEYIATFK 237
Score = 34.0 bits (77), Expect = 0.069
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKE-HYTGDPYQACSDIDEC 285
+R C SNPC N C D Y C C Y G + + +
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSY 663
Score = 34.0 bits (77), Expect = 0.071
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKE-HYTGDPYQACSDIDEC 62
C SNPC N C D Y C C Y G + + +
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSY 663
Score = 32.1 bits (72), Expect = 0.30
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 139 CVDVDECQLGDPCGPQAQCTNTPGSFRCDC-VEGYVGAPPRIKCKDVRWEFNVTLLFYET 197
C D C Q C F CDC + + G + + Y+
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 1072
Query: 198 DYLHSVASDISDI 210
++ +
Sbjct: 1073 PPNDRPSTRADRL 1085
Score = 32.1 bits (72), Expect = 0.30
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 128 CRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRW- 186
+ + S + + L +PC C + + CDC + V
Sbjct: 604 VQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSY 663
Query: 187 EFNVTLLFYETDYLHSVASDIS 208
+ ++ + +H+ A D+S
Sbjct: 664 DGSMFMKIQLPVVMHTEAEDVS 685
Score = 27.1 bits (59), Expect = 9.6
Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 4/67 (5%)
Query: 29 VNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPK 88
++ D + + C L PC +C + + C C
Sbjct: 591 IDGQSKDIRQMAEVQSTAGVKPSC--SRETAKPC--LSNPCKNNGMCRDGWNRYVCDCSG 646
Query: 89 GYSGKPD 95
Sbjct: 647 TGYLGRS 653
Score = 27.1 bits (59), Expect = 9.6
Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 4/67 (5%)
Query: 252 VNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPK 311
++ D + + C L PC +C + + C C
Sbjct: 591 IDGQSKDIRQMAEVQSTAGVKPSC--SRETAKPC--LSNPCKNNGMCRDGWNRYVCDCSG 646
Query: 312 GYSGKPD 318
Sbjct: 647 TGYLGRS 653
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 38.1 bits (88), Expect = 0.003
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 70
CQ + C C+ +SC C P C+D K G
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL--CNDPGTTYIFSKGGG 234
Score = 38.1 bits (88), Expect = 0.003
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 293
CQ + C C+ +SC C P C+D K G
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL--CNDPGTTYIFSKGGG 234
Score = 32.7 bits (74), Expect = 0.14
Identities = 14/75 (18%), Positives = 16/75 (21%)
Query: 139 CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETD 198
C D C Q C F CDC P
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Query: 199 YLHSVASDISDILTI 213
+ S +D L I
Sbjct: 241 PPNDRPSTRADRLAI 255
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 34.4 bits (78), Expect = 0.008
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 17 VDINECQSNPCGVNATC-IDTQGSYSCVCKEHYTGDPYQACSDIDE--CKALDKPCGLRA 73
+ ++C C N+ C C C +Y + + C + C + C A
Sbjct: 2 ISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDK-CVENPNPTCNENNGGCDADA 60
Query: 74 ICENTVPG-----FNCLCPKGYSGKPDAKVAC 100
C G C C K S + C
Sbjct: 61 KCTEEDSGSNGKKITCECTKPDSYPLFDGIFC 92
Score = 34.4 bits (78), Expect = 0.008
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 240 VDINECQSNPCGVNATC-IDTQGSYSCVCKEHYTGDPYQACSDIDE--CKALDKPCGLRA 296
+ ++C C N+ C C C +Y + + C + C + C A
Sbjct: 2 ISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDK-CVENPNPTCNENNGGCDADA 60
Query: 297 ICENTVPG-----FNCLCPKGYSGKPDAKVAC 323
C G C C K S + C
Sbjct: 61 KCTEEDSGSNGKKITCECTKPDSYPLFDGIFC 92
Score = 27.8 bits (61), Expect = 1.8
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 104 DVTSECSSNFECVNNAECVDGL-----CYCRPGFDARGSVCVDVDE--CQLGDP-CGPQA 155
+++ +C N+ C L C C + G CV+ C + C A
Sbjct: 1 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADA 60
Query: 156 QCTNTPGS-----FRCDCVEGYVGA 175
+CT C+C +
Sbjct: 61 KCTEEDSGSNGKKITCECTKPDSYP 85
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 35.3 bits (81), Expect = 0.011
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 129 RPGFDARGS-VCVDVDECQLGDP--CGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD 183
+P D+DECQ+ C N G F C C GYV + C +
Sbjct: 110 KPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 28.4 bits (63), Expect = 2.0
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 17 VDINECQSNPC---GVNATCIDTQGSYSCVCKEHYT 49
DI+ECQ P + C + G + C C+ Y
Sbjct: 122 EDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
Score = 28.4 bits (63), Expect = 2.0
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 240 VDINECQSNPC---GVNATCIDTQGSYSCVCKEHYT 272
DI+ECQ P + C + G + C C+ Y
Sbjct: 122 EDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
Score = 28.4 bits (63), Expect = 2.2
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 276 YQACSDIDECKALDKPC-GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQE 326
+ A DIDEC+ C N + GF C C GY + + C ++
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT-CSEQ 168
Score = 28.0 bits (62), Expect = 2.8
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 53 YQACSDIDECKALDKPC-GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQ 102
+ A DIDEC+ C N + GF C C GY + + EQ
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 35.2 bits (81), Expect = 0.012
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 137 SVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD 183
V D++EC C N G + C C Y C
Sbjct: 112 YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 33.9 bits (77), Expect = 0.012
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 20 NECQSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDIDE--CKALDKPCGLRAICE 76
+ C NA C G+ C ++ D + C CK + C A C+
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGK-CVPAPNMTCKDKNGGCAPEAECK 63
Query: 77 NTVPG-FNCLCPKGYSGKPDAKVAC 100
C C K S V C
Sbjct: 64 MNDKNEIVCKCTKEGSEPLFEGVFC 88
Score = 33.9 bits (77), Expect = 0.012
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 243 NECQSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDIDE--CKALDKPCGLRAICE 299
+ C NA C G+ C ++ D + C CK + C A C+
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGK-CVPAPNMTCKDKNGGCAPEAECK 63
Query: 300 NTVPG-FNCLCPKGYSGKPDAKVAC 323
C C K S V C
Sbjct: 64 MNDKNEIVCKCTKEGSEPLFEGVFC 88
Score = 31.6 bits (71), Expect = 0.078
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 105 VTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGD---PCGPQAQCT-NT 160
+ + N C + + C F CV D C P+A+C N
Sbjct: 8 IDTNVPENAACYRYLDGTE-EWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMND 66
Query: 161 PGSFRCDCVEGY 172
C C +
Sbjct: 67 KNEIVCKCTKEG 78
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 36.0 bits (82), Expect = 0.016
Identities = 63/313 (20%), Positives = 94/313 (30%), Gaps = 53/313 (16%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 81
+ C + C+D GS C G C+ C C CE+
Sbjct: 120 SRQFVCDSDRDCLD--GSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDE 176
Query: 82 FNCLCPKGYSGKPDAKVACEQVDVT---SEC-SSNFECVNNAECVDG-------LCYCRP 130
+ C Y + D+ C + EC S++ C +C D + CRP
Sbjct: 177 WPQRCRGLYVFQGDS-SPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRP 235
Query: 131 GFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNV 190
C D + C + C + C V G P + KC
Sbjct: 236 DE----FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEG-PNKFKCHS-----GE 285
Query: 191 TLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPC 250
+ + + D SD + NEC N
Sbjct: 286 CITLDKVCNMARDCRDWSD-------------------------EPIKECGTNECLDNNG 320
Query: 251 GVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCP 310
G + C D + Y C+C + + + C DIDEC P +C N G+ C C
Sbjct: 321 GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLEGGYKCQCE 377
Query: 311 KGYSGKPDAKVAC 323
+G+ P K
Sbjct: 378 EGFQLDPHTKACK 390
Score = 34.8 bits (79), Expect = 0.042
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC P +C N
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLE 369
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSN 112
G+ C C +G+ P K + +N
Sbjct: 370 GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN 402
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 32.8 bits (75), Expect = 0.066
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
C + C + C++T +Y+C C ++G
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 32.8 bits (75), Expect = 0.066
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
C + C + C++T +Y+C C ++G
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 31.7 bits (72), Expect = 0.15
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 149 DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C +C T ++ C C G+ G KC+ +
Sbjct: 125 TSCSGHGECVETINNYTCKCDPGFSGL----KCEQI 156
Score = 29.3 bits (66), Expect = 0.87
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 68 PCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQV 103
C C T+ + C C G+SG CEQ+
Sbjct: 126 SCSGHGECVETINNYTCKCDPGFSGLK-----CEQI 156
Score = 27.8 bits (62), Expect = 2.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 291 PCGLRAICENTVPGFNCLCPKGYSG 315
C C T+ + C C G+SG
Sbjct: 126 SCSGHGECVETINNYTCKCDPGFSG 150
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 33.8 bits (77), Expect = 0.069
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 23 QSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDID 60
+ C +A C+ + GS SCVC + G+ D D
Sbjct: 25 SPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTD 63
Score = 33.8 bits (77), Expect = 0.069
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 246 QSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDID 283
+ C +A C+ + GS SCVC + G+ D D
Sbjct: 25 SPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTD 63
Score = 30.3 bits (68), Expect = 0.98
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 48 YTGDPYQACSDIDECKALDK-PCGLRAICENTVPG-FNCLCPKGYSGKPDA 96
P S C C A C G +C+C G++G
Sbjct: 7 VPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGIL 57
Score = 30.3 bits (68), Expect = 0.98
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 271 YTGDPYQACSDIDECKALDK-PCGLRAICENTVPG-FNCLCPKGYSGKPDA 319
P S C C A C G +C+C G++G
Sbjct: 7 VPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGIL 57
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 33.5 bits (75), Expect = 0.095
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 104 DVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGS 163
V C + +C+ G+C+C G+ + V + + +P
Sbjct: 187 GVYISEPCPSYCSGHGDCISGVCFCDLGY--TAAQGTCVSNTPNHSEMFDRFEGKLSPLW 244
Query: 164 FRCDCVEGYVGAPPRIKCKDVRWE 187
++ + G + + +
Sbjct: 245 YKITGGQVGTGCGTLNDGRSLYFN 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 32.3 bits (73), Expect = 0.17
Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 232 DAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 291
+ + + E +P + TQ C+ + C +
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSN--GGCQYL--------- 283
Query: 292 CGLRAICENTVPGFNCLCPKGYSGKPDAK 320
C P F C CP G D +
Sbjct: 284 CLPAPQINPHSPKFTCACPDGMLLARDMR 312
Score = 31.2 bits (70), Expect = 0.45
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 11/74 (14%)
Query: 24 SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFN 83
+P + TQ C+ + C + C P F
Sbjct: 250 LSPEDMVLFHNLTQPRGVNWCERTTLSN--GGCQYL---------CLPAPQINPHSPKFT 298
Query: 84 CLCPKGYSGKPDAK 97
C CP G D +
Sbjct: 299 CACPDGMLLARDMR 312
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 31.7 bits (72), Expect = 0.18
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALD 66
CQ C + C++ +Y+C C Y G C + L
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGP---QCQFVQVDPRLI 163
Score = 31.7 bits (72), Expect = 0.18
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALD 289
CQ C + C++ +Y+C C Y G C + L
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGP---QCQFVQVDPRLI 163
Score = 30.5 bits (69), Expect = 0.45
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 149 DPCGPQAQCTNTPGSFRCDCVEGYVG 174
C +C ++ C+C GY G
Sbjct: 125 WSCSGHGECVEIINNYTCNCDVGYYG 150
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 32.4 bits (73), Expect = 0.19
Identities = 27/176 (15%), Positives = 40/176 (22%), Gaps = 16/176 (9%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 81
+ P ++ C+C+ + G + C D G +
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNC 320
Query: 82 FNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL-----------CYCRP 130
+ V C N N +C C P
Sbjct: 321 NEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP 380
Query: 131 GF-DARGSVCVDVDECQLGDPCGPQA-QCTNTPG--SFRCD-CVEGYVGAPPRIKC 181
D GS + + G A QC RCD C EG+
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY 436
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 32.3 bits (72), Expect = 0.21
Identities = 23/161 (14%), Positives = 35/161 (21%), Gaps = 16/161 (9%)
Query: 24 SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFN 83
+ C V +C + YS + EC L + N
Sbjct: 439 AASCSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRIT 498
Query: 84 CLCPKG-----------YSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGF 132
P D + +V C + CV G C C +
Sbjct: 499 LPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQW 558
Query: 133 -----DARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDC 168
D + + Q T + G C
Sbjct: 559 GGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVC 599
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 28.9 bits (65), Expect = 0.34
Identities = 8/28 (28%), Positives = 8/28 (28%)
Query: 157 CTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C S C C GY A C
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPT 42
Score = 27.0 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 32 TCIDTQGSYSCVCKEHYT-GDPYQACSDIDECKALDKPCG 70
C + Q S C C YT D +AC PCG
Sbjct: 14 FCHEEQNSVVCSCARGYTLADNGKACIPTGPY-----PCG 48
Score = 27.0 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 255 TCIDTQGSYSCVCKEHYT-GDPYQACSDIDECKALDKPCG 293
C + Q S C C YT D +AC PCG
Sbjct: 14 FCHEEQNSVVCSCARGYTLADNGKACIPTGPY-----PCG 48
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 30.1 bits (68), Expect = 0.53
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 149 DPCGPQAQCTNTPGSFRCDCVEGYVG 174
C Q +C T G++ C C G+ G
Sbjct: 125 MSCSKQGECLETIGNYTCSCYPGFYG 150
Score = 30.1 bits (68), Expect = 0.55
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC 62
CQ C C++T G+Y+C C + G C + +
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGP---ECEYVRDD 159
Score = 30.1 bits (68), Expect = 0.55
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC 285
CQ C C++T G+Y+C C + G C + +
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGP---ECEYVRDD 159
Score = 27.8 bits (62), Expect = 3.1
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 63 KALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE 108
D C + C T+ + C C G+ G CE V +
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGP-----ECEYVRDDDD 161
Score = 27.5 bits (61), Expect = 4.4
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 286 KALDKPCGLRAICENTVPGFNCLCPKGYSG 315
D C + C T+ + C C G+ G
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG 150
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 31.3 bits (70), Expect = 0.55
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
NEC N G + C D + Y C+C + + + C DIDEC P +C N
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLE 351
Query: 303 PGFNCLCPKGYSGKPDAKVACEQE 326
G+ C C +G+ P K
Sbjct: 352 GGYKCQCEEGFQLDPHTKACKAVG 375
Score = 30.9 bits (69), Expect = 0.58
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
NEC N G + C D + Y C+C + + + C DIDEC P +C N
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLE 351
Query: 80 PGFNCLCPKGYSGKPDAKVAC 100
G+ C C +G+ P K
Sbjct: 352 GGYKCQCEEGFQLDPHTKACK 372
Score = 30.2 bits (67), Expect = 1.1
Identities = 21/146 (14%), Positives = 35/146 (23%), Gaps = 3/146 (2%)
Query: 27 CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLC 86
+ CI C + + + LD G +C + G+ CLC
Sbjct: 262 KCHSGECIT--LDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC 319
Query: 87 PKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQ 146
P G+ + + + + + CVN C D C V
Sbjct: 320 PDGFQ-LVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 378
Query: 147 LGDPCGPQAQCTNTPGSFRCDCVEGY 172
T +
Sbjct: 379 YLFFTNRHEVRKMTLDRSEYTSLIPN 404
Score = 27.5 bits (60), Expect = 7.3
Identities = 29/141 (20%), Positives = 41/141 (29%), Gaps = 24/141 (17%)
Query: 27 CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLC 86
C + C+D GS C G C+ C C CE+ + C
Sbjct: 107 CDSDRDCLD--GSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRC 163
Query: 87 PKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQ 146
Y + D +S CS+ + EC+ C G D C+
Sbjct: 164 RGLYVFQGD----------SSPCSAFEFHCLSGECIHSSWRCDGGPD-----------CK 202
Query: 147 LGDPCGPQAQCTNTPGSFRCD 167
A T P F+C
Sbjct: 203 DKSDEENCAVATCRPDEFQCS 223
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 30.9 bits (69), Expect = 0.62
Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 6/128 (4%)
Query: 121 CVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIK 180
L Y S +EC + G F C C Y
Sbjct: 244 IQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRT 303
Query: 181 CKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIF-----SKHLKLFVIEDAKR 235
C F + + + DI+ IH + +L+ I+ +
Sbjct: 304 CSA-PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQN 362
Query: 236 NLNRVDIN 243
+ + +
Sbjct: 363 MIRKAQED 370
Score = 27.5 bits (60), Expect = 6.9
Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 2/150 (1%)
Query: 172 YVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIE 231
+G + D+ F +T + I + I HL +
Sbjct: 195 MLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDI 254
Query: 232 DAKRNLNRVDINECQSNPCGVNATCIDTQ-GSYSCVCKEHYTGDP-YQACSDIDECKALD 289
+ + NEC S+ + C+ G + C C HY+ + + CS
Sbjct: 255 LVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS 314
Query: 290 KPCGLRAICENTVPGFNCLCPKGYSGKPDA 319
+ + + + + + P A
Sbjct: 315 QKSAINRMVIDEQQSPDIILPIHSLRNVRA 344
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 30.7 bits (68), Expect = 0.77
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 83 NCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCR---PGFDARGSVC 139
C P+ GK + + C V + + + C+ R GF V
Sbjct: 392 QCEGPEKREGKAEDRGQCNHVRINQTVTFWVS-LQATHCLPEPHLLRLRALGFSEELIVE 450
Query: 140 VDVD-ECQLGDPCGPQAQCTNTPGSF---RCDCVEGYVG 174
+ +C D C++ G C C G +G
Sbjct: 451 LHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLG 489
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 29.6 bits (66), Expect = 1.2
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 74 ICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFD 133
C+ G NC C + + +C + + + CS +CV G C C
Sbjct: 110 RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICS------GLGDCVCGQCLCHTSDV 163
Query: 134 ARGSVCVDVDEC-------QLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
+ EC G CG + G +C C G+ G+
Sbjct: 164 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGS 210
Score = 28.4 bits (63), Expect = 2.9
Identities = 21/121 (17%), Positives = 25/121 (20%), Gaps = 12/121 (9%)
Query: 20 NECQSNPCGVNATCID-----TQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
+ C G C+ G Q C
Sbjct: 91 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGD 150
Query: 75 CENTVPGFNCLCPKGYSGKPDAK-VACEQVDVTSECSSNFECV--NNAECVDGLCYCRPG 131
C CLC CE + E + C C G C C PG
Sbjct: 151 CVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPG 206
Query: 132 F 132
F
Sbjct: 207 F 207
Score = 26.9 bits (59), Expect = 9.5
Identities = 11/65 (16%), Positives = 17/65 (26%)
Query: 107 SECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRC 166
+ C G+C C G+ + C + + S
Sbjct: 90 DQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLG 149
Query: 167 DCVEG 171
DCV G
Sbjct: 150 DCVCG 154
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/139 (10%), Positives = 26/139 (18%), Gaps = 13/139 (9%)
Query: 41 SCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC 100
S K Q + + + C E V + P +
Sbjct: 41 SAQAKALSKH---QDFNSAVQLV--ENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEE 95
Query: 101 EQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNT 160
+ T + ++G E CG +
Sbjct: 96 AVEEETGDGLDEDSD----RAIEGATATSEYQTFFNPATFGSGEA----DCGLRPLFEKK 147
Query: 161 PGSFRCDCVEGYVGAPPRI 179
+ + RI
Sbjct: 148 SLEDKTERELLESYIDGRI 166
Score = 28.3 bits (63), Expect = 3.8
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 3/83 (3%)
Query: 235 RNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL 294
++ + + N C + Y + C + E + D GL
Sbjct: 49 KHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGD---GL 105
Query: 295 RAICENTVPGFNCLCPKGYSGKP 317
+ + G P
Sbjct: 106 DEDSDRAIEGATATSEYQTFFNP 128
Score = 28.3 bits (63), Expect = 4.1
Identities = 10/78 (12%), Positives = 17/78 (21%), Gaps = 3/78 (3%)
Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
+ N C + Y + C + E + D GL +
Sbjct: 54 NSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGD---GLDEDSD 110
Query: 77 NTVPGFNCLCPKGYSGKP 94
+ G P
Sbjct: 111 RAIEGATATSEYQTFFNP 128
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 26.9 bits (60), Expect = 1.4
Identities = 8/28 (28%), Positives = 8/28 (28%)
Query: 157 CTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
C RC C GYV C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVST 39
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.4 bits (65), Expect = 1.7
Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 21/132 (15%)
Query: 195 YETDYLHSVASDISDILTIIHEFSR----IFSKHLKLFVIEDAKRNLNRVDINECQSN-- 248
+TD + + +D + ++ + ++ + +R++ RV +
Sbjct: 498 AKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVI 557
Query: 249 PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCL 308
+ + V + + CS + C G C
Sbjct: 558 IDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHL---------------CLYRPQGLRCA 602
Query: 309 CPKGYSGKPDAK 320
CP G+ D K
Sbjct: 603 CPIGFELISDMK 614
Score = 28.2 bits (62), Expect = 4.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 74 ICENTVPGFNCLCPKGYSGKPDAK 97
+C G C CP G+ D K
Sbjct: 591 LCLYRPQGLRCACPIGFELISDMK 614
Score = 27.5 bits (60), Expect = 6.9
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 157 CTNTPGSFRCDCVEGYVGAPPRIKC 181
C P RC C G+ C
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKTC 616
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 28.9 bits (65), Expect = 1.9
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 143 DECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
+EC G Q C S+ C C +GY +C
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPH 44
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 26.7 bits (58), Expect = 2.2
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 22 CQSNPCGVNA--TCIDTQGSYSCVCKEHY 48
C SNPCG A TC +T Y C C + Y
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
Score = 26.7 bits (58), Expect = 2.2
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 245 CQSNPCGVNA--TCIDTQGSYSCVCKEHY 271
C SNPCG A TC +T Y C C + Y
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 28.7 bits (63), Expect = 2.3
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 39 SYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
C C+ C + CG C+ G NC C + +
Sbjct: 181 LPQCECRCRDQSRDRSLCHGKGFLE-----CG-ICRCDTGYIGKNCECQTQGRSSQELEG 234
Query: 99 ACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSV 138
+C + + + CS +CV G C C +
Sbjct: 235 SCRKDNNSIICSGLG------DCVCGQCLCHTSDVPGKLI 268
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 29.2 bits (64), Expect = 2.6
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 16/99 (16%)
Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
++C PC + Q C E C + C+ L ++
Sbjct: 61 SKC-LEPCKESGDLRKHQCQSFC---EPLFPKKSYEC--LTSCEFLKYILLVKQ------ 108
Query: 80 PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNN 118
CP A E +V +ECS +C +N
Sbjct: 109 ----GDCPAPEKASGFAAACVESCEVDNECSGVKKCCSN 143
Score = 27.2 bits (59), Expect = 8.8
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 1/73 (1%)
Query: 99 ACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCT 158
S C N+ +C L C+ D R C E + +
Sbjct: 38 ISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPL-FPKKSYECLTS 96
Query: 159 NTPGSFRCDCVEG 171
+ +G
Sbjct: 97 CEFLKYILLVKQG 109
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 28.4 bits (63), Expect = 3.4
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 30 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKG 89
N C T C C + GD + +C + C +C V CLC KG
Sbjct: 401 NGYCTPTGK---CCCSPGWEGDFCRTA----KC---EPACRHGGVC---VRPNKCLCKKG 447
Query: 90 YSGKPDAKVACEQVD 104
Y G CEQVD
Sbjct: 448 YLGP-----QCEQVD 457
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 25.8 bits (56), Expect = 5.2
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGY----SGKPDAKVACEQVDVTSECSSN 112
SD++EC + + C C N G+ CL + C
Sbjct: 1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPPPVPPAQHPNPCPPG 60
Query: 113 FECVNNAECVD 123
+E + CVD
Sbjct: 61 YEPDDQDSCVD 71
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 27.9 bits (62), Expect = 5.6
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 104 DVTSECSSNFECVNNAECVDGLCY--CRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTP 161
+ + +E V A C G D VC+ C + NT
Sbjct: 11 NASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYHRCDGVTNTVTPEEVINTT 70
Query: 162 GSFRCDC 168
G D
Sbjct: 71 GEGIFDI 77
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 27.9 bits (62), Expect = 5.8
Identities = 12/106 (11%), Positives = 28/106 (26%), Gaps = 5/106 (4%)
Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP- 80
+ + + + S C + D + + A + +C N V
Sbjct: 269 IKKSKALSGFSLQSCRHSIPVFCHSSFYHDT-DFLGEELDIVAAKSHEACQKLCTNAVRC 327
Query: 81 GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLC 126
F P + + + S S + ++ + G
Sbjct: 328 QFFTYTP---AQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYT 370
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 26.9 bits (59), Expect = 9.4
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 109 CSSNFECVNNAECVDGLCYCRPGFDARGSVCVDV-DECQLGDPC-GPQAQCTN 159
++ + + ++C G C + F G+ C EC + C G ++C
Sbjct: 239 DAATCKLKSGSQCGHGDCCEQCKFSKSGTECRASMSECDPAEHCTGQSSECPA 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.461
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,224,117
Number of extensions: 320002
Number of successful extensions: 2093
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1339
Number of HSP's successfully gapped: 587
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)