BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2859
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G+TPL AAY G+ +I ++LL HGADVN+ G++ LH A
Sbjct: 54 IVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNA-YDRAGWTPLHLA 112
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
ALSG+ ++ LL GA A +++G TA
Sbjct: 113 ALSGQLEIVEVLLKHGADVNAQDALGLTA 141
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D++G+TPL AA G +I ++LL +GADVN+ G + LH
Sbjct: 19 DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLH 77
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
AA G ++ LL GA A + G T +AA
Sbjct: 78 LAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL 114
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ YD G TPL AA G +I ++LL HGADVN+ + G +A +
Sbjct: 87 IVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA-QDALGLTAFDIS 145
Query: 82 ALSGKDDVCACL 93
G++D+ L
Sbjct: 146 INQGQEDLAEIL 157
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ ++G + LH AA +G+ ++ LL GA A+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNA-TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 104 NSVGRTASQMAAF 116
+S G T +AA+
Sbjct: 69 DSAGITPLHLAAY 81
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++N V KLL E V+ D++G TPL AA G+ ++ +LLL+ GADVN+ + ++G
Sbjct: 10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNG 68
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ LH AA +G +V LL AGA A + GRT +AA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+G TPL AA G+ ++ +LLL+ GADVN+ + ++G + LH AA +G +V LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 99 KSYATNSVGRTASQMAA 115
A + GRT +AA
Sbjct: 60 DVNAKDKNGRTPLHLAA 76
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++N V KLL E V+ D++G TPL AA G+ ++ +LLL+ GADVN+ + ++G
Sbjct: 43 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNG 101
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
+ LH AA +G +V LL AGA
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
G + + + D V+ L+ E+ V+ D G TPL +AA +G+K+I +LL+ GADV
Sbjct: 5 GKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 67 NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
N+ + G + LH+AA G ++ L+S GA A +S GRT AA
Sbjct: 64 NA-KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 111
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
+G + +K + KLL V+ D G TPL +AA +G+K+I +LL+ GAD
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
VN+ + G + LH+AA G ++ L+S GA ++S GRT +A
Sbjct: 96 VNA-KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
G + + + D V+ L+ E+ V+ D G TPL HAA G+K++ +LL+ GADV
Sbjct: 5 GKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 67 NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
N+ + G + LH AA +G +V L+S GA A +S GRT AA
Sbjct: 64 NA-KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V KLL V+ D G TPL HAA G+K++ +LL+ GADVN+ + G + LH A
Sbjct: 52 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHA 110
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
A +G +V L+S GA ++S GRT +A
Sbjct: 111 AENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ +D +G TPL AA G+ +I ++LL HGADVN+ +E G++ LH A
Sbjct: 62 IVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE-GFTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 AYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AA G+ +I ++LL +GADVN+ + +G + LH
Sbjct: 27 DDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-YGATPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
AA +G ++ LL GA A + G T +AA+
Sbjct: 86 LAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAY 122
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ G++ LH AA +G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 104 NSVGRTASQMAA 115
++ G T +AA
Sbjct: 77 DNYGATPLHLAA 88
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ +D+ G TPL AA+ G+ +I ++LL HGADVN+ R G++ LH
Sbjct: 27 DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA-RDTDGWTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA +G ++ LL GA A ++ G T +AA
Sbjct: 86 LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ D G TPL AA G+ +I ++LL +GADVN+ + +G + LH A
Sbjct: 62 IVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA-QDAYGLTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 ADRGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D +G+TPL AA +G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 95 IVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + G + LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 104 NSVGRTASQMAA 115
++ G T +AA
Sbjct: 77 DTDGWTPLHLAA 88
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G TPL AA KG+ +I ++LL HGADVN+ + G + LH
Sbjct: 27 DDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA-DKMGDTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AAL G ++ LL GA AT++ G T +AA
Sbjct: 86 LAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ D+ G TPL AA G+ +I ++LL +GADVN+ +G++ LH A
Sbjct: 62 IVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA-TDTYGFTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A +G ++ LL GA A + G+TA
Sbjct: 121 ADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + G + LH AA+ G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 104 NSVGRTASQMAAF 116
+ +G T +AA
Sbjct: 77 DKMGDTPLHLAAL 89
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D +G TPL AA G+ +I ++LL +GADVN+ + + G +A +
Sbjct: 95 IVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
++L ++ V+ D+ G TPL AAY+G+ +I ++LL +GADVN+ ++ GY+ LH AA
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ-GYTPLHLAAE 122
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTA 110
G ++ LL GA A + G+TA
Sbjct: 123 DGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G+TPL G+ +I ++LL + ADVN+ + G++ LH
Sbjct: 27 DDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL GA A + G T +AA
Sbjct: 86 LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA 121
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G TPL AA G+ +I ++LL +GADVN+ + + G +A +
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ G + LH +G ++ LL A A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDW-FGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 104 NSVGRTASQMAAF 116
+ G T +AA+
Sbjct: 77 DKSGWTPLHLAAY 89
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
G + + + D V+ LL E+ + D G TPL +AA G+K+I +LLL GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP 63
Query: 67 NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
N+ + G + LH+AA +G ++ LLS GA A +S GRT AA
Sbjct: 64 NA-KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
+G + ++N + KLL + D G TPL +AA G+K+I +LLL GAD
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
N+ + G + LH+AA +G ++ LLS GA ++S GRT +A
Sbjct: 96 PNA-KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AAY G+ +I ++LL HGADV++ GY+ LH
Sbjct: 27 DDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL GA A +S G T +AA
Sbjct: 86 LAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H VD D G TPL AAY G+ +I ++LL +GADVN+ + G + LH A
Sbjct: 62 IVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD-GMTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 AKWGYLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + G + LH AA SG ++ LL GA A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 104 NSVGRTASQMAAF 116
+ G T +AA+
Sbjct: 77 DVFGYTPLHLAAY 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
G + + + D V+ LL E+ V+ D G TPL AA G+K++ +LLL GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP 63
Query: 67 NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
N+ + G + LH AA +G +V LLS GA A +S G+T +AA
Sbjct: 64 NA-KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA 111
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
+G ++N V KLL + D G TPL AA G+K++ +LLL GAD
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
N+ + G + LH AA +G +V LLS GA ++S GRT +A
Sbjct: 96 PNA-KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G+TPL AA G+ +I ++LL HGADV++ +G++ LH
Sbjct: 27 DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA-DVYGFTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA++G ++ LL GA A + G T +AA
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H VD D +G TPL AA G+ +I ++LL +GADVN+ G + LH A
Sbjct: 62 IVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT-GSTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 ADEGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + G + LH AA+SG ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 104 NSVGRTASQMAAFV----VVAVINNYIA 127
+ G T +AA +V V+ Y A
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G+TPL AA +G+ +I ++LL HGADVN+ R G + LH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-RDIWGRTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
AA G ++ LL GA A + G+TA
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L A G ++L+ +GADVN+ + G + LH AA G ++ LL GA A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 104 NSVGRTASQMAAFV----VVAVINNYIA 127
+ GRT +AA V +V V+ Y A
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D GMTPL+ AA G+ +I ++LL +GADVN+ E G++ LH A
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME-GHTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A+ G ++ LL GA A + G+TA
Sbjct: 121 AMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AA+ G+ +I ++LL +GADVN+ H G + L
Sbjct: 27 DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA-GMTPLR 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AAL G ++ LL GA A + G T +AA
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ G++ LH AA +G ++ LL GA A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 104 NSVGRTASQMAAF 116
+ G T ++AA
Sbjct: 77 DHAGMTPLRLAAL 89
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G TPL AA G+ +I ++LL +GADVN+ + + G +A +
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ DE G+TPL AA G+ +I ++LL +GADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA-EDNFGITPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
AA+ G ++ LL GA A + G+TA
Sbjct: 86 LAAIRGHLEIVEVLLKHGADVNAQDKFGKTA 116
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G+TPL AA +G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 62 IVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNA-QDKFGKTAFDIS 120
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 121 IDNGNEDLAEIL 132
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ E G + LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 104 NSVGRTASQMAA 115
++ G T +AA
Sbjct: 77 DNFGITPLHLAA 88
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G+TPL AA +G+ +I ++LL +GADVN+ HG++ LH A
Sbjct: 62 IVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 AKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AA+ G+ +I ++LL +GADVN+ + G + LH
Sbjct: 27 DDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL GA A++S G T +AA
Sbjct: 86 LAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D HG TPL AA +G+ +I ++LL +GADVN+ + + G +A +
Sbjct: 95 IVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ R G++ LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 104 NSVGRTASQMAA 115
+S+G T +AA
Sbjct: 77 DSLGVTPLHLAA 88
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + GY+ LH
Sbjct: 27 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL AGA A + G T +AA
Sbjct: 86 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + GY+ LH AA G ++
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEV 131
Query: 93 LLSAGAKSYATNSVGRTA 110
LL AGA A + G+TA
Sbjct: 132 LLKAGADVNAQDKFGKTA 149
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + + GY+ LH AA G ++ LL AGA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 104 NSVGRTASQMAA 115
+ G T +AA
Sbjct: 77 DKDGYTPLHLAA 88
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + G +A + +G +D+
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-QDKFGKTAFDISIDNGNEDLAEI 164
Query: 93 L 93
L
Sbjct: 165 L 165
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G+TPL AA +G+ +I ++LL HGADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
AA G ++ LL GA A + G+TA
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L A G ++L+ +GADVN+ + G + LH AA G ++ LL GA A+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 104 NSVGRTASQMAAFV 117
+S GRT +AA V
Sbjct: 77 DSWGRTPLHLAATV 90
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNK-QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCA 91
VD+ D++GMTPL AAY+ + +LLL VN G H +ALH+A L+G V +
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 92 CLLSAGAKSYATNSVGRTASQMA 114
LL AGA A N G +A +A
Sbjct: 195 LLLEAGANVDAQNIKGESALDLA 217
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
N ID V+ +S+ + L + TPL A +G+ + L+ +GAD + E G
Sbjct: 52 NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GC 110
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
S +H AA G + A L++ G + G T AA+
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + GY+ LH
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLH 73
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL AGA A + G T +AA
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + GY+ LH AA G ++
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEV 119
Query: 93 LLSAGAKSYATNSVGRTASQMA 114
LL AGA A + G+T +A
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLA 141
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + + GY+ LH AA G ++ LL AGA A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 104 NSVGRTASQMAA 115
+ G T +AA
Sbjct: 65 DKDGYTPLHLAA 76
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + G + A +G +D+
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-QDKFGKTPFDLAIDNGNEDIAEV 152
Query: 93 LLSAG 97
L A
Sbjct: 153 LQKAA 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + GY+ LH
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLH 73
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL AGA A + G T +AA
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + GY+ LH AA G ++
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEV 119
Query: 93 LLSAGAKSYATNSVGRTASQMA 114
LL AGA A + G+T +A
Sbjct: 120 LLKAGADVNAQDKFGKTPFDLA 141
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + + GY+ LH AA G ++ LL AGA A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 104 NSVGRTASQMAA 115
+ G T +AA
Sbjct: 65 DKDGYTPLHLAA 76
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + G + A G +D+
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-QDKFGKTPFDLAIREGHEDIAEV 152
Query: 93 LLSAG 97
L A
Sbjct: 153 LQKAA 157
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G+TPL AA +G+ +I ++LL HGADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
AA G ++ LL GA A + G+TA
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L A G ++L+ +GADVN+ + G + LH AA G ++ LL GA A+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 104 NSVGRTASQMAAFV----VVAVINNYIA 127
+ GRT +AA V +V V+ Y A
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ YD G TPL AA+ G+ +I ++LL +GADVN+ + ++G + LH A
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA-KDDNGITPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 ANRGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AAY G+ +I ++LL +GADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA-YDTLGSTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL GA A + G T +AA
Sbjct: 86 LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D++G+TPL AA +G+ +I ++LL +GADVN+ + + G +A +
Sbjct: 95 IVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 INNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ G++ LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 104 NSVGRTASQMAA 115
+++G T +AA
Sbjct: 77 DTLGSTPLHLAA 88
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G+TPL AA G+ +I ++LL HGADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-IDIXGSTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV 117
AAL G ++ LL GA A ++ G T +AA +
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ D G TPL AA G+ +I ++LL HGADVN+ G + LH A
Sbjct: 62 IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A+ G ++ LL GA A + G+TA
Sbjct: 121 AIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ D G TPL AA G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ G + LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 104 NSVGRTASQMAAFV 117
+ G T +AA +
Sbjct: 77 DIXGSTPLHLAALI 90
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V +L +H + VD G TPL A++ GN ++ + LL H ADVN+ + + GYS LH A
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQA 351
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
A G D+ LL GA +S G T +A
Sbjct: 352 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V +LL E + ++G+TPL A + N I +LLL G +S +GY+ LH A
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIA 219
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
A + +V LL G + A + G T +AA
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
G+TPL AA +G+ ++ LLL A+ N G + G + LH A G V L+ G
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 100 SYATNSVGRTASQMAA 115
AT +G T +A+
Sbjct: 304 VDATTRMGYTPLHVAS 319
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V K L ++K +V+ + TPL AA G+ + +LLL++ A+ N G++ LH A
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT-TAGHTPLHIA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
A G + LL A G T +AA
Sbjct: 121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAA 154
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
N+ KLL E+ +L G TPL AA +G+ + LL+ A + + G++ LH
Sbjct: 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHV 152
Query: 81 AALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRG 139
AA GK V LL A A G T VAV +N + ++ ++PRG
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLH------VAVHHNNL---DIVKLLLPRG 202
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 41 MTPLQHAAYKGNKQICQLLLDHGA--DVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+TPL A++ G+ I + LL GA +V++ + E + LH AA +G +V LL A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE---TPLHMAARAGHTEVAKYLLQNKA 71
Query: 99 KSYA 102
K A
Sbjct: 72 KVNA 75
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G+TPL AA G+ +I ++LL HGADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-IDIMGSTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV 117
AAL G ++ LL GA A ++ G T +AA +
Sbjct: 86 LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ D G TPL AA G+ +I ++LL HGADVN+ G + LH A
Sbjct: 62 IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A+ G ++ LL GA A + G+TA
Sbjct: 121 AIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ D G TPL AA G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ G + LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 104 NSVGRTASQMAAFV 117
+ +G T +AA +
Sbjct: 77 DIMGSTPLHLAALI 90
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+G TPL AA G+ ++ +LLL+ GADVN+ + ++G + LH AA +G +V LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 99 KSYATNSVGRTASQMAA 115
A + GRT +AA
Sbjct: 60 DVNAKDKNGRTPLHLAA 76
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++N V KLL E V+ D++G TPL AA G+ ++ +LLL+ GADVN+ + ++G
Sbjct: 10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNG 68
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
+ LH AA +G +V LL AGA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ DE+G+TPL A G+ +I ++LL +GADVN+ G++ LH
Sbjct: 27 DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
AA G ++ LL GA A + G+TA
Sbjct: 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + E+G + L+ A G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 104 NSVGRTASQMAAFV 117
+++G T +AAF+
Sbjct: 77 DAIGFTPLHLAAFI 90
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G TPL AA+ G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFGKTAFDIS 120
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 121 IGNGNEDLAEIL 132
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G+TPL AA +G+ ++ ++LL +GADVN+ H +G++ LH A
Sbjct: 62 IVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH-NGFTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 ANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AAY G+ +I ++LL +GADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G +V LL GA A + G T +AA
Sbjct: 86 LAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ H G++ LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 104 NSVGRTASQMAA 115
+S+G T +AA
Sbjct: 77 DSLGVTPLHLAA 88
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V ++L ++ V+ D +G TPL AA G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 95 VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + + YD +G TPL AA G+ +I ++LL +GADVN+ +G + LH
Sbjct: 15 DDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA-VDTNGTTPLH 73
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
AA G ++ LL GA A ++ G T +AA+
Sbjct: 74 LAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAY 110
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G+TPL AAY G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 83 IVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA-QDKFGKTAFDIS 141
Query: 82 ALSGKDDVCACL 93
G +D+ L
Sbjct: 142 IDIGNEDLAEIL 153
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GAD N+ H +G + LH AA G ++ LL GA A
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDH-YGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 104 NSVGRTASQMAA 115
++ G T +AA
Sbjct: 65 DTNGTTPLHLAA 76
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 81 AALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV 117
AA +G+DD L++ GA + A + GRT MAA V
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAV 45
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G+TPL AA G+ +I ++LL HGADVN+ ++ G++ LH A
Sbjct: 62 IVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND-GHTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A G ++ LL GA A + G+TA
Sbjct: 121 AKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AA G+ +I ++LL +GADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT-GITPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA +G ++ LL GA A ++ G T +AA
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L +H V+ YD G TPL AA G+ +I ++LL HGADVN+ + + G +A +
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ ++ GY+ LH AA +G ++ LL GA A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 104 NSVGRTASQMAA 115
+ G T +AA
Sbjct: 77 DLTGITPLHLAA 88
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D G TPL AA + +I ++LL HGADVN+ ++ G + LH
Sbjct: 27 DDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND-GSTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
AAL G ++ LL GA A + G+TA
Sbjct: 86 LAALFGHLEIVEVLLKHGADVNAQDKFGKTA 116
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
+GN + D + ++L +H V+ +D G TPL AA G+ +I ++LL HGAD
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 66 VNSGRHEHGYSALHFAALSGKDDVCACL 93
VN+ + + G +A + +G +D+ L
Sbjct: 106 VNA-QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + G + LH AA ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRK-GNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 104 NSVGRTASQMAAF 116
++ G T +AA
Sbjct: 77 DNDGSTPLHLAAL 89
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D +G TPL AA G+ +I ++LL +GADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS-GSTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
AA G ++ LL GA A +++G T +AA
Sbjct: 86 LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G TPL AA +G+ +I ++LL +GADVN+ G + LH A
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLA 120
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A +G ++ LL GA A + G+TA
Sbjct: 121 ADTGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ +G + LH AA G ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 104 NSVGRTASQMAA----FVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLH 155
+ G T +AA +V V+ Y A D D I + PLH
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD--------------DTIGSTPLH 118
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ ++L ++ V+ D G TPL AA G+ +I ++LL +GADVN+ + + G +A +
Sbjct: 95 IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA-QDKFGKTAFDIS 153
Query: 82 ALSGKDDVCACL 93
+G +D+ L
Sbjct: 154 IDNGNEDLAEIL 165
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
+ +LL +H V D+ G+ PL +A G+ ++ +LLL HGA VN+ ++ LH A
Sbjct: 73 IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEA 131
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
A + +VC+ LLS GA N G++A MA
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V +LL V+ ++ MTPL AA + + + ++L HGA +N+ G +ALH A
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA-LDSLGQTALHRA 287
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNY--IAKSEVDYYIV 136
AL+G C LLS G+ + G TA+QM V +++ + S+VDY ++
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDYRLL 344
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 53 KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQ 112
KQ+ +LLL GA+VN +++ + LH AA +DV L GAK A +S+G+TA
Sbjct: 227 KQVAELLLRKGANVNE-KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 113 MAAFV 117
AA
Sbjct: 286 RAALA 290
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
++V ++L +H +++ D G T L AA G+ Q C+LLL +G+D
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L+ + V+ D G TPL AA G+ +I ++LL +GADVN+ + G + LH
Sbjct: 27 DDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
AA + ++ LL GA A + G+TA
Sbjct: 86 LAAWADHLEIVEVLLKHGADVNAQDKFGKTA 116
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L +GADVN+ + G++ LH AA+ G ++ LL GA AT
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDY-WGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 104 NSVGRTASQMAAF 116
+ GRT +AA+
Sbjct: 77 GNTGRTPLHLAAW 89
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17 NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
N + V+ LL +H V D+ G+ PL +A G+ ++ +LL+ HGA VN ++
Sbjct: 57 NRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFT 114
Query: 77 ALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
LH AA GK ++C LL GA N G T
Sbjct: 115 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 147
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G+TPL AA + +I ++LL +GADVN+ G + LH
Sbjct: 27 DDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA-IDAIGETPLH 85
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
A+ G ++ LL GA A + G+TA
Sbjct: 86 LVAMYGHLEIVEVLLKHGADVNAQDKFGKTA 116
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 17 NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
ND + ++L ++ V+ D G TPL A G+ +I ++LL HGADVN+ + + G +
Sbjct: 57 NDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNA-QDKFGKT 115
Query: 77 ALHFAALSGKDDVCACL 93
A + +G +D+ L
Sbjct: 116 AFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + G + LH AA++ ++ LL GA A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 104 NSVGRTASQMAA 115
+++G T + A
Sbjct: 77 DAIGETPLHLVA 88
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17 NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
N + V+ LL +H V D+ G+ PL +A G+ ++ +LL+ HGA VN ++
Sbjct: 55 NRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFT 112
Query: 77 ALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
LH AA GK ++C LL GA N G T
Sbjct: 113 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17 NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
N + V+ LL +H V D+ G+ PL +A G+ ++ +LL+ HGA VN ++
Sbjct: 53 NRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFT 110
Query: 77 ALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
LH AA GK ++C LL GA N G T
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
K DI +V+ LL ++ ++ D G TPL A G+ ++ +LLL H A VN+ +++
Sbjct: 20 KGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND- 77
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVG 107
S LH AA +G D+ LLS GA A N G
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V ++L R+++ + TPL AA G++ I Q LL + AD+N+ +EHG LH+A
Sbjct: 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYA 112
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVG 107
G+D V L++ GA N G
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYG 138
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+HG +PL A +G + ++L+ GA +N + + LH AA G D+ LL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 97 GAKSYATNSVGRTASQMAAF 116
A A N G A F
Sbjct: 95 KADINAVNEHGNVPLHYACF 114
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
D VQKLL ++K ++ +EHG PL +A + G Q+ + L+ +GA V
Sbjct: 86 DIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 50 KGNKQICQLLLDHGA-DVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGR 108
+GN +L LD+ D+N G +HG+S LH+A G+ V L+ GA+ N
Sbjct: 15 EGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 73
Query: 109 TASQMAA 115
T +AA
Sbjct: 74 TPLHLAA 80
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V ++L R+++ + TPL AA G++ I Q LL + AD+N+ +EHG LH+A
Sbjct: 49 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYA 107
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVG 107
G+D V L++ GA N G
Sbjct: 108 CFWGQDQVAEDLVANGALVSICNKYG 133
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+HG +PL A +G + ++L+ GA +N + + LH AA G D+ LL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 97 GAKSYATNSVGRTASQMAAF 116
A A N G A F
Sbjct: 90 KADINAVNEHGNVPLHYACF 109
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
D VQKLL ++K ++ +EHG PL +A + G Q+ + L+ +GA V
Sbjct: 81 DIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 50 KGNKQICQLLLDHGA-DVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGR 108
+GN +L LD+ D+N G +HG+S LH+A G+ V L+ GA+ N
Sbjct: 10 EGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 109 TASQMAA 115
T +AA
Sbjct: 69 TPLHLAA 75
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
VQ LLS ++ V+ D+ G TP+ A + + +LLL G+D+N +E LH+A
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI-CLHWA 151
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
A SG D+ LL+A +A N G + +AA
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG-ADVNS 68
+ + N ++ V+ L+ L VD D G T L AA KG+ ++ Q LL +G DVN
Sbjct: 48 LMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Query: 69 GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAK 128
+ + G++ + +A D+ LLS G+ ++ AAF I +
Sbjct: 107 -QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
Query: 129 SEVDYYIV 136
++ D + V
Sbjct: 166 AKCDLHAV 173
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 70 RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS 129
H++ S LH AA +G D+C L+ AGA + RT ++ A NN++
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTP------LMEAAENNHL--- 57
Query: 130 EVDYYIVPRGLETTPK 145
E Y++ G PK
Sbjct: 58 EAVKYLIKAGALVDPK 73
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
G TPL +AA G+ + + LL GADVN+ R + G + LH AA +G ++ LL+ GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 100 SYATNSVGRTASQMA 114
A + G T +A
Sbjct: 68 VNARSKDGNTPEHLA 82
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 6 EGNEIFDFISKN-DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA 64
+GN +KN + V+KLLS+ V+ + G TPL AA G+ +I +LLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 65 DVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
DVN+ R + G + H A +G ++ L + GA
Sbjct: 67 DVNA-RSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
+GN +KN + KLL V+ + G TP A G+ +I +LL GAD
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 66 VNS 68
VN+
Sbjct: 101 VNA 103
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ T L A G+ +I + LL G VN + + G+S LH AA +G+D++ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 97 GAKSYATNSVGRTASQMAA 115
GA+ A N G T AA
Sbjct: 96 GAQVNAVNQNGCTPLHYAA 114
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ G +PL AA G +I + LL GA VN+ +++G + LH+AA + ++ LL
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 97 GAKSYATNSVGRTASQMAA 115
GA A + TA AA
Sbjct: 129 GANPDAKDHYEATAMHRAA 147
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D + K L +V+ +++G TPL +AA K +I +LL+ GA+ ++ H + +A+H
Sbjct: 86 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YEATAMH 144
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
AA G + LL A + ++ G T +A
Sbjct: 145 RAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ T L A G+ +I + LL G VN + + G+S LH AA +G+D++ LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 97 GAKSYATNSVGRTASQMAA 115
GA+ A N G T AA
Sbjct: 97 GAQVNAVNQNGCTPLHYAA 115
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ G +PL AA G +I + LL GA VN+ +++G + LH+AA + ++ LL
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 97 GAKSYATNSVGRTASQMAA 115
GA A + TA AA
Sbjct: 130 GANPDAKDHYEATAMHRAA 148
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D + K L +V+ +++G TPL +AA K +I +LL+ GA+ ++ H + +A+H
Sbjct: 87 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YEATAMH 145
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
AA G + LL A + ++ G T +A
Sbjct: 146 RAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
+ N + +KLLS+ V+ D G TPL + G ++ LL+HGA+VN R+
Sbjct: 76 VKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLE 133
Query: 74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
G + L A+ G+ ++ LL GA A + G TA A
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADVN+ + + GY+ LH AA G ++ LL AGA A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 104 NSVGRTA 110
+ G+TA
Sbjct: 65 DKFGKTA 71
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V+ D+ G TPL AA +G+ +I ++LL GADVN+ + + G +A
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-QDKFGKTAFD 73
Query: 80 FAALSGKDDVCACLLSAG 97
+ +G +D+ L A
Sbjct: 74 ISIDNGNEDLAEILQKAA 91
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S D + V +LL E ++ + G+T L A N + + L+++GA++N +E G
Sbjct: 49 SSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-G 106
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
+ LH AA G D+ L+S GA A NS G T
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
G T L AA KG ++ +LL+ DVN ++ G++ LH AA GK++ C L+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD-GWTPLHAAAHWGKEEACRILVENLCD 257
Query: 100 SYATNSVGRTASQMA 114
A N VG+TA +A
Sbjct: 258 MEAVNKVGQTAFDVA 272
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
V KLL + + V++ D G TPL AA+ G ++ C++L+++ D+ +
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ T L A G+ +I + LL G VN + + G+S LH AA +G+D++ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 97 GAKSYATNSVGRTASQMAA 115
GA A N G T AA
Sbjct: 96 GAHVNAVNQNGCTPLHYAA 114
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ G +PL AA G +I + LL GA VN+ +++G + LH+AA + ++ LL
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 97 GAKSYATNSVGRTASQMAA 115
GA A + TA AA
Sbjct: 129 GANPDAKDHYDATAMHRAA 147
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D + K L V+ +++G TPL +AA K +I +LL+ GA+ ++ H + +A+H
Sbjct: 86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMH 144
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
AA G + LL A + ++ G T +A
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
K D + +LL + VD DE+G T L A G+ + +LL + GAD++ G
Sbjct: 54 KADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 111
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
+ALH AA + +V L+ GA + G TA ++A
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 33/172 (19%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
K D + +LL + VD DE+G T L A G+ + +LL + GAD++ G
Sbjct: 55 KADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 112
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI 135
+ALH AA + +V L+ GA + G TA ++A +
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI------------------ 154
Query: 136 VPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVV 187
L+TTPK +P+ F ++ + V +N+L + V ++V
Sbjct: 155 ----LKTTPKGNPM------QFGRRIGLEKV---INVLEGQVFEYAEVDEIV 193
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHG-MTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
+ D+D VQ+LL E V+ +E G TPL +A + I +LLL HGAD R +
Sbjct: 33 VQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK 90
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+G + AA++G + LS GA + G TA AA
Sbjct: 91 NGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 133
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 55 ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
+ Q LL+ GA+VN E G++ LH A ++D+ LL GA G T +A
Sbjct: 40 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
Query: 115 AFV-VVAVINNYIAK----SEVDYY 134
A V ++ +++K +E D+Y
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFY 124
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
+++ +LL H L ++G TP AA G+ ++ +L L GADVN +G++A
Sbjct: 72 EDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFM 130
Query: 80 FAALSGKDDVCACLLSAGA 98
AA+ GK L GA
Sbjct: 131 EAAVYGKVKALKFLYKRGA 149
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR---------HEHGYSALHFAALSGKD 87
D +G T AA G + + L GA+VN R + G +AL AA G
Sbjct: 122 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181
Query: 88 DVCACLLS-AGAKSYATNSVGRTA 110
+V LL GA A +++GR A
Sbjct: 182 EVLKILLDEMGADVNACDNMGRNA 205
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 24 KLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
+LL E +D D + G +PL HA + + QLLL HGA+VN+ + G SALH A+
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS-GSSALHSAS 191
Query: 83 LSGKDDVCACLLSAGAKSYATN 104
G + L+ +GA S N
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKN 213
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY-----SALHFAALSGKDDVCA 91
DE G TPL A +GN L++ GR Y + LH A ++ V
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQ--QGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 92 CLLSAGAKSYATNSVGRTASQMA 114
L++AGA A + G+TA+ +A
Sbjct: 64 LLVTAGASPMALDRHGQTAAHLA 86
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 36 YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
YD G+T L A ++ QLLL+ GAD+++ + G S L A + + LL
Sbjct: 114 YD--GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171
Query: 96 AGAKSYATNSVGRTASQMAA 115
GA A G +A A+
Sbjct: 172 HGANVNAQMYSGSSALHSAS 191
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHG-MTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
+ D+D VQ+LL E V+ +E G TPL +A + I +LLL HGAD R +
Sbjct: 13 VQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK 70
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+G + AA++G + LS GA + G TA AA
Sbjct: 71 NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 55 ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
+ Q LL+ GA+VN E G++ LH A ++D+ LL GA G T +A
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 115 AFV-VVAVINNYIAK----SEVDYY 134
A V ++ +++K +E D+Y
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFY 104
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
+++ +LL H L ++G TP AA G+ ++ +L L GADVN +G++A
Sbjct: 52 EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFM 110
Query: 80 FAALSGKDDVCACLLSAGA 98
AA+ GK L GA
Sbjct: 111 EAAVYGKVKALKFLYKRGA 129
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR---------HEHGYSALHFAALSGKD 87
D +G T AA G + + L GA+VN R + G +AL AA G
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 88 DVCACLLS-AGAKSYATNSVGRTA 110
+V LL GA A +++GR A
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNA 185
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVD---LYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
+ D + + D VQ+++ E VD L ++ G+T L +A G+ +I + L+ G +V
Sbjct: 41 LLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 67 NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTAS 111
N+ + G++ LH AA VC L+ +GA +A T S +TA+
Sbjct: 97 NAADSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+E G+T L +A N I L+ GA+VNS HG++ LH AA +C L+
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQH 109
Query: 97 GAKSYATN-SVGRTA 110
GA +AT S G TA
Sbjct: 110 GAAIFATTLSDGATA 124
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ T L A G+ +I + LL G VN + + G+S LH AA +G D++ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 97 GAKSYATNSVGRTASQMAA 115
GA A N G T AA
Sbjct: 96 GAHVNAVNQNGCTPLHYAA 114
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D+ G +PL AA G +I + LL GA VN+ +++G + LH+AA + ++ LL
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 97 GAKSYATNSVGRTASQMAA 115
GA A + TA AA
Sbjct: 129 GANPDAKDHYDATAMHRAA 147
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D + K L V+ +++G TPL +AA K +I +LL+ GA+ ++ H + +A+H
Sbjct: 86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMH 144
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
AA G + LL A + ++ G T +A
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVD---LYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
+ D + + D VQ+++ E VD L ++ G+T L +A G+ +I + L+ G +V
Sbjct: 41 LLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 67 NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTAS 111
N+ + G++ LH AA VC L+ +GA +A T S +TA+
Sbjct: 97 NAADSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSY 101
TPL AA +G+ I ++LL HGADVN+ + +ALH+A +V L+ GA +
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 102 ATNSVGRTA 110
+ +TA
Sbjct: 128 TQSKFCKTA 136
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
N+ ++L +H V+ D MT L A ++++ +LL+ +GADV++ + + +A
Sbjct: 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDI 139
Query: 81 AALSGKDDVCACL 93
+ +G +D+ L
Sbjct: 140 SIDNGNEDLAEIL 152
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GA + G S LH AA G LL AG A
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWL--GTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 104 NSVGRTASQMAA 115
V RT MAA
Sbjct: 64 TKVDRTPLHMAA 75
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 19 IDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSAL 78
+D +Q LL E + V++ D G PL AA +G+ ++ + L+ H A R+ G +A
Sbjct: 83 LDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 79 HFAALSGKDDVCACLLSAGAKSYATN 104
A L G+++V + + + GA ATN
Sbjct: 142 DLARLYGRNEVVSLMQANGAGG-ATN 166
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
V K L + + + D G TPL +A G+ ++ LLL HGA +N+ ++ G +ALH A
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK-GNTALHEA 192
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
+ V LL GA N RTA
Sbjct: 193 VIEKHVFVVELLLLHGASVQVLNKRQRTA 221
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 31 LRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVC 90
L V++ + G +PL AA G + LLL HGA+ + R+ LH A G V
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVV 135
Query: 91 ACLLSAGAKSYATNSVGRT 109
CLL + AK + G T
Sbjct: 136 KCLLDSNAKPNKKDLSGNT 154
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 25 LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
LL +H + PL A +G+ Q+ + LLD A N + G + L +A
Sbjct: 104 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYACSG 162
Query: 85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G ++ A LL GA A+N+ G TA A
Sbjct: 163 GHHELVALLLQHGASINASNNKGNTALHEAVI 194
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADV + + ++G + LH AA +G +V LL AGA A
Sbjct: 28 LLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 104 NSVGRTA 110
+ G+TA
Sbjct: 87 DKFGKTA 93
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V D++G TPL AA G+ ++ +LLL+ GADV + + + G +A
Sbjct: 37 DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFD 95
Query: 80 FAALSGKDDVCACL 93
+ +G +D+ L
Sbjct: 96 ISIDNGNEDLAEIL 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA G ++L+ +GADV + + ++G + LH AA +G +V LL AGA A
Sbjct: 10 LLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 104 NSVGRTA 110
+ G+TA
Sbjct: 69 DKFGKTA 75
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D+ ++L + V D++G TPL AA G+ ++ +LLL+ GADVN+ + + G +A
Sbjct: 19 DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA-QDKFGKTAFD 77
Query: 80 FAALSGKDDVCACL 93
+ +G +D+ L
Sbjct: 78 ISIDNGNEDLAEIL 91
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV 89
+L + YD H TPL A + ++ +LL D GAD+N G + LH A + V
Sbjct: 150 QLEAENYDGH--TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 90 CACLLSAGAKSYATNSVGRT 109
LL AGA A GRT
Sbjct: 208 LELLLKAGADPTARMYGGRT 227
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV 89
+L + YD H TPL A + ++ +LL D GAD+N G + LH A + V
Sbjct: 150 QLEAENYDGH--TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 90 CACLLSAGAKSYATNSVGRT 109
LL AGA A GRT
Sbjct: 208 LELLLKAGADPTARMYGGRT 227
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
+ + ++ D V+++L + +VD D G TPL A + + +I + L+D GAD+N
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL- 67
Query: 70 RHEHGYSALHFAALSGKDDVCACLL 94
++ S +A G+ ++ A +L
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYML 92
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAA--YKGN---KQICQLLLD 61
GN + K IDNV+ LL + + +D ++ G T L A +GN + I +LL++
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166
Query: 62 HGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
+GAD S + G +A+ +A G ++ L
Sbjct: 167 NGAD-QSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 36 YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD------DV 89
++ +G L AA KG+ +LLL+ G + +++ GY+AL A+ ++ D+
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL-IEAVGLREGNQLYQDI 160
Query: 90 CACLLSAGAKSYATNSVGRTASQMA 114
L+ GA ++ GRTA A
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYA 185
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGAD---VNSGRHEHGYSALHFAALSGKDDVCACL 93
DE G TPL AA G + + LL +GAD + GR SAL A G D+ L
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE----SALSLACSKGYTDIVKML 88
Query: 94 LSAG 97
L G
Sbjct: 89 LDCG 92
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
++ K+L + + V+ YD +G TPL +A + + + ++LL+ GAD + + GY+++
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDL 141
Query: 81 AALSGKDDV 89
A G V
Sbjct: 142 AVALGYRSV 150
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGAD---VNSGRHEHGYSALHFAALSGKDDVCACL 93
DE G TPL AA G + + LL +GAD + GR SAL A G D+ L
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE----SALSLACSKGYTDIVKML 86
Query: 94 LSAG 97
L G
Sbjct: 87 LDCG 90
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
++ K+L + + V+ YD +G TPL +A + + + ++LL+ GAD + + GY+++
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDL 139
Query: 81 AALSGKDDV 89
A G V
Sbjct: 140 AVALGYRSV 148
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGAD---VNSGRHEHGYSALHFAALSGKDDVCACL 93
DE G TPL AA G + + LL +GAD + GR SAL A G D+ L
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE----SALSLACSKGYTDIVKML 104
Query: 94 LSAG 97
L G
Sbjct: 105 LDCG 108
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
++ K+L + + V+ YD +G TPL +A + + + ++LL+ GAD + + GY+++
Sbjct: 99 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDL 157
Query: 81 AALSGKDDV 89
A G V
Sbjct: 158 AVALGYRSV 166
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
I ++ ++D +++ L + V+ DE G TPL A+ G + + LL+ GAD +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 70 RHEHGYSALHFAALSGKDDVCACLL 94
E SAL A+ G D+ LL
Sbjct: 66 AKER-ESALSLASTGGYTDIVGLLL 89
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
++ LL E + +++YD +G TPL +A + + + LL GAD+ + + GY+ +
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDL 141
Query: 81 AALSGKDDVCACLLSAGAKSYATNSV 106
A G V + + K + +N V
Sbjct: 142 AVALGYRKVQQVIENHILKLFQSNLV 167
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
++ LL E + +++YD +G TPL +A + + + + LL GAD+ + + GY+ +
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTT-EADSGYTPMDL 141
Query: 81 AALSGKDDVCACLLSAGAKSYATNSV 106
A G V + + K + +N V
Sbjct: 142 AVALGYRKVQQVIENHILKLFQSNLV 167
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
I ++ ++D +++ L + V+ DE G TPL A+ G + + LL+ GAD +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 70 RHEHGYSALHFAALSGKDDVCACLL 94
E SAL A+ G D+ LL
Sbjct: 66 AKER-ESALSLASTGGYTDIVGLLL 89
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 28 EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD 87
++++ V+ D+ G T L A + G+K I + L + +++ G +ALH AA G
Sbjct: 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYA 153
Query: 88 DVCACLLSAGAKS 100
D+ LL+ GA++
Sbjct: 154 DIVQLLLAKGART 166
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA 64
D V+ L ++ + ++ ++ G T L AA+KG I QLLL GA
Sbjct: 120 DIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 1 MSIPMEGNEIFDFISKNDID------NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQ 54
+S P+ G+ + D+ ++ +++ L+S+ V++ ++PL A G+
Sbjct: 48 LSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLS 106
Query: 55 ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
++LL HGA VN G ++ L A +SG D LL GA + + + A
Sbjct: 107 CVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165
Query: 115 AFVVVAVINNYIA-KSEVDYYI 135
V +N+ IA +D+ I
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKI 187
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
I + + ++ V L++ + +D H TPL A + + LL+ GADVN G
Sbjct: 161 IHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219
Query: 70 RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGR 108
+ + S LH + +++ L+ GA + A N+ G+
Sbjct: 220 KGQD--SPLHAVVRTASEELACLLMDFGADTQAKNAEGK 256
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
+ D+D V+ +++ + V+ E G PL +AA G +I + LL GAD+N+ +H
Sbjct: 10 LKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKH 67
Query: 74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
+ L A G LLS GA G TA
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 104
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+G T L A+ G I +LL+ GADVN+ +G +ALH A D+ + LL GA
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175
Query: 99 KSYATNSVGRTASQMA 114
G + Q+
Sbjct: 176 DVNRVTYQGYSPYQLT 191
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 40 GMTPLQHAAYKG---------------NKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
G+TPL AA +G Q+ LL GA++N+ + G ++LH AA
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 85 GKDDVCACLLSAGAKSYATNSVGRT 109
+ D LL AGA + + ++ GRT
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRT 86
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D G TPL A + Q+LL + A + R G + L AA + + L++A
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA 140
Query: 97 GAKSYATNSVGRTASQMAAFV 117
A A ++ G+TA AA V
Sbjct: 141 DADINAADNSGKTALHWAAAV 161
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+G T L A+ G I +LL+ GADVN+ +G +ALH A D+ + LL GA
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 172
Query: 99 KSYATNSVGRTASQMA 114
G + Q+
Sbjct: 173 DVNRVTYQGYSPYQLT 188
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
+D H TPL A + + LL+ GADVN G+ + S LH A + +++
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD--SPLHAVARTASEELACL 184
Query: 93 LLSAGAKSYATNSVGR 108
L+ GA + A N+ G+
Sbjct: 185 LMDFGADTQAKNAEGK 200
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
V++ ++PL A G+ ++LL HGA VN G ++ L A +SG D
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNL 87
Query: 93 LLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIA-KSEVDYYIVPRG 139
LL GA + + + A V +N+ IA +D+ I G
Sbjct: 88 LLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 135
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
E + D+D V+ +++ + V+ E G PL +AA G +I + LL GAD+N+
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 69 GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
+H + L A G LLS GA G TA
Sbjct: 69 -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSY 101
TPL A + C+ LL +GA+VN G LH A + G + L GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 102 ATNSVGR 108
A +S GR
Sbjct: 296 ARDSEGR 302
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+ L ++ V+ D G PL HA G+ + L L GAD+ + R G L A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAME 310
Query: 84 SGKDDVCACL 93
+ D+ L
Sbjct: 311 TANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSY 101
TPL A + C+ LL +GA+VN G LH A + G + L GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 102 ATNSVGR 108
A +S GR
Sbjct: 296 ARDSEGR 302
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+ L ++ V+ D G PL HA G+ + L L GAD+ + R G L A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAME 310
Query: 84 SGKDDVCACL 93
+ D+ L
Sbjct: 311 TANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSY 101
TPL A + C+ LL +GA+VN G LH A + G + L GA
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 102 ATNSVGR 108
A +S GR
Sbjct: 296 ARDSEGR 302
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+ L ++ V+ D G PL HA G+ + L L GAD+ + R G L A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAME 310
Query: 84 SGKDDVCACL 93
+ D+ L
Sbjct: 311 TANADIVTLL 320
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ ++ V++LL E + + G P+Q G+ Q+ +LLL HGA+ N
Sbjct: 21 ARGQVETVRQLL-EAGADPNALNRFGRRPIQ-VMMMGSAQVAELLLLHGAEPNCADPATL 78
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
+H AA G D L AGA+ ++ GR +A
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 349 YCDRECQRLHWFIHKKECA 367
YCDR CQ+ W HK ECA
Sbjct: 73 YCDRTCQKDAWLNHKNECA 91
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 449 YCDRECQRLHWFIHKKECA 467
YCDR CQ+ W HK ECA
Sbjct: 73 YCDRTCQKDAWLNHKNECA 91
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 36 YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
Y EH PL AA G+++I +LL++HGAD+ + + G + LH L + AC +
Sbjct: 120 YGEH---PLSFAACVGSEEIVRLLIEHGADIRA-QDSLGNTVLHILILQ-PNKTFACQMY 174
Query: 96 AGAKSY 101
SY
Sbjct: 175 NLLLSY 180
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN---SGRHEH---------GYSALHFA 81
+LY+ G T L A N + + LL GA V+ +G H G L FA
Sbjct: 71 ELYE--GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA 128
Query: 82 ALSGKDDVCACLLSAGAKSYATNSVGRT 109
A G +++ L+ GA A +S+G T
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSLGNT 156
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.0 bits (71), Expect = 0.80, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
++ D G +P+ AA G ++L++HGADVN+ G +H A G V + L
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA-LDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
++ D G +P+ AA G ++L++HGADVN+ G +H A G V + L
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA-LDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
++ D G +P+ AA G ++L++HGADVN G +H A G V +
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHTAVVS-F 125
Query: 94 LSAGAKSYATNSVGRTASQMA 114
L+A + + ++ G T ++A
Sbjct: 126 LAAESDLHRRDARGLTPLELA 146
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
++ D G +P+ AA G ++L++HGADVN G +H A G V +
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHTAVVS-F 119
Query: 94 LSAGAKSYATNSVGRTASQMA 114
L+A + + ++ G T ++A
Sbjct: 120 LAAESDLHRRDARGLTPLELA 140
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ ++ V+ LL L + + +G P+Q G+ ++ +LLL HGA+ N
Sbjct: 21 ARGRVEEVRALLEAGALP-NAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATL 78
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
+H AA G D L AGA+ ++ GR +A
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+ +G P+Q G+ ++ +LLL HGA+ N +H AA G D L A
Sbjct: 42 NSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Query: 97 GAKSYATNSVGRTASQMA 114
GA+ ++ GR +A
Sbjct: 101 GARLDVRDAWGRLPVDLA 118
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 20/180 (11%)
Query: 13 FISKNDIDNVQKLLSEHKLRVDL---YDEHGMTPLQHAAYKGNKQICQ----LLLDHGAD 65
F NDI +V+KL++E + L E G+ P YK +++C LL+
Sbjct: 163 FAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQ 222
Query: 66 VNSGRHEHGYSALHFAAL---SGKDDVCACLLSAGA----KSYATNSV--GRTASQMAAF 116
GR ++ H L C LS GA + A+NS+ G S
Sbjct: 223 CGXGRSGKFFAYEHAQILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGN 282
Query: 117 VVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSL 176
+V N + + + + LE KL P L + L I + + R L L
Sbjct: 283 PLVCAGVNAV----FEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGL 338
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 349 YCDRECQRLHWFIHKKEC--------ARSGPSA 373
YC RECQ HW H K C A+SGPS+
Sbjct: 37 YCCRECQVKHWEKHGKTCVLAAQGDRAKSGPSS 69
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 449 YCDRECQRLHWFIHKKEC--------ARSGPSA 473
YC RECQ HW H K C A+SGPS+
Sbjct: 37 YCCRECQVKHWEKHGKTCVLAAQGDRAKSGPSS 69
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 349 YCDRECQRLHWFIHKKECA 367
YCD ECQ+ W +HK EC+
Sbjct: 73 YCDVECQKEDWPLHKLECS 91
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 449 YCDRECQRLHWFIHKKECA 467
YCD ECQ+ W +HK EC+
Sbjct: 73 YCDVECQKEDWPLHKLECS 91
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain (Leu384-Cys430)
Of Human Zinc Finger Mynd Domain Containing Protein 10
Length = 60
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 349 YCDRECQRLHWFIHKKECARSGPSA 373
YC RECQ HW H K C SGPS+
Sbjct: 37 YCCRECQVKHWEKHGKTC--SGPSS 59
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 449 YCDRECQRLHWFIHKKECARSGPSA 473
YC RECQ HW H K C SGPS+
Sbjct: 37 YCCRECQVKHWEKHGKTC--SGPSS 59
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS---GKDDV 89
V++ D +G T L ++ N + Q LLD G ++ GYS + AL+ +DD+
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 90 CAC--LLSAGAKSYATNSVGRTASQMA 114
L G + + G+TA +A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLA 190
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
GA +++ G +ALH AA + D LL A A + +++GRT
Sbjct: 46 GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRT 92
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
GA +++ G +ALH AA + D LL A A + +++GRT
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRT 57
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
GA +++ G +ALH AA + D LL A A + +++GRT
Sbjct: 46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
GA +++ G +ALH AA + D LL A A + +++GRT
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
GA +++ G +ALH AA + D LL A A + +++GRT
Sbjct: 47 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 93
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
G +ALH+AAL + D LL A N G TA +A
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 349 YCDRECQRLHWFIHKKECA 367
YC+ ECQ+ W +HK EC+
Sbjct: 73 YCNVECQKEDWPMHKLECS 91
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 449 YCDRECQRLHWFIHKKECA 467
YC+ ECQ+ W +HK EC+
Sbjct: 73 YCNVECQKEDWPMHKLECS 91
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 349 YCDRECQRLHWFIHKKECA 367
YC+ ECQ+ W +HK EC+
Sbjct: 73 YCNVECQKEDWPMHKLECS 91
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 449 YCDRECQRLHWFIHKKECA 467
YC+ ECQ+ W +HK EC+
Sbjct: 73 YCNVECQKEDWPMHKLECS 91
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 349 YCDRECQRLHWFIHKKECA 367
YC+ ECQ+ W +HK EC+
Sbjct: 73 YCNVECQKEDWPMHKLECS 91
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 449 YCDRECQRLHWFIHKKECA 467
YC+ ECQ+ W +HK EC+
Sbjct: 73 YCNVECQKEDWPMHKLECS 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,052,765
Number of Sequences: 62578
Number of extensions: 653863
Number of successful extensions: 1878
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 354
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)