RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2859
(534 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 89.8 bits (223), Expect = 2e-21
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
S ++ V+ LL E+ V+ D G TPL AA G+ +I +LLL+ GADVN+ R +
Sbjct: 15 ASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-RDKD 72
Query: 74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
G + LH AA +G DV LL GA A + GRT +AA
Sbjct: 73 GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA 114
Score = 77.4 bits (191), Expect = 3e-17
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
+ DE G TPL AA G+ ++ +LLL++GADVN+ + G + LH AA +G ++ L
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLL 59
Query: 94 LSAGAKSYATNSVGRTASQMAAF-----VVVAVINNYIAKSEVDYY 134
L GA A + G T +AA VV ++ + + D
Sbjct: 60 LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105
Score = 74.3 bits (183), Expect = 5e-16
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
++ V+ LL E V+ D+ G TPL AA GN + +LLL HGADVN+ R +
Sbjct: 48 AKNGHLEIVKLLL-EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA-RDKD 105
Query: 74 GYSALHFAALSGKDDVCACLL 94
G + LH AA +G +V LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 75.0 bits (185), Expect = 1e-16
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
+++ V+ LL E V+L D T L AA GN +I +LLL+HGADVN+ + +
Sbjct: 5 AKNGNLELVKLLL-EKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNA-KDKD 60
Query: 74 GYSALHFAALSGKDDVCACLLSAGA 98
G +ALH AA +G ++ LL GA
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGA 85
Score = 64.6 bits (158), Expect = 5e-13
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L AA GN ++ +LLL+ GADVN G +ALH AA +G ++ LL GA A
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 104 NSVGRTASQMAA 115
+ G TA +AA
Sbjct: 58 DKDGNTALHLAA 69
Score = 56.9 bits (138), Expect = 2e-10
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+++ V+ LL EH V+ D+ G T L AA GN +I +LLL+HGAD+N
Sbjct: 36 ARNGNLEIVKLLL-EHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger.
Length = 39
Score = 60.5 bits (147), Expect = 4e-12
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 329 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKEC 366
C CG+E +C++CK+ YC +ECQ+ W HKKEC
Sbjct: 1 CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39
Score = 60.5 bits (147), Expect = 4e-12
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 429 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKEC 466
C CG+E +C++CK+ YC +ECQ+ W HKKEC
Sbjct: 1 CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 64.8 bits (157), Expect = 7e-12
Identities = 47/125 (37%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQIC-----QLLLDHGA--DVN 67
SK D V KLL V+ D G TPL AA GN +LLL+ GA DVN
Sbjct: 82 SKGDDKIV-KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN 140
Query: 68 SGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA-SQMAAFVVVAVINNYI 126
+ R E G + LH+AAL+G D+ LL AGA + NS G TA A + ++ +
Sbjct: 141 NLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL 200
Query: 127 AKSEV 131
K
Sbjct: 201 DKGLH 205
Score = 53.3 bits (127), Expect = 6e-08
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 8 NEIFDFISKNDIDNVQKLLSEHKLRVDLY----DEHGMTPLQHAAYKGNKQICQLLLDHG 63
++ ++ + KL VD + D G PL AA KG+ +I +LLL G
Sbjct: 37 KKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASG 96
Query: 64 ADVNSGRHEHGYSALHFAALSGKD-----DVCACLLSAGAKSYATNSV---GRTASQMAA 115
ADVN+ + G + LH AAL+G +V LL AGA N G T AA
Sbjct: 97 ADVNAKDAD-GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155
Query: 116 F 116
Sbjct: 156 L 156
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 53.1 bits (128), Expect = 2e-09
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 25 LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
LL + ++ D +G TPL AA G ++ Q LL G D+N R G +AL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL-RDSDGLTALDLA 56
Score = 40.4 bits (95), Expect = 6e-05
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 59 LLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
LL+HG + +G + LH AA G ++ LL G +S G TA +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 49.9 bits (120), Expect = 2e-08
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLL 94
G T L AA G ++ + LL+ G D+N E G +ALH AA +G +V LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLLL 54
Score = 46.8 bits (112), Expect = 4e-07
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
+ ++ V+ LL E + ++ DE G T L AA GN ++ +LLL
Sbjct: 5 LHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 37.6 bits (88), Expect = 6e-04
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G +ALH AA+SG+ ++ LL G T+ G TA +AA
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 55.0 bits (132), Expect = 5e-08
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
+LL +HK +D+ D G TPL A KG+ IC++LLD GA+++ +AL +
Sbjct: 149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCY 208
Query: 81 AALSGKDDVCACLLSAGAKS 100
A + K D+ + GA
Sbjct: 209 AIENNKIDIVRLFIKRGADC 228
Score = 40.4 bits (94), Expect = 0.002
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+E+ D + + D+ V++LL K D++ + GMTPL A I +LL+ GAD +
Sbjct: 70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129
Query: 68 SGRHEHGYSALHFAALSG 85
+ +S LH A + G
Sbjct: 130 IPNTDK-FSPLHLAVMMG 146
Score = 38.0 bits (88), Expect = 0.011
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA--DVNSGRHEHGYSAL 78
++ KLL D+ + +PL A G+ + +LL+DH A D+ G + L
Sbjct: 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC---CGCTPL 172
Query: 79 HFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYI 126
A G +C LL +GA + G+ A + A+ NN I
Sbjct: 173 IIAMAKGDIAICKMLLDSGAN---IDYFGKNGC--VAALCYAIENNKI 215
Score = 31.1 bits (70), Expect = 1.4
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
KLL +H D+ + L A +G+ + + LLD G + ++ G + LH A +
Sbjct: 52 KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI 111
Query: 84 SGKDDVCACLLSAGAKSYATNS 105
K D+ L++ GA N+
Sbjct: 112 LKKLDIMKLLIARGADPDIPNT 133
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 47.9 bits (115), Expect = 9e-08
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVN 67
G TPL AA G+ ++ +LLL+ GADVN
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVN 29
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAKSYATN 104
G + LH AA +G +V LL AGA A +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 52.7 bits (127), Expect = 3e-07
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 22/158 (13%)
Query: 37 DEHGMTPLQHAAYKGNKQICQL--LLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLL 94
D G TPL A + + + LL G +N+ R+ +G + LH+AA+ C L+
Sbjct: 219 DMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA-RNRYGQTPLHYAAVFNNPRACRRLI 277
Query: 95 SAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPL 154
+ GA A +S G T + V NN + V L P + + A L
Sbjct: 278 ALGADINAVSSDGNTP---LSL---MVRNN-------NGRAVRAALAKNPSAETV-AATL 323
Query: 155 HTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSE 192
+T + P + ++ SLL E
Sbjct: 324 NTASVAGGDIPSDATRLCVAKVVLRGAF-----SLLPE 356
Score = 43.5 bits (103), Expect = 2e-04
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQI----CQLLLDHGADVNSGRHEHGYS 76
+V KLL + V+ D+ G TPL Y I +LLL GADVN+ +G +
Sbjct: 98 DVIKLLIKAGADVNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNA-LDLYGMT 154
Query: 77 ALHFAALSGKD---DVCACLLSAGAKSYATNSVGRTA 110
L L ++ ++ L+ AGA YA + R+
Sbjct: 155 PLA-VLLKSRNANVELLRLLIDAGADVYAVDDRFRSL 190
Score = 41.2 bits (97), Expect = 0.001
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 1 MSIPMEGNEIFDFI---SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQ---HAAYKGNKQ 54
+ I ME ++D++ S ++ V++LL+ V+ E+G TPL H + + K
Sbjct: 7 VDIIMEA-ALYDYLLNASNVTVEEVRRLLAAGA-DVNFRGEYGKTPLHLYLHYSSEKVKD 64
Query: 55 ICQLLLDHGADVNSGRHEHGYSALHFAALSG-KDDVCACLLSAGAKSYATNSVGRTA 110
I +LLL+ GADVN G++ LH + DV L+ AGA A + VGRT
Sbjct: 65 IVRLLLEAGADVN-APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTP 120
Score = 30.8 bits (70), Expect = 2.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
V LL + ++ + +G TPL +AA N + C+ L+ GAD+N
Sbjct: 239 LVLPLL-IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 52.4 bits (126), Expect = 4e-07
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 13 FISKN-DID--NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
I K DI+ N L + + +++ D +G TPL +A Y N + + LLD GA+ N
Sbjct: 162 LIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL- 220
Query: 70 RHEHGYSALHFAALSGKDDVCACLLSAGA 98
+++G + LH A L+ ++ LL+ G
Sbjct: 221 VNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Score = 48.9 bits (117), Expect = 4e-06
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYK--GNKQICQLLLDHGADVNSGRHE 72
+ D+ + KLL E+ V+ D +G+TPL +A K + I + LLD+GA+VN +
Sbjct: 81 NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD 140
Query: 73 HGYSALHFAALSGKDD--VCACLLSAGAKSYATNSV 106
G + LH S K D + L+ G A N V
Sbjct: 141 -GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRV 175
Score = 38.9 bits (91), Expect = 0.005
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNK---QICQLLLDHGADVNS------------ 68
+ L ++ V++ + G L H + NK +I +LL+D G D+N+
Sbjct: 125 EYLLDNGANVNIKNSDGENLL-HLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGV 183
Query: 69 ---GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA-----FVVVA 120
+ +G++ LH+A + + LL GA N G T +A +
Sbjct: 184 PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKL 243
Query: 121 VINNYIAKSEVDYYIV 136
++NN + + ++
Sbjct: 244 LLNNGPSIKTIIETLL 259
Score = 28.9 bits (65), Expect = 7.1
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+ + N+ + V K L + +L +++G TPL A NK+I +LLL++G +
Sbjct: 196 LHYAVYNNNPEFV-KYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 43.0 bits (102), Expect = 5e-06
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVN 67
G TPL AA GN ++ +LLLD GAD+N
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 30.6 bits (70), Expect = 0.090
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAK 99
G + LH AA +G +V LL GA
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 42.6 bits (101), Expect = 5e-06
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVN 67
G TPL AA GN ++ +LLL+HGAD+N
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 33.0 bits (76), Expect = 0.016
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 73 HGYSALHFAALSGKDDVCACLLSAGA 98
G + LH AA +G ++ LL GA
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGA 26
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 43.7 bits (103), Expect = 8e-05
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
N +F ++ K+DI+ V+K + DLY+ + L+ K N +I + L+++GADVN
Sbjct: 23 NPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKD--KVNVEILKFLIENGADVN 80
Query: 68 SGRHEHGYSALHFAALSGKD---DVCACLLSAGAKSYATNSVGRT 109
++ SALH K+ ++ L+ +G+ + G+
Sbjct: 81 FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN 125
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 43.7 bits (103), Expect = 2e-04
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 2 SIPMEGNE--IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHA-AYKGNKQICQL 58
+IP + N + + + V LL E+ D D+ G TPL + Y + I +L
Sbjct: 195 NIPDKTNNSPLHHAVKHYNKPIVHILL-ENGASTDARDKCGNTPLHISVGYCKDYDILKL 253
Query: 59 LLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
LL+HG DVN+ + G +ALH + S + LL GA + NS T A
Sbjct: 254 LLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGADINSLNSYKLTPLSSA 307
Score = 39.9 bits (93), Expect = 0.003
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 54 QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
+I +LLL +GAD+N G +ALH+A + + LLS GA
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN 193
Score = 38.3 bits (89), Expect = 0.009
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
GN + ++N + +LL + V++ D+ +PL HA NK I +LL++GA
Sbjct: 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227
Query: 67 NSGRHEHGYSALHFAALSGKD-DVCACLLSAG----AKSYATN 104
++ R + G + LH + KD D+ LL G AKSY
Sbjct: 228 DA-RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 39.9 bits (93), Expect = 0.003
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
I DI+ ++K++ +++ + TPL A G+ +I +L + HGAD+N
Sbjct: 9 IYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN 62
Score = 36.1 bits (83), Expect = 0.047
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNK-QICQLLLDHGADVNSGRHE 72
I K D+++++ L E+ V++ D++G P+ H A K N I +LLL+ GA N +
Sbjct: 132 IKKGDLESIKMLF-EYGADVNIEDDNGCYPI-HIAIKHNFFDIIKLLLEKGAYANV-KDN 188
Query: 73 HGYSALHFAALSG 85
+G S LH AA G
Sbjct: 189 NGESPLHNAAEYG 201
Score = 34.9 bits (80), Expect = 0.093
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
G K++ ++ KLL E ++ D +G +PL +AA G+ +LL+DHG +
Sbjct: 157 GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI 216
Query: 67 NSGRHEHGYSALHFAALSGKDDV 89
+ ++G++ LH A + + +
Sbjct: 217 -MNKCKNGFTPLHNAIIHNRSAI 238
Score = 33.8 bits (77), Expect = 0.20
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D ++ +L + + V++ D T L +A KG+ + ++L ++GADVN ++G +H
Sbjct: 105 DMIKTIL-DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI-EDDNGCYPIH 162
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
A D+ LL GA + ++ G + AA
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA 198
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 39.7 bits (93), Expect = 0.004
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 14 ISKNDIDNVQKLLSEHKLRVD--------LYDE------HGMTPLQHAAYKGNKQICQLL 59
IS +D V+ +L H L D+ G+T L AA++ N +I +LL
Sbjct: 89 ISLEYVDAVEAILL-HLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLL 147
Query: 60 LDHGADVN---------SGRHE----HGYSALHFAALSGKDDVCACLLSAGAKSYATNSV 106
L+ GA V + HG S L+ AA G + A L A +S+
Sbjct: 148 LERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSL 207
Query: 107 GRT 109
G T
Sbjct: 208 GNT 210
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 39.3 bits (91), Expect = 0.006
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+ ++L E V+ D + +TP+ +AA +GN ++ LLL +GADVN
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN 205
Score = 35.8 bits (82), Expect = 0.059
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
D V LL E V+ D TP+ +AA + N I LLD+GAD+ + + G +ALH
Sbjct: 356 DIVITLL-ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALH 413
Query: 80 FA 81
FA
Sbjct: 414 FA 415
Score = 30.0 bits (67), Expect = 3.8
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 55 ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
I ++LL+ GADVN+ + + + +H+AA G + LLS GA
Sbjct: 160 IAEMLLEGGADVNA-KDIYCITPIHYAAERGNAKMVNLLLSYGA 202
Score = 29.6 bits (66), Expect = 4.6
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNK-QICQLLLDHGADVNSGRHEHGYSAL 78
K L + V+ ++ TPL +A K K + ++LLD+GADVN+ ++ Y L
Sbjct: 426 KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLL 481
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 38.0 bits (88), Expect = 0.014
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
L A G+ ++LL GAD N R G + LH A +G V LL GA
Sbjct: 86 LCQLAASGDAVGARILLTGGADPNC-RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL 144
Query: 104 NSVGRTASQMA 114
+ G+T ++A
Sbjct: 145 DKDGKTPLELA 155
Score = 33.7 bits (77), Expect = 0.29
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV------- 89
D G TPL A G+ Q+ ++LL+ GAD + + G + L A +G +V
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFREVVQLLSRH 170
Query: 90 CACLLSAGAKSYATNSVGRTASQ 112
C GA + + G+ S
Sbjct: 171 SQCHFELGANAKPDSFTGKPPSL 193
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 36.6 bits (85), Expect = 0.029
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYK---GNKQICQLLLDHGADVNSGR 70
I+ N I + KLL + ++L +G++P+ Y N + + LL G +VN +
Sbjct: 82 ITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVK 141
Query: 71 HEHGYSALH--FAALSGKDDVCACLLSAGAKSYATNS 105
+ GY+ LH + S K DV LLS G + S
Sbjct: 142 NSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTS 178
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 36.4 bits (84), Expect = 0.041
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 8 NEIFDFISKNDIDNVQKLLS--EHKLRVDLYDEHGMTPLQHAAYKGNK---QICQLLLDH 62
++ +S I+N++ LL E+ L D+ G T LQ + +I +LLL+
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170
Query: 63 GADVNSGRHEHGYSALH 79
G D+N+ ++ Y LH
Sbjct: 171 GVDINTHNNKEKYDTLH 187
Score = 36.0 bits (83), Expect = 0.044
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
I DFI ID ++ DE G PL ++ N++I + LL G D+N
Sbjct: 241 ILDFIFSY-ID------------INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN 285
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 36.4 bits (84), Expect = 0.042
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1 MSIPMEGNEIFDFISK-NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLL 59
+S P ++ +K ND+ +++LL + L VD D G T LQ A + + + +LL
Sbjct: 616 ISDPHAAGDLLCTAAKRNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674
Query: 60 LDHGADV 66
+ +GADV
Sbjct: 675 IMNGADV 681
Score = 35.2 bits (81), Expect = 0.10
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Query: 30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSAL----------- 78
KL D+ D G TPL AA KG + +LL H +V+ R +G +AL
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNAISAKHHKI 606
Query: 79 -----HFAALS----GKDDVCAC-----------LLSAGAKSYATNSVGRTASQMA 114
HFA++S D +C LL G + + G TA Q+A
Sbjct: 607 FRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA 662
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 35.0 bits (80), Expect = 0.10
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD 88
D+ G PL A+ N +I +LL HGAD N+ + + L++ LSG DD
Sbjct: 69 DDDGNYPLHIASKINNNRIVAMLLTHGADPNAC-DKQHKTPLYY--LSGTDD 117
Score = 29.3 bits (65), Expect = 5.4
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQI--CQLLLDHG 63
+GN SK + + + +L H + D+ TPL + + ++ I LL+ +G
Sbjct: 71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG 130
Query: 64 ADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGR 108
A +N+ E G L A + V ++S G ++ + G+
Sbjct: 131 AKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGK 174
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 31.9 bits (73), Expect = 1.0
Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 370 GPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAIN---GHRGFADDT 426
S P A + ++ ++ A S+ G A D
Sbjct: 865 TGSYAPASDADLIAEAAASAAPAAPSAAPKEANSEAAPAPKEAHSSTELLELQLGEAADA 924
Query: 427 TPCVTCGEENATK--------KCAKCKTTRYC 450
C TCG TK C C +T C
Sbjct: 925 PLCPTCG----TKMVRNGSCYVCEGCGSTSGC 952
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 30.6 bits (69), Expect = 1.1
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 6 EGNEIFDFISKN----DIDNVQKLLS-EHKLRVDLYDEHGMTPLQHAAYKGN---KQICQ 57
EG I ++ +N D+ + +S E++ V Y+ HG + + ++ +
Sbjct: 16 EGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLK 75
Query: 58 LLLDHGADVNSGRHEHGYSALHFAALS 84
LL++ GAD+N G + LH A +
Sbjct: 76 LLMEWGADINGKERVFGNTPLHIAVYT 102
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 31.5 bits (71), Expect = 1.2
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQ-ICQLLLDHGADVNSGRHEHGYSALHFA 81
+++ D+ G T L H A + NKQ + LLL+ G+DVN R +GY+ + A
Sbjct: 445 INMIDKRGET-LLHKAVRYNKQSLVSLLLESGSDVNI-RSNNGYTCIAIA 492
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 31.5 bits (71), Expect = 1.4
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 13 FISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
I ++D+ ++ KL + ++ D+HG + L + + + + L+D+GAD+N
Sbjct: 383 SIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN 437
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 30.8 bits (70), Expect = 2.2
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 137 PRGLETTPKLDPILAEPLHT-FIMQVNIHPVRVAL---NLLPSLISHLPSVRKVVSLLSE 192
+ K+D LA PL V + P +L NLL LPS + V
Sbjct: 304 SAPPQFARKIDTKLAPPLFDLPNGGVGLAPPMKSLAFRNLLRGYRLGLPSGQAVA----- 358
Query: 193 KQMKAGPET-NEIIQGDK 209
+ + P T +E+ G+
Sbjct: 359 RALGIAPLTADELGDGED 376
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 30.0 bits (67), Expect = 3.0
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 2 SIPMEGNEIFDFISKNDID-NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
SI +I D I K D LSE+ PL +A N +LL+
Sbjct: 40 SIKFHYTDIIDAILKLGADPEAPFPLSENSK---------TNPLIYAIDCDNDDAAKLLI 90
Query: 61 DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK-SYATN 104
+GADVN E + L+ + L G LLS GA + TN
Sbjct: 91 RYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTN 135
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 30.3 bits (68), Expect = 3.4
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 18 DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN--KQICQLLLDHGADVNSGRHEHGY 75
DI V L + +++ D G T L + N I +LL ++G D+N G
Sbjct: 296 DISVVYSFL-QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE-PDNIGN 353
Query: 76 SALH--FAALSGKD------------DVCACLLSAGAKSYATNSVGRT 109
+ LH + LS + DV CL+S GA A N +G T
Sbjct: 354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYT 401
>gnl|CDD|113116 pfam04333, VacJ, VacJ like lipoprotein. VacJ is required for the
intercellular spreading of Shigella flexneri. It is
attached to the outer membrane by a lipid anchor.
Length = 200
Score = 29.2 bits (66), Expect = 3.9
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 145 KLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVS-LLSEKQMKAGPETN 202
LD + P+ + V PVR ++ + ++L +V+ LL K KA N
Sbjct: 22 VLDRYVLRPVAVGYVNVVPKPVRSGVS---NFFNNLGEPATMVNNLLQGKPKKAMVHFN 77
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 28.6 bits (64), Expect = 5.3
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 36 YDEHGMTPLQHAA-YKGNKQI--CQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
YD HG A Y + +LL++ GAD+N+ G + LH AA + ++
Sbjct: 53 YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEW 112
Query: 93 LL-SAGAKSYATNSVGRTASQMAAF 116
L G A N TA +A
Sbjct: 113 LCRQLGVNLGAINYQHETAYHIAYK 137
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 29.6 bits (66), Expect = 5.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 21 NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
+V +LS++ +D+ D T L +A N Q + LL++GA VN+
Sbjct: 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT 490
>gnl|CDD|221366 pfam11996, DUF3491, Protein of unknown function (DUF3491). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 286 to 3225 amino acids in length.
This protein is found associated with pfam04488. This
protein is found associated with pfam04488.
Length = 934
Score = 29.3 bits (66), Expect = 6.0
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 148 PILAEPLHTFIMQVNIHPVRVAL---NLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEI 204
PILA H FI + + + L L + I V++ S + + T+ +
Sbjct: 660 PILASDPHRFINPSYRNHLELFLGEGTLNLAEI-----VQEFSSTSKIVESQEDKTTHRL 714
Query: 205 IQ--GDKPCDLVEL 216
+Q KP +L L
Sbjct: 715 LQPKTYKPSNLAVL 728
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 28.1 bits (62), Expect = 7.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDH----GADVNSGRHEHGYSALHFAA 82
D+ G + AA K Q+ ++DH GAD+N+ G +ALH AA
Sbjct: 57 DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAA 106
>gnl|CDD|193531 cd05654, M20_ArgE_RocB, M20 Peptidase Arginine utilization protein,
RocB. Peptidase M20 family, ArgE RocB (Arginine
utilization protein, RocB; arginine degradation protein,
RocB) subfamily. This group of proteins is possibly
related to acetylornithine deacetylase (ArgE) and may be
involved in the arginine and/or ornithine degradation
pathway. In Bacillus subtilis, RocB is one of the three
genes found in the rocABC operon, which is sigma L
dependent and induced by arginine. The function of
members of this family is as yet unknown, although they
are predicted as deacetylases.
Length = 535
Score = 28.7 bits (65), Expect = 8.1
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 226 HGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIR 277
GE+ +A FI + ++E PY ++ + +L + + G K V ++
Sbjct: 20 EGEREIADFIYEYLKEIPYFKENPE-----QLGRQPLENDPLGRKNVFALVK 66
>gnl|CDD|239239 cd02929, TMADH_HD_FMN, Trimethylamine dehydrogenase (TMADH) and
histamine dehydrogenase (HD) FMN-binding domain. TMADH
is an iron-sulfur flavoprotein that catalyzes the
oxidative demethylation of trimethylamine to form
dimethylamine and formaldehyde. The protein forms a
symetrical dimer with each subunit containing one 4Fe-4S
cluster and one FMN cofactor. It contains a unique
flavin, in the form of a 6-S-cysteinyl FMN which is
bent by ~25 degrees along the N5-N10 axis of the flavin
isoalloxazine ring. This modification of the
conformation of the flavin is thought to facilitate
catalysis.The closely related histamine dehydrogenase
catalyzes oxidative deamination of histamine.
Length = 370
Score = 28.9 bits (65), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 16 KNDIDNVQKLLSEHKLR--------VDLYDEHGMTPLQHAAYKGNKQI 55
K+DI V++ + LR V +Y HG PLQ + NK+
Sbjct: 142 KDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRT 189
>gnl|CDD|219167 pfam06770, Arif-1, Actin-rearrangement-inducing factor (Arif-1).
This family consists of several Nucleopolyhedrovirus
actin-rearrangement-inducing factor (Arif-1) proteins.
In response to Autographa californica multicapsid
nuclear polyhedrosis virus (AcMNPV) infection, a
sequential rearrangement of the actin cytoskeleton
occurs this is induced by Arif-1. Arif-1 is tyrosine
phosphorylated and is located at the plasma membrane as
a component of the actin rearrangement-inducing complex.
Length = 201
Score = 28.1 bits (63), Expect = 8.4
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 332 CGEENATKKCAKCKTTRYCD 351
C N KKC C+ Y D
Sbjct: 146 CFYRNFYKKCVGCRNEYYHD 165
Score = 28.1 bits (63), Expect = 8.4
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 432 CGEENATKKCAKCKTTRYCD 451
C N KKC C+ Y D
Sbjct: 146 CFYRNFYKKCVGCRNEYYHD 165
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 28.6 bits (64), Expect = 9.7
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 492 VNGTAGEEKPVTKEDKREEKEDGVKPESKKIEGSSIE 528
+ +E EE+++ K ++KK++ ++ E
Sbjct: 47 KKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,230,342
Number of extensions: 2484186
Number of successful extensions: 2263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2229
Number of HSP's successfully gapped: 80
Length of query: 534
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 433
Effective length of database: 6,457,848
Effective search space: 2796248184
Effective search space used: 2796248184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)