RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2859
(534 letters)
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 98.4 bits (246), Expect = 4e-23
Identities = 29/102 (28%), Positives = 44/102 (43%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
N + + + +L+++ + G TPL A + ++ +LL D GAD+N G
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH A + V LL AGA A GRT A
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234
Score = 88.8 bits (221), Expect = 7e-20
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
D + V+ L ++ + G TPL A + +LLL GAD + R G
Sbjct: 168 HKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGG 225
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ L A L + L + GA + +
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266
Score = 84.9 bits (211), Expect = 1e-18
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 16 KNDIDNVQKLLSE--HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
+ LL +DL ++ G T L AA G + L GA V
Sbjct: 19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERG 77
Query: 74 GYSALHFAALSGKDDVCACLLSAGA 98
G++ALH A LL
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRP 102
Score = 80.3 bits (199), Expect = 5e-17
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNS--GRHEHGYSALHFAALSGKDDVCACLL 94
E G T L A ++ LL A +++ G +ALH AA+ G+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 95 SAGAKSYATNSVGRTASQMAAF 116
+AGA G TA +A
Sbjct: 66 AAGAGVLVAERGGHTALHLACR 87
Score = 75.7 bits (187), Expect = 2e-15
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ +V +LL + G TPL A + N + +LL HGA
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE-DGGDK 258
Query: 75 YSALHFAALSGKDDV 89
S + D
Sbjct: 259 LSPCSSSGSDSDSDN 273
Score = 73.7 bits (182), Expect = 8e-15
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 14/115 (12%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ V+KL + V + + G T L A +LL +
Sbjct: 54 ILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112
Query: 75 YS-------------ALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ A + + +++ + A N G T +A
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167
Score = 66.4 bits (163), Expect = 2e-12
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 17 NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGY 75
+ D L++ + D + P + + D + + + G+
Sbjct: 104 HPRDASDTYLTQSQ---DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGH 159
Query: 76 SALHFAALSGKDDVCACLLSAGA-KSYATNSVGRTASQMAA 115
+ LH A + ++ L AGA + + GRT +A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200
Score = 36.4 bits (85), Expect = 0.019
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG 63
+LL H ++P + + ++
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 94.4 bits (236), Expect = 5e-23
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ D+ V++LL + D + G T LQ + G+ I LL GA N + G
Sbjct: 11 ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV-QDTSG 68
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
S +H AA +G D L+ GA + G +A
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110
Score = 85.2 bits (212), Expect = 8e-20
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+LL ++ D G +P+ AA G ++L++HGADVN G
Sbjct: 44 MFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTG 101
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+H A G V + L + + + ++ G T ++A
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQ 142
Score = 67.8 bits (167), Expect = 9e-14
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+D ++ L+ H V++ D G P+ A +G+ + L +D++ R G
Sbjct: 77 RTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR-RDARG 133
Query: 75 YSALHFAALSGKDDVCACLLS 95
+ L A G D+ L
Sbjct: 134 LTPLELALQRGAQDLVDILQG 154
Score = 67.1 bits (165), Expect = 2e-13
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 40 GMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
L AA +G+ +++ +LL ++ + G +AL G + LL GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQVMM-FGSTAIALELLKQGA 59
Query: 99 KSYATNSVGRTASQMAAF 116
++ G + AA
Sbjct: 60 SPNVQDTSGTSPVHDAAR 77
Score = 40.9 bits (97), Expect = 2e-04
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
L+ + D G+TPL+ A +G + + +L H
Sbjct: 118 SFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 94.5 bits (236), Expect = 1e-22
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
K D + +LL VD DE+G T L A G+ + +LL + GAD++ G
Sbjct: 53 RKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ALH AA + +V L+ GA + G TA ++A
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
Score = 79.8 bits (198), Expect = 1e-17
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 24 KLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
+LL+E +D D G+T L AA ++ + L++ GAD+ E G +AL A
Sbjct: 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAR 151
Query: 83 LSGKDDVCACLLSAGAK 99
K + G +
Sbjct: 152 EILKTTPKGNPMQFGRR 168
Score = 65.2 bits (160), Expect = 2e-12
Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 5/80 (6%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
G G+ ADV + AA + + LL
Sbjct: 11 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLE- 65
Query: 97 GAKSYATNSVGRTASQMAAF 116
A + GRTA A
Sbjct: 66 DRDVDAVDENGRTALLFVAG 85
Score = 52.5 bits (127), Expect = 4e-08
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+ L E +++ DE G+T L+ A + G +
Sbjct: 127 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170
Score = 30.9 bits (71), Expect = 0.69
Identities = 8/55 (14%), Positives = 10/55 (18%), Gaps = 3/55 (5%)
Query: 61 DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ + S G G A S T AA
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAA 52
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 93.3 bits (233), Expect = 3e-22
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ + V+ L + ++ D+HG +PL A +G + ++L+ GA +N +
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDD 73
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH AA G D+ LL A A N G A F
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 114
Score = 91.0 bits (227), Expect = 2e-21
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
++L R+++ + TPL AA G++ I Q LL + AD+N+ +EHG LH+A
Sbjct: 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACF 114
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
G+D V L++ GA N G A
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 84.8 bits (211), Expect = 2e-19
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S D VQKLL +K ++ +EHG PL +A + G Q+ + L+ +GA V+ +++G
Sbjct: 81 SHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYG 138
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
+ A ++ + G
Sbjct: 139 EMPVDKAKAPLRELLRERAEKMGQ 162
Score = 81.7 bits (203), Expect = 3e-18
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
M + +GN +L LD+ D+N +HG+S LH+A G+ V L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 96 AGAKSYATNSVGRTASQMAAF 116
GA+ N T +AA
Sbjct: 61 RGARINVMNRGDDTPLHLAAS 81
Score = 52.8 bits (128), Expect = 3e-08
Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+ L++ + V + +++G P+ A + + + G ++N
Sbjct: 115 WGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 96.8 bits (242), Expect = 4e-22
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+LL V+ ++ MTPL AA + + + ++L HGA +N+ G +ALH AAL
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA-LDSLGQTALHRAAL 289
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVD 132
+G C LLS G+ + G TA+QM V +++ D
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSD 338
Score = 95.6 bits (239), Expect = 1e-21
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ + + LL+ + D TPL AA +I QLLL HGADV++ + + G
Sbjct: 33 RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGG 91
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
LH A G +V LL GA A + T AA
Sbjct: 92 LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133
Score = 91.0 bits (227), Expect = 3e-20
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
N + VQ LL H V D+ G+ PL +A G+ ++ +LLL HGA VN+ +
Sbjct: 68 YNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQF 125
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH AA + +VC+ LLS GA N G++A MA
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166
Score = 86.4 bits (215), Expect = 1e-18
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG---NKQICQLLLDHGADVNSGRH 71
+ D+ V+K L+ + + T L A KQ+ +LLL GA+VN ++
Sbjct: 187 READLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KN 244
Query: 72 EHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ + LH AA +DV L GAK A +S+G+TA AA
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Score = 84.1 bits (209), Expect = 6e-18
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAA 82
L++ + L E+ L AA GN +++ LL + ++ + LH AA
Sbjct: 8 LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA-SDGRKSTPLHLAA 66
Query: 83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ + LL GA +A + G A
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99
Score = 82.2 bits (204), Expect = 3e-17
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S + + LL H V+ D TPL AA K ++C LLL HGAD + HG
Sbjct: 100 SYGHYEVTELLLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL-VNCHG 157
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
SA+ A + +
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHS 181
Score = 77.9 bits (193), Expect = 7e-16
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ D ++ L H +++ D G T L AA G+ Q C+LLL +G+D + G
Sbjct: 256 ERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI-ISLQG 313
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT--ASQ 112
++A + +LS ++ R AS+
Sbjct: 314 FTAAQMGN-----EAVQQILSESTPMRTSDVDYRLLEASK 348
Score = 67.5 bits (166), Expect = 2e-12
Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 24/125 (19%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH- 73
SKN ++ LLS H L + HG + + A ++ + + + R
Sbjct: 133 SKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL 191
Query: 74 -------------------GYSALHFAALSGKD---DVCACLLSAGAKSYATNSVGRTAS 111
+ALH A S V LL GA N T
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251
Query: 112 QMAAF 116
+AA
Sbjct: 252 HVAAE 256
Score = 51.0 bits (123), Expect = 5e-07
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 38 EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG-KDDVCACLLSA 96
E G + L L D A E+ L AA SG ++ + A L
Sbjct: 2 EFGKSAL-------------DLADPSAKAVL-TGEYKKDELLEAARSGNEEKLMALLTPL 47
Query: 97 GAKSYATNSVGRTASQMAAF 116
+A++ T +AA
Sbjct: 48 NVNCHASDGRKSTPLHLAAG 67
Score = 30.5 bits (70), Expect = 1.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 20 DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN 52
+ VQ++LS + D L A+ G+
Sbjct: 322 EAVQQILS-ESTPMRTSDVDY--RLLEASKAGD 351
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 92.1 bits (230), Expect = 5e-22
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ ++D +++ L + V+ DE G TPL A+ G + + LL+ GAD + +
Sbjct: 11 AQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-KER 69
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
SAL A+ G D+ LL + G T A
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110
Score = 89.8 bits (224), Expect = 3e-21
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
LL E + +++YD +G TPL +A + + + LL GAD+ + + GY+ + A
Sbjct: 86 GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVA 144
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRT 109
G V + + K + +N V
Sbjct: 145 LGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 84.8 bits (211), Expect = 2e-19
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+ L E + + + L A+ G I LLL+ D+N +G + L +A
Sbjct: 53 RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVR 111
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
LL+ GA G T +A
Sbjct: 112 GNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144
Score = 77.1 bits (191), Expect = 9e-17
Identities = 15/77 (19%), Positives = 31/77 (40%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
+ A +G + L G ++ + E G++ L +A+ G+ + LL GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 100 SYATNSVGRTASQMAAF 116
+ +A +A+
Sbjct: 62 PHILAKERESALSLAST 78
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 94.4 bits (236), Expect = 5e-22
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ ++ V L++ + +D H TPL A + + LL+ GADVN G+
Sbjct: 110 RRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK--GQ 166
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
S LH A + +++ L+ GA + A N+ G+ ++
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVP 207
Score = 90.2 bits (225), Expect = 2e-20
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+++ L+S V++ ++PL A G+ ++LL HGA VN
Sbjct: 12 IHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADW 69
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ L A +SG D LL GA + + AA
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAAR 110
Score = 88.3 bits (220), Expect = 7e-20
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
K+L +H +V+ TPL +A G+ LLL HGA V S +H AA
Sbjct: 53 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAAR 110
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G + L++ G S T +A
Sbjct: 111 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
Score = 81.7 bits (203), Expect = 1e-17
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
+P+ AA G++ + L+ G VN S LH A L G LL GA+
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 100 SYATNSVGRTASQMAAF 116
+ T A
Sbjct: 62 VNGVTADWHTPLFNACV 78
Score = 81.7 bits (203), Expect = 1e-17
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+ +PL A ++++ LL+D GAD + ++ G + + L
Sbjct: 163 GKGQDSPLHAVARTASEELACLLMDFGADTQA-KNAEGKRPVELVPPES--PLAQLFLER 219
Query: 97 GAKSYATNSVGRTASQMAA 115
+
Sbjct: 220 EGPPSLMQLCRLRIRKCFG 238
Score = 75.9 bits (188), Expect = 1e-15
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 3/78 (3%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
LL + + G P++ + + QL L+ + +
Sbjct: 183 CLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSL-MQLCRLRIRKCFGI 239
Query: 84 SGKDDVCACLLSAGAKSY 101
+ +L K +
Sbjct: 240 QQHHKITKLVLPEDLKQF 257
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 95.3 bits (238), Expect = 5e-22
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ + + ++ L+ + + + G T L AA KG ++ +LL+ DVN + G
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDG 232
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
++ LH AA GK++ C L+ A N VG+TA +A
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273
Score = 94.1 bits (235), Expect = 2e-21
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S D + V +LL ++ + G+T L A N + + L+++GA++N G
Sbjct: 49 SSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEG 106
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH AA G D+ L+S GA A NS G T +A
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148
Score = 79.5 bits (197), Expect = 2e-16
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+++ + + + + + G A G+ + LL+ GAD+N + G
Sbjct: 18 IGSETDLEPPVV-KRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINY-ANVDGL 74
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ALH A + D+ L+ GA ++ G AA
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115
Score = 74.1 bits (183), Expect = 1e-14
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+K + ++ L+ + V++ D G TPL AA+ G ++ C++L+++ D+ + ++ G
Sbjct: 208 AKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA-VNKVG 265
Query: 75 YSALHFAALSGKDDVCACLLSAGAK 99
+A A +
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLL 290
Score = 73.7 bits (182), Expect = 1e-14
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+++D V+ L+ + ++ D G PL AA G I + L+ GA V + + G
Sbjct: 82 IDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEG 139
Query: 75 YSALHFAALSGKDDVCACLLSAGAK 99
+ L A +++ ++
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGV 164
Score = 72.1 bits (178), Expect = 4e-14
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 8/101 (7%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ + +Q ++ + + Q L + + G
Sbjct: 149 EAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDARQWLNSGHINDVR-HAKSGG 200
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ALH AA G +V L+ A + G T AA
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Score = 66.4 bits (163), Expect = 3e-12
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
+ + D Q + G++ + + + A SG +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLR 58
Query: 93 LLSAGAKSYATNSVGRTASQMAAF 116
LL GA N G TA A
Sbjct: 59 LLERGADINYANVDGLTALHQACI 82
Score = 44.0 bits (105), Expect = 6e-05
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
++L E+ ++ ++ G T A + +L + R +
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 90.6 bits (226), Expect = 7e-22
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
K DI +V+ LL + ++ D G TPL A G+ ++ +LLL H A VN+
Sbjct: 19 IKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQN 76
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
S LH AA +G D+ LLS GA A N G
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Score = 83.6 bits (208), Expect = 2e-19
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+ G T L A+ KG+ + LL +G+D N + G++ LH A G V LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 97 GAKSYATNSVGRTASQMAA 115
A T + AA
Sbjct: 66 KALVNTTGYQNDSPLHDAA 84
Score = 75.5 bits (187), Expect = 1e-16
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+LL +HK V+ +PL AA G+ I +LLL +GA N+ + G + +
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDD 118
Query: 84 SGKDDVCACLLSAGA 98
+ +
Sbjct: 119 ESMKSLLLLPEKNES 133
Score = 44.7 bits (107), Expect = 7e-06
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
KLL + + + G+ P+ + + K + L + + S
Sbjct: 93 KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 93.4 bits (233), Expect = 8e-22
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
K D + +LL VD DE+G T L A G+ + +LL + GAD++ G
Sbjct: 54 RKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 111
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ALH AA + +V L+ GA + G TA ++A
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
Score = 82.7 bits (205), Expect = 5e-18
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 24 KLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
+LL+E +D D G+T L AA ++ + L++ GAD+ E G +AL A
Sbjct: 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAR 152
Query: 83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVIN 123
K + G + + Q+ + V I
Sbjct: 153 EILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV 193
Score = 64.2 bits (157), Expect = 1e-11
Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 5/80 (6%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
G G+ ADV + AA + + LL
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLE- 66
Query: 97 GAKSYATNSVGRTASQMAAF 116
A + GRTA A
Sbjct: 67 DRDVDAVDENGRTALLFVAG 86
Score = 60.3 bits (147), Expect = 2e-10
Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 21/97 (21%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG-------------- 69
+ L E +++ DE G+T L+ A + G +
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYA 187
Query: 70 -------RHEHGYSALHFAALSGKDDVCACLLSAGAK 99
+ G + D A+
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224
Score = 50.3 bits (121), Expect = 4e-07
Identities = 6/57 (10%), Positives = 12/57 (21%), Gaps = 3/57 (5%)
Query: 29 HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG 85
+ G +K + H A+ + L +A
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV---AKDYEDGLEYAVAES 241
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 89.0 bits (222), Expect = 2e-21
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
D+D V+ ++ V+ E G PL +AA G +I + LL GAD+N+ +H
Sbjct: 17 NGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHI 74
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ L A G LLS GA G TA +
Sbjct: 75 TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114
Score = 75.5 bits (187), Expect = 1e-16
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
A G+ + + G DVN E G LH+AA G+ ++ LL GA
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 99 KSYATNSVGRTASQMAAF 116
A + T A +
Sbjct: 65 DINAPDKHHITPLLSAVY 82
Score = 67.8 bits (167), Expect = 4e-14
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+ L ++ D+H +TPL A Y+G+ +LLL GAD + G +A
Sbjct: 57 EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDN 115
Query: 84 SGKDDV 89
+
Sbjct: 116 QAIKAL 121
Score = 31.6 bits (73), Expect = 0.21
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQ 57
KLL + G+T + + K + Q
Sbjct: 90 KLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 96.0 bits (240), Expect = 2e-21
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ V +L +H + VD G TPL A++ GN ++ + LL H ADVN+ + + G
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLG 344
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
YS LH AA G D+ LL GA +S G T +A
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386
Score = 95.6 bits (239), Expect = 2e-21
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+LL E + ++G+TPL A + N I +LLL G +S +GY+ LH AA
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAK 221
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ +V LL G + A + G T +AA
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Score = 94.5 bits (236), Expect = 5e-21
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ V+ LL ++ + TPL AA G+ ++ + LL + A VN+ + +
Sbjct: 23 FMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDD 80
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH AA G ++ LL A + G T +AA
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Score = 94.5 bits (236), Expect = 6e-21
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ + LL +K +V+ + TPL AA G+ + +LLL++ A+ N G
Sbjct: 56 RAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-ATTAG 113
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ LH AA G + LL A G T +AA
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 155
Score = 94.1 bits (235), Expect = 7e-21
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
N++D V+ LL +G TPL AA + ++ + LL +G N+ G
Sbjct: 188 HHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-ESVQG 245
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH AA G ++ A LLS A N G T + A
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287
Score = 91.8 bits (229), Expect = 5e-20
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ ++ V LL + + G TPL AA G ++ +LLL+ A N+ ++G
Sbjct: 123 EGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGL 180
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH A D+ LL G ++ G T +AA
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221
Score = 91.0 bits (227), Expect = 8e-20
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
E G+TPL A++ G+ I + LL GA N + + LH AA +G +V
Sbjct: 7 GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKY 65
Query: 93 LLSAGAKSYATNSVGRTASQMAA 115
LL AK A +T AA
Sbjct: 66 LLQNKAKVNAKAKDDQTPLHCAA 88
Score = 91.0 bits (227), Expect = 8e-20
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ + V LLS + +L ++ G+TPL A +G+ + +L+ HG V++ GY
Sbjct: 255 EGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGY 312
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH A+ G + LL A A +G + AA
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353
Score = 90.2 bits (225), Expect = 1e-19
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+N ++ + LL + + G+TPL AA +G+ ++ LLL A+ N ++ G
Sbjct: 222 QNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGL 279
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ LH A G V L+ G AT +G T +A+
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Score = 80.6 bits (200), Expect = 2e-16
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+I V+ LL H+ V+ + G +PL AA +G+ I LLL +GA N G
Sbjct: 320 HYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE-VSSDG 377
Query: 75 YSALHFAALSGKDDVCACL---LSAGAKSYATNSVGRTASQMA 114
+ L A G V L + ++ + +
Sbjct: 378 TTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 52.5 bits (127), Expect = 2e-07
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 62 HGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
G E G + LH A+ G + LL GA +N T MAA
Sbjct: 3 PGISGGG-GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA 55
Score = 41.7 bits (99), Expect = 5e-04
Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 28/80 (35%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLL--------------- 59
+ D V LL + + G TPL A G + +L
Sbjct: 353 QQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411
Query: 60 ------------LDHGADVN 67
LD D
Sbjct: 412 HRMSFPETVDEILDVSEDEG 431
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 93.3 bits (233), Expect = 2e-21
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ ++ V L++ + +D H TPL A + + LL+ GADVN G+
Sbjct: 166 RRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK--GQ 222
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
S LH + +++ L+ GA + A N+ G+ ++
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264
Score = 91.8 bits (229), Expect = 8e-21
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+++ L+S V++ ++PL A G+ ++LL HGA VN
Sbjct: 68 IHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADW 125
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ L A +SG D LL GA + + AA
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAAR 166
Score = 86.0 bits (214), Expect = 6e-19
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
K+L +H +V+ TPL +A G+ LLL HGA V S +H AA
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAAR 166
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
G + L++ G S T +A
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 198
Score = 84.1 bits (209), Expect = 3e-18
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 25 LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
L + L D +P+ AA G++ + L+ G VN S LH A L
Sbjct: 46 RLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLG 102
Query: 85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G LL GA+ + T A
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134
Score = 73.7 bits (182), Expect = 1e-14
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+ +PL ++++ LL+D GAD + ++ G + L
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQA-KNAEGKRPVELVPPESPLAQL-FLERE 276
Query: 97 GA 98
GA
Sbjct: 277 GA 278
Score = 61.4 bits (150), Expect = 1e-10
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 14/107 (13%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYD-----EHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
S + + L+ + D G P + G LL + ++
Sbjct: 4 SHHHHHHSSGLVP-RGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA- 56
Query: 70 RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+S +H AA+ G L+S G + + A
Sbjct: 57 --VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101
Score = 54.8 bits (133), Expect = 2e-08
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 11/74 (14%)
Query: 47 AAYKGNKQICQLLLDHGADVNS----GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYA 102
+ + L+ G+ + S G G LLS A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDA 56
Query: 103 TNSVGRTASQMAAF 116
+ + AA
Sbjct: 57 VS--DWSPMHEAAI 68
Score = 44.8 bits (107), Expect = 3e-05
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
LL + + G P++ + L GA +
Sbjct: 239 CLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 91.7 bits (229), Expect = 3e-21
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 16 KNDIDNVQKLLS---EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
++ LL L ++ + G+T L A ++ QLLL+ GAD+++ +
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G S L A + + LL GA A G +A A+
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 192
Score = 88.7 bits (221), Expect = 4e-20
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 16 KNDIDNVQKLLS---EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
+ ++ V +L++ + +D+Y+ TPL A + +LL+ GA +
Sbjct: 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDR 77
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAKSY----ATNSVGRTASQMAAF 116
HG +A H A LL + A A N G TA +A
Sbjct: 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Score = 84.8 bits (211), Expect = 7e-19
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEH-GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ VQ LL +D D G +PL HA + + QLLL HGA+VN+ + G
Sbjct: 126 TECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSG 183
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
SALH A+ G + L+ +GA S N T +A
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
Score = 79.8 bits (198), Expect = 4e-17
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
N + VQ LL H V+ G + L A+ +G + + L+ GAD + ++ H
Sbjct: 160 NNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL-KNCHND 217
Query: 76 SALHFAALSGKDDVCACLLSAGA 98
+ L A D+ + A
Sbjct: 218 TPLMVARSRRVIDILRGKATRPA 240
Score = 77.5 bits (192), Expect = 3e-16
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLD----HGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
DE G TPL A +GN L++ G +++ + + LH A ++ V
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRL 64
Query: 93 LLSAGAKSYATNSVGRTASQMAAF 116
L++AGA A + G+TA+ +A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACE 88
Score = 76.0 bits (188), Expect = 9e-16
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA----DVNSGRH 71
V+ L++ D HG T A + + LLD A D+ + R+
Sbjct: 56 TTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RN 113
Query: 72 EHGYSALHFAALSGKDDVCACLLSAGAKSYATNS-VGRTASQMAAF 116
G +ALH A + + LL GA A + GR+ A
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 89.4 bits (223), Expect = 4e-21
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
D++ V+KL + + + TPL AA + + LL HGADV++ + + G
Sbjct: 17 KAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGG 75
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
LH A G +V L+ GA + T AA
Sbjct: 76 LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Score = 87.4 bits (218), Expect = 2e-20
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
N + V+ LL H V D+ G+ PL +A G+ ++ +LL+ HGA VN
Sbjct: 51 GYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWK 108
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
++ LH AA GK ++C LL GA N G T +
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 75.1 bits (186), Expect = 4e-16
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S + + L+ H V++ D TPL AA KG +IC+LLL HGAD ++ G
Sbjct: 84 SYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-KNRDG 141
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
+ L G D+ L A
Sbjct: 142 NTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 72.0 bits (178), Expect = 4e-15
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLD-HGADVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
+ L AA G+ + + L + + LHFAA + V LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 96 AGAKSYATNSVGRTASQMAAF 116
GA +A + G A
Sbjct: 64 HGADVHAKDKGGLVPLHNACS 84
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 88.6 bits (221), Expect = 7e-21
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ ++ + + + ++ DE G TPL AA G + + LL +GAD +
Sbjct: 12 AQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGR 69
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
SAL A G D+ LL G + G T A
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 111
Score = 86.3 bits (215), Expect = 5e-20
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+ L ++ L + + L A KG I ++LLD G DVN +G + L +A
Sbjct: 53 EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVH 111
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
LL +GA G + +A
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144
Score = 83.2 bits (207), Expect = 5e-19
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+ A +G ++ +N E G++ L +AA G+ V LL GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 99 KSYATNSVGRTASQMAAF 116
+A +A
Sbjct: 61 DPQLLGKGRESALSLACS 78
Score = 82.8 bits (206), Expect = 7e-19
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
K+L + + V+ YD +G TPL +A + + + ++LL+ GAD + GY+++ A
Sbjct: 86 KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVA 144
Query: 84 SGKDDVCACLLSAGAK 99
G V + S K
Sbjct: 145 LGYRSVQQVIESHLLK 160
Score = 54.3 bits (132), Expect = 7e-09
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
N + V+ LL + + G + A G + + Q++ H +
Sbjct: 111 HGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 90.6 bits (226), Expect = 7e-21
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ ++L+ V D+ +T L AA + + + GA V+ +
Sbjct: 19 YGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS 77
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH+A G + L+ GA + G + +AA
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Score = 90.6 bits (226), Expect = 9e-21
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAA 82
L VD+ D++GMTPL AAY+ + +LLL VN G H +ALH+A
Sbjct: 126 AYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV 185
Query: 83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
L+G V + LL AGA A N G +A +A
Sbjct: 186 LAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Score = 83.3 bits (207), Expect = 3e-18
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
+ D++ + A G + C+ L++ G DV + + LH+AA++ + D+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ-PDKENVTLLHWAAINNRIDLVKY 60
Query: 93 LLSAGA-KSYATNSVGRTASQMAAF 116
+S GA + T A
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATR 85
Score = 80.2 bits (199), Expect = 3e-17
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
L ++ L D G + + AA G+ I L+ G DV+ ++G + L +AA
Sbjct: 93 VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAY 151
Query: 84 SG-KDDVCACLLSAGA-KSYATNSVGRTASQMAAF 116
D LL+ + TA A
Sbjct: 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186
Score = 76.3 bits (189), Expect = 6e-16
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 24 KLLSEHKLRVDLYDE-HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
+LL + V+L D+ H T L A GN + LLL+ GA+V++ ++ G SAL A
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QNIKGESALDLAK 218
Query: 83 LSGKDDVCACLLSAGAKSYATN 104
+ L A N
Sbjct: 219 QRKNVWMINHLQEARQAKGYDN 240
Score = 49.4 bits (119), Expect = 7e-07
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+ + LL VD + G + L A + N + L +
Sbjct: 186 LAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 90.6 bits (226), Expect = 8e-21
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
K + VQ LLS ++ V+ D+ G TP+ A + + +LLL G+D+N R
Sbjct: 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEEN 145
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
LH+AA SG D+ LL+A +A N G + +AA
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Score = 87.9 bits (219), Expect = 7e-20
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+D V+ LLS +++ D L AA+ G I ++LL D+++ + HG
Sbjct: 120 EYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-VNIHG 177
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
S LH AA + D LS + N G T Q A+
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 87.1 bits (217), Expect = 1e-19
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
+ ++ +PL AA G+ IC +L+ GA++++ E + L AA + +
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKY 62
Query: 93 LLSAGAKSYATNSVGRTASQMAAF 116
L+ AGA ++ G T +AA
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAK 86
Score = 86.3 bits (215), Expect = 3e-19
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+D L+ +D E TPL AA + + + L+ GA V+ + G
Sbjct: 20 EAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEG 77
Query: 75 YSALHFAALSGKDDVCACLLSAGAKS-YATNSVGRTASQMAAF 116
+ LH AA G +V LLS G + G T A
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Score = 78.6 bits (195), Expect = 9e-17
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ + ++ ++L K + + HG +PL AA + L L +DV +++ G
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL-KNKEG 210
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
+ L A+L+ + + A
Sbjct: 211 ETPLQCASLNSQVWSALQMSKALQ 234
Score = 47.4 bits (114), Expect = 3e-06
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
+N D V LS V L ++ G TPLQ A+ + D
Sbjct: 186 RENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 89.6 bits (223), Expect = 1e-20
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHG 74
+ ++ +++ L +++ V+ D+ G T L A + G+K I ++L ++N +++ G
Sbjct: 83 RGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLG 140
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ALH AA G D+ LL+ GA++ N + A MA
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181
Score = 88.5 bits (220), Expect = 3e-20
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
D V+ L ++ + ++ ++ G T L AA+KG I QLLL GA + R+
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL-RNIEK 173
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
A A + + A +N+ + +
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Score = 80.8 bits (200), Expect = 2e-17
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 29 HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD 88
V E PL AA +GN + LD+ VN + G +AL++A G D
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKD 120
Query: 89 VCACLLS-AGAKSYATNSVGRTASQMAAF 116
+ L + + N +G TA AA+
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAW 149
Score = 66.1 bits (162), Expect = 1e-12
Identities = 18/101 (17%), Positives = 25/101 (24%), Gaps = 7/101 (6%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ +L E + + T KG L V + E
Sbjct: 22 TFEPRTPDELYIEEG-DIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVA-EQAESID 74
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH AA G L + G TA A
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Score = 62.3 bits (152), Expect = 3e-11
Identities = 9/80 (11%), Positives = 16/80 (20%), Gaps = 6/80 (7%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+ G + A Y + L D+ + + G+ L
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKGRTG-----LIP 62
Query: 97 GAKSYATNSVGRTASQMAAF 116
AA
Sbjct: 63 SNYVAEQAESIDNPLHEAAK 82
Score = 35.7 bits (83), Expect = 0.025
Identities = 4/46 (8%), Positives = 9/46 (19%)
Query: 70 RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ G + A + + L + T
Sbjct: 8 PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT 53
Score = 30.3 bits (69), Expect = 1.2
Identities = 2/37 (5%), Positives = 9/37 (24%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG 51
+ ++ K L + + + +
Sbjct: 181 TNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 89.4 bits (223), Expect = 1e-20
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG--RHE 72
+N+ VQ+LL + D+ G PL + +I LL +VN +
Sbjct: 11 MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD 70
Query: 73 HGYSALHFAALSGKDDVCACLLS--AGAKSYATNSVGRTASQMAAF 116
G++ H A G +V L + G T +A
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Score = 82.5 bits (205), Expect = 4e-18
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLY--DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
S +++ V+ L L+ DL G+T L A K ++ Q L+++GA V + +
Sbjct: 81 SVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDK 138
Query: 73 HGYSALHFAALSGKDDVCACLLSAG-AKSYATNSVGRTASQMAAF 116
LH AA G + L G + + G T A
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Score = 72.5 bits (179), Expect = 1e-14
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 40 GMTPLQHAAYKGNKQ-ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
PL A + + +LL + + + + G LH++ ++ + LLS
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 99 ----KSYATNSVGRTASQMAAF 116
Y +S G T +A
Sbjct: 61 NVNLDDYPDDS-GWTPFHIACS 81
Score = 64.8 bits (159), Expect = 4e-12
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD-HGADVNSGRHEH 73
S + ++ L K V+ D+ G TPL HA +G+ LL++ +GA+ +
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL-VDNK 207
Query: 74 GYSALHFAALSGKDDVCACLLS 95
G A A + V L+
Sbjct: 208 GAKAEDVAL---NEQVKKFFLN 226
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 88.7 bits (221), Expect = 2e-20
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ D V+++L + +VD D G TPL A + + +I + L+D GAD+N ++
Sbjct: 14 NQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSIS 72
Query: 75 YSALHFAALSGKDDVCACLLSAGAKS-YATNSVGRTASQMAAF 116
S +A G+ ++ A +L N G A AA
Sbjct: 73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115
Score = 82.1 bits (204), Expect = 3e-18
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
L+ A + K++ ++L D V+ G + L+ A + ++ L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 97 GAKSYATNSVGRTASQMAAF 116
GA NS+ + A
Sbjct: 62 GADINLQNSISDSPYLYAGA 81
Score = 77.9 bits (193), Expect = 8e-17
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG-ADVNSGRHEH 73
++ + + +L ++ ++ +G L AA KG+ +LLL+ G D++ +++
Sbjct: 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-QNDF 139
Query: 74 GYSALHFAALSGKD-----DVCACLLSAGAKSYATNSVGRTASQMAAF 116
GY+AL A + D+ L+ GA ++ GRTA A
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187
Score = 67.5 bits (166), Expect = 4e-13
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAA-----YKGNKQICQLLLDHGADVNSG 69
K IDNV+ LL + + +D ++ G T L A + + I +LL+++GAD +
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI- 173
Query: 70 RHEHGYSALHFAALSGKDDVCACLLS 95
+ G +A+ +A G ++ L
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 46.3 bits (111), Expect = 6e-06
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
KLL E+ + D G T + +A KG +I ++L +
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 89.2 bits (221), Expect = 2e-20
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+D +++ + K D+ T L A G+ +I + LL G VN + + G
Sbjct: 15 YSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAG 73
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+S LH AA +G D++ LL GA A N G T AA
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Score = 76.8 bits (189), Expect = 3e-16
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
+ A ++ + +L + + +ALH+A +G ++ LL G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 100 SYATNSVGRTASQMAAF 116
+ G + +AA
Sbjct: 66 VNDKDDAGWSPLHIAAS 82
Score = 72.2 bits (177), Expect = 1e-14
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S + V+ LL + V+ D+ G +PL AA G +I + LL GA VN+ +++G
Sbjct: 49 SAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNG 106
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH+AA + ++ LL GA A + TA AA
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Score = 71.1 bits (174), Expect = 4e-14
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
G + + + + +L E D D + T + AA KGN ++ +LL + A
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164
Query: 66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
N + G + LH A + + L++ GA Y N +T Q+A
Sbjct: 165 TNI-QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 70.3 bits (172), Expect = 7e-14
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ D + K L V+ +++G TPL +AA K +I +LL+ GA+ ++ + +
Sbjct: 81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYD 139
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+A+H AA G + LL A + ++ G T +A
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
Score = 47.6 bits (113), Expect = 3e-06
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
EGN + K L + + ++ TPLQ A G + L G +
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEE 228
Query: 66 VN 67
+
Sbjct: 229 AS 230
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 90.3 bits (225), Expect = 2e-20
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 13 FISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
I+ ++ LS D HG + +A N ++ LL+ GA N
Sbjct: 6 RINTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---L 60
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
LH AA + LL +G + G TA A
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104
Score = 82.6 bits (205), Expect = 9e-18
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ D V+ LL L +D+ G T L +A GN Q +L + +
Sbjct: 71 TLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW 129
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ + A + + + LS ++ + +
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIK 170
Score = 78.7 bits (195), Expect = 2e-16
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHG-MTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ V+ + R+ Y + G T HA + I L
Sbjct: 105 SGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AIL 161
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
S +H +G D+ LL + NS+ A
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA 202
Score = 72.9 bits (180), Expect = 2e-14
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
ND+ V LSE ++ + G+ + LLLD+ N+ +
Sbjct: 138 MLNDVSIVSYFLSEI--PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLL 194
Query: 75 YS-ALHFAALSGKDDVCACLLSAGA 98
+ + A + ++ L
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYDI 219
Score = 71.4 bits (176), Expect = 5e-14
Identities = 10/96 (10%), Positives = 28/96 (29%), Gaps = 10/96 (10%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQH-AAYKGNKQICQLLLDHGADVNSGRHEHG 74
+D + LL + + + P A + ++ Q L + ++
Sbjct: 171 NGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY------- 222
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
SA L ++ ++ + + +
Sbjct: 223 -SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLD 257
Score = 45.6 bits (109), Expect = 2e-05
Identities = 2/41 (4%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
+ + +I +++++ + S +
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKS-DSYTKDLDIVKNN 262
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 87.1 bits (217), Expect = 2e-20
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ + ++LL DL D G + AA G Q LL+ ADVN G
Sbjct: 46 KLGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEG 103
Query: 75 YSALHFAALSGKDDVCACLLSAGAKS-YATNSVGRTASQMAAF 116
LH AA G V L+ A + N G TA +A
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146
Score = 83.6 bits (208), Expect = 4e-19
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ D++ + LL + + V+ + G T L GN +I + LL GA+ + + G
Sbjct: 14 ARGDLEQLTSLLQ-NNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDL-KDRTG 70
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ +H AA +G D LL A ++ G +AA
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Score = 75.5 bits (187), Expect = 2e-16
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHG 74
+D +Q LL + V++ D G PL AA +G+ ++ + L+ H A +V R+ G
Sbjct: 80 AGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKG 137
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
+A A L G+++V + + + GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161
Score = 75.1 bits (186), Expect = 4e-16
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
E L AA +G+ + LL + +VN+ ++ G +AL L G ++ LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLR 59
Query: 97 GAKSYATNSVGRTASQMAAF 116
GA + G AA
Sbjct: 60 GANPDLKDRTGFAVIHDAAR 79
Score = 47.0 bits (113), Expect = 2e-06
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA 64
+ + V+ L+ V + G T A G ++ L+ +GA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 86.8 bits (216), Expect = 2e-20
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ ++ V+ LL + + +G P+Q G+ ++ +LLL HGA+ N
Sbjct: 21 ARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATL 78
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+H AA G D L AGA+ ++ GR +A
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119
Score = 77.9 bits (193), Expect = 4e-17
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 24 KLLSEHKLRVDLYDEHGMT-PLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
+LL H + D +T P+ AA +G +L GA ++ R G + A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAE 119
Query: 83 LSGKDDVCACLLSAGAKSYATNSVGRTASQ 112
G DV L +A + +N A++
Sbjct: 120 ELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 76.4 bits (189), Expect = 1e-16
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
E L AA +G + + LL+ GA+ N+ + +G + + G V LL
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMMM-GSARVAELLLLH 66
Query: 97 GAKSYATNSVGRTA 110
GA+ + T
Sbjct: 67 GAEPNCADPATLTR 80
Score = 67.1 bits (165), Expect = 2e-13
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+L R+D+ D G P+ A G++ + + L G + A
Sbjct: 95 VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR------GSNHARIDAA 148
Query: 84 SGKDDV 89
G D+
Sbjct: 149 EGPSDI 154
Score = 52.5 bits (127), Expect = 2e-08
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 60 LDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ A + E L AA G+ + LL AGA A NS GR Q+
Sbjct: 1 MEPAAGSS---MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM 54
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 88.4 bits (220), Expect = 4e-20
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 16 KNDIDNVQKLLS-----EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR 70
+ + +V L + + +G T L A+ G I +LL+ GADVN+
Sbjct: 88 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147
Query: 71 HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+G +ALH A D+ + LL GA G + Q+
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192
Score = 87.6 bits (218), Expect = 8e-20
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
K V + + ++ + TPL A +I + LL G D R G
Sbjct: 20 EKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRG 78
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSY------ATNSVGRTASQMAAF 116
+ LH A G L + + ATN G T +A+
Sbjct: 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Score = 80.7 bits (200), Expect = 2e-17
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+G T L A N + LLL GADVN GYS + L
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Query: 97 GAKSYATNSVGRTASQMAA 115
++
Sbjct: 207 TLENLQMLPESEDEESYDT 225
Score = 75.7 bits (187), Expect = 1e-15
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 37 DEHGMTPLQHAAYKGNK----QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
E G + L A K ++ + + A +N ++ + LH A ++ + ++
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEA 63
Query: 93 LLSAGAKSYATNSVGRTASQMAA 115
LL AG + G T +A
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLAC 86
Score = 60.3 bits (147), Expect = 2e-10
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ D V LL V+ G +P Q + + +I Q L +
Sbjct: 161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-MLPESE 218
Query: 76 SALHFAALSGKDDV 89
+ S +
Sbjct: 219 DEESYDTESEFTEF 232
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 85.6 bits (213), Expect = 4e-20
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ ++ V++LL + + G P+ G+ Q+ +LLL HGA+ N
Sbjct: 21 ARGQVETVRQLLE-AGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCADPATL 78
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+H AA G D L AGA+ ++ GR +A
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
Score = 78.6 bits (195), Expect = 1e-17
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
+ + L AA +G + + LL+ GAD N+ + G + G V
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMM-MGSAQVAEL 62
Query: 93 LLSAGAKSYATNSVGRTA 110
LL GA+ + T
Sbjct: 63 LLLHGAEPNCADPATLTR 80
Score = 75.9 bits (188), Expect = 1e-16
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMT-PLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
+ LL H + D +T P+ AA +G +L GA ++
Sbjct: 53 MMGSAQVAELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-CDAW 110
Query: 74 GYSALHFAALSGKDDVCACLLSAGA 98
G + A G D+ L +A
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAATG 135
Score = 52.4 bits (127), Expect = 2e-08
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
+L R+D+ D G P+ A +G++ I + L D
Sbjct: 95 VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 51.7 bits (125), Expect = 3e-08
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ + L AA G+ + LL AGA A N GR Q+
Sbjct: 2 SPGIHM-LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 86.3 bits (215), Expect = 5e-20
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
D V+ L++ + V+ D G TPL AA+ G+ +I ++LL +GADVN+ G
Sbjct: 23 RAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAG 80
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ L AAL G ++ LL GA A + G T +AA
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Score = 85.9 bits (214), Expect = 8e-20
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ V+ LL + V+ D GMTPL+ AA G+ +I ++LL +GADVN+ G
Sbjct: 56 FNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEG 113
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
++ LH AA+ G ++ LL GA A + G+TA ++
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Score = 80.9 bits (201), Expect = 5e-18
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
L AA G ++L+ +GADVN+ G++ LH AA +G ++ LL GA
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 100 SYATNSVGRTASQMAAF 116
A + G T ++AA
Sbjct: 73 VNAVDHAGMTPLRLAAL 89
Score = 73.6 bits (182), Expect = 1e-15
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
++ V+ LL + V+ D G TPL AA G+ +I ++LL +GADVN+ + + G
Sbjct: 90 FGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGK 147
Query: 76 SALHFAALSGKDDVCACLLS 95
+A + +G +D+ L
Sbjct: 148 TAFDISIDNGNEDLAEILQK 167
Score = 45.0 bits (108), Expect = 9e-06
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 62 HGADVNSGRHEHG---YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G+ + H HG L AA +G+DD L++ GA A ++ G T +AAF
Sbjct: 2 RGSHHH---HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56
Score = 40.0 bits (95), Expect = 4e-04
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
++L ++ V+ D+ G T + GN+ + ++L
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 84.7 bits (211), Expect = 5e-20
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
+ G TPL +AA G+ + + LL GADVN+ R + G + LH AA +G ++ L
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 94 LSAGAKSYATNSVGRTASQMAAF 116
L+ GA A + G T +A
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKK 84
Score = 83.2 bits (207), Expect = 1e-19
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ V+KLLS V+ + G TPL AA G+ +I +LLL GADVN+ R + G
Sbjct: 18 KNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDG 75
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
+ H A +G ++ L + GA A +
Sbjct: 76 NTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 85.1 bits (212), Expect = 8e-20
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ LL + D + TPL AA +G+ I ++LL HGADVN+ +
Sbjct: 44 YGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKM 101
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ALH+A +V L+ GA + + +TA ++
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI 141
Score = 82.4 bits (205), Expect = 7e-19
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
D G +PL AA G+ ++LL G ++ R + + LH AA G ++ LL
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 97 GAKSYATNSVGRTASQMAAF 116
GA A + + TA A
Sbjct: 90 GADVNAKDMLKMTALHWATE 109
Score = 79.7 bits (198), Expect = 6e-18
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
L AA G ++L+ +GA + G S LH AA G LL AG
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 100 SYATNSVGRTASQMAAF 116
A V RT MAA
Sbjct: 60 RDARTKVDRTPLHMAAS 76
Score = 69.3 bits (171), Expect = 3e-14
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S+ + V+ LL H V+ D MT L A ++++ +LL+ +GADV++ + +
Sbjct: 76 SEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFC 133
Query: 75 YSALHFAALSGKDDVCACL 93
+A + +G +D+ L
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 87.3 bits (217), Expect = 9e-20
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+++ VQ+ + +E G+T L +A N I L+ GA+VNS HG
Sbjct: 30 LTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS-PDSHG 87
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATN-SVGRTASQMAA 115
++ LH AA +C L+ GA +AT S G TA +
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129
Score = 80.8 bits (200), Expect = 2e-17
Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
L V+ D HG TPL AA + IC L+ HGA + + G +A
Sbjct: 71 DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP 130
Query: 84 S--GKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
G D L NS A +
Sbjct: 131 YREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164
Score = 73.8 bits (182), Expect = 3e-15
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 22 VQKLLSE--HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
++ +L + + + + L AA G ++ Q + D + +E G +ALH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALH 59
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
A + L++AGA + +S G T AA
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96
Score = 57.3 bits (139), Expect = 1e-09
Identities = 17/106 (16%), Positives = 25/106 (23%), Gaps = 8/106 (7%)
Query: 15 SKNDIDNVQKLLSE--HKLRVDLYDEHGMTPLQHAA--YKGNKQICQLLLDHGADVNSGR 70
S ND L+ L D G T + +G L D +
Sbjct: 96 SCNDTVICMALVQHGAAIFATTLSD--GATAFEKCDPYREGYADCATYLADVEQSMGLMN 153
Query: 71 HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
AL + + D + + T AA
Sbjct: 154 -SGAVYALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAAL 197
Score = 48.4 bits (116), Expect = 2e-06
Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ + L++ + + L + + L + V R
Sbjct: 131 YREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESVTVLR-RDGPE 188
Query: 75 YSALHFAALSGKDDV 89
+ +AAL G++
Sbjct: 189 ETDWWWAALHGQEGY 203
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 84.0 bits (209), Expect = 2e-19
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
D V+ L++ + V+ DE+G+TPL A G+ +I ++LL +GADVN+ G
Sbjct: 23 RAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIG 80
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
++ LH AA G ++ LL GA A + G+TA ++
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 75.5 bits (187), Expect = 1e-16
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
L AA G ++L+ +GADVN+ + E+G + L+ A G ++ LL GA
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 100 SYATNSVGRTASQMAAF 116
A +++G T +AAF
Sbjct: 73 VNAVDAIGFTPLHLAAF 89
Score = 72.8 bits (180), Expect = 1e-15
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ ++ V+ LL + V+ D G TPL AA+ G+ +I ++LL HGADVN+ + + G
Sbjct: 56 AHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFG 113
Query: 75 YSALHFAALSGKDDVCACLLS 95
+A + +G +D+ L
Sbjct: 114 KTAFDISIGNGNEDLAEILQK 134
Score = 39.7 bits (94), Expect = 4e-04
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
++L +H V+ D+ G T + GN+ + ++L
Sbjct: 97 EVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 87.1 bits (217), Expect = 2e-19
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
S + Q L+ +D G TPL AA + + + L++ ADVN+ + G
Sbjct: 99 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLG 157
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
SALH+AA D LL GA N+ T +AA
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Score = 86.4 bits (215), Expect = 3e-19
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++ ++ + + L V+ D+ G + L AA N +LL +GA+ + ++
Sbjct: 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNRE 190
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ L AA G + LL A T+ + R +A
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
Score = 82.9 bits (206), Expect = 5e-18
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHG 74
+ D ++LL ++ D G TPL A + + Q+L+ + A D+++ R G
Sbjct: 67 YSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDG 124
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ L AA + + L+++ A A + +G++A AA
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166
Score = 74.0 bits (183), Expect = 4e-15
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
N++D LL + D+ + TPL AA +G+ + ++LLDH A+ +
Sbjct: 167 VNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDR 224
Query: 76 SALHFAALSGKDDVCACLLSAGA 98
A D+ L
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHH 247
Score = 74.0 bits (183), Expect = 5e-15
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 37 DEHGMTPLQHAAYKG-------------NKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
G TPL A+ G + + GA +++ G +ALH AA
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ D LL A A + +++GRT A
Sbjct: 67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Score = 49.8 bits (120), Expect = 6e-07
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
K+L +H D+ D P A + + I +LL +
Sbjct: 207 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 36.3 bits (85), Expect = 0.016
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 65 DVNSGRHEHGYSALHFAALSGKD-------------DVCACLLSAGAK-SYATNSVGRTA 110
DVN R G++ L A+ SG V + + GA T+ G TA
Sbjct: 2 DVNV-RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 111 SQMAAF 116
+AA
Sbjct: 61 LHLAAR 66
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 86.3 bits (215), Expect = 2e-19
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
++ L++ V+ D+ G + L AA N +LL +GA+ + ++
Sbjct: 102 LAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREE 159
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ L AA G + LL A T+ + R +A
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 199
Score = 83.2 bits (207), Expect = 2e-18
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHG 74
+ D ++LL ++ D G TPL A + + Q+L+ + A D+++ R G
Sbjct: 35 YSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDG 92
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ L AA + + L+++ A A + +G++A AA
Sbjct: 93 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 134
Score = 78.6 bits (195), Expect = 7e-17
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 13 FISKN-DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
FI + + N D G T L AA + LL+ AD N +
Sbjct: 10 FIYQGASLHNQT-------------DRTGETALHLAARYSRSDAAKRLLEASADANI-QD 55
Query: 72 EHGYSALHFAALSGKDDVCACLLSAGAKSY-ATNSVGRTASQMAAF 116
G + LH A + V L+ A A G T +AA
Sbjct: 56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Score = 77.5 bits (192), Expect = 2e-16
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
N++D LL + D+ + TPL AA +G+ + ++LLDH A+ +
Sbjct: 135 VNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDR 192
Query: 76 SALHFAALSGKDDVCACLLSAGA 98
A D+ L
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNL 215
Score = 65.1 bits (160), Expect = 3e-12
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 51 GNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
+ + GA +++ G +ALH AA + D LL A A + +++GRT
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 111 SQMAAF 116
A
Sbjct: 62 LHAAVS 67
Score = 52.0 bits (126), Expect = 8e-08
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
K+L +H D+ D P A + + I +LL ++ + H
Sbjct: 175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 83.2 bits (207), Expect = 2e-19
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++N V KLL E V+ D++G TPL AA G+ ++ +LLL+ GADVN+ + ++G
Sbjct: 10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNG 68
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ LH AA +G +V LL AGA A + GRT +AA
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 81.2 bits (202), Expect = 9e-19
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+G TPL AA G+ ++ +LLL+ GADVN+ + ++G + LH AA +G +V LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 99 KSYATNSVGRTASQMAAF 116
A + GRT +AA
Sbjct: 60 DVNAKDKNGRTPLHLAAR 77
Score = 78.2 bits (194), Expect = 1e-17
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
KLL E V+ D++G TPL AA G+ ++ +LLL+ GADVN+ + ++G + LH AA
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAAR 110
Query: 84 SGKDDVCACLLSAGA 98
+G +V LL AGA
Sbjct: 111 NGHLEVVKLLLEAGA 125
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 84.7 bits (211), Expect = 3e-19
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Query: 7 GNEIFDFISKNDIDNVQKLLSE--HKLRVDLY----DEHGMTPLQHAAYKGNKQICQLLL 60
G+ + + + V+K+ E +D D + TPL A G + L+
Sbjct: 1 GSHM-----DKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 61 DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
++ + + G +AL +A + + + LLS G+ + G+T +
Sbjct: 56 ENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110
Score = 83.2 bits (207), Expect = 9e-19
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
++N L E+ +++ D G T L A I + LL G++VN+ + G
Sbjct: 43 CMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSG 101
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
+ L ++ + G ++ LL GA N G T +A+
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143
Score = 82.8 bits (206), Expect = 2e-18
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
N + +KLLS V+ D G TPL + G ++ LL+HGA+VN R+ G
Sbjct: 77 KNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEG 134
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ L A+ G+ ++ LL GA A + G TA A
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
Score = 70.9 bits (175), Expect = 2e-14
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ LL H V+ + G TPL A+ G +I + LL+ GAD+++ R G
Sbjct: 111 FGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGL 168
Query: 76 SALHFAALSGKDDVCACLLSAGA 98
+A A + G+ +V
Sbjct: 169 TAEASARIFGRQEVIKIFTEVRR 191
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 87.1 bits (217), Expect = 3e-19
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
D+D VQ+LL V+ + E G TPL +A + I +LLL HGAD R ++
Sbjct: 14 QNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKN 71
Query: 74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G + AA++G + LS GA + G TA AA
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114
Score = 84.4 bits (210), Expect = 2e-18
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ D V+ LL H L ++G TP AA G+ ++ +L L GADVN +G
Sbjct: 48 QMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYG 105
Query: 75 YSALHFAALSGKDDVCACLLSAGAK----------SYATNSVGRTASQMAAF 116
++A AA+ GK L GA G TA AA
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Score = 84.1 bits (209), Expect = 3e-18
Identities = 23/77 (29%), Positives = 33/77 (42%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
L A + + Q LL+ GA+VN E G++ LH A ++D+ LL GA
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 100 SYATNSVGRTASQMAAF 116
G T +AA
Sbjct: 65 PVLRKKNGATPFLLAAI 81
Score = 82.9 bits (206), Expect = 9e-18
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN----KQICQLLLDHGADVNSGR 70
K ++ ++ LL E V+ D G L HA + + I LLLDHGADVN R
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-R 215
Query: 71 HEHGYSALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAA 115
E G + L A + LL + T+S G+TA +A
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
Score = 81.7 bits (203), Expect = 2e-17
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN------- 67
+ ++ LS V+ D +G T AA G + + L GA+VN
Sbjct: 81 IAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 68 --SGRHEHGYSALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAAF 116
+ G +AL AA G +V LL GA A +++GR A A
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191
Score = 79.8 bits (198), Expect = 8e-17
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEH 73
+D++ + LL +H V++ E G TPL A K + + Q LL+ ++N
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-TDSD 252
Query: 74 GYSALHFAALSGKDDVCACLLSAGAK 99
G +AL A + L GA
Sbjct: 253 GKTALLLAVELKLKKIAELLCKRGAS 278
Score = 77.9 bits (193), Expect = 3e-16
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 15 SKNDIDNVQKLLS---------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GA 64
+ ++ L + K + + G T L AA KG+ ++ ++LLD GA
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Query: 65 DVNSGRHEHGYSALHFAALSGKDDVCA----CLLSAGAKSYATNSVGRTASQMAAF 116
DVN+ G +AL A LS D LL GA G+T +A
Sbjct: 174 DVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228
Score = 61.7 bits (151), Expect = 9e-11
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
K + VQ+LL + + ++ D G T L A K+I +LL GA +
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 86.8 bits (216), Expect = 1e-18
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 1/101 (0%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
+ K D+ +Q + V + + AA +++ QLL + +V
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR-SLNT 322
Query: 74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
G V L+ A + +S ++
Sbjct: 323 GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 85.7 bits (213), Expect = 2e-18
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
+ KL D+ M + AA KG + L++ G ++ G +ALH A
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI-QNRFGCTALHLACK 62
Query: 84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
G D L S G + G+ +A
Sbjct: 63 FGCVDTAKYLASVGEVHSLWH--GQKPIHLAVM 93
Score = 83.4 bits (207), Expect = 1e-17
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD-----HGADVNSGR 70
++ ++ L+ D+ TPL A N++ L++D ++
Sbjct: 150 PEYLEMIKILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY-A 207
Query: 71 HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
++ G S LH+A L +DV + G ++ ++
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252
Score = 81.8 bits (203), Expect = 5e-17
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 16 KNDIDNVQKLLSE----HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
+ + + ++ LR+D ++ G + L A + + ++ G DVN
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM-ED 241
Query: 72 EHGYSALHFAALSGKDDVCACLLSAGA 98
L+ + + + LL
Sbjct: 242 NEHTVPLYLSVRAAMVLLTKELLQKTD 268
Score = 78.4 bits (194), Expect = 6e-16
Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 12/113 (10%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG----- 69
+ ++V E + V++ D PL + + + LL
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278
Query: 70 -------RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ AA K +V L + + + G +
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRK 331
Score = 73.0 bits (180), Expect = 4e-14
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 30 KLRVDLYDEHGMTPLQHAAYKGN--KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD 87
++ + G T L G ++ ++L+ GA + + + + L A
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KDKADETPLMRAMEFRNR 186
Query: 88 DVCACLLSAGAKSY-----ATNSVGRTASQMAAF 116
+ ++ N G + A
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220
Score = 71.4 bits (176), Expect = 1e-13
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN---------SGRHE-- 72
K L+ HG P+ A + L++ + E
Sbjct: 70 KYLASVG--EVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127
Query: 73 ---------HGYSALHFAALSGKD--DVCACLLSAGAKSYATNSVGRTASQMAAF 116
G +ALH+ G + ++ L+ GA A + T A
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAME 182
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 79.5 bits (197), Expect = 3e-18
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
L AA G ++L+ +GADV + + ++G + LH AA +G +V LL A
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 97 GAKSYATNSVGRTASQMAA 115
GA A + G+TA ++
Sbjct: 80 GADVXAQDKFGKTAFDISI 98
Score = 67.2 bits (165), Expect = 6e-14
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 47 AAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSV 106
+ + L+ G+ + L AA +G+DD L++ GA A +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 107 GRTASQMAAF 116
G T +AA
Sbjct: 57 GSTPLHLAAR 66
Score = 63.7 bits (156), Expect = 1e-12
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
++L + V D++G TPL AA G+ ++ +LLL+ GADV + + + G +A +
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISID 99
Query: 84 SGKDDVCACL 93
+G +D+ L
Sbjct: 100 NGNEDLAEIL 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 78.9 bits (196), Expect = 3e-18
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+G TPL AA G+ ++ +LLL+ GADVN+ + ++G + LH AA +G +V LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 99 KSYATNSVGRTASQMAAF 116
A + GRT +AA
Sbjct: 60 DVNAKDKNGRTPLHLAAR 77
Score = 77.8 bits (193), Expect = 7e-18
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
KLL E V+ D++G TPL AA G+ ++ +LLL+ GADVN+ + ++G + LH AA
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAAR 77
Query: 84 SGKDDVCACLLSAGA 98
+G +V LL AGA
Sbjct: 78 NGHLEVVKLLLEAGA 92
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 82.7 bits (205), Expect = 5e-18
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+ + D VQ+++ L ++ G+T L +A G+ +I + L+ G +VN+ G+
Sbjct: 47 EGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGW 104
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTASQMAAFVVVAVINNYI 126
+ LH AA VC L+ +GA +A T S +TA+ + Y
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE----EMEEGYT 152
Score = 81.5 bits (202), Expect = 1e-17
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH--E 72
+ K L + + V+ D G TPL AA N Q+C+ L++ GA V + +
Sbjct: 78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137
Query: 73 HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ G L K N A
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE 180
Score = 77.7 bits (192), Expect = 2e-16
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+ G L ++ + HG V + L ++L G+ D+ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYE 59
Query: 97 GAKSYATNSVGRTASQMAAF 116
N G TA A
Sbjct: 60 VDDPSLPNDEGITALHNAVC 79
Score = 40.3 bits (95), Expect = 7e-04
Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH- 73
+ + L + ++ + ++ + L + + +L + G + E
Sbjct: 147 MEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKEGDCMTIIHREDE 203
Query: 74 GYSALHFAALSGKD 87
+A L+ K+
Sbjct: 204 DEIEWWWARLNDKE 217
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 76.6 bits (188), Expect = 1e-17
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 413 TSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS 472
+S +G A + C C E A+K+C++C+ YC RECQ HW H K C +
Sbjct: 2 SSGSSGLEAVAPERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQG 60
Query: 473 AQPDDGKSA 481
+ G S+
Sbjct: 61 DRAKSGPSS 69
Score = 74.7 bits (183), Expect = 4e-17
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 313 TSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS 372
+S +G A + C C E A+K+C++C+ YC RECQ HW H K C +
Sbjct: 2 SSGSSGLEAVAPERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQG 60
Query: 373 AQPDDG 378
+ G
Sbjct: 61 DRAKSG 66
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 81.1 bits (201), Expect = 1e-17
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH---- 71
+ND+ + KLL V G T L AA N + +L++ ++
Sbjct: 13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL 72
Query: 72 EHGYSALHFAALSGKDDVCACLLSAGA-------------KSYATNSVGRTASQMAAF 116
G +ALH A ++ ++ LL+ GA + + G AA
Sbjct: 73 YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130
Score = 74.2 bits (183), Expect = 3e-15
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 23/125 (18%)
Query: 14 ISKNDIDNVQKLLS------------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD 61
+ +++ V+ LL+ R +G PL AA G+++I +LL++
Sbjct: 83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142
Query: 62 HGADVNSGRHEHGYSALHFAALSGKDDVCA----CLLSAGAK------SYATNSVGRTAS 111
HGAD+ + + G + LH L LLS N+ G T
Sbjct: 143 HGADIRA-QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201
Query: 112 QMAAF 116
++A
Sbjct: 202 KLAGV 206
Score = 68.4 bits (168), Expect = 3e-13
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 40 GMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
+PL AA + + + + +LL G +V+ R G +ALH AAL + L+ A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 99 KSY-----ATNSVGRTASQMAAF 116
+ + G+TA +A
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVI 84
Score = 67.6 bits (166), Expect = 5e-13
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNK----QICQLLLDHGADVNSGRH 71
+ V+ L+ H + D G T L + NK Q+ LLL + +
Sbjct: 131 VGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189
Query: 72 E-----HGYSALHFAALSGKDDVCACLLSAGA 98
E G + A + G + L+
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221
Score = 57.6 bits (140), Expect = 1e-09
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 15 SKNDIDNVQKLLSEH------KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
+K + LL + K + + G+TP + A +GN + Q L+ + +
Sbjct: 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225
Query: 69 GRHEHGY 75
H H +
Sbjct: 226 -AHHHHH 231
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 83.5 bits (207), Expect = 1e-17
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 15 SKNDIDNVQKLLS-------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADV 66
++ + + + L+ + R D G T L +AA N I + L+ G++
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306
Query: 67 NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ + E G + + AA G+ +V L+ GA A ++ TA Q+A
Sbjct: 307 DK-QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354
Score = 82.7 bits (205), Expect = 2e-17
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
+++ V+ L+ E D DE G TP+ AA +G ++ L+ GA V + +
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA-VDATDH 347
Query: 76 SALHFAALSGKDDVCACLLSAGAK 99
+A A + ++ +
Sbjct: 348 TARQLAQANNHHNIVDIFDRCRPE 371
Score = 78.8 bits (195), Expect = 5e-16
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 19 IDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSAL 78
I + K V+ D TPL A +++ L+ GAD ++ SAL
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSAL 203
Query: 79 HFAALSGKDDVCACLLS---AGAKSYATNSVGRTASQMAAF 116
H AA + + +L+ + G TA + A
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244
Score = 76.5 bits (189), Expect = 2e-15
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLY--DEHGMTPLQHAAYKGNK---QICQLLLDHGADVNSG 69
+ D + +L+ KL+ D+ D +GMT L A+ + +LL++ GA V+
Sbjct: 208 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267
Query: 70 RH-------EHGYSALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAAF 116
G +ALH+AA + L+ G+ + G+T +AA
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322
Score = 75.4 bits (186), Expect = 7e-15
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 11/110 (10%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
N D + + + L H G+ I + + ++ R H
Sbjct: 69 YGNGNDFLGDFNHTNLQIPTEPEPESPIKL-HTEAAGSYAITEPITRESVNIIDPR--HN 125
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSY--------ATNSVGRTASQMAAF 116
+ LH+ A + + L+ AK A + T +A
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL 175
Score = 75.0 bits (185), Expect = 9e-15
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLY-DEHGMTPLQHAAYKGNKQICQLLLDH--------GAD 65
+ + + E V++ H T L A + + + L+ H GAD
Sbjct: 102 AAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158
Query: 66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
VN+ + L A L+ + + A L+ AGA N R+A AA
Sbjct: 159 VNA-MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA 208
Score = 70.0 bits (172), Expect = 3e-13
Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 3/88 (3%)
Query: 29 HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD 88
K + + + + P GN + + LH A +G
Sbjct: 50 IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEA-AGSYA 107
Query: 89 VCACLLSAGAKSYATNSVGRTASQMAAF 116
+ + RT A
Sbjct: 108 ITEPITRESVNIIDPRH-NRTVLHWIAS 134
Score = 50.3 bits (121), Expect = 8e-07
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
+ I+ V L+ V+ D T Q A + I + +
Sbjct: 322 QEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372
Score = 45.3 bits (108), Expect = 3e-05
Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 10/76 (13%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
L A+Y G + + L H + +G D + +
Sbjct: 37 SQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDFNHTNLQI 86
Query: 100 SYATNSVGRTASQMAA 115
A
Sbjct: 87 PTEPEPESPIKLHTEA 102
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 76.3 bits (188), Expect = 2e-16
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNK------QICQLLLDHGADVNSGRHEHGYSA 77
L + + G T G ++C++ L+ GAD+ + ++
Sbjct: 59 MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIV 117
Query: 78 LHFAALSGKDDVCAC-------LLSAGAKSYATNSVGRTASQMAA 115
+ + D +G + + G TA +
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162
Score = 76.3 bits (188), Expect = 2e-16
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
Query: 15 SKNDIDNVQKLLSEH--KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
++ +L + L L++ + +I L++ GAD+ S R +
Sbjct: 15 MLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTK 73
Query: 73 HGYSALHFAALSGKDDV------CACLLSAGAKSYATNSVGRTASQMAAF 116
G + G +D+ C L GA A + F
Sbjct: 74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123
Score = 68.5 bits (168), Expect = 1e-13
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNK------QICQLLLDH-GADVNSGRHEHGYS 76
K+ E + + + + + +L+ G + + + G +
Sbjct: 98 KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLT 156
Query: 77 ALHFAALSGKDDVCACLLSAGAK 99
AL F K + K
Sbjct: 157 ALEFVKRCQKPIALKMMEDYIKK 179
Score = 65.1 bits (159), Expect = 2e-12
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVN--SGRHEHGYSALHFAALSGKDDVCACLLSAG 97
+ AA G + L + G + + Y L + + L++ G
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 98 AKSYATNSVGRTASQMAA 115
A + G T
Sbjct: 66 ADIKSRTKEGTTLFFPLF 83
Score = 58.9 bits (143), Expect = 3e-10
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 22 VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
+ + S+ L++ + D+ G+T L+ +++ D+ N
Sbjct: 136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 71.2 bits (174), Expect = 7e-16
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 374
D + C CG + A++ C+ C T RYC CQ W H C ++ + Q
Sbjct: 14 GDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 64
Score = 71.2 bits (174), Expect = 7e-16
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 423 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 474
D + C CG + A++ C+ C T RYC CQ W H C ++ + Q
Sbjct: 14 GDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 64
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 60
Score = 70.4 bits (172), Expect = 1e-15
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 314 SAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECAR 368
S +G D + C CG + A++ C+ C T RYC CQ W H C+
Sbjct: 3 SGSSGINQQEDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSG 56
Score = 70.4 bits (172), Expect = 1e-15
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 414 SAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECAR 468
S +G D + C CG + A++ C+ C T RYC CQ W H C+
Sbjct: 3 SGSSGINQQEDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSG 56
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 69.6 bits (170), Expect = 2e-15
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 374
+D + C CG + A++ C+ C T RYC CQ W H C ++ + Q
Sbjct: 10 SDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 60
Score = 69.6 bits (170), Expect = 2e-15
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 423 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 474
+D + C CG + A++ C+ C T RYC CQ W H C ++ + Q
Sbjct: 10 SDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 60
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 74.4 bits (183), Expect = 4e-15
Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 32/174 (18%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLY----------DEHGMTPLQHAAYKGNKQICQLLLDHG 63
+S D + LL + ++ G T L A + K +LL++ G
Sbjct: 57 LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116
Query: 64 ADVNS-------------GRHEHGYSALHFAALSGKDDVCACLLSAGAKS---YATNSVG 107
ADV++ G G L AA + + + L G K +S G
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG 176
Query: 108 RTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAE------PLH 155
T + N +++ ++ + + P + PL
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230
Score = 57.5 bits (139), Expect = 2e-09
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 17/102 (16%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLY--DEHGMTPLQHAAYKGNK---------QICQLLLDHG 63
N V L + DL D G T L + ++ LLL
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208
Query: 64 ADVNSGRH------EHGYSALHFAALSGKDDVCACLLSAGAK 99
A + + G S L AA +GK + ++
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250
Score = 56.7 bits (137), Expect = 4e-09
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 24/103 (23%)
Query: 35 LYDEHGMTPLQHAAYKGN----KQICQLLLDHGADVN---SGRHEHGYSALHFAAL---S 84
+++ L +G+ + + LL H + G + L A L +
Sbjct: 3 VFNR---PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA 59
Query: 85 GKDDVCACLLSAGAKSYATNSV-----------GRTASQMAAF 116
G++D LL K+ G+TA +A
Sbjct: 60 GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102
Score = 53.6 bits (129), Expect = 4e-08
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
+++D + E L + G++PL AA G I Q ++ +
Sbjct: 199 KMYDLLLIKCAKLFPDTNLE-----ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
Query: 69 GRHEHGY 75
H H +
Sbjct: 254 AHHHHHH 260
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Length = 52
Score = 68.3 bits (167), Expect = 5e-15
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSG 370
CV CG E A +C C YC CQR W H+ C +S
Sbjct: 6 ERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA 52
Score = 68.3 bits (167), Expect = 5e-15
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 423 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSG 470
CV CG E A +C C YC CQR W H+ C +S
Sbjct: 6 ERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA 52
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 75.8 bits (186), Expect = 6e-15
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 16 KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG-RHEHG 74
+ +D + LL+ ++ V + + AA G+ + L +
Sbjct: 105 SSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163
Query: 75 YSALHFAALSGKDDVCACLLSAGAKSYATN--SVGRTASQMAAF 116
Y A AA +G V L + A + AA
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207
Score = 55.7 bits (134), Expect = 2e-08
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 18/124 (14%)
Query: 10 IFDFISK-NDIDNVQKLLSEHKLRVDLYDEHGM-----------TPLQHAAYKGNK---Q 54
I F+ +++ V++LL + + + AA G
Sbjct: 50 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD 109
Query: 55 ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATN--SVGRTASQ 112
LLL V Y A AA +G V L + A +
Sbjct: 110 TLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 168
Query: 113 MAAF 116
+AA
Sbjct: 169 LAAE 172
Score = 48.0 bits (114), Expect = 4e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 19 IDNVQKLLSEHKLR----VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+D+++ LLS ++ L+ A GN+ C LLL + + + +
Sbjct: 294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK-ANN 352
Query: 75 YSALHFAALSGKDDVCACLLSAGA 98
Y + G+ D+ A L
Sbjct: 353 Y---YINETGGRLDLRAVALEHHH 373
Score = 42.6 bits (100), Expect = 2e-04
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 10/93 (10%)
Query: 22 VQKLLSEHKLRVDL-YDEHGMTPLQHAAY-KGNKQICQLLLDHGADVNSGRHEHGYSALH 79
+ +L + AA +G+ + LLD + A
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA--------YAEI 230
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQ 112
G+ V + + + + ++
Sbjct: 231 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 71.0 bits (174), Expect = 5e-14
Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 30/132 (22%)
Query: 14 ISKNDIDNVQKLLS------------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD 61
I K + V+ L+ + G PL AA + LL+
Sbjct: 98 IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157
Query: 62 HG---ADVNS---------------GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
+ A + + + SAL G + A L +
Sbjct: 158 NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS 217
Query: 104 NSVGRTASQMAA 115
N G T ++AA
Sbjct: 218 NHQGLTPLKLAA 229
Score = 67.9 bits (166), Expect = 6e-13
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 25/121 (20%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLY----------DEHGMTPLQHAAYKGNKQICQLLLDHGA 64
+ LL K + G + L A K + Q +LL+++GA
Sbjct: 55 QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Query: 65 DVN------------SGRHEHGYSALHFAALSGKDDVCACLLSAGAKS---YATNSVGRT 109
DV+ G L AA + + DV LL + AT+S+G T
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174
Query: 110 A 110
Sbjct: 175 V 175
Score = 67.9 bits (166), Expect = 7e-13
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 29 HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD 88
H L + + + L Y G Q+ L H+ G + L AA GK +
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ-GLTPLKLAAKEGKIE 235
Query: 89 VCACLLSAGAKSYATN 104
+ +L A +
Sbjct: 236 IFRHILQREFSGAAAH 251
Score = 59.8 bits (145), Expect = 4e-10
Identities = 21/111 (18%), Positives = 31/111 (27%), Gaps = 20/111 (18%)
Query: 8 NEIFDFISKNDIDNVQKLLSEHKLRVDLY-------DEHGMTPLQHAA---YKGNKQICQ 57
+ +F +S+ + + LL + G T L A G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 58 LLLDHGADVNSG----------RHEHGYSALHFAALSGKDDVCACLLSAGA 98
LL D + G+SALH A L+ GA
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Score = 56.3 bits (136), Expect = 5e-09
Identities = 12/61 (19%), Positives = 26/61 (42%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
+ + + L ++ + G+TPL+ AA +G +I + +L + H H
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Query: 75 Y 75
+
Sbjct: 256 H 256
Score = 37.8 bits (88), Expect = 0.006
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 12/78 (15%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDH--------GADVNSGRHEHGYSALHFAALSGKD---D 88
L +G + LL++ + G + L A L+ +D
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYT-EGSTGKTCLMKAVLNLQDGVNA 60
Query: 89 VCACLLSAGAKSYATNSV 106
LL S +
Sbjct: 61 CIMPLLQIDKDSGNPKPL 78
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 70.6 bits (173), Expect = 1e-13
Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 27/127 (21%)
Query: 16 KNDIDNVQKLLSEHKLRVDLY-----------DEHGMTPLQHAAYKGNKQICQLLLDHGA 64
N ++ LL + + D G T L A + N + LL+++GA
Sbjct: 66 HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125
Query: 65 DVN-------------SGRHEHGYSALHFAALSGKDDVCACLLSAGAKS---YATNSVGR 108
DV G L AA + + + LL + A +SVG
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185
Query: 109 TASQMAA 115
T
Sbjct: 186 TVLHALV 192
Score = 65.6 bits (160), Expect = 5e-12
Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 33/135 (24%)
Query: 14 ISKNDIDNVQKLLS-------------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
I + ++ V L+ K + G PL AA I + LL
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168
Query: 61 DHG---ADVNSGRHEHGYSALHFAALSGKDDV----------------CACLLSAGAKSY 101
+ AD+++ R G + LH + V A L
Sbjct: 169 QNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227
Query: 102 ATNSVGRTASQMAAF 116
TN G T +AA
Sbjct: 228 ITNRKGLTPLALAAS 242
Score = 57.5 bits (139), Expect = 2e-09
Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 24/117 (20%)
Query: 16 KNDIDNVQKLLSEHKLRVDL--YDEHGMTPLQHAAYKGNKQI---------CQLLLDHGA 64
N + V+ LL D+ D G T L + + +L GA
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217
Query: 65 DVNSGRH------EHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
++ G + L AA SGK V A +L AA
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAA 267
Score = 57.1 bits (138), Expect = 3e-09
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 21/101 (20%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLD-------HGADVNSGRHEHGYSALHFAALSGKD-- 87
+ + A + N Q + LL D E G + L A L+ +
Sbjct: 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69
Query: 88 -DVCACLLSAGAKSYAT-----------NSVGRTASQMAAF 116
D A LL K+ + G+TA +A
Sbjct: 70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110
Score = 56.3 bits (136), Expect = 5e-09
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
N+I + L ++ + G+TPL AA G + +L
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--------E 259
Query: 75 YSALHFAALSG 85
H AA
Sbjct: 260 PECRHAAAHHH 270
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 69.7 bits (170), Expect = 4e-13
Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 17 NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGY 75
+I + L+ + QH ++ +++ + ++N EHG
Sbjct: 73 PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGN 132
Query: 76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS 129
+ LH+ ++ L+ G+ +++G + A V NNY + +
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV----NNYDSGT 182
Score = 67.0 bits (163), Expect = 3e-12
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 15 SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
K+ I L ++ D +G T L AA GN I LLD+GAD ++ G
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI-ANKSG 316
Query: 75 YSALHFAA 82
+ F A
Sbjct: 317 LRPVDFGA 324
Score = 63.5 bits (154), Expect = 3e-11
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH----GADVNSG 69
+K +D + + + + R + + K LD +N+
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA- 278
Query: 70 RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
+ +G + L+ AA G + LL GA + N G A
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 65.0 bits (158), Expect = 9e-12
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 1 MSIPMEGNEIFDFISKNDIDNVQKLLSE-----HKLRVDLYDEHGMTPLQHAAYKGNK-- 53
E ++ I D+ +V + + L L A N+
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 54 -QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQ 112
+ ++ +G +++ + G +ALH+AAL + D LL A N G TA
Sbjct: 206 LPLVDFIIQNGGHLDA-KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264
Query: 113 MA 114
+A
Sbjct: 265 IA 266
Score = 50.8 bits (121), Expect = 5e-07
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 25 LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
+ ++ +D G T L +AA +LLL A V + +E G +AL A
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKK 269
Query: 85 GKDDVCACLL 94
+ C LL
Sbjct: 270 HHKE-CEELL 278
Score = 31.1 bits (70), Expect = 0.94
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLL 59
KLL + + V +E G T L A K +K+ +LL
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 63.5 bits (154), Expect = 3e-11
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 37 DEHGMTPLQHAAYKGNK---QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
E T L A ++ I L+ + +++ + G +ALH+ L+ + L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLTDNAECLKLL 224
Query: 94 LSAGAKSYATNSVGRTASQMAA 115
L A N G T +A
Sbjct: 225 LRGKASIEIANESGETPLDIAK 246
Score = 56.9 bits (137), Expect = 4e-09
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 25 LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
L ++ +D G T L + N + +LLL A + +E G + L A
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRL 248
Query: 85 GKDDVCACLL 94
+ C LL
Sbjct: 249 KHEH-CEELL 257
Score = 37.7 bits (87), Expect = 0.007
Identities = 14/79 (17%), Positives = 20/79 (25%), Gaps = 8/79 (10%)
Query: 45 QHAAYKGNKQICQLLLDHGADVN-----SGRHEHGYSALHFAALSGKDD---VCACLLSA 96
A + G D+ + HE +ALH A S + L+
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194
Query: 97 GAKSYATNSVGRTASQMAA 115
G TA
Sbjct: 195 SGNLDKQTGKGSTALHYCC 213
Score = 33.0 bits (75), Expect = 0.21
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
KLL K +++ +E G TPL A ++ +LL
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 63.4 bits (154), Expect = 9e-11
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)
Query: 3 IPMEGNEIFDFISKNDIDNVQKLLSE-----HKLRVDLYDEHGMTPLQHA---AYKGNKQ 54
E ++ I D+ +V + + L L A A + +
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188
Query: 55 ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
+ ++ +G +++ + G +ALH+AAL + D LL A N G TA +A
Sbjct: 189 LVDFIIQNGGHLDA-KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 62.5 bits (151), Expect = 9e-11
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
+ TPL A + C+ LL +GA+VN G LH A + G + L
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 97 GAKSYATNSVGRTASQMA 114
GA A +S GR +A
Sbjct: 291 GADLGARDSEGRDPLTIA 308
Score = 50.9 bits (121), Expect = 5e-07
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 25 LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
L ++ V+ D G PL HA G+ + L L GAD+ + R G L A +
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMET 311
Query: 85 GKDDVCACLLSAGAKSYAT----------NSVGRTASQMAA 115
D+ L A + + R S MA+
Sbjct: 312 ANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMAS 352
Score = 37.1 bits (85), Expect = 0.012
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGR-HEHGYSALHFAALSGKDDVCACLLSAGA 98
G + + + + L HGADVN + + L A + C LL GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 99 KSYATNSVGRTASQMAA 115
+S GR A
Sbjct: 260 NVNQADSAGRGPLHHAT 276
Score = 31.7 bits (71), Expect = 0.65
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD 61
L + + D G PL A N I LL
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 4e-10
Identities = 71/445 (15%), Positives = 135/445 (30%), Gaps = 141/445 (31%)
Query: 58 LLLDHGADVNSGRHEHGY---SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQ-- 112
L L HG+ EH +A F A ++ +L + +A + +
Sbjct: 9 LTLSHGS------LEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADD--EPTTPAE 59
Query: 113 -MAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTF---IMQVN-IHPVR 167
+ F+ Y++ S V+ + D +L L F ++ N IH
Sbjct: 60 LVGKFL------GYVS-SLVEP-------SKVGQFDQVLNLCLTEFENCYLEGNDIH--A 103
Query: 168 VALNLLPSLISHLPSVRKVV-------------------SLLSEKQMKAGPETNEII--- 205
+A LL + L ++++ S L G +++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA---VGEGNAQLVAIF 160
Query: 206 --QGD-KPC--DLVELFVRKIHRPIHGE------KYVAMFIRDCVREFPYREQGDKSCDL 254
QG+ +L +L+ + + + G+ + ++ IR + QG ++
Sbjct: 161 GGQGNTDDYFEELRDLY--QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG---LNI 215
Query: 255 VELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIF-KQMVS---SLARSDPTPGFALS 310
+E + P + Y+ P +I Q+ + TPG S
Sbjct: 216 LEWLENPSNTP--DKDYLL----SIPISCP----LIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 311 VLTSAINGHRG-------FADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHW-FIH 362
L A GH A+ + E+ K + F
Sbjct: 266 YLKGAT-GHSQGLVTAVAIAETDS------WESFFVSVRKA------------ITVLFFI 306
Query: 363 KKECARSGPSAQPDDGKLGNAVNGTAGEEKPM--VSSLARSD------------PTPGFA 408
C + P+ L +++ G PM +S+L + P G
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP-AGKQ 365
Query: 409 LSVLTSAINGHRGFADDTTPCVTCG 433
+ + S +NG + V G
Sbjct: 366 VEI--SLVNGAKNL-------VVSG 381
Score = 60.4 bits (146), Expect = 1e-09
Identities = 75/487 (15%), Positives = 130/487 (26%), Gaps = 228/487 (46%)
Query: 5 MEGNEIFDFISKNDIDNVQKLLSEHKL------------------------------RVD 34
+EGN+I +K +N L+ +L
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 35 LY-------------DEHGMTPLQ--HAAYKGNK--------QICQLLLDHGADVNSGRH 71
L +E L+ + Y + L+ D
Sbjct: 156 LVAIFGGQGNTDDYFEE-----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK-VF 209
Query: 72 EHGYSALHFAALSGKDDV------CACLLS------AGAKSYAT--NSVGRTASQMAAF- 116
G + L + L + + +S Y +G T ++ ++
Sbjct: 210 TQGLNILEW--LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 117 ---------VVVAVINNYIAKS--------------EVDYYIVPRGLETTPKLD------ 147
+V AV IA++ V ++I R E P
Sbjct: 268 KGATGHSQGLVTAVA---IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 148 ------------PILA------EPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKV-VS 188
P+L+ E + ++ + N SHLP+ ++V +S
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN---------------SHLPAGKQVEIS 369
Query: 189 LLSEKQMKAGPETNEIIQGDKPCDL--VELFVRKIHRPIHGEKYVAMFIRDCVREFPYRE 246
L++ G N ++ G P L + L +RK P ++ P+ E
Sbjct: 370 LVN------GA-KNLVVSGP-PQSLYGLNLTLRKAKAPSGLDQ----------SRIPFSE 411
Query: 247 QGDKSCDLVELFVRKI---HR--PI----HG---EKYVAMFIRDCVRE----------FP 284
RK+ +R P+ H + +D V+ P
Sbjct: 412 -------------RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 285 -Y--------REC----------MIFKQMV--SSLARSDPT------PGFA--LSVLTSA 315
Y R I + V + + T PG A L VLT
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 316 I-NGHRG 321
+G G
Sbjct: 519 NKDG-TG 524
Score = 51.6 bits (123), Expect = 6e-07
Identities = 49/401 (12%), Positives = 111/401 (27%), Gaps = 145/401 (36%)
Query: 161 VNIHPVRVALNLLPSLISHLPSVRKVVSL----------LSEKQMKAGPE-TNEIIQGDK 209
++ + R P +SH S+ V+ + L E+ K PE T D+
Sbjct: 1 MDAYSTR------PLTLSH-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 210 PCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRP---- 265
P EL + ++ ++ V + + ++ L + +
Sbjct: 54 PTTPAELVGK----------FLG-YVSSLVEP----SKVGQFDQVLNLCLTEFENCYLEG 98
Query: 266 --IHGEKYVAMFIRDC----------VREFPYRECMIFKQMVSSLARSDPTPGFALSVLT 313
IH A +++ ++ + ++ K+ + S AL
Sbjct: 99 NDIHA--LAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNS------AL--FR 147
Query: 314 SAINGH-RGFA-------------------DDTTPCVTCGEENATKKCAKC-----KTTR 348
+ G+ + A V + + + ++ +
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 349 YCDRECQRLHWFIHKKECARSGPSAQPDD------------------------------- 377
+ L W PS PD
Sbjct: 208 VFTQGLNILEWL--------ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 378 -GKLGNAVNGTAGEEKPMVSSL--ARSDPTPGF------ALSVLTS-AINGHRGFADDTT 427
G+L + + G G + +V+++ A +D F A++VL + + + + +
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 428 P------CVTCGEENAT-----KKCAKCKTTRYCDRECQRL 457
P + E + + + Y ++ L
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Score = 45.4 bits (107), Expect = 5e-05
Identities = 88/575 (15%), Positives = 153/575 (26%), Gaps = 194/575 (33%)
Query: 12 DFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR- 70
++ NDI H L L E+ T ++ K++ + + A + + R
Sbjct: 94 CYLEGNDI---------HALAAKLLQENDTTLVKT------KELIKNYIT--ARIMAKRP 136
Query: 71 -HEHGYSALHFAALSGKDDVCACL------------LSAGAKSYATNSVGRTASQMAAFV 117
+ SAL A G + A L ++Y VG A +
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETL 195
Query: 118 VVAVINNYIAKSEVD---YYIVPRGL---------ETTPKLD-----PILAEPL------ 154
+ + ++ +D + +GL TP D PI + PL
Sbjct: 196 ------SELIRTTLDAEKVF--TQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQL 246
Query: 155 -HTFIM--QVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPC 211
H + + P + + L H + V ++ A ++ E
Sbjct: 247 AHYVVTAKLLGFTPGELR-SYLKGATGHSQGL--VTAVAI-----AETDSWE-------- 290
Query: 212 DLVELFVRKIHRPIHGEKYVAMF---IRDCVREFPYREQGDKSCDLVELFVRKIHRPIHG 268
+ I +F +R C +P ++E + +
Sbjct: 291 SFFVSVRKAIT---------VLFFIGVR-CYEAYP---NTSLPPSILEDSLE------NN 331
Query: 269 EKYVA-MF-IRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDT 326
E + M I + +E + V+ P G + + S +NG +
Sbjct: 332 EGVPSPMLSISNLTQEQ-------VQDYVNKTNSHLP-AGKQVEI--SLVNGAKNL---- 377
Query: 327 TPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP--SAQPDDGKLGNAV 384
V G + L K A SG S P
Sbjct: 378 ---VVSG------------PPQSLYGLNLTLR-----KAKAPSGLDQSRIPFS------- 410
Query: 385 NGTAGEEKPMVSSLARSDP--TPGFALSVLTSAINGHRGFADDTT------------P-- 428
E K S+ R P +P F +L A D P
Sbjct: 411 -----ERKLKFSN--RFLPVASP-FHSHLLVPAS--DLINKDLVKNNVSFNAKDIQIPVY 460
Query: 429 CVTCGE------ENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQPDDGKSAQ 482
G + +++ C + W + + + D G
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIR-------LPVKW----ETTTQFKATHILDFGPGGA 509
Query: 483 SDNGKL-GNAVNGTAGEEKPVTKEDKREEKEDGVK 516
S G L +GT D + + G K
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 43.5 bits (102), Expect = 2e-04
Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 69/193 (35%)
Query: 38 EHGMTPLQHAAYKGNKQICQLLLDHGADVNS-GRHEHGYSALHFAALSGK---DDVCACL 93
G+ P A + G H S G E Y+AL A+L+ + + +
Sbjct: 1749 SKGLIP-ADATFAG----------H-----SLG--E--YAAL--ASLADVMSIESLVE-V 1785
Query: 94 LSA-GAKSYATNSVGRTASQMAAFVVVAVINNYIAKS---EVDYYIVPRGLETTPKLDPI 149
+ G +V R + + ++A+ +A S E Y+V R + T
Sbjct: 1786 VFYRG--MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW---- 1839
Query: 150 LAEPLHTFIMQVNIHPVRVALNLLPSL---IS-HLPSVRKVVSLLSEKQMKAGPETNEII 205
L E VN N + + + L ++ V ++L +K
Sbjct: 1840 LVEI-------VN-------YN-VENQQYVAAGDLRALDTVTNVL--NFIKL-------- 1874
Query: 206 QGDKPCDLVELFV 218
+ D++EL
Sbjct: 1875 ---QKIDIIELQK 1884
Score = 32.3 bits (73), Expect = 0.54
Identities = 51/323 (15%), Positives = 86/323 (26%), Gaps = 111/323 (34%)
Query: 235 IRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQM 294
I D V P L F + + I E Y AM V E IFK++
Sbjct: 1661 ILDIVINNPVN--------LTIHFGGEKGKRIR-ENYSAMIFETIVDGKLKTEK-IFKEI 1710
Query: 295 VSSLARSDPTPGFALSVLTSAINGHRGFADDT--T-PCVTCGEENATKKCAKCKTTRYCD 351
+ T +G T T P +T
Sbjct: 1711 -----------NEHSTSYT--FRSEKGLLSATQFTQPALT--------------LMEKAA 1743
Query: 352 RECQRLHWFIHKKECARSGPSAQPDDGKLG--NAVNGTAGEEKPMVSSLARSDPTPGFAL 409
E + + + +G S LG A+ A V S+ +
Sbjct: 1744 FEDLK-SKGLIPADATFAGHS-------LGEYAALASLAD-----VMSI--ES-----LV 1783
Query: 410 SVLTSAINGHRG-FADDTTPCVTCGEENATKKCAKCKTTR---YCDRECQRLHWFIHKKE 465
V+ +RG P G N R +E + ++ ++
Sbjct: 1784 EVVF-----YRGMTMQVAVPRDELGRSNY--GMIAINPGRVAASFSQEALQ---YVVERV 1833
Query: 466 CARSGPSAQPDDGKSAQSDNGKLGNAVN----GT----AGEEKPVTKEDKREEKEDGVKP 517
R+G + VN AG+ + + D + +K
Sbjct: 1834 GKRTGWLVEI----------------VNYNVENQQYVAAGDLRAL---DTVTNVLNFIK- 1873
Query: 518 ESKKI------EGSSIEKISEQI 534
+KI + S+E++ +
Sbjct: 1874 -LQKIDIIELQKSLSLEEVEGHL 1895
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 44.9 bits (105), Expect = 5e-05
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 329 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKECA 367
C TC + +C +CK YCDR CQ+ W HK ECA
Sbjct: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECA 91
Score = 44.9 bits (105), Expect = 5e-05
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 429 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKECA 467
C TC + +C +CK YCDR CQ+ W HK ECA
Sbjct: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECA 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 46/340 (13%), Positives = 90/340 (26%), Gaps = 113/340 (33%)
Query: 128 KSEVDYYIV---PRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVR 184
D V P+ + + ++D I+ V L L +L+
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSK----------DAVSGTLRLFWTLL------- 72
Query: 185 KVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHG---EKYVAMFIRDCVRE 241
K ++V+ FV ++ R + + +
Sbjct: 73 -----------------------SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 242 FPYREQGDKSCDLVELFV-RKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLAR 300
Y EQ D+ + ++F + R + Y+ +R + E + ++ +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRL---QPYLK--LRQALLELRPAKNVLIDGV------ 158
Query: 301 SDPTPGFALSVLT-SAINGHRGFADDTTPCVTCGEENATK--KCAKCKTTRYCDRECQRL 357
G + + ++ V C + C + Q+L
Sbjct: 159 ----LGSGKTWVALDVCLSYK---------VQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 358 HWFIHKKECARSGPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAIN 417
+ I +RS S+ + + L +S P L VL
Sbjct: 206 LYQIDPNWTSRSDHSSNIKL---------RIHSIQAELRRLLKSKPYEN-CLLVL----- 250
Query: 418 GHRGFADDTTPCVTCGEENATKKCAK-----CK---TTRY 449
+ V K CK TTR+
Sbjct: 251 ------LN----V------QNAKAWNAFNLSCKILLTTRF 274
Score = 29.1 bits (64), Expect = 4.5
Identities = 40/296 (13%), Positives = 79/296 (26%), Gaps = 102/296 (34%)
Query: 200 ETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDC--VREFPYREQGDKSCD---- 253
ET E K D++ +F + +V F DC V++ P + D
Sbjct: 10 ETGEHQYQYK--DILSVFE---------DAFVDNF--DCKDVQDMPKSILSKEEIDHIIM 56
Query: 254 ----------LVELFVRKIHRPIHGEKYVAMFIRDCVR-EFPYRECMIFKQMVSSLARSD 302
L + K E+ V F+ + +R + + ++S +
Sbjct: 57 SKDAVSGTLRLFWTLLSK------QEEMVQKFVEEVLRINYKF--------LMSPIKTEQ 102
Query: 303 PTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIH 362
P + + R + D + RL ++
Sbjct: 103 RQPSMMTRMYIEQRD--RLYND---------------------NQVFAKYNVSRLQPYLK 139
Query: 363 KKECARSGPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAINGHRGF 422
++ +P L ++G G K + +A L+ + F
Sbjct: 140 LRQALLE---LRPAKNVL---IDGVLGSGK---TWVA--------LDVCLSYKVQCKMDF 182
Query: 423 ADDTTPCV---TCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQP 475
+ C + Q+L + I +RS S+
Sbjct: 183 K------IFWLNLK---------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Score = 28.3 bits (62), Expect = 8.0
Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 56/169 (33%)
Query: 128 KSEVDYYIVPRGLETTPKLDPILAEPLHTFI-------------------------MQVN 162
+S VD+Y +P+ ++ + P L + ++ I ++
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 163 IHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIH 222
I A N S+++ L ++ + + P+ ++ +++ F+ K
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDND----PKYERLV-----NAILD-FLPK-- 554
Query: 223 RPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKY 271
E + + K DL+ + + I E +
Sbjct: 555 ---IEE--------NLIC--------SKYTDLLRIALMAEDEAIFEEAH 584
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 41.8 bits (97), Expect = 4e-04
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 329 CVTCGEENAT-KKCAKCKTTRYCDRECQRLHWFIHKKEC 366
C C KC +CK YCD ECQ+ W +HK EC
Sbjct: 52 CECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90
Score = 41.8 bits (97), Expect = 4e-04
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 429 CVTCGEENAT-KKCAKCKTTRYCDRECQRLHWFIHKKEC 466
C C KC +CK YCD ECQ+ W +HK EC
Sbjct: 52 CECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 35.2 bits (80), Expect = 0.051
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 337 ATKKCAKCKTTRYCDRECQRLHWFIHKKEC 366
+C++C+ +YC +CQ+ W HK+EC
Sbjct: 59 KLMRCSQCRVAKYCSAKCQKKAWPDHKREC 88
Score = 35.2 bits (80), Expect = 0.051
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 437 ATKKCAKCKTTRYCDRECQRLHWFIHKKEC 466
+C++C+ +YC +CQ+ W HK+EC
Sbjct: 59 KLMRCSQCRVAKYCSAKCQKKAWPDHKREC 88
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 30.4 bits (68), Expect = 0.16
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 315 AINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 366
+G G T CV C E+ +C C+ YC C R HK++C
Sbjct: 1 GSSGSSGLKCSTVVCVICLEK-PKYRCPACRV-PYCSVVCFR----KHKEQC 46
Score = 30.4 bits (68), Expect = 0.16
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 415 AINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 466
+G G T CV C E+ +C C+ YC C R HK++C
Sbjct: 1 GSSGSSGLKCSTVVCVICLEK-PKYRCPACRV-PYCSVVCFR----KHKEQC 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.34
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 408 ALSVLTSAINGHRGFADDTTPCVTCGEENAT 438
AL L +++ + +ADD+ P + AT
Sbjct: 21 ALKKLQASL---KLYADDSAPALAI---KAT 45
Score = 29.1 bits (64), Expect = 1.9
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 24/47 (51%)
Query: 292 KQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENAT 338
K++ +SL + +ADD+ P + AT
Sbjct: 23 KKLQASL---------------------KLYADDSAPALAI---KAT 45
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2;
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.85.1.2
Length = 59
Score = 29.3 bits (65), Expect = 0.48
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 329 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARS 369
C + A C +C YC C R H CA +
Sbjct: 17 CPAGEVQPARYTCPRCN-APYCSLRCYRTH-----GTCAEN 51
Score = 29.3 bits (65), Expect = 0.48
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 429 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARS 469
C + A C +C YC C R H CA +
Sbjct: 17 CPAGEVQPARYTCPRCN-APYCSLRCYRTH-----GTCAEN 51
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle
structural genomics center for infectious disease, S
coccidioides, valley fever; 2.35A {Coccidioides immitis}
Length = 318
Score = 31.9 bits (73), Expect = 0.48
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 23/97 (23%)
Query: 80 FAALSGKDDVCACLLSAGAK---SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV 136
F+ G+ D LS G+ + N +T S++ + ++
Sbjct: 196 FSVFGGQSDFLIGGLSVGSAGCIAAFANVFPKTVSKI----YELYKAGKVDQAM------ 245
Query: 137 PRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLL 173
+L A + + I + A +
Sbjct: 246 --------ELHRKAA-LAESPC-KSGIATTKYAAAIF 272
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium
tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A
{Agrobacterium tumefaciens str}
Length = 332
Score = 30.7 bits (70), Expect = 1.1
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 27/101 (26%)
Query: 79 HFAALSGKDDVCACLLSAGAK---SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI 135
FA D C AG S + A Q+ + A +++
Sbjct: 217 DFAIGYSGDWGCTDATLAGGDTWYSVVAGLLPVPALQL----MRAAQAGNAEEAK----- 267
Query: 136 VPRGLETTPKLDPILAEPLHTFIMQVNIHPVRV---ALNLL 173
+LD PL + +RV A N+L
Sbjct: 268 ---------RLDATFQ-PLWALFKEFG--SIRVIYAAANIL 296
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
g.43.1.1
Length = 67
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 324 DDTTPCVTCGEENATKKCAKCKTTRYCDR 352
C C E+AT +CA C YC R
Sbjct: 6 SGLPWCCIC-NEDATLRCAGCDGDLYCAR 33
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 424 DDTTPCVTCGEENATKKCAKCKTTRYCDR 452
C C E+AT +CA C YC R
Sbjct: 6 SGLPWCCIC-NEDATLRCAGCDGDLYCAR 33
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis,
pyruvate, TIM barrel, NYSGXRC, PSI2., structural
genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Length = 300
Score = 29.4 bits (67), Expect = 2.6
Identities = 11/97 (11%), Positives = 21/97 (21%), Gaps = 21/97 (21%)
Query: 80 FAALSGKDDVCACLLSAGAK---SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV 136
S + A ++ G + R Q A + + +
Sbjct: 184 LQVFSASAHIPAAVMLIGGVGWMAGPACIAPR---QSVALYELCKAQRWDEALMLQR--- 237
Query: 137 PRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLL 173
KL + F ++ L L
Sbjct: 238 --------KLWRV----NEAFAKFNLAACIKAGLALQ 262
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function;
2.00A {Candida albicans} PDB: 2x7p_A
Length = 321
Score = 29.3 bits (65), Expect = 3.5
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV 89
L+V EH TPL A +G H + + G L S + D+
Sbjct: 16 TLKVAYIPEHFSTPLFFAQQQG------YYKAHDLSIEFVKVPEGSGRLINLLNSNEVDI 69
Query: 90 CACLLSAGAKSYA 102
L A A
Sbjct: 70 AIGLTEAFIADIA 82
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid
biosynthesis, cytoplasm, diaminopimelate biosynthesis,
lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB:
3bi8_A* 3ird_A*
Length = 291
Score = 29.2 bits (66), Expect = 3.6
Identities = 12/113 (10%), Positives = 31/113 (27%), Gaps = 15/113 (13%)
Query: 61 DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVA 120
+ +++ SG DD +L+ G + + +
Sbjct: 162 EASGNISQIAQIKALCGDKLDIYSGNDDQIIPILALGGIGVISVLANVIPEDVHNMCELY 221
Query: 121 VINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLL 173
+ ++ + + ++ N PV+ A+NL+
Sbjct: 222 LNGKVNEALKIQLDSLAL---------------TNALFIETNPIPVKTAMNLM 259
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 28.6 bits (64), Expect = 5.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 330 VTCGEENATKKCAKCKTTRYCDRECQRLHWF 360
+ CG ++A K +C D Q L WF
Sbjct: 166 MMCGYQSAQKDN-QCTGYGNIDDIPQFLRWF 195
Score = 28.6 bits (64), Expect = 5.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 430 VTCGEENATKKCAKCKTTRYCDRECQRLHWF 460
+ CG ++A K +C D Q L WF
Sbjct: 166 MMCGYQSAQKDN-QCTGYGNIDDIPQFLRWF 195
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A
{Pseudomonas aeruginosa}
Length = 315
Score = 28.7 bits (65), Expect = 5.3
Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 23/99 (23%)
Query: 79 HFAALSGKDDVCACLLSAGAK---SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI 135
+G + + AGAK S A N + + + + Y
Sbjct: 204 RVPFYNGCNPLALEAFVAGAKGWCSAAPNLIPT---LNGQLYQAVLDGDLEKARALFYRQ 260
Query: 136 VPRGLETTPKLDPILAEPLHTFI-MQVNIHPVRVALNLL 173
+ PL FI + ++ L L
Sbjct: 261 L----------------PLLDFILRRGLPTTIKAGLGLS 283
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid
biosynthesis, (S)-lysine biosynthesis VIA DAP PAT
(beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB:
4dpq_A*
Length = 360
Score = 28.4 bits (64), Expect = 5.6
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 80 FAALSGKDDVCAC-LLSAGAK---SYATNSVGRTASQM 113
SG DD C GA S +N V ++
Sbjct: 233 VVVWSGNDDECHDSRWDYGATGVISVTSNLVPGLMRKL 270
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 28.5 bits (63), Expect = 6.2
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 6/121 (4%)
Query: 165 PVRVA-----LNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVR 219
PVR+A LP +I P++ V L K + I +L +
Sbjct: 69 PVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLT-DFPPIKDQADEAQYCQLVRQ 127
Query: 220 KIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDC 279
+ +A +R+ + + D I + D
Sbjct: 128 LLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDF 187
Query: 280 V 280
V
Sbjct: 188 V 188
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural
GEN midwest center for structural genomics, MCSG; HET:
P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Length = 113
Score = 27.0 bits (60), Expect = 6.5
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 8/77 (10%)
Query: 9 EIFDFISKNDIDNVQKLLS-EHKLRVDLYDEHGMTP--LQHAAYK-----GNKQICQLLL 60
+ F N ++ + L + H + +I Q L
Sbjct: 23 KYFGLTCSGTRGNAFAVMRDNDGFILTLMKGKEVQYPKTFHVGFPQESEEQVDKINQRLK 82
Query: 61 DHGADVNSGRHEHGYSA 77
+ G V +H H Y+
Sbjct: 83 EDGFLVEPPKHAHAYTF 99
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 28.3 bits (63), Expect = 6.7
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 330 VTCGEENATKKCAKCKTTRYCDRECQRLHWF 360
+ CG ++A K +C D Q L WF
Sbjct: 200 MMCGYQSAQKDN-QCTGYGNIDDIPQFLRWF 229
Score = 28.3 bits (63), Expect = 6.7
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 430 VTCGEENATKKCAKCKTTRYCDRECQRLHWF 460
+ CG ++A K +C D Q L WF
Sbjct: 200 MMCGYQSAQKDN-QCTGYGNIDDIPQFLRWF 229
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI-2, structural genomics; 1.90A
{Oceanobacillus iheyensis HTE831}
Length = 314
Score = 28.3 bits (64), Expect = 7.1
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 19/99 (19%)
Query: 79 HFAALSGKDD-VCACLLSAGAK---SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYY 134
+ A + G + AGA S N + + A + N +V
Sbjct: 188 NVAFICGTAEKWAPFFYHAGAVGFTSGLVNVFPQ---KSFALLEALEEGNQEKIWDVWED 244
Query: 135 IVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLL 173
+VP + N+ ++ A+ L
Sbjct: 245 VVP------------FEDLRAKHNNGNNVVIIKEAMEQL 271
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid
mimetics, aldolase, S base, carbohydrate metabolism,
N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A
{Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A*
2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A
3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A
3lcw_A
Length = 303
Score = 28.1 bits (63), Expect = 7.2
Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
Query: 80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRG 139
+G D++ A L AGA ++ + V + ++
Sbjct: 191 LVLYNGYDNIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVI 250
Query: 140 LETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQ 194
+ + ++ V++ R P +LP ++ + L +++
Sbjct: 251 DLLIKTGVFRGLKTVLHYMDVVSVPLCR--KPFGPVDEKYLPELKALAQQLMQER 303
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase;
HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2
c.95.1.2 PDB: 1qlv_A
Length = 402
Score = 27.9 bits (62), Expect = 8.3
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYD 37
++ ++KN + +K LS +
Sbjct: 271 QLHRDVPLMVAKNIENAAEKALSPLGITDWNSV 303
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine
biosynthesis;spine, lyase; 1.94A {Bacillus anthracis}
SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Length = 301
Score = 27.9 bits (63), Expect = 8.4
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 25/99 (25%)
Query: 80 FAALSGKDDVCACLLSAGAK---SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV 136
FA SG D + ++ GAK S A++ +G +M + A K++
Sbjct: 192 FAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEM----IAAFQAGEFKKAQ------ 241
Query: 137 PRGLETTPKLDPILAEPLHT--FIMQVNIHPVRVALNLL 173
KL +L + F+ + PV+ AL ++
Sbjct: 242 --------KLHQLLV-RVTDSLFM-APSPTPVKTALQMV 270
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel,
amino-acid biosynthesis, diaminopimelate biosynthesis;
2.00A {Neisseria meningitidis serogroup B}
Length = 297
Score = 27.9 bits (63), Expect = 9.0
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 25/100 (25%)
Query: 79 HFAALSGKDDVCACLLSAGAK---SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI 135
F LSG D + G + A N+ + A A+ +
Sbjct: 186 GFVVLSGDDHTALPFMLCGGHGVITVAANAAPK---LFADMCRAALQGDI---------- 232
Query: 136 VPRGLETTPKLDPILAEPLHT--FIMQVNIHPVRVALNLL 173
+L+ L P++ F + + + A++ L
Sbjct: 233 -----ALARELNDRLI-PIYDTMFC-EPSPAAPKWAVSAL 265
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 27.4 bits (61), Expect = 9.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 46 HAAYKGNKQICQLLLDHGADV 66
H Y+ + L+ GA+V
Sbjct: 16 HCTYEEVMPHLEKLIAEGAEV 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,975,206
Number of extensions: 478724
Number of successful extensions: 1802
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1401
Number of HSP's successfully gapped: 371
Length of query: 534
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 436
Effective length of database: 3,965,535
Effective search space: 1728973260
Effective search space used: 1728973260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)