BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy286
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2
Length = 146
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Query: 182 SSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRP 241
S + GN+YYEN YF RNRWV + V L+YD + VP EW+ WLH+ TD P P P
Sbjct: 46 SDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKP-PP 104
Query: 242 VYKWMAEHTQNMSG-SNKEYVPYSTTRDKIQAWTP 275
W+ EH +N S ++K+YVPYSTTR KIQ W P
Sbjct: 105 TQDWVLEHKENTSIYADKKYVPYSTTRTKIQGWQP 139
>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Bos taurus GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
GNKYYE+ + FFGR+RWVIY ++ + DGSMVP EW+ WLH TD P P
Sbjct: 45 GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPT 104
Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
H N+SG+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNLSGTPQQYVPYSTTRKKIQEWVPPST 142
>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
GNKYYE+ + FFGR+RWV+Y ++ + DGSMVP EW+ WLH TD P P
Sbjct: 45 GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLT 104
Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
H NM+G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNMTGTPEQYVPYSTTRKKIQEWIPPST 142
>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
GNKYYE+ + FFGR+RWV+Y ++ + DGSMVP EW+ WLH TD P P
Sbjct: 45 GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLT 104
Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
H N++G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPST 142
>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Homo sapiens GN=NDUFA12 PE=1 SV=1
Length = 145
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
GNKYYE+ + FFGR+RWV+Y ++ + DGSMVP EW+ WLH TD P P
Sbjct: 45 GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLT 104
Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
H N++G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPST 142
>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1
Length = 145
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
GNKYYE+ + FFGR+RWV+Y ++ + DGSMVP EW+ WLH TD P P
Sbjct: 45 GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLT 104
Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
H N++G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPST 142
>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Mus musculus GN=Ndufa12 PE=1 SV=2
Length = 145
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
GNKYYE+ + FFGR+RWVIY ++ + DGSMVP EW+ WLH TD P +P
Sbjct: 45 GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPT 104
Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
H N+S + ++YVPYSTTR KI W PPS+
Sbjct: 105 ARKFIWTNHKFNVSATPEQYVPYSTTRKKIHEWVPPST 142
>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1
Length = 159
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 186 GNKYYEN-PRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYK 244
GNKYY+ +GR+RWV Y Y+ S VPAEW+GWLH+ TD+T E +
Sbjct: 58 GNKYYQKLGDTQYGRHRWVEYASKD--RYNASQVPAEWHGWLHFITDHTGDELLSLKPKR 115
Query: 245 WMAEHTQNMSGSNKEYVPYSTTR---------DKIQAWTPPSS 278
+ EH +N SG Y+ +S + Q+W P +
Sbjct: 116 YGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158
>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2
Length = 138
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCED-PGRPVYK 244
GN+YYEN + +GR+RWV Y D N D + +P E++ W+H+ +D P E P P YK
Sbjct: 41 GNRYYENRQEIYGRHRWVEYG-DYKSN-DPTTIPPEYHSWIHHVSDKLPSEMLPFSPTYK 98
Query: 245 WMAEHTQNMSGSNKEYVP 262
H N +G++ Y P
Sbjct: 99 --RPHIANPTGTDGAYTP 114
>sp|O74761|PRI2_SCHPO DNA primase large subunit OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pri2 PE=1 SV=1
Length = 459
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 197 FGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGS 256
FGR ++ ++ D+GL+ D ++V W T+ T ED Y++ HT + G+
Sbjct: 308 FGRLQYGLFLKDIGLSVDEALV-----FWRKSFTNVT--EDKFNKEYRYNIRHTYGLEGN 360
Query: 257 NKEYVPYS 264
K Y Y+
Sbjct: 361 RKNYKGYN 368
>sp|Q96JM4|LRIQ1_HUMAN Leucine-rich repeat and IQ domain-containing protein 1 OS=Homo
sapiens GN=LRRIQ1 PE=2 SV=3
Length = 1722
Score = 31.6 bits (70), Expect = 7.3, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 229 KTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPY-STTRDKIQAWTPPSSSGRNKF 284
K D T P P W+ +N+S S E+ + S + +K +WTP S + R
Sbjct: 1479 KWDDTSFNLPSNPAQAWLCNDKENLSSS--EHTQFNSRSENKTSSWTPESKTSRKSL 1533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,010,698
Number of Sequences: 539616
Number of extensions: 5146763
Number of successful extensions: 9181
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9155
Number of HSP's gapped (non-prelim): 21
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)