Query psy286
Match_columns 284
No_of_seqs 120 out of 474
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 18:42:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1op4_A Neural-cadherin; beta s 8.7 1.1E+02 0.0039 25.8 1.2 21 110-130 50-70 (159)
2 1f8v_D Mature capsid protein g 6.5 1.6E+02 0.0054 20.3 0.8 23 145-167 7-29 (40)
3 1ik9_C DNA ligase IV; DNA END 6.5 1.1E+02 0.0039 20.0 0.1 14 181-194 10-23 (37)
4 16pk_A PGK, 3-phosphoglycerate 6.3 2.9E+02 0.0098 26.9 2.8 62 72-142 46-138 (415)
5 2isb_A Fumarase, FUM-1; NP_069 5.4 1.4E+02 0.0047 26.3 0.0 21 171-191 171-191 (192)
6 1ut9_A Cellulose 1,4-beta-cell 5.3 1.3E+02 0.0044 29.7 -0.3 28 42-70 510-537 (609)
7 4f6o_A Metacaspase-1; rossmann 5.2 1.1E+02 0.0036 28.7 -0.9 35 100-136 170-206 (350)
8 4g0i_A Protein YQJG; glutathio 5.1 97 0.0033 28.4 -1.2 24 3-26 51-74 (328)
9 1i17_A Mouse doppel, prion-lik 4.7 53 0.0018 26.6 -2.8 17 177-193 16-32 (107)
10 2lnh_A N-WAsp, neural wiskott- 4.7 1.9E+02 0.0065 21.1 0.4 16 214-229 19-34 (65)
No 1
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=8.73 E-value=1.1e+02 Score=25.79 Aligned_cols=21 Identities=14% Similarity=0.378 Sum_probs=17.9
Q ss_pred ccccccCCcccccCCCccCee
Q psy286 110 EKGQRVGKPQVKDCPNSEDIL 130 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~ 130 (284)
+.||.+++-.+.||..+.+++
T Consensus 50 ~~g~~lgkV~F~dC~g~~~~~ 70 (159)
T 1op4_A 50 HEGQPLLNVKFSNCNRKRKVQ 70 (159)
T ss_dssp CSSCCEEECCCBCCSSCCCEE
T ss_pred cCCceeceeecccCCCCCcee
Confidence 679999988899999888773
No 2
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=6.53 E-value=1.6e+02 Score=20.32 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=8.9
Q ss_pred hhhhhhhccCCCCCCCCccceee
Q psy286 145 KKDICKSSKRGAPKSAGPVAVCH 167 (284)
Q Consensus 145 ~k~i~~~~~r~~~~~aGp~~~~~ 167 (284)
-|.|+++.--.++..+||++.+-
T Consensus 7 Vk~ilks~l~~aS~iPGPVG~~a 29 (40)
T 1f8v_D 7 VLRVLNQISGTLSVIPGPVGTIS 29 (40)
T ss_dssp HHHHHHHTCCC------------
T ss_pred HHHHHHHHHHHHhcCCCchhHHH
Confidence 36788888899999999998763
No 3
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=6.51 E-value=1.1e+02 Score=19.97 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=11.4
Q ss_pred eccCCCCeeeEcCC
Q psy286 181 LSSSSGNKYYENPR 194 (284)
Q Consensus 181 GeDefGNKYYE~p~ 194 (284)
-+|+||.-|.++-.
T Consensus 10 n~D~yGDSY~rd~t 23 (37)
T 1ik9_C 10 EYDCYGDSYFIDTD 23 (37)
T ss_dssp SBCTTSCBSSSCCC
T ss_pred hcccccccccCcCC
Confidence 47999999998753
No 4
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=6.26 E-value=2.9e+02 Score=26.87 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=37.0
Q ss_pred eecccceEEEeccceehhhhhhhhhhcccccc------------ccccccc---------cccccCCcccccCC------
Q psy286 72 TMDHGAYTMLWSHRTVTAKVLSRKRREKDDRI------------GDFFSRE---------KGQRVGKPQVKDCP------ 124 (284)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~---------~~~~~~~~~~~~~~------ 124 (284)
-+|+||=.+|-||- .|-.-+.++.| -++||-+ -|+.|. -+.||-
T Consensus 46 ll~~Gakvil~SHl-------GRPkg~~~~~~~~~~~~~~~~~~~~~~SL~pva~~Ls~lLg~~V~--f~~d~~G~~~~v 116 (415)
T 16pk_A 46 VLTEGGSCVLMSHL-------GRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVT--FAPDCLNAADVV 116 (415)
T ss_dssp HHHTTCEEEEECCC-------SCCCCBCGGGHHHHHHTTCCTTCCGGGCSHHHHHHHHHHHTSCCE--EESCTTSCHHHH
T ss_pred HHHCCCEEEEEecC-------CCCCCcccccccccccccccccCCcccCHHHHHHHHHHHhCCCCe--eCCccCChHHHh
Confidence 35789999999994 33332222333 3555533 355444 477884
Q ss_pred ---CccCeeeE-eeeccchhHH
Q psy286 125 ---NSEDILHL-RYRWCSLEEE 142 (284)
Q Consensus 125 ---~~~~~~~~-~~~~~~~~~~ 142 (284)
..++||-| |+|+..-|+.
T Consensus 117 ~~l~~G~VlLLEN~RF~~~E~~ 138 (415)
T 16pk_A 117 SKMSPGDVVLLENVRFYKEEGS 138 (415)
T ss_dssp HTCCTTCEEEECCGGGBGGGGC
T ss_pred hcCCCCcEEEeccccCCccccc
Confidence 34666666 8999876653
No 5
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=5.37 E-value=1.4e+02 Score=26.34 Aligned_cols=21 Identities=24% Similarity=0.117 Sum_probs=15.8
Q ss_pred eeecCCCcceeccCCCCeeeE
Q psy286 171 WVIRPCSLPQLSSSSGNKYYE 191 (284)
Q Consensus 171 ~~~R~g~l~VGeDefGNKYYE 191 (284)
.+..+|-++|..|..||.+|+
T Consensus 171 eVedfGP~iV~iD~~Gn~ly~ 191 (192)
T 2isb_A 171 EVERFGPCIVAIDAHGNSLYR 191 (192)
T ss_dssp EEEEEEEEEEEECTTSCBTTC
T ss_pred EEEeeeeEEEEEeCCCccccc
Confidence 334454557999999999996
No 6
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=5.27 E-value=1.3e+02 Score=29.69 Aligned_cols=28 Identities=18% Similarity=0.547 Sum_probs=21.8
Q ss_pred CcccceeeeeeeeeEeeecccccccceee
Q psy286 42 SQPVRERTLKVGVGVISARPVHHRYWSTE 70 (284)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (284)
..|. .+..-||+|--+.+-+|||.|+..
T Consensus 510 ~NP~-~~SyVvG~G~~~p~~pHHR~~s~~ 537 (609)
T 1ut9_A 510 RNAM-DQSYVTGYGERPLQNPHDRFWTPQ 537 (609)
T ss_dssp CSTT-CCBCBBTCSSSCBCCCBCSSSCTT
T ss_pred CCCC-CceEEEecCCCCCCCCcccccccc
Confidence 3454 467889999999888899998753
No 7
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=5.20 E-value=1.1e+02 Score=28.74 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=26.4
Q ss_pred cccccccccc--ccccccCCcccccCCCccCeeeEeeec
Q psy286 100 DDRIGDFFSR--EKGQRVGKPQVKDCPNSEDILHLRYRW 136 (284)
Q Consensus 100 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (284)
||-|.+.+.+ .+|-+|. +|-||-.|+-++.|.|.+
T Consensus 170 ddeL~~~L~~~l~~g~~vt--~IlD~ChSGt~ldlp~~~ 206 (350)
T 4f6o_A 170 DDEMHDIMVKPLQQGVRLT--ALFDSCHSGTVLDLPYTY 206 (350)
T ss_dssp HHHHHHHHTTTCCTTCEEE--EEECSSSCTTTTCCSEEE
T ss_pred HHHHHHHHHhhcCCCCeEE--EEEccCCCCccccccccc
Confidence 4555555443 4688888 899999999999998854
No 8
>4g0i_A Protein YQJG; glutathionyl-hydroquinone reductase, oxidoreductase; HET: MES; 2.05A {Escherichia coli} PDB: 3r3e_A* 4g0k_A* 4g0l_A*
Probab=5.05 E-value=97 Score=28.44 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=19.9
Q ss_pred CCCccccccCCCCcCccceeehhh
Q psy286 3 GKNRYWSTVPRSLPWSHRTVTAKV 26 (284)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (284)
.++||---|-+.-||.||+.-+--
T Consensus 51 e~gry~Ly~s~~CPwAhR~~I~~~ 74 (328)
T 4g0i_A 51 EKDRYHLYVSLACPWAHRTLIMRK 74 (328)
T ss_dssp CTTSEEEEECSSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCcHHHHHHHHHH
Confidence 467999889999999999976643
No 9
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=4.73 E-value=53 Score=26.59 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=11.0
Q ss_pred CcceeccCCCCeeeEcC
Q psy286 177 SLPQLSSSSGNKYYENP 193 (284)
Q Consensus 177 ~l~VGeDefGNKYYE~p 193 (284)
+|-|-.-.-||+|||..
T Consensus 16 KLdIdfGaegNrYYean 32 (107)
T 1i17_A 16 KLDIDFGAEGNRYYAAN 32 (107)
T ss_dssp CCCCCCCHHHHHHHHHH
T ss_pred eeeeecccccchhhhhc
Confidence 34344445699999954
No 10
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=4.72 E-value=1.9e+02 Score=21.07 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=12.0
Q ss_pred CCCCCCchhhhhhccc
Q psy286 214 DGSMVPAEWYGWLHYK 229 (284)
Q Consensus 214 DaSqIPPEWH~WLHht 229 (284)
+..-|||||..-|...
T Consensus 19 ~~~glp~eW~~ll~~s 34 (65)
T 2lnh_A 19 DLNNLDPELKNLFDMC 34 (65)
T ss_dssp CGGGCCTTHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHc
Confidence 4457999999987543
Done!